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Mazumder R, Schroeder S, Clymer BD, White RD, Kolipaka A. Quantification of myocardial stiffness in heart failure with preserved ejection fraction porcine model using magnetic resonance elastography. J Cardiovasc Magn Reson 2016. [PMCID: PMC5032527 DOI: 10.1186/1532-429x-18-s1-p29] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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Mazumder R, Schroeder S, Mo X, Clymer BD, White RD, Kolipaka A. In vivo quantification of myocardial stiffness in hypertensive porcine hearts using MR elastography. J Magn Reson Imaging 2016; 45:813-820. [PMID: 27564862 DOI: 10.1002/jmri.25423] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Accepted: 07/29/2016] [Indexed: 12/24/2022] Open
Abstract
PURPOSE To determine alteration in left ventricular (LV) myocardial stiffness (MS) with hypertension (HTN). Cardiac MR elastography (MRE) was used to estimate MS in HTN induced pigs and MRE-derived MS measurements were compared against LV pressure, thickness and circumferential strain. MATERIALS AND METHODS Renal-wrapping surgery was performed to induce HTN in eight pigs. LV catheterization (to measure pressure) and cardiac MRI (1.5 Tesla; gradient echo-MRE and tagging) was performed pre-surgery at baseline (Bx), and post-surgery at month 1 (M1) and month 2 (M2). Images were analyzed to estimate LV-MS, thickness, and circumferential strain across the cardiac cycle. The associations between end-diastolic (ED) and end-systolic (ES) MS and (i) mean LV pressure; (ii) ED and ES thickness, respectively; and (iii) circumferential strain were evaluated using Spearman's correlation method. RESULTS From Bx to M2, mean pressure, MRE-derived stiffness, and thickness increased while circumferential strain decreased significantly (slope test, P ≤ 0.05). Both ED and ES MS had significant positive correlation with (i) mean pressure (ED MS: ρ = 0.56; P = 0.005 and ES MS: ρ = 0.45; P = 0.03); (ii) ED thickness ( ρ = 0.73; P < 0.0001) and ES thickness ( ρ = 0.84; P < 0.0001), respectively; but demonstrated a negative trend with circumferential strain (ED MS: ρ = 0.31 and ES MS: ρ = 0.37). CONCLUSION This study demonstrated that, in a HTN porcine model, MRE-derived MS increased with increase in pressure and thickness. LEVEL OF EVIDENCE 1 J. Magn. Reson. Imaging 2017;45:813-820.
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Affiliation(s)
- Ria Mazumder
- Department of Electrical and Computer Engineering, 205 Dreese Laboratories, The Ohio State University, Columbus, Ohio, USA.,Department of Radiology, Room 460, The Ohio State University, Columbus, Ohio, USA.,Department of Biomedical Engineering, 265 Kirkbride Hall, Walnut Street, Widener University, Chester, PA
| | - Samuel Schroeder
- Department of Radiology, Room 460, The Ohio State University, Columbus, Ohio, USA.,Department of Mechanical Engineering, The Ohio State University, Columbus, Ohio, USA
| | - Xiaokui Mo
- Center for Biostatistics, Department of Biomedical Informatics, Room 320D, Lincoln Tower, Columbus, Ohio, USA
| | - Bradley D Clymer
- Department of Electrical and Computer Engineering, 205 Dreese Laboratories, The Ohio State University, Columbus, Ohio, USA
| | - Richard D White
- Department of Radiology, Room 460, The Ohio State University, Columbus, Ohio, USA.,Department of Internal Medicine-Division of Cardiovascular Medicine, 244 Davis Heart & Lung Research Institute, The Ohio State University, Columbus, Ohio, USA
| | - Arunark Kolipaka
- Department of Radiology, Room 460, The Ohio State University, Columbus, Ohio, USA.,Department of Internal Medicine-Division of Cardiovascular Medicine, 244 Davis Heart & Lung Research Institute, The Ohio State University, Columbus, Ohio, USA
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Mazumder R, Schroeder S, Mo X, Litsky AS, Clymer BD, White RD, Kolipaka A. In vivo magnetic resonance elastography to estimate left ventricular stiffness in a myocardial infarction induced porcine model. J Magn Reson Imaging 2016; 45:1024-1033. [PMID: 27533317 DOI: 10.1002/jmri.25432] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 08/04/2016] [Indexed: 11/06/2022] Open
