1
|
Várnai T, Marshak A, Eck TF. Observation-based study on aerosol optical depth and particle size in partly cloudy regions. J Geophys Res Atmos 2017; 122:10013-10024. [PMID: 32724904 PMCID: PMC7380075 DOI: 10.1002/2017jd027028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
This study seeks to help better understand aerosol-cloud interactions by examining statistical relationships between aerosol properties and nearby low-altitude cloudiness using satellite data. The analysis of a global dataset of MODIS (Moderate Resolution Imaging Spectroradiometer) observations reveals that the positive correlation between cloudiness and aerosol optical depth (AOD) reported in earlier studies is strong throughout the globe and during both winter and summer. Typically, AOD is 30-50% higher on cloudier-than-average days than on less cloudy days. A combination of satellite observations and MERRA-2 global reanalysis data reveals that the correlation between cloud cover and AOD is strong for all aerosol types considered: sulfate, dust, carbon, and sea salt. The observations also indicate that in the presence of nearby clouds, aerosol size distributions tend to shift toward smaller particles over large regions of the Earth. This is consistent with a greater cloud-related increase in the AOD of fine mode than of coarse mode particles. The greater increase in fine mode AOD implies that the cloudiness-AOD correlation does not come predominantly from cloud detection uncertainties. Additionally, the results show that aerosol particle size increases near clouds even in regions where it decreases with increasing cloudiness. This suggests that the decrease with cloudiness comes mainly from changes in large-scale environment, rather than from clouds increasing the number or the size of fine mode aerosols. Finally, combining different aerosol retrieval algorithms demonstrated that quality assessment flags based on local variability can help identifying when the observed aerosol populations are affected by surrounding clouds.
Collapse
Affiliation(s)
- T Várnai
- Joint Center for Earth System Technology, University of Maryland Baltimore County
- Climate and Radiation Laboratory, NASA Goddard Space Flight Center
| | - A Marshak
- Climate and Radiation Laboratory, NASA Goddard Space Flight Center
| | - T F Eck
- Universities Space Research Association
- Biospheric Sciences Laboratory, NASA Goddard Space Flight Center
| |
Collapse
|
2
|
Zhang Z, Werner F, Cho HM, Wind G, Platnick S, Ackerman AS, Di Girolamo L, Marshak A, Meyer K. A framework based on 2-D Taylor expansion for quantifying the impacts of sub-pixel reflectance variance and covariance on cloud optical thickness and effective radius retrievals based on the bi-spectral method. J Geophys Res Atmos 2016; 121:7007-7025. [PMID: 32908807 PMCID: PMC7477826 DOI: 10.1002/2016jd024837] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The bi-spectral method retrieves cloud optical thickness (τ) and cloud droplet effective radius (r e ) simultaneously from a pair of cloud reflectance observations, one in a visible or near infrared (VIS/NIR) band and the other in a shortwave-infrared (SWIR) band. A cloudy pixel is usually assumed to be horizontally homogeneous in the retrieval. Ignoring sub-pixel variations of cloud reflectances can lead to a significant bias in the retrieved τ and r e . In the literature, the retrievals of τ and r e are often assumed to be independent and considered separately when investigating the impact of sub-pixel cloud reflectance variations on the bi-spectral method. As a result, the impact on τ is contributed only by the sub-pixel variation of VIS/NIR band reflectance and the impact on r e only by the sub-pixel variation of SWIR band reflectance. In our new framework, we use the Taylor expansion of a two-variable function to understand and quantify the impacts of sub-pixel variances of VIS/NIR and SWIR cloud reflectances and their covariance on the τ and r e retrievals. This framework takes into account the fact that the retrievals are determined by both VIS/NIR and SWIR band observations in a mutually dependent way. In comparison with previous studies, it provides a more comprehensive understanding of how sub-pixel cloud reflectance variations impact the τ and r e retrievals based on the bi-spectral method. In particular, our framework provides a mathematical explanation of how the sub-pixel variation in VIS/NIR band influences the r e retrieval and why it can sometimes outweigh the influence of variations in the SWIR band and dominate the error in r e retrievals, leading to a potential contribution of positive bias to the r e retrieval. We test our framework using synthetic cloud fields from a large-eddy simulation and real observations from MODIS. The predicted results based on our framework agree very well with the numerical simulations. Our framework can be used to estimate the retrieval uncertainty from sub-pixel reflectance variations in operational satellite cloud products and to help understand the differences in τ and r e retrievals between two instruments.
