26
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Snelling WM, Chiu R, Schein JE, Hobbs M, Abbey CA, Adelson DL, Aerts J, Bennett GL, Bosdet IE, Boussaha M, Brauning R, Caetano AR, Costa MM, Crawford AM, Dalrymple BP, Eggen A, Everts-van der Wind A, Floriot S, Gautier M, Gill CA, Green RD, Holt R, Jann O, Jones SJM, Kappes SM, Keele JW, de Jong PJ, Larkin DM, Lewin HA, McEwan JC, McKay S, Marra MA, Mathewson CA, Matukumalli LK, Moore SS, Murdoch B, Nicholas FW, Osoegawa K, Roy A, Salih H, Schibler L, Schnabel RD, Silveri L, Skow LC, Smith TPL, Sonstegard TS, Taylor JF, Tellam R, Van Tassell CP, Williams JL, Womack JE, Wye NH, Yang G, Zhao S. A physical map of the bovine genome. Genome Biol 2008; 8:R165. [PMID: 17697342 PMCID: PMC2374996 DOI: 10.1186/gb-2007-8-8-r165] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2007] [Revised: 07/20/2007] [Accepted: 08/14/2007] [Indexed: 11/10/2022] Open
Abstract
A new physical map of the bovine genome has been constructed by integrating data from genetic and radiation hybrid maps, and a new bovine BAC map, with the bovine genome draft assembly. Background Cattle are important agriculturally and relevant as a model organism. Previously described genetic and radiation hybrid (RH) maps of the bovine genome have been used to identify genomic regions and genes affecting specific traits. Application of these maps to identify influential genetic polymorphisms will be enhanced by integration with each other and with bacterial artificial chromosome (BAC) libraries. The BAC libraries and clone maps are essential for the hybrid clone-by-clone/whole-genome shotgun sequencing approach taken by the bovine genome sequencing project. Results A bovine BAC map was constructed with HindIII restriction digest fragments of 290,797 BAC clones from animals of three different breeds. Comparative mapping of 422,522 BAC end sequences assisted with BAC map ordering and assembly. Genotypes and pedigree from two genetic maps and marker scores from three whole-genome RH panels were consolidated on a 17,254-marker composite map. Sequence similarity allowed integrating the BAC and composite maps with the bovine draft assembly (Btau3.1), establishing a comprehensive resource describing the bovine genome. Agreement between the marker and BAC maps and the draft assembly is high, although discrepancies exist. The composite and BAC maps are more similar than either is to the draft assembly. Conclusion Further refinement of the maps and greater integration into the genome assembly process may contribute to a high quality assembly. The maps provide resources to associate phenotypic variation with underlying genomic variation, and are crucial resources for understanding the biology underpinning this important ruminant species so closely associated with humans.
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Affiliation(s)
- Warren M Snelling
- USDA, ARS, US Meat Animal Research Center, Clay Center, NE 68933, USA
| | - Readman Chiu
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Jacqueline E Schein
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Matthew Hobbs
- Cooperative Research Centre for Innovative Dairy Products, Reprogen, Faculty of Veterinary Science, University of Sydney, NSW 2006, Australia
| | | | | | - Jan Aerts
- Roslin Institute, Roslin, Midlothian EH25 9PS, UK
| | - Gary L Bennett
- USDA, ARS, US Meat Animal Research Center, Clay Center, NE 68933, USA
| | - Ian E Bosdet
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Mekki Boussaha
- INRA, UR339 Laboratoire de Génétique Biochimique et de Cytogénétique, 78350 Jouy-en-Josas, France
| | | | - Alexandre R Caetano
- Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao Biologica, Final Av. W/5 Norte, Brasilia-DF, CP 02372 70770-900, Brasil
| | - Marcos M Costa
- Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao Biologica, Final Av. W/5 Norte, Brasilia-DF, CP 02372 70770-900, Brasil
| | | | - Brian P Dalrymple
- CSIRO Livestock Industries, Carmody Road, St Lucia, Queensland 4067, Australia
| | - André Eggen
- INRA, UR339 Laboratoire de Génétique Biochimique et de Cytogénétique, 78350 Jouy-en-Josas, France
| | | | - Sandrine Floriot
- INRA, UR339 Laboratoire de Génétique Biochimique et de Cytogénétique, 78350 Jouy-en-Josas, France
| | - Mathieu Gautier
- INRA, UR339 Laboratoire de Génétique Biochimique et de Cytogénétique, 78350 Jouy-en-Josas, France
| | - Clare A Gill
- Texas A&M University, College Station, TX 77843, USA
| | - Ronnie D Green
- USDA-ARS - National Program Staff, Beltsville, MD 20705-5134, USA
| | - Robert Holt
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Oliver Jann
- Roslin Institute, Roslin, Midlothian EH25 9PS, UK
| | - Steven JM Jones
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Steven M Kappes
- USDA-ARS - National Program Staff, Beltsville, MD 20705-5134, USA
| | - John W Keele
- USDA, ARS, US Meat Animal Research Center, Clay Center, NE 68933, USA
| | - Pieter J de Jong
- Children's Hospital Oakland Research Institute, Oakland, California 94609, USA
| | - Denis M Larkin
- Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Harris A Lewin
- Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | | | - Stephanie McKay
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta T6G 2P5, Canada
| | - Marco A Marra
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Carrie A Mathewson
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | | | - Stephen S Moore
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta T6G 2P5, Canada
| | - Brenda Murdoch
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta T6G 2P5, Canada
| | - Frank W Nicholas
- Cooperative Research Centre for Innovative Dairy Products, Reprogen, Faculty of Veterinary Science, University of Sydney, NSW 2006, Australia
| | - Kazutoyo Osoegawa
- Children's Hospital Oakland Research Institute, Oakland, California 94609, USA
| | - Alice Roy
- Genoscope, rue Gaston Cremieux, 91057 Evry, France
| | - Hanni Salih
- Texas A&M University, College Station, TX 77843, USA
| | - Laurent Schibler
- INRA, UR339 Laboratoire de Génétique Biochimique et de Cytogénétique, 78350 Jouy-en-Josas, France
| | - Robert D Schnabel
- Animal Science Research Center, Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Licia Silveri
