Spectroscopic profiling, DFT computations, molecular docking and molecular dynamic simulation of biologically active 5-isoquinolinesulfonic acid

The title compound 5-isoquinolinesulfonic acid (5IQSA) is characterized using the FT-IR, FT-Raman, NMR and UV-Vis spectra. The optimized molecular geometry, vibrational assignments, infrared intensities and Raman scattering are precisely calculated using Density Functional Theory (DFT) with the B3LYP/6-311++G(d,p) basis set. The ¹H and ¹³C NMR chemical shifts are computed and compared with the experimental data. The TD-DFT/M062X/6-311++G(d,p) method is used to compute UV-Vis for different solvents, and the results are compared to UV-Vis spectra obtained experimentally. The HOMO-LUMO band gap energy is calculated for various solvents and compared to the band gap of UV-Vis spectra. Molecular dynamics simulations are used to investigate the biomolecular stability. Non-Linear Optical (NLO) behaviour has been illustrated using hyperpolarizability calculations. Topological studies such as Reduced Gradient Density (RDG), Electron Localization Function (ELF) and Localized Orbital Locator (LOL) are performed. The Molecular Electrostatic Potential (MEP), Natural Bond Orbital (NBO) analysis, Fukui functions and thermodynamic properties were analysed. To explore the biological behaviour of the examined compound, molecular docking was performed to evaluate the hydrogen bond distance and binding energies with (2XA4) kinase inhibitor protein.Communicated by Ramaswamy H. Sarma.

Existence of SARS-CoV-2 RNA on ambient particulate matter samples: A nationwide study in Turkey

Coronavirus disease 2019 (COVID-19) is caused by the SARS-CoV-2 virus and has been affecting the world since the end of 2019. The disease led to significant mortality and morbidity in Turkey, since the first case was reported on March 11th, 2020. Studies suggest a positive association between air pollution and SARS-CoV-2 infection. The aim of the present study was to investigate the role of ambient particulate matters (PM), as potential carriers for SARS-CoV-2. Ambient PM samples in various size ranges were collected from 13 sites including urban and urban-background locations and hospital gardens in 10 cities across Turkey between 13th of May and 14th of June 2020 to investigate the possible presence of SARS-CoV-2 RNA on ambient PM. A total of 203 daily samples (TSP, n = 80; PM_2.5, n = 33; PM_2.5-10, n = 23; PM₁₀μm, n = 19; and 6 size segregated PM, n = 48) were collected using various samplers. The N1 gene and RdRP gene expressions were analyzed for the presence of SARS-CoV-2, as suggested by the Centers for Disease Control and Prevention (CDC). According to real time (RT)-PCR and three-dimensional (3D) digital (d) PCR analysis, dual RdRP and N1 gene positivity were detected in 20 (9.8%) samples. Ambient PM-bound SARS-CoV-2 was analyzed quantitatively and the air concentrations of the virus ranged from 0.1 copies/m³ to 23 copies/m³. The highest percentages of virus detection on PM samples were from hospital gardens in Tekirdağ, Zonguldak, and Istanbul, especially in PM_2.5 mode. Findings of this study have suggested that SARS-CoV-2 may be transported by ambient particles, especially at sites close to the infection hot-spots. However, whether this has an impact on the spread of the virus infection remains to be determined.

Vibrational spectroscopy, quantum computational and molecular docking studies on 2-chloroquinoline-3-carboxaldehyde

The quantum mechanical density functional theory (DFT) approach was used to analyze vibrational spectroscopy for the title compound 2-chloroquinoline-3-carboxaldehyde, and the observations were compared to experimental results. B3LYP with the 6-311++ G (d, p) basis set produces the optimized molecular structure and vibrational assignments. The charge delocalization and hyper conjugative interactions were studied using NBO analysis. Fukui functions were used to determine the chemical reactivity of the examined molecule. The linear polarizability, first order polarizability, NLO and Thermodynamic properties are calculated. Additionally, Molecular electrostatic potential (MEP) and HOMO-LUMO are reported. Multi wavefunction analysis like ELF (Electron Localization Function) and LOL (Localized Orbital Locator) are analyzed. For the headline compound, drug-likeness properties were examined. Molecular docking analysis on the examined molecule are done to understand the biological functions of the headline molecule and the minimum binding energy, hydrogen bond interactions, are analyzed.