Collapse
Affiliation(s)
- Z. Zhang
- Physics Department, UMBC, Baltimore, MD, USA
- Joint Center for Earth Systems Technology, UMBC, Baltimore, MD, USA
| | - F. Werner
- Joint Center for Earth Systems Technology, UMBC, Baltimore, MD, USA
| | - H.-M. Cho
- Joint Center for Earth Systems Technology, UMBC, Baltimore, MD, USA
- Electronics and Telecommunications Research Institute, Korea
| | - G. Wind
- NASA Goddard Space Flight Center, Greenbelt, MD, USA
- Science Systems and Applications, Inc., Maryland 20706, USA
| | - S. Platnick
- NASA Goddard Space Flight Center, Greenbelt, MD, USA
| | - A. S. Ackerman
- NASA Goddard Institute for Space Studies, New York City, NY, USA
| | - L. Di Girolamo
- Department of Atmospheric Sciences, University of Illinois, Urbana-Champaign, IL, USA
| | - A. Marshak
- NASA Goddard Space Flight Center, Greenbelt, MD, USA
| | - Kerry Meyer
- NASA Goddard Space Flight Center, Greenbelt, MD, USA
- Universities Space Research Association (USRA), Columbia, MD, USA
| |
Collapse
|
3
|
|
4
|
Abstract
1. Pollen mother cells exposed to low dosages of x-rays at various stages show different frequencies of chromosome abnormalities in the first meiotic anaphase. 2. Maximum frequencies of abnormalities were obtained in buds irradiated in the pachytene stage of the meiotic prophase and in the preceding mitosis. 3. These results are taken to indicate that the x-ray-sensitive portions of the chromonemata are closely approximated in pairs in pachytene and in the early mitotic prophase. The significance of this in relation to non-homologous pairing is indicated. 4. From the nature of the chromosome configurations observed it is concluded that chromonemata are two-parted when they synapse and that a chromonematic division occurs between pachytene and anaphase and during the mitotic prophase. 5. The frequencies of abnormalities show a linear relationship to dosage. 6. The diameter of the sensitive volume of the chromonema is calculated and found to approximate the diameter of some known protein molecules. 7. The linkage mechanism is found to make up about 90 per cent of the total sensitive volume which corresponds with the approximate reduction in length of the chromonema from pachytene to anaphase. 8. The relation of these sensitive volumes to the gene is discussed.
Collapse
Affiliation(s)
- A Marshak
- Biological Laboratories, Harvard University, Cambridge
| |
Collapse
|
5
|
Abstract
1. A method for isolating nuclei in quantity from mammalian tissues is described. 2. The rate of uptake of radioactive phosphorus by nuclei is found to be quite rapid. The phosphorus was shown not to be taken up by exchange. 3. Nuclei of tumors accumulate more radioactive phosphorus than normal liver nuclei. This was shown to be due to mitotic activity and not a form of metabolism peculiar to tumor cells. 4. The specific activities of nuclei and cytoplasm are compared. 5. 60 to 70 per cent of the nuclear radioactive phosphorus is present as nucleoprotein from 1 hour to 5 days after it is administered. In the lymphoma nuclei 90-95 per cent of the phosphorus is in the nucleoprotein fraction from 1-5 days after it is administered. 6. The specific activities of the nucleoprotein, lipid, and acid-soluble fractions of liver and tumor nuclei are compared. 7. From the rate of P(32) uptake by nuclei it is calculated that a new lymphoma nucleus is synthesized on the average once every 27 hours. This is in agreement with the observed rate of growth of the tumor. 8. In the lymphoma nucleus it is calculated that 7 x 10(4) molecules of tetranucleotide are synthesized per second. 9. Irradiation with 200 r. x-rays alters the distribution of P(32) in the lymphoma cell, markedly increasing the concentration in the nucleus shortly after irradiation. The P(32) concentration in the cytoplasm decreases with time after irradiation. It is suggested that the altered distribution is correlated with the inhibition of mitosis produced by the x-rays. 10. Continual synthesis of nucleoprotein takes place even in nuclei of cells which do not undergo mitosis.