- Istituto di Zootecnica Università Cattolica del S Cuore, via E Parmense, 84 29100 Piacenza, Italy
| | - Loren C Skow
- Texas A&M University, College Station, TX 77843, USA
| | - Timothy PL Smith
- USDA, ARS, US Meat Animal Research Center, Clay Center, NE 68933, USA
| | - Tad S Sonstegard
- USDA, ARS, BARC Bovine Functional Genomics Laboratory, Maryland, USA
| | - Jeremy F Taylor
- Animal Science Research Center, Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Ross Tellam
- CSIRO Livestock Industries, Carmody Road, St Lucia, Queensland 4067, Australia
| | | | - John L Williams
- Roslin Institute, Roslin, Midlothian EH25 9PS, UK
- Current address: Parco Tecnologico Padano, Via Einstein, Polo Universitario, Lodi 26900, Italy
| | | | - Natasja H Wye
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - George Yang
- Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Shaying Zhao
- The Institute for Genomic Research, Rockville, Maryland 20850, USA
- Current address: Department of Biochemistry and Molecular Biology, University of Georgia, Green Street, Athens, GA 30602-7229, USA
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44
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Maddox JF, Davies KP, Crawford AM, Hulme DJ, Vaiman D, Cribiu EP, Freking BA, Beh KJ, Cockett NE, Kang N, Riffkin CD, Drinkwater R, Moore SS, Dodds KG, Lumsden JM, van Stijn TC, Phua SH, Adelson DL, Burkin HR, Broom JE, Buitkamp J, Cambridge L, Cushwa WT, Gerard E, Galloway SM, Harrison B, Hawken RJ, Hiendleder S, Henry HM, Medrano JF, Paterson KA, Schibler L, Stone RT, van Hest B. An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Res 2001; 11:1275-89. [PMID: 11435411 PMCID: PMC311104 DOI: 10.1101/gr.gr-1350r] [Citation(s) in RCA: 192] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
A medium-density linkage map of the ovine genome has been developed. Marker data for 550 new loci were generated and merged with the previous sheep linkage map. The new map comprises 1093 markers representing 1062 unique loci (941 anonymous loci, 121 genes) and spans 3500 cM (sex-averaged) for the autosomes and 132 cM (female) on the X chromosome. There is an average spacing of 3.4 cM between autosomal loci and 8.3 cM between highly polymorphic [polymorphic information content (PIC) > or = 0.7] autosomal loci. The largest gap between markers is 32.5 cM, and the number of gaps of > 20 cM between loci, or regions where loci are missing from chromosome ends, has been reduced from 40 in the previous map to 6. Five hundred and seventy-three of the loci can be ordered on a framework map with odds of > 1000 : 1. The sheep linkage map contains strong links to both the cattle and goat maps. Five hundred and seventy-two of the loci positioned on the sheep linkage map have also been mapped by linkage analysis in cattle, and 209 of the loci mapped on the sheep linkage map have also been placed on the goat linkage map. Inspection of ruminant linkage maps indicates that the genomic coverage by the current sheep linkage map is comparable to that of the available cattle maps. The sheep map provides a valuable resource to the international sheep, cattle, and goat gene mapping community.
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Affiliation(s)
- Jillian F. Maddox
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Kizanne P. Davies
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Allan M. Crawford
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Dennis J. Hulme
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Daniel Vaiman
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Edmond P. Cribiu
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Bradley A. Freking
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Ken J. Beh
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Noelle E. Cockett
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Nina Kang
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Christopher D. Riffkin
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Roger Drinkwater
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Stephen S. Moore
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Ken G. Dodds
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Joanne M. Lumsden
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Tracey C. van Stijn
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Sin H. Phua
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - David L. Adelson
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Heather R. Burkin
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Judith E. Broom
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Johannes Buitkamp
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Lisa Cambridge
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - William T. Cushwa
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Emily Gerard
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Susan M. Galloway
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Blair Harrison
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Rachel J. Hawken
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Stefan Hiendleder
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Hannah M. Henry
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Juan F. Medrano
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Korena A. Paterson
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Laurent Schibler
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Roger T. Stone
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
| | - Beryl van Hest
- Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia; AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand; CSIRO Animal Production, Blacktown 2148, Australia; Institut National de la Recherche Agronomique (INRA), Department de Génétique Animale, 78350 Jouy-en-Josas, France; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933-0166, USA; Utah State University, Logan, Utah 84322–4700, USA; CSIRO Tropical Agriculture, St Lucia 4072, Australia; Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany; Department of Animal Breeding and Genetics, Justus-Liebig-University, D-35390 Giessen, Germany; Department of Animal Science, University of California, Davis, California 95616-8521, USA
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