Abstract
PURPOSE To estimate change in left ventricular (LV) end-systolic and end-diastolic myocardial stiffness (MS) in pigs induced with myocardial infarction (MI) with disease progression using cardiac magnetic resonance elastography (MRE) and to compare it against ex vivo mechanical testing, LV circumferential strain, and magnetic resonance imaging (MRI) relaxometry parameters (T1 , T2 , and extracellular volume fraction [ECV]). MATERIALS AND METHODS MRI (1.5T) was performed on seven pigs, before surgery (Bx), and 10 (D10), and 21 (D21) days after creating MI. Cardiac MRE-derived MS was measured in infarcted region (MIR) and remote region (RR), and validated against mechanical testing-derived MS obtained postsacrifice on D21. Circumferential strain and MRI relaxometry parameters (T2 , T1 , and ECV) were also obtained. Multiparametric analysis was performed to determine correlation between cardiac MRE-derived MS and 1) strain, 2) relaxometry parameters, and 3) mechanical testing. RESULTS Mean diastolic (D10: 5.09 ± 0.6 kPa; D21: 5.45 ± 0.7 kPa) and systolic (D10: 5.72 ± 0.8 kPa; D21: 6.34 ± 1.0 kPa) MS in MIR were significantly higher (P < 0.01) compared to mean diastolic (D10: 3.97 ± 0.4 kPa; D21: 4.12 ± 0.2 kPa) and systolic (D10: 5.08 ± 0.6 kPa; and D21: 5.16 ± 0.6 kPa) MS in RR. The increase in cardiac MRE-derived MS at D21 (MIR) was consistent and correlated strongly with mechanical testing-derived MS (r(diastolic) = 0.86; r(systolic) = 0.89). Diastolic MS in MIR demonstrated a negative correlation with strain (r = 0.58). Additionally, cardiac MRE-derived MS demonstrated good correlations with post-contrast T1 (r(diastolic) = -0.549; r(systolic) = -0.741) and ECV (r(diastolic) = 0.548; r(systolic) = 0.703), and no correlation with T2 . CONCLUSION As MI progressed, cardiac MRE-derived MS increased in MIR compared to RR, which significantly correlated with mechanical testing-derived MS, T1 and ECV. LEVEL OF EVIDENCE 1 J. Magn. Reson. Imaging 2017;45:1024-1033.
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Affiliation(s)
- Ria Mazumder
- Department of Electrical and Computer Engineering, 205 Dreese Laboratories, Ohio State University, Columbus, Ohio, USA.,Department of Radiology, Ohio State University, Columbus, Ohio, USA
| | - Samuel Schroeder
- Department of Radiology, Ohio State University, Columbus, Ohio, USA.,Department of Mechanical Engineering, Ohio State University, Columbus, Ohio, USA
| | - Xiaokui Mo
- Center for Biostatistics, Department of Biomedical Informatics, Columbus, Ohio, USA
| | - Alan S Litsky
- Department of Biomedical Engineering, Ohio State University, Columbus, Ohio, USA.,Department of Orthopaedics, Columbus, Ohio, USA
| | - Bradley D Clymer
- Department of Electrical and Computer Engineering, 205 Dreese Laboratories, Ohio State University, Columbus, Ohio, USA
| | - Richard D White
- Department of Radiology, Ohio State University, Columbus, Ohio, USA.,Department of Internal Medicine-Division of Cardiovascular Medicine, 244 Davis Heart & Lung Research Institute, Ohio State University, Columbus, Ohio, USA
| | - Arunark Kolipaka
- Department of Radiology, Ohio State University, Columbus, Ohio, USA.,Department of Internal Medicine-Division of Cardiovascular Medicine, 244 Davis Heart & Lung Research Institute, Ohio State University, Columbus, Ohio, USA
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Mazumder R, Choi S, Clymer BD, White RD, Kolipaka A. Diffusion Tensor Imaging of Healthy and Infarcted Porcine Hearts: Study on the Impact of Formalin Fixation. J Med Imaging Radiat Sci 2016; 47:74-85. [PMID: 26989451 PMCID: PMC4790101 DOI: 10.1016/j.jmir.2015.10.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
