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Hayashi S, Caron BA, Heinsfeld AS, Vinci-Booher S, McPherson B, Bullock DN, Bertò G, Niso G, Hanekamp S, Levitas D, Ray K, MacKenzie A, Avesani P, Kitchell L, Leong JK, Nascimento-Silva F, Koudoro S, Willis H, Jolly JK, Pisner D, Zuidema TR, Kurzawski JW, Mikellidou K, Bussalb A, Chaumon M, George N, Rorden C, Victory C, Bhatia D, Aydogan DB, Yeh FCF, Delogu F, Guaje J, Veraart J, Fischer J, Faskowitz J, Fabrega R, Hunt D, McKee S, Brown ST, Heyman S, Iacovella V, Mejia AF, Marinazzo D, Craddock RC, Olivetti E, Hanson JL, Garyfallidis E, Stanzione D, Carson J, Henschel R, Hancock DY, Stewart CA, Schnyer D, Eke DO, Poldrack RA, Bollmann S, Stewart A, Bridge H, Sani I, Freiwald WA, Puce A, Port NL, Pestilli F. Author Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nat Methods 2024:10.1038/s41592-024-02296-5. [PMID: 38714873 DOI: 10.1038/s41592-024-02296-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Affiliation(s)
| | - Bradley A Caron
- Indiana University, Bloomington, IN, USA
- The University of Texas, Austin, TX, USA
| | | | - Sophia Vinci-Booher
- Indiana University, Bloomington, IN, USA
- Vanderbilt University, Nashville, TN, USA
| | - Brent McPherson
- Indiana University, Bloomington, IN, USA
- McGill University, Montréal, Quebec, Canada
| | | | | | - Guiomar Niso
- Indiana University, Bloomington, IN, USA
- Cajal Institute, CSIC, Madrid, Spain
| | | | - Daniel Levitas
- Indiana University, Bloomington, IN, USA
- The University of Texas, Austin, TX, USA
| | | | | | | | - Lindsey Kitchell
- Indiana University, Bloomington, IN, USA
- Applied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA
| | - Josiah K Leong
- Indiana University, Bloomington, IN, USA
- University of Arkansas, Fayetteville, AR, USA
| | | | | | | | | | | | | | | | - Kyriaki Mikellidou
- University of Limassol, Nicosia, Cyprus
- University of Cyprus, Nicosia, Cyprus
| | - Aurore Bussalb
- Institut du Cerveau, CNRS, Sorbonne Université, Paris, France
| | | | - Nathalie George
- Institut du Cerveau, CNRS, Sorbonne Université, Paris, France
| | | | | | | | - Dogu Baran Aydogan
- University of Eastern Finland, Kuopio, Finland
- Aalto University School of Science, Espoo, Finland
| | | | - Franco Delogu
- Lawrence Technological University, Southfield, MI, USA
| | | | | | | | | | | | - David Hunt
- Indiana University, Bloomington, IN, USA
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Ashley Stewart
- University of Queensland, St Lucia, Queensland, Australia
| | | | - Ilaria Sani
- The Rockefeller University, New York, NY, USA
- University of Geneva, Geneva, Switzerland
| | | | - Aina Puce
- Indiana University, Bloomington, IN, USA
| | | | - Franco Pestilli
- Indiana University, Bloomington, IN, USA.
- The University of Texas, Austin, TX, USA.
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Hayashi S, Caron BA, Heinsfeld AS, Vinci-Booher S, McPherson B, Bullock DN, Bertò G, Niso G, Hanekamp S, Levitas D, Ray K, MacKenzie A, Avesani P, Kitchell L, Leong JK, Nascimento-Silva F, Koudoro S, Willis H, Jolly JK, Pisner D, Zuidema TR, Kurzawski JW, Mikellidou K, Bussalb A, Chaumon M, George N, Rorden C, Victory C, Bhatia D, Aydogan DB, Yeh FCF, Delogu F, Guaje J, Veraart J, Fischer J, Faskowitz J, Fabrega R, Hunt D, McKee S, Brown ST, Heyman S, Iacovella V, Mejia AF, Marinazzo D, Craddock RC, Olivetti E, Hanson JL, Garyfallidis E, Stanzione D, Carson J, Henschel R, Hancock DY, Stewart CA, Schnyer D, Eke DO, Poldrack RA, Bollmann S, Stewart A, Bridge H, Sani I, Freiwald WA, Puce A, Port NL, Pestilli F. brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nat Methods 2024; 21:809-813. [PMID: 38605111 PMCID: PMC11093740 DOI: 10.1038/s41592-024-02237-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 03/05/2024] [Indexed: 04/13/2024]
Abstract
Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.
