A Novel Spider Monkey Optimization for Reliable Data Dissemination in VANETs Based on Machine Learning

The growth in linked and autonomous vehicles has led to the emergence of vehicular ad hoc networks (VANETs) as a means to enhance road safety, traffic efficiency, and passenger comfort. However, VANETs face challenges in facilitating trustworthiness and high-quality services due to communication delays caused by traffic, dynamic topology changes, variable speeds, and other influencing factors. Hence, there is a need for a reliable data dissemination scheme capable of reducing communication delays among hops by identifying effective forwarder nodes. In this paper, we propose a novel, weighted, estimated, spider monkey-based, nature-inspired optimization (w-SMNO) method to generate a set of efficient relays. Additionally, we introduce a dynamic weight assignment and configuration model to enhance system accuracy using a neural network based on backpropagation with gradient descent optimization techniques to minimize errors in the machine learning model. The w-SMNO also incorporates a distinct algorithm for effective relay selection among multiple monkey spider groups. The simulation results demonstrate substantial improvements in w-SMNO, with a 35.7% increase in coverage, a 41.2% reduction in the end-to-end delay, a 36.4% improvement in the message delivery rate, and a 38.4% decrease in the collision rate compared to the state-of-the-art approaches.

First whole-genome sequence and assembly of the Ecuadorian brown-headed spider monkey (Ateles fusciceps fusciceps), a critically endangered species, using Oxford Nanopore Technologies

The Ecuadorian brown-headed spider monkey (Ateles fusciceps fusciceps) is currently considered one of the most endangered primates in the world and is classified as critically endangered [International union for conservation of nature (IUCN)]. It faces multiple threats, the most significant one being habitat loss due to deforestation in western Ecuador. Genomic tools are keys for the management of endangered species, but this requires a reference genome, which until now was unavailable for A. f. fusciceps. The present study reports the first whole-genome sequence and assembly of A. f. fusciceps generated using Oxford Nanopore long reads. DNA was extracted from a subadult male, and libraries were prepared for sequencing following the Ligation Sequencing Kit SQK-LSK112 workflow. Sequencing was performed using a MinION Mk1C sequencer. The sequencing reads were processed to generate a genome assembly. Two different assemblers were used to obtain draft genomes using raw reads, of which the Flye assembly was found to be superior. The final assembly has a total length of 2.63 Gb and contains 3,861 contigs, with an N50 of 7,560,531 bp. The assembly was analyzed for annotation completeness based on primate ortholog prediction using a high-resolution database, and was found to be 84.3% complete, with a low number of duplicated genes indicating a precise assembly. The annotation of the assembly predicted 31,417 protein-coding genes, comparable with other mammal assemblies. A reference genome for this critically endangered species will allow researchers to gain insight into the genetics of its populations and thus aid conservation and management efforts of this vulnerable species.

New bands in the sleep stages of spider monkeys (Ateles geoffroyi): Electroencephalographic correlations and spatial distribution

The study of electroencephalographic (EEG) signals in nonhuman primates has led to important discoveries in neurophysiology and sleep behavior. Several studies have analyzed digital EEG data from primate species with prehensile tails, like the spider monkey, and principal component analysis has led to the identification of new EEG bands and their spatial distribution during sleep and wakefulness in these monkeys. However, the spatial location of the EEG correlations of these new bands during the sleep-wake cycle in the spider monkey has not yet been explored. Thus, the objective of this study was to determine the spatial distribution of EEG correlations in the new bands during wakefulness, rapid eye movement (REM) sleep, and non-REM sleep in this species. EEG signals were obtained from the scalp of six monkeys housed in experimental conditions in a laboratory setting. Regarding the 1-21 Hz band, a significant correlation between left frontal and central regions was recorded during non-REM 2 sleep. In the REM sleep, a significant correlation between these cortical areas was seen in two bands: 1-3 and 3-13 Hz. This reflects a modification of the degree of coupling between the cortical areas studied, associated with the distinct stages of sleep. The intrahemispheric EEG correlation found between left perceptual and motor regions during sleep in the spider monkey could indicate activation of a neural circuit for the processing of environmental information that plays a critical role in monitoring the danger of nocturnal predation.