BACKGROUND Due to complexities of in-vivo cardiac diffusion tensor imaging (DTI), ex-vivo formalin-fixed specimens are used to investigate cardiac remodeling in diseases, and reported results have shown conflicting trends. This study investigates the impact of formalin-fixation on diffusion properties and optimizes tracking parameters based on controls to understand remodeling in myocardial-infarction (MI). METHODS DTI was performed on 4 healthy (controls) and 4 MI induced formalin-fixed (PoMI) ex-vivo porcine hearts. Controls were scanned pre-fixation (PrCtrl) and re-scanned (PoCtrl) after formalin-fixation. Fractional anisotropy (FA) and apparent diffusion coefficient (ADC) were estimated in all hearts. Tracking parameters (FA, tract termination angle (TTA), fiber-length) were optimized in controls and then used to investigate structural remodeling in PoMI hearts. RESULTS Fixation increased ADC and decreased FA. PoMI showed increased ADC but decreased FA in infarcted zone compared to remote zone. TTA showed sharp increase in slope from 5°-10°, which flattened after 25° in all groups. Mean fiber-length for different tracking length range showed that PoCtrl had shorter fibers compared to PrCtrl. Fibers around infarction were shorter in length and disarrayed compared to PoCtrl group. CONCLUSION Formalin-fixation affects diffusion properties and hence DTI parametric trends observed in pathology may be influenced by the fixation process which can cause contradictory findings.
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Affiliation(s)
- Ria Mazumder
- Department of Electrical and Computer Engineering, 205
Dreese Laboratories, 2015 Neil Avenue, The Ohio State University, Columbus, Ohio
43210, USA
| | - Seongjin Choi
- Department of Radiology, Room 460, 395 W. 12th Avenue, The
Ohio State University, Columbus, Ohio 43210, USA
| | - Bradley D. Clymer
- Department of Electrical and Computer Engineering, 205
Dreese Laboratories, 2015 Neil Avenue, The Ohio State University, Columbus, Ohio
43210, USA
| | - Richard D. White
- Department of Radiology, Room 460, 395 W. 12th Avenue, The
Ohio State University, Columbus, Ohio 43210, USA
- Department of Internal Medicine-Division of Cardiovascular
Medicine, 244 Davis Heart & Lung Research Institute, 473 W. 12th Avenue, The
Ohio State University, Columbus, Ohio 43210, USA
| | - Arunark Kolipaka
- Department of Radiology, Room 460, 395 W. 12th Avenue, The
Ohio State University, Columbus, Ohio 43210, USA
- Department of Internal Medicine-Division of Cardiovascular
Medicine, 244 Davis Heart & Lung Research Institute, 473 W. 12th Avenue, The
Ohio State University, Columbus, Ohio 43210, USA
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Mazumder R, Clymer BD, Mo X, White RD, Kolipaka A. Adaptive anisotropic gaussian filtering to reduce acquisition time in cardiac diffusion tensor imaging. Int J Cardiovasc Imaging 2016; 32:921-34. [PMID: 26843150 DOI: 10.1007/s10554-016-0848-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Accepted: 01/28/2016] [Indexed: 10/22/2022]
Abstract
Diffusion tensor imaging (DTI) is used to quantify myocardial fiber orientation based on helical angles (HA). Accurate HA measurements require multiple excitations (NEX) and/or several diffusion encoding directions (DED). However, increasing NEX and/or DED increases acquisition time (TA). Therefore, in this study, we propose to reduce TA by implementing a 3D adaptive anisotropic Gaussian filter (AAGF) on the DTI data acquired from ex-vivo healthy and infarcted porcine hearts. DTI was performed on ex-vivo hearts [9-healthy, 3-myocardial infarction (MI)] with several combinations of DED and NEX. AAGF, mean (AVF) and median filters (MF) were applied on the primary eigenvectors of the diffusion tensor prior to HA estimation. The performance of AAGF was compared against AVF and MF. Root mean square error (RMSE), concordance correlation-coefficients and Bland-Altman's technique was used to determine optimal combination of DED and NEX that generated the best HA maps in the least possible TA. Lastly, the effect of implementing AAGF on the infarcted porcine hearts was also investigated. RMSE in HA estimation for AAGF was lower compared to AVF or MF. Post-filtering (AAGF) fewer DED and NEX were required to achieve HA maps with similar integrity as those obtained from higher NEX and/or DED. Pathological alterations caused in HA orientation in the MI model were preserved post-filtering (AAGF). Our results demonstrate that AAGF reduces TA without affecting the integrity of the myocardial microstructure.