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Affiliation(s)
| | - Bradley A Caron
- Indiana University, Bloomington, IN, USA
- The University of Texas, Austin, TX, USA
| | | | - Sophia Vinci-Booher
- Indiana University, Bloomington, IN, USA
- Vanderbilt University, Nashville, TN, USA
| | - Brent McPherson
- Indiana University, Bloomington, IN, USA
- McGill University, Montréal, Quebec, Canada
| | | | | | - Guiomar Niso
- Indiana University, Bloomington, IN, USA
- Cajal Institute, CSIC, Madrid, Spain
| | | | - Daniel Levitas
- Indiana University, Bloomington, IN, USA
- The University of Texas, Austin, TX, USA
| | | | | | | | - Lindsey Kitchell
- Indiana University, Bloomington, IN, USA
- Applied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA
| | - Josiah K Leong
- Indiana University, Bloomington, IN, USA
- University of Arkansas, Fayetteville, AR, USA
| | | | | | | | | | | | | | | | - Kyriaki Mikellidou
- University of Limassol, Nicosia, Cyprus
- University of Cyprus, Nicosia, Cyprus
| | - Aurore Bussalb
- Institut du Cerveau, CNRS, Sorbonne Université, Paris, France
| | | | - Nathalie George
- Institut du Cerveau, CNRS, Sorbonne Université, Paris, France
| | | | | | | | - Dogu Baran Aydogan
- University of Eastern Finland, Kuopio, Finland
- Aalto University School of Science, Espoo, Finland
| | | | - Franco Delogu
- Lawrence Technological University, Southfield, MI, USA
| | | | | | | | | | | | - David Hunt
- Indiana University, Bloomington, IN, USA
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Ashley Stewart
- University of Queensland, St Lucia, Queensland, Australia
| | | | - Ilaria Sani
- The Rockefeller University, New York, NY, USA
- University of Geneva, Geneva, Switzerland
| | | | - Aina Puce
- Indiana University, Bloomington, IN, USA
| | | | - Franco Pestilli
- Indiana University, Bloomington, IN, USA.
- The University of Texas, Austin, TX, USA.
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Hayashi S, Caron BA, Heinsfeld AS, Vinci-Booher S, McPherson B, Bullock DN, Bertò G, Niso G, Hanekamp S, Levitas D, Ray K, MacKenzie A, Kitchell L, Leong JK, Nascimento-Silva F, Koudoro S, Willis H, Jolly JK, Pisner D, Zuidema TR, Kurzawski JW, Mikellidou K, Bussalb A, Rorden C, Victory C, Bhatia D, Baran Aydogan D, Yeh FCF, Delogu F, Guaje J, Veraart J, Bollman S, Stewart A, Fischer J, Faskowitz J, Chaumon M, Fabrega R, Hunt D, McKee S, Brown ST, Heyman S, Iacovella V, Mejia AF, Marinazzo D, Craddock RC, Olivetti E, Hanson JL, Avesani P, Garyfallidis E, Stanzione D, Carson J, Henschel R, Hancock DY, Stewart CA, Schnyer D, Eke DO, Poldrack RA, George N, Bridge H, Sani I, Freiwald WA, Puce A, Port NL, Pestilli F. brainlife.io: A decentralized and open source cloud platform to support neuroscience research. ArXiv 2023:arXiv:2306.02183v3. [PMID: 37332566 PMCID: PMC10274934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
Abstract
Neuroscience research has expanded dramatically over the past 30 years by advancing standardization and tool development to support rigor and transparency. Consequently, the complexity of the data pipeline has also increased, hindering access to FAIR data analysis to portions of the worldwide research community. brainlife.io was developed to reduce these burdens and democratize modern neuroscience research across institutions and career levels. Using community software and hardware infrastructure, the platform provides open-source data standardization, management, visualization, and processing and simplifies the data pipeline. brainlife.io automatically tracks the provenance history of thousands of data objects, supporting simplicity, efficiency, and transparency in neuroscience research. Here brainlife.io's technology and data services are described and evaluated for validity, reliability, reproducibility, replicability, and scientific utility. Using data from 4 modalities and 3,200 participants, we demonstrate that brainlife.io's services produce outputs that adhere to best practices in modern neuroscience research.
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