The acoustic structure of spider monkey (Ateles geoffroyi) calls is related both to caller goal and arousal

Analyzing the factors related to the acoustic structure of primate calls is fundamental to identifying the potential information these signals convey, and therefore, their potential function. It is well-accepted that caller arousal is an important driver of acoustic variation in call structure. However, evidence suggests that arousal alone cannot explain the production of calls with different acoustic structures. The "caller goal" framework posits that a call type (e.g., bark and chitter) is a signal which evolved to elicit specific changes on receiver behavior, and a caller's goal, not its arousal state, determines the basic acoustic structure of animal calls. To get a better insight into the effects of caller goal and arousal on the acoustic structure of primate calls, we analyzed the acoustic variation of 382 calls produced by 27 free-ranging spider monkeys (Ateles geoffroyi) in six call contexts representing three caller goals (establishing contact, engage in aggression, and predator presence) across two arousal states (high and low). Discriminant function analyses and linear mixed models showed a strong effect of caller goal on calls' acoustic structure and supported the effect of arousal state on acoustic variation; misclassified calls mainly occurred between the same caller goal categories (e.g., alarm low arousal and alarm high arousal), and acoustic differences between arousal contexts showed the same pattern across the three caller goals (e.g., low center frequency [kHz] values in high arousal contexts). Our results supported the view that caller goal is the primary driver of acoustic difference and showed the effects of caller arousal on other structural differences.

Dietary ethanol ingestion by free-ranging spider monkeys (Ateles geoffroyi)

Ethanol within ripe and over-ripe fruit is produced naturally through the metabolic activity of fermentative yeasts. As a consequence, frugivorous animals may chronically consume ethanol as part of their routine diet, although direct measurements of such exposure are lacking. Here, we present data on ethanol concentrations within fruits of Spondias mombin (Anacardiaceae) that are eaten by black-handed spider monkeys (Ateles geoffroyi) on Barro Colorado Island, Panama. Of collected fruits that were partially consumed and then dropped by foraging monkeys, pulp-ethanol content was typically in the range of 1-2%; the percentage of pulp for consumed fruits was not significantly correlated with the ethanol concentration of the pulp remaining within each fruit. Urine samples from foraging spider monkeys were also evaluated for the ethanol metabolites ethyl glucuronide and ethyl sulfate; five of six samples tested positive for both compounds. In aggregate, these data indicate natural exposure to fruit-associated ethanol in a wild primate species.

Network analysis as a tool to understand social development in spider monkeys

The emerging field of network science has demonstrated that an individual's connectedness within their social network has cascading effects to other dimensions of life. Like humans, spider monkeys live in societies with high fission-fusion dynamics, and are remarkably social. Social network analysis (SNA) is a powerful tool for quantifying connections that may vary as a function of initiating or receiving social behaviors, which has been described as shifting social roles. In primatology, the SNA literature is dominated by work in catarrhines, and has yet to be applied to the study of development in a platyrrhine model. Here, SNA was utilized in combination with R-Index social role calculation to characterize social interaction patterns in juvenile and adult Colombian spider monkeys (Ateles fusciceps rufiventris). Connections were examined across five behaviors: embrace, face-embrace, grooming, agonism, and tail-wrapping from 186 hr of observation and four network metrics. Mann-Whitney U tests were utilized to determine differences between adult and juvenile social network patterns for each behavior. Face-embrace emerged as the behavior with different network patterns for adults and juveniles for every network metric. With regard to social role, juveniles were receivers, not initiators, for embrace, face-embrace, and grooming (ps < .05). Network and social role differences are discussed in light of social development and aspects of the different behaviors.