Vacuum-assisted thermal drying of wastewater treatment sludge

Sludge drying is one of the main problems of wastewater treatment plants. It is very important to facilitate the drying process in terms of drying efficiency, time duration, and cost of the processes, so that transportation and dumping of sludge will accordingly be realized effectively. In this study, vacuum assisted thermal drying was studied. Under vacuum conditions, the water content of the sludge was examined easier than at atmospheric pressure in the drying process. For this reason, in this study, time, temperature, and sludge mass surface area on drying efficiency were evaluated under two different pressure levels, such as 30 mbar and 1,000 mbar. To optimize these parameters, the Response Surface Methodology approach was utilized. Results showed that the effect of vacuum condition on sludge drying was remarkable at obtaining at least 65% of solid material ratio in sludge, which is the lowest limit value on landfilling legislation in Turkey. Data obtained from the study shows that, especially at high temperatures, contribution on sludge drying of vacuum condition is more effective in terms of drying time. A smaller sludge surface area is also found more significant on vacuum drying.Implications: Drying the sludge under low pressure shortens the drying time. It is possible to reach higher solid material ratio under low pressure. Time, temperature, and surface areas of sludge are effective parameters in vacuum drying.

Investigation of geospatial distribution of PAH compounds in soil phase and determination of soil-air exchange direction in a megacity

In this study, determination of possible sources, soil-air exchange direction, and spatial distribution of PAH concentrations was aimed. In this scope, soil samples were collected from 35 different points, which have the urban and rural characteristics, from European and Asian Sides in Istanbul. The average ∑₁₆PAH concentrations were found as 22.11 ng/g dw for urban site and 19.53 ng/g dw for rural site, respectively. The highest concentration was 279.5 ng/g dw. PAH concentrations were higher in urban site than rural site. Acenaphthene and benzo[k]fluoranthene were observed as the dominant species. PAH concentrations are observed higher mostly in north and west parts of European Side and south and east parts of Asian Side. There was net evaporation from soil to air for lower molecular weight PAHs with 2, 3 rings, while high molecular weight PAHs with 4, 5, 6 rings accumulated in the soil at both urban and rural sites. PAHs were mostly originated from coal burning and the use of diesel engine vehicles.

Evaluation of background soil and air polychlorinated biphenyl (PCB) concentrations on a hill at the outskirts of a metropolitan city

Air and soil sampling was conducted inside a forested area for 22 months. The sampling location is situated to the north of a metropolitan city. Average atmospheric gas and particle concentrations were found to be 180 and 28 pg m(-3) respectively, while that of soil phase was detected to be 3.2 ng g(-1) on dry matter, The congener pairs of PCB#4-10 had the highest contribution to each medium. TEQ concentration was 0.10 pg m(-3), 0.07 pg m(-3), 21.92 pg g(-1), for gas, particle and soil phases, respectively. PCB#126 and PCB#169 contributed to over 99% of the entire TEQ concentrations for each medium. Local sources were investigated by conditional probability function (CPF) and soil/air fugacity. Landfilling area and medical waste incinerator, located to the 8 km northeast, contributed to ambient concentrations, especially in terms of dioxin-like congeners. The industrial settlement (called Dilovasi being to the east southeast of 60 km distant) contributed from southeast direction. Further sources were identified by potential source contribution function (PSCF). Sources at close proximity had high contribution. Air mass transportation from Aliaga industrial region (being to the southwest of 300 km distant) moderately contributed to ambient concentrations. Low molecular weight congeners were released from soil body. 5-CBs and 6-CBs were close to equilibrium state between soil/air interfaces. PCB#171 was close to equilibrium and PCB#180 was likely to evaporate from soil, which constitute 7-CBs. PCB#199, representing 8-CBs deposited to soil. 9-CB (PCB#207) was in equilibrium between soil and air phases.

Gas/particle partitioning of PCDD/F compounds in the atmosphere of Istanbul

Gas/particle partitioning of polychlorinated dibenzo-p-dioxin (PCDD) and polychlorinated dibenzofuran (PCDF) compounds in the ambient atmosphere were investigated at three different sites (urban-industrial, urban and sub-urban) in İstanbul. Average gas and particle phase concentrations were measured as 133fgm(-3) and 1605fgm(-3), respectively. Gas phase concentrations of polychlorinated dibenzo-p-dioxin/furan (PCDD/F) compounds were determined to be 128fgm(-3), 50fgm(-3), 153fgm(-3) during summer season and 204fgm(-3), 164fgm(-3), 154fgm(-3) during winter season for the respective three sampling sites. Particle phase concentrations were determined to be 287fgm(-3), 176fgm(-3), 160fgm(-3) during summer and 6586fgm(-3), 2570fgm(-3) and 1861fgm(-3) during winter season for those three sampling sites. Chlorination level and molecular weight of congeners affected gas/particle partitioning of PCDD/F compounds. Gas phase percentages of 2,3,7,8-TCDD and OCDD concentrations were determined to be 47% and 1% respectively. A relatively high correlation was found between total particle matter (TPM) and particle phase PCDD/F concentration during winter season.