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Affiliation(s)
- Ria Mazumder
- Department of Electrical and Computer Engineering, The Ohio State University, 205 Dreese Laboratories, 2015 Neil Avenue, Columbus, OH, 43210, USA.,Department of Radiology, The Ohio State University, Room 460, 395 West 12th Avenue, 4th Floor, Columbus, OH, 43210, USA
| | - Bradley D Clymer
- Department of Electrical and Computer Engineering, The Ohio State University, 205 Dreese Laboratories, 2015 Neil Avenue, Columbus, OH, 43210, USA
| | - Xiaokui Mo
- Department of Biomedical Informatics, Center for Biostatistics, Room 320D, Lincoln Tower, 1800 Cannon Drive, Columbus, OH, 43210, USA
| | - Richard D White
- Department of Radiology, The Ohio State University, Room 460, 395 West 12th Avenue, 4th Floor, Columbus, OH, 43210, USA.,Division of Cardiovascular Medicine, Department of Internal Medicine, The Ohio State University, 244 Davis Heart and Lung Research Institute, 473 W. 12th Avenue, Columbus, OH, 43210, USA
| | - Arunark Kolipaka
- Department of Radiology, The Ohio State University, Room 460, 395 West 12th Avenue, 4th Floor, Columbus, OH, 43210, USA. .,Division of Cardiovascular Medicine, Department of Internal Medicine, The Ohio State University, 244 Davis Heart and Lung Research Institute, 473 W. 12th Avenue, Columbus, OH, 43210, USA.
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Del Rio CL, Clymer BD, Billman GE. Myocardial electrotonic response to submaximal exercise in dogs with healed myocardial infarctions: evidence for β-adrenoceptor mediated enhanced coupling during exercise testing. Front Physiol 2015; 6:25. [PMID: 25698976 PMCID: PMC4318283 DOI: 10.3389/fphys.2015.00025] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Accepted: 01/15/2015] [Indexed: 11/13/2022] Open
Abstract
INTRODUCTION Autonomic neural activation during cardiac stress testing is an established risk-stratification tool in post-myocardial infarction (MI) patients. However, autonomic activation can also modulate myocardial electrotonic coupling, a known factor to contribute to the genesis of arrhythmias. The present study tested the hypothesis that exercise-induced autonomic neural activation modulates electrotonic coupling (as measured by myocardial electrical impedance, MEI) in post-MI animals shown to be susceptible or resistant to ventricular fibrillation (VF). METHODS Dogs (n = 25) with healed MI instrumented for MEI measurements were trained to run on a treadmill and classified based on their susceptibility to VF (12 susceptible, 9 resistant). MEI and ECGs were recorded during 6-stage exercise tests (18 min/test; peak: 6.4 km/h @ 16%) performed under control conditions, and following complete β-adrenoceptor (β-AR) blockade (propranolol); MEI was also measured at rest during escalating β-AR stimulation (isoproterenol) or overdrive-pacing. RESULTS Exercise progressively increased heart rate (HR) and reduced heart rate variability (HRV). In parallel, MEI decreased gradually (enhanced electrotonic coupling) with exercise; at peak exercise, MEI was reduced by 5.3 ± 0.4% (or -23 ± 1.8Ω, P < 0.001). Notably, exercise-mediated electrotonic changes were linearly predicted by the degree of autonomic activation, as indicated by changes in either HR or in HRV (P < 0.001). Indeed, β-AR blockade attenuated the MEI response to exercise while direct β-AR stimulation (at rest) triggered MEI decreases comparable to those observed during exercise; ventricular pacing had no significant effects on MEI. Finally, animals prone to VF had a significantly larger MEI response to exercise. CONCLUSIONS These data suggest that β-AR activation during exercise can acutely enhance electrotonic coupling in the myocardium, particularly in dogs susceptible to ischemia-induced VF.