Collapse
Affiliation(s)
- A Marshak
- Radiation Laboratory, University of California, Berkeley
| |
Collapse
|
6
|
Abstract
1. Egg albumin when injected into an ameba or discharged into the solution about it raises the apparent pH of the cytoplasm of the ameba. 2. With time the cytoplasm returns to the original pH 6.9 if the nucleus is present. Amebae that have received repeated injections of albumin in some cases extrude their nuclei. In these cells the cytoplasm remains at the more alkaline pH induced by the albumin for at least 12 hours. 3. When a 2 per cent solution of albumin is introduced into a suspension of amebae there is a temporary marked rise in the rate at which CO2 is given off with no corresponding rise in O2 uptake. 4. The results observed can be explained if the albumin discharged onto the surface of the ameba rapidly enters the cell and there becomes distributed in a phase of the cytoplasm other than the one which contains the phenol red.
Collapse
Affiliation(s)
- A Marshak
- Laboratory of General Physiology, Harvard University, Cambridge, and the Marine Biological Laboratory, Woods Hole
| |
Collapse
|
7
|
Affiliation(s)
- A Marshak
- Radiation Laboratory and Department of Botany, University of California
| | | |
Collapse
|
8
|
Affiliation(s)
- A Marshak
- Radiation Laboratory, University of California
| |
Collapse
|
9
|
Affiliation(s)
- A Marshak
- Radiation Laboratory and the Division of Plant Pathology, University of California
| | | |
Collapse
|
10
|
Marshak A, Bradley M. Relative Sensitivity of Chromosomes to Neutrons and X-Rays: III. Comparison of Carcinoma and Lymphosarcoma in the Rat. Proc Natl Acad Sci U S A 2006; 31:84-90. [PMID: 16588690 PMCID: PMC1078758 DOI: 10.1073/pnas.31.2.84] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- A Marshak
- Radiation Laboratory, University of California
| | | |
Collapse
|
11
|
Marshak A. A Comparison of the Sensitivity of Mitotic and Meiotic Chromosomes of Vicia Faba and Its Bearing on Theories of Crossing-Over. Proc Natl Acad Sci U S A 2006; 25:510-6. [PMID: 16588296 PMCID: PMC1077958 DOI: 10.1073/pnas.25.10.510] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- A Marshak
- Radiation Laboratory, University of California
| |
Collapse
|
12
|
Affiliation(s)
- A Marshak
- The Laboratory of Pathology, New England Deaconess Hospital
| |
Collapse
|
13
|
Affiliation(s)
- A Marshak
- Radiation Laboratory, University of California
| |
Collapse
|
14
|
|
15
|
Mildvan D, Bassiakos Y, Zucker ML, Hyslop N, Krown SE, Sacks HS, Zachary J, Paredes J, Fessel WJ, Rhame F, Kramer F, Fischl MA, Poiesz B, Wood K, Ruprecht RM, Kim J, Grossberg SE, Kasdan P, Bergé P, Marshak A, Pettinelli C. Synergy, activity and tolerability of zidovudine and interferon-alpha in patients with symptomatic HIV-1 infection: AIDS Clincal Trial Group 068. Antivir Ther 1996; 1:77-88. [PMID: 11321183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Abstract
Thirty-four subjects with symptomatic HIV-1 infection, p24 antigenaemia, and CD4 cell counts > 200/mm3 were randomly assigned to receive treatment with either zidovudine (ZDV) orally, interferon-alpha (IFN-alpha) subcutaneously, or both at respective low (200 mg ZDV/ 2 million international units IFN-alpha (MIU)), middle (400 mg/4 MIU) or high (600 mg/6 MIU) daily dose levels for 12 weeks. Thereafter, all patients received combination therapy at the initially assigned dose level to a total of 96 weeks. This design permitted analysis by the combination index (CI) method, which demonstrated antiretroviral synergy between ZDV and IFN-alpha with respect to p24 antigen suppression. Over the first 12 weeks, combination therapy was acceptably tolerated, more so than IFN-alpha monotherapy, and it was significantly more active in suppressing antigenaemia than either of the monotherapies. Similarly, the high-dose combination was the most active dose level over weeks 12 to 96. Combination ZDV/IFN-alpha at the optimal dose level defined by this trial merits further study. In addition, the CI design strategy employed here may be useful for the investigation of new antiretroviral combinations.