Investigation of temporal and spatial variations in atmospheric concentrations of PCDDs and PCDFs in Istanbul

In this study, temporal and spatial variations of the atmospheric concentrations of polychlorinated-p-dibenzo dioxin (PCDDs) and polychlorinated dibenzofuran (PCDFs) congeners were investigated in Istanbul at three different locations. The highest average concentration (3481 fg/m(3)) was observed at the sampling location which is characterized by mixed source groups during colder months. The lowest average concentration (749 fg/m(3)) was observed at sampling station which is characterized by semi-urban characteristics. ∑PCDD/F concentration showed seasonal variation in this study. The highest average concentration was determined to be 4373 fg/m(3) in winter while the lowest average concentration was determined to be 498 fg/m(3) in summer.

Seasonal variation of PCDD/Fs in the metropolis of Istanbul, Turkey

Atmospheric concentrations of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/F) compounds were investigated at three different regions of Istanbul which reflect urban, urban/industrial, and sub-urban characteristics. Air samples were collected simultaneously for both gaseous and particulate phases using high volume samplers on monthly time intervals from May 2011 to October 2012. The highest concentrations (3,056 fg/m(3) and 156 fg I-TEQ/m(3)) were observed at the sampling site that reflects traffic, residential, and industrial emission source characteristics, while the lowest concentrations (829 fg/m(3) and 38 fg I-TEQ/m(3)) were observed at the sampling point which is far away from centrum and reflects sub-urban characteristics. Concentrations of PCDD congeners were, in general, found to be higher than PCDF congeners, and OCDD, 1,2,3,4,6,7,8-HpCDD/F, and OCDF congeners were recorded to be the most abundant congeners. Winter season concentrations were also found to be higher especially in particulate phase. As a result, combustion processes such as motor vehicles and residential heating equipment were thought to be the principal sources of emissions of PCDD/F compounds when both congener profiles and seasonal variations are considered. Basic statistical evaluation of the data resembled high degree of inverse correlations between PCDD/F concentrations and UV and solar radiation.

Ambient polychlorinated biphenyl levels and their evaluation in a metropolitan city

In this study, summer and autumn ambient PCB concentrations were investigated in metropolitan city of Istanbul. 84 congeners were targeted from di-CBs to nona-CBs on both particle and gaseous phases. Gaseous ambient concentrations were determined to be 372 ± 134 pg·m(-3), while on the particle phase this value was 49 ± 17 pg·m(-3), corresponding to an average of 420 pg·m(-3). About one-tenth of all PCBs lay in ambient aerosols, while 90% of all comprise 2-, 3-, 4-, and 5-CBs. Measured ambient concentrations of each congener group were tested against meteorological data. The di-CB concentrations were independent of ambient temperature while northerly winds lead to an increase in their concentrations, which was an indicator of considerable contribution to di-CB concentrations from the medical waste incineration plant in Istanbul. In contrast, other congeners' concentrations were found to be correlated with southerly winds. Being an inland sea and having been contaminated, for years, by industrial discharges along the coastline, volatilization from Marmara Sea was considered as the most probable source of other congeners. PSCF analysis was run with 12-hour trajectories to locate possible local sources and check these results. Gas/particle partitioning was applied using three different models. mr and br values for log PL(0) model were determined as -0.23 ± 0.09 and -3.25 ± 0.38, respectively. For absorption based log Koa model, m and b values were calculated as 0.23 ± 0.08 and -4.73 ± 0.83, respectively.

A detailed investigation of ambient aerosol composition and size distribution in an urban atmosphere

This research was executed between March 2009 and March 2010 to monitor particulate matter size distribution and its composition in Istanbul. Particulate matter composition was determined using ion chromatography and inductively coupled plasma optical emission spectrometry. The sampling point is adjacent to a crowded road and the Bosporus Strait. Two prevailing particulate modes are found throughout PM10 by sampling with a nine-stage low-volume cascade impactor. First mode in the fine mode is found to be between 0.43 and 0.65 μm, whereas the other peak was observed between 3.3 and 4.7 μm, referring to the coarse mode. The mean PM10 concentration was determined as 41.2 μg/m(3), with a standard deviation of 16.92 μg/m(3). PM0.43 had the highest mean concentration value of 10.67 μg/m(3), making up nearly one fourth of the total PM10 mass. For determining the effect of traffic on particulate matter (PM) composition and distribution, four different sampling cycles were applied: entire day, nighttime, rush hour, and rush hour at weekdays. SO4(-2) and organic carbon/elemental carbon proportions are found to be lower in night samples, representing a decrease in traffic. The long-range transports of dust storms were observed during the sampling periods. Their effects were determined analytically and their route models were run by the HYSPLIT model and validated through satellite photographs taken by the NASA Earth Observatory.