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Affiliation(s)
- Carlos L Del Rio
- Department of Physiology and Cell Biology, The Ohio State University Columbus, OH, USA ; Department of Electrical and Computer Engineering, The Ohio State University Columbus, OH, USA ; Safety Pharmacology, QTest Labs Columbus, OH, USA
| | - Bradley D Clymer
- Department of Electrical and Computer Engineering, The Ohio State University Columbus, OH, USA ; Biomedical Engineering, The Ohio State University Columbus, OH, USA
| | - George E Billman
- Department of Physiology and Cell Biology, The Ohio State University Columbus, OH, USA ; Davis Heart and Lung Research Institute, The Ohio State University Columbus, OH, USA
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Sharkey-Toppen T, Ding Y, Clymer BD, Simonetti OP, Raman SV. Improved pulse wave velocity wave front detection by template-matching. J Cardiovasc Magn Reson 2014. [PMCID: PMC4044909 DOI: 10.1186/1532-429x-16-s1-p361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Mazumder R, Clymer BD, White RD, Kolipaka A. Estimation of helical angle of the left ventricle using diffusion tensor imaging with minimum acquisition time. J Cardiovasc Magn Reson 2014. [PMCID: PMC4044888 DOI: 10.1186/1532-429x-16-s1-p359] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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Manivannan N, Clymer BD, Bratasz A, Powell KA. Comparison of super resolution reconstruction acquisition geometries for use in mouse phenotyping. Int J Biomed Imaging 2013; 2013:820874. [PMID: 24174930 PMCID: PMC3794539 DOI: 10.1155/2013/820874] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2013] [Revised: 08/14/2013] [Accepted: 08/19/2013] [Indexed: 12/01/2022] Open
Abstract
3D isotropic imaging at high spatial resolution (30-100 microns) is important for comparing mouse phenotypes. 3D imaging at high spatial resolutions is limited by long acquisition times and is not possible in many in vivo settings. Super resolution reconstruction (SRR) is a postprocessing technique that has been proposed to improve spatial resolution in the slice-select direction using multiple 2D multislice acquisitions. Any 2D multislice acquisition can be used for SRR. In this study, the effects of using three different low-resolution acquisition geometries (orthogonal, rotational, and shifted) on SRR images were evaluated and compared to a known standard. Iterative back projection was used for the reconstruction of all three acquisition geometries. The results of the study indicate that super resolution reconstructed images based on orthogonally acquired low-resolution images resulted in reconstructed images with higher SNR and CNR in less acquisition time than those based on rotational and shifted acquisition geometries. However, interpolation artifacts were observed in SRR images based on orthogonal acquisition geometry, particularly when the slice thickness was greater than six times the inplane voxel size. Reconstructions based on rotational geometry appeared smoother than those based on orthogonal geometry, but they required two times longer to acquire than the orthogonal LR images.
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Affiliation(s)
- Niranchana Manivannan
- Department of Electrical and Computer Engineering, The Ohio State University, Columbus, OH 43210, USA
| | - Bradley D. Clymer
- Department of Electrical and Computer Engineering, The Ohio State University, Columbus, OH 43210, USA
| | - Anna Bratasz
- Small Animal Imaging Shared Resources, The Ohio State University, Columbus, OH 43210, USA
| | - Kimerly A. Powell
- Small Animal Imaging Shared Resources, The Ohio State University, Columbus, OH 43210, USA
- Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA
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Erdal BS, Crouser ED, Yildiz V, King MA, Patterson AT, Knopp MV, Clymer BD. Quantitative computerized two-point correlation analysis of lung CT scans correlates with pulmonary function in pulmonary sarcoidosis. Chest 2013; 142:1589-1597. [PMID: 22628487 DOI: 10.1378/chest.11-2027] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
Abstract
BACKGROUND Chest CT scans are commonly used to clinically assess disease severity in patients presenting with pulmonary sarcoidosis. Despite their ability to reliably detect subtle changes in lung disease, the utility of chest CT scans for guiding therapy is limited by the fact that image interpretation by radiologists is qualitative and highly variable. We sought to create a computerized CT image analysis tool that would provide quantitative and clinically relevant information. METHODS We established that a two-point correlation analysis approach reduced the background signal attendant to normal lung structures, such as blood vessels, airways, and lymphatics while highlighting diseased tissue. This approach was applied to multiple lung fields to generate an overall lung texture score (LTS) representing the quantity of diseased lung parenchyma. Using deidentified lung CT scan and pulmonary function test (PFT) data from The Ohio State University Medical Center's Information Warehouse, we analyzed 71 consecutive CT scans from patients with sarcoidosis for whom simultaneous matching PFTs were available to determine whether the LTS correlated with standard PFT results. RESULTS We found a high correlation between LTS and FVC, total lung capacity, and diffusing capacity of the lung for carbon monoxide (P < .0001 for all comparisons). Moreover, LTS was equivalent to PFTs for the detection of active lung disease. The image analysis protocol was conducted quickly (< 1 min per study) on a standard laptop computer connected to a publicly available National Institutes of Health ImageJ toolkit. CONCLUSIONS The two-point image analysis tool is highly practical and appears to reliably assess lung disease severity. We predict that this tool will be useful for clinical and research applications.