Collapse
Affiliation(s)
- D Mildvan
- Division of Infectious Diseases, Beth Israel Medical Center, New York, NY 10003, USA
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
16
|
Marshak A, Davis A, Cahalan R, Wiscombe W. Bounded cascade models as nonstationary multifractals. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics 1994; 49:55-69. [PMID: 9961191 DOI: 10.1103/physreve.49.55] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
|
17
|
Foster C, Van Fleet M, Marshak A. Tryptic digestion of myosin light chain kinase produces an inactive fragment that is activated on continued digestion. Arch Biochem Biophys 1986; 251:616-23. [PMID: 3800388 DOI: 10.1016/0003-9861(86)90371-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Trypsin digestion of chicken gizzard myosin light chain kinase at limiting trypsin concentrations proceeds in stages. In the first stage, catalytic activity in the presence or absence of calcium and calmodulin decreases. In the second stage, activity in the absence of calcium increases, and the calcium-calmodulin complex no longer stimulates activity. The initial loss of activity is associated with the appearance of a 59,000-Da peptide that has been isolated and shown to have low catalytic activity. This peptide was further digested to a 55,000-Da peptide that has calcium-independent catalytic activity. This peptide has been isolated, and its affinities for the peptide substrate Kemptamide (Lys-Lys-Arg-Pro-Gln-Arg-Ala-Thr-Ser-Asn-Val-Phe-Ser-NH2) and ATP have been shown to be the same as those of the intact enzyme. Neither the 59,000-Da nor the 55,000-Da fragment binds calmodulin.
Collapse
|
18
|
Marshak A, Doherty PC, Wilson DB. The control of specificity of cytotoxic T lymphocytes by the major histocompatibility complex (AG-B) in rats and identification of a new alloantigen system showing no AG-B restriction. J Exp Med 1977; 146:1773-90. [PMID: 72782 PMCID: PMC2181896 DOI: 10.1084/jem.146.6.1773] [Citation(s) in RCA: 54] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
The regulatory influence of the rat major histocompatibility complex (MHC) (Ag-B complex) on the specificity of cytotoxic T lymphocytes was investigated. It was shown that the effector cells were specific for the original Ag-B phenotype in rat systems in which the responder and stimulator cell populations were unquestionably MHC identical but expressed different minor alloantigens of viral antigens. However, combined in vivo immunization and restimulation in culture of lymphocytes from rat strains previously thought to be MHC compatible resulted in the generation of cytotoxic T lymphocytes which effectively lyse not only target cells from the specific stimulating strains but also, to varying degrees, target cells from third party strains regardless of their Ag-B haplotypes. Genetic analysis indicates that expression of these cytotoxic T-cell-defined ("CT") antigens, found on both T and B lymphocytes, detectable thus far only with cytotoxic lymphocytes, is controlled by a single locus which segregates in backcross populations with the rat MHC. Discrepancies between the nature of CT antigens of the rat Ag-B and I-region specificities of the mouse H-2 are discussed.
Collapse
|
19
|
Wilson DB, Marshak A, Razzino-Pierson G, Howard JC. Specific selection of cytotoxic effector cells: the generation of cytotoxic T cells in rat thoracic duct lymphocyte populations positively or negatively selected for reactivity to specific strong histocompatibility alloantigens. J Immunol 1976; 116:1624-8. [PMID: 58040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
These studies consider the generation of cytotoxic T lymphocytes (CTL) from precursors (CTLP) present in rat thoracic duct lymphocytes after stimulation with strong alloantigens. Also, they explore the relationship between CTLP and "initiator" (I) lymphocytes responsible for specific GVH and MLI reactions. Positively selected TDL populations prepared in bulk MLI cultures show enriched GVH and MLI reactivity for the selecting major histocompatibility complex (MHC) haplotype, but no cytotoxic activity, raising the possibility that I and CTLP may belong to different subpopulations, and the latter failed to differentiate or to survive under these culture conditions. Restimulation of these cells in Marbrook culture vessels with the original priming haplotype under conditions suitable for generating killer cells in vitro resulted in greatly increased specific CTL activity with accelerated kinetics soon after priming and normal kinetics later. These findings indicate that "memory" killer cells can be generated in a previously stimulated lymphocyte population that had no overt cytotoxic activity. Restimulation with third party haplotypes failed to give CTL activity either to specific or to third party targets. Negatively selected TDL populations prepared by "filtration" through x-irradiated F1 rats, depleted of specific GVH and MLI responses, were also depleted of the ability to generate CTL in Marbrook cultures stimulated with the selecting haplotype. Stimulation with third party haplotypes, or with both third party and specific haplotypes together, gave CTL effective only against the third party target.