Effect of diurnal changes in VOC source strengths on performances of receptor models

INTRODUCTION

The effect of diurnal changes in strengths of volatile organic compound (VOC) sources on the performances of positive matrix factorization (PMF) and principal component analysis (PCA) was investigated using ambient measurement results that were taken during daytime and nighttime hours between March 24 and May 14, 2011, within Davutpasa Campus of Yildiz Technical University (Istanbul, Turkey).

METHODS

Forty-five VOC species, ranging from C(5) to C(11) in volatility, were measured in the samples, 40 of which are included in the analyses. Ambient samples were grouped as daytime, nighttime, and all day datasets, and both PMF and PCA were applied to each dataset. A total of six source groups were extracted from each dataset: solvent use, general industrial paint use, gasoline and diesel vehicle exhausts, and biogenic as well as evaporative emissions. Estimated source contributions showed great diurnal variations.

RESULTS

The results suggested that extraction of possible sources by PCA depends greatly on the number of samples and the strength of the sources, while PMF produced stable results regardless of number of samples and source strengths.

CONCLUSION

Although PMF was unable to resolve gasoline vehicle and evaporative emissions, it was found to be successful in explaining diurnal fluctuations in source strengths, while the performance of PCA depends on the strength of emission source.

Assessment of odorous VOCs released from a main MSW landfill site in Istanbul-Turkey via a modelling approach

An air pollution modeling study was conducted to investigate the odorous effects of volatile organic compounds (VOCs) emissions from a sanitary landfill area on ambient air quality. The atmospheric dispersion of hydrogen sulfide (H(2)S) and 22 VOCs was modeled. Industrial Source Complex v3 Short Term (ISCST3) model was used to estimate hourly concentrations of odorous VOCs over the nearest residential area. Odor thresholds of VOCs of interest were also found in the literature. Results showed that short-term averages of three odorous VOCs, namely ethyl mercaptan, methyl mercaptan and hydrogen sulfide, exceeded their odor thresholds, which are reported to be 0.022, 0.138 and 11.1 microg/m(3), respectively, at several points within the domain. Their highest concentrations within Gokturk County were estimated to be 0.09387 microg/m(3) for ethyl mercaptan, 0.07934 microg/m(3) for methyl mercaptan and 6.315 microg/m(3) for hydrogen sulfide. Short-term model results revealed the occasional odor problems being reported for Gokturk County. Hourly concentrations were used to obtain frequencies of odor episodes in Gokturk County via a probability analysis. The results showed that ethyl mercaptan concentrations did not exceed its odor threshold during more than 8.84% of the time. Similarly, the maximum odor episode frequencies for methyl mercaptan and hydrogen sulfide were 0.98% and 0.34% of the time, respectively.

The respiratory effects of occupational polypropylene flock exposure

The present study evaluated the possible effects of exposure to polypropylene flock on respiratory health and serum cytokines in a cross-sectional study of workers from a plant in Turkey. A total of 50 polypropylene flocking workers were compared to a control group of 45 subjects. All subjects filled out a respiratory questionnaire and underwent a physical examination, a chest radiograph and pulmonary function testing, including single breath carbon monoxide diffusing capacity (DL,CO). Serum interleukin-8 (IL-8) and tumour necrosis factor-alpha (TNF-alpha) were measured. Additionally, high resolution computed tomography (HRCT) of the chest was performed in 10 exposed workers with low DL,CO. Work-related respiratory symptoms were reported in 26% of the exposed subjects and in 13.3% of the controls. Logistic regression analysis showed that the risk of respiratory symptoms increased 3.6 fold in polypropylene flocking workers when compared to controls. Parameters of the study group, including per cent predicted: forced vital capacity, forced expiratory volume in one second, forced mid-expiratory flow 25-75% and DL,CO, were significantly lower than in controls. Multivariate analyses showed that being a polypropylene flocking worker was a predictive factor for impairment of pulmonary function. Serum IL-8 and TNF-alpha levels were increased in the study group compared with the controls. HRCT revealed peribronchial thickening and diffuse ground glass attenuation in some subjects. The present study suggests the presence of subtle or the beginning of interstitial lung disease in these polypropylene flocking workers.