Principal component analysis of electroencephalographic activity during sleep and wakefulness in the spider monkey (Ateles geoffroyi)

The study of electroencephalographic (EEG) activity during sleep in the spider monkey has provided new insights into primitive arboreal sleep physiology and behavior in anthropoids. Nevertheless, studies conducted to date have maintained the frequency ranges of the EEG bands commonly used with humans. The aim of the present work was to determine the EEG broad bands that characterize sleep and wakefulness in the spider monkey using principal component analysis (PCA). The EEG activity was recorded from the occipital, central, and frontal EEG derivations of six young-adult male spider monkeys housed in a laboratory setting. To determine which frequencies covaried and which were orthogonally independent during sleep and wakefulness, the power EEG spectra and interhemispheric and intrahemispheric EEG correlations from 1 to 30 Hz were subjected to PCA. Findings show that the EEG bands detection differed from those reported previously in both spider monkeys and humans, and that the 1-3 and 2-13 Hz frequency ranges concur with the oscillatory activity elucidated by cellular recordings of subcortical regions. Results show that applying PCA to the EEG spectrum during sleep and wakefulness in the spider monkey led to the identification of frequencies that covaried with, and were orthogonally independent of, other frequencies in each behavioral vigilance state. The new EEG bands differ from those used previously with both spider monkeys and humans. The 1-3 and 2-13 Hz frequency ranges are in accordance with the oscillatory activity elucidated by cellular recordings of subcortical regions in other mammals.

Precise digit use increases the expression of handedness in Colombian spider monkeys (Ateles fusciceps rufiventris)

Decades of research on the hand use patterns of nonhuman primates can be aptly summarized by the following phrase: measurement matters. There is a general consensus that simple reaching is a poor indicator of handedness in most species, while tasks that constrain how the hands are used elicit individual, and in some cases, population-level biases. The TUBE task has become a popular measure of handedness, although there is variability in its administration across studies. The goal of this study was to investigate whether TUBE performance is affected by tube diameter, with the hypothesis that decreasing tube diameter would increase task complexity, and therefore the expression of handedness. We predicted that hand preference strength, but not direction, would be affected by tube diameter. We administered the TUBE task using a 1.3 cm tube to Colombian spider monkeys, and compared their performance to a previous study using a larger 2.5 cm diameter tube. Hand preference strength increased significantly on the smaller diameter tube. Hand preference direction was not affected. Notably, spider monkeys performed the TUBE task using a single digit, despite the longstanding view that this species has poor dexterity. We encourage investigators who use the TUBE task to carefully consider the diameter of the tube used in testing, and to report digit use consistently across studies. In addition, we recommend that researchers who cannot use the TUBE task try to incorporate the key features from this task into their own species appropriate measures: bimanual coordination and precise digit use.

Identification of MHC I class genes in two Platyrrhini species

The major histocompatibility complex is a diverse gene family that plays a crucial role in the adaptive immune system. In humans, the MHC class I genes consist of the classical loci of HLA-A, -B, and -C, and the nonclassical loci HLA-E, -F, and -G. In Platyrrhini species, few MHC class I genes have been described so far and were classified as MHC-E, MHC-F, and MHC-G, with MHC-G possibly representing a classical MHC class I locus while there were arguments about the existence of the MHC-B locus in Platyrrhini. In this study, MHC class I genes were identified in eight common marmosets (Callithrix jacchus) and two brown-headed spider monkeys (Ateles fusciceps). For common marmosets, 401 cDNA sequences were sequenced and 18 alleles were detected, including 14 Caja-G alleles and 4 Caja-B alleles. Five to eleven Caja-G alleles and one to three Caja-B alleles were detected in each animal. For brown-headed spider monkeys, 102 cDNA sequences were analyzed, and 9 new alleles were identified, including 5 Atfu-G and 4 Atfu-B alleles. Two or three Atfu-G and two Atfu-B alleles were obtained for each of animal. In phylogenetic analyses, the MHC-G and -B alleles from the two species and other Platyrrhini species show locus-specific clusters with bootstrap values of 86% and 50%. The results of pairwise sequence comparisons and an excess of non-synonymous nucleotide substitutions in the PBR region are consistent with the suggestion that Caja-G and Atfu-G may be classical MHC class I loci in the Platyrrhini species… But it appears that MHC-B locus of the two Platyrrhini species shares features with both classical and nonclasical MHC class I loci. Our results are an important addition to the limited MHC immunogenetic information available for the Platyrrhini species.