Collapse
|
20
|
Wilson DB, Marshak A, Howard JC. SPECIFIC positive and negative selection of rat lymphocytes reactive to strong histocompatibility antigens: activation with alloantigens in vitro and in vivo. J Immunol 1976; 116:1030-40. [PMID: 56402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
This study compares the functional properties of rat thoracic duct lymphocytes (TDL) after stimulation with strong alloantigens of the major histocompatibility complex (MHC) either in vitro in preparative mixed lymphocyte interactions (MLI) or in vivo in systemic graft-vs-host (GVH) reactions. Comparisons were made of PHA responses and reactivity to the specific priming haplotypes or to third party haplotypes in analytical MLI and in GVH reactions either before or after the activated populations were "parked" in syngenetic T cell-deprived (B) rats. These comparisons can be summarized as follows: 1) TDL populations primed in bulk MLI cultures (MLI-TDL) slowed some evidence of specific positive selection when tested immediately; MLI responses to specific alloantigens were both relatively large and accelerated in tempo, whereas responses to third party alloantigens were diminished but also accelerated in tempo. Specific GVH responses were more marked than in third party recipients but they were also decreased relative to normal, and displayed an abberant dose/response slope. MLI-TDL populations tested after they had been stored in syngeneic B rats showed clear evidence of stable-specific positive selection; specific MLI and GVH responses were enriched relative to third party responses and also in comparison to normal, unselected TDL populations. This finding indicates that GVH and MLI reactivity are probably both functional capacities of the same lymphocyte subpopulation since positive selection by one function (MLI) also enriched for a second (GVH). 2) Parental strain TDL activated in vivo in the systemic GVH reaction in irradiated F1 animals and recovered from the thoracic duct 3 to 4 days later (late GVH-TDL) consisted mainly of blast cells, however, in contrast to MLI-TDL these populations showed no evidence of positive selection when tested before or after parking in B rats. MLI responses to specific alloantigens were minimal, and greatly reduced in magnitude compared to normal. GVH responses to specific haplotypes could be detected, but these were not enriched compared to normal, despite the content in the late GVH-TDL populations of a significant proportion of blast cells presumably activated by host alloantigens. 3) Early collections (less than 40 hr) of parental strain GVH-TDL collected from F1 recipients contained no blast cells and showed impressive degrees of negative selection; they were markedly depleted of both GVH and MLI activity to specific alloantigens but displayed normal reactivity to third party alloantigens. Moreover, specific negative selection was persistent in these populations parked for several weeks in B rats, and indication that a specific subpopulation of reactive cells had been physically eliminated. 4) PHA responses of both MLI- and GVH-activated TDL populations tested either before or after parking in B rats were approximately normal on a per T cell basis...
Collapse
|
21
|
|
22
|
|
23
|
Marshak A. Distribution of topically applied compounds in relation to therapy of skin cancer. Am J Clin Pathol 1972; 57:118-21. [PMID: 5008888 DOI: 10.1093/ajcp/57.1.118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
|
24
|
Marshak A, Marshak C. Nucleic acids of bovine lymphosarcoma and normal thymus. Cancer Res 1968; 28:979-86. [PMID: 5694711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
|
25
|
Marshak A. The harmonic oscillator theory applied to the code translation problem. J Theor Biol 1967; 17:12-8. [PMID: 6055366 DOI: 10.1016/0022-5193(67)90015-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|
26
|
Marshak A, Mullock B. The composition of nuclear RNA of some bovine tissues. Cancer Res 1966; 26:26-35. [PMID: 5951789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
|
27
|
Affiliation(s)
- A. Marshak
- New York University College of Medicine and Division of Tuberculosis, USPHS
| |
Collapse
|
28
|
|
29
|
Affiliation(s)
- A Marshak
- Radiation Laboratory, University of California
| | | |
Collapse
|
30
|
|
31
|
|