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Affiliation(s)
- Barbaros Selnur Erdal
- Department of Electrical and Computer Engineering, The Ohio State University College of Engineering, Columbus, OH; Department of Radiology, The Ohio State University College of Medicine, Columbus, OH
| | - Elliott D Crouser
- Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, The Ohio State University College of Medicine, Columbus, OH.
| | - Vedat Yildiz
- Center for Biostatistics, The Ohio State University Office of Health Sciences, Columbus, OH
| | - Mark A King
- Department of Radiology, The Ohio State University College of Medicine, Columbus, OH
| | - Andrew T Patterson
- Department of Radiology, The Ohio State University College of Medicine, Columbus, OH
| | - Michael V Knopp
- Department of Radiology, The Ohio State University College of Medicine, Columbus, OH
| | - Bradley D Clymer
- Department of Electrical and Computer Engineering, The Ohio State University College of Engineering, Columbus, OH
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Mazumder R, Choi S, Raterman B, Clymer BD, Kolipaka A, White RD. Diffusion tensor imaging of formalin fixed infarcted porcine hearts. J Cardiovasc Magn Reson 2013. [PMCID: PMC3559266 DOI: 10.1186/1532-429x-15-s1-e103] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
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Mazumder R, Choi S, Raterman B, Clymer BD, Kolipaka A, White RD. Diffusion tensor imaging of formalin fixed infarcted porcine hearts: a comparison between 3T and 1.5T. J Cardiovasc Magn Reson 2013. [PMCID: PMC3560070 DOI: 10.1186/1532-429x-15-s1-w34] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
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Sharkey-Toppen TP, Mihai G, Maiseyeu A, Tran T, Clymer BD, Simonetti OP, Raman SV. Improved in vivo human carotid artery wall T₂ estimation. Magn Reson Imaging 2012; 31:44-52. [PMID: 22921942 DOI: 10.1016/j.mri.2012.06.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2011] [Revised: 05/20/2012] [Accepted: 06/16/2012] [Indexed: 10/28/2022]
Abstract
T(2) quantification has been shown to noninvasively and accurately estimate tissue iron content in the liver and heart; applying this to thin-walled carotid arteries introduces a new challenge to the estimation process. With most imaging voxels in a vessel being along its boundaries, errors in parameter estimation may result from partial volume mixing and misregistration due to motion in addition to noise and other common error sources. To minimize these errors, we propose a novel technique to reliably estimate T(2) in thin regions of vessel wall. The technique weights data points to reduce the influence of expected error sources. It uses neighborhoods of data to increase the number of points for fitting and to assess lack of fit for automated outlier detection and deletion. The performance of this method was observed in simulations, phantom and in vivo patient studies and compared to results obtained using a pixelwise linear least squares estimation of T(2). The new proposed method showed a closer match to the expected results, and a 4.2-fold decrease in interobserver variability for in vivo studies. This increased confidence in estimation should improve the ability to reliably quantify iron noninvasively in the arterial wall.
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Erdal BS, Clymer BD, Yildiz VO, Julian MW, Crouser ED. Unexpectedly high prevalence of sarcoidosis in a representative U.S. Metropolitan population. Respir Med 2012; 106:893-9. [PMID: 22417737 DOI: 10.1016/j.rmed.2012.02.007] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/04/2011] [Revised: 02/07/2012] [Accepted: 02/14/2012] [Indexed: 10/28/2022]
Abstract
The prevalence of sarcoidosis in the United States is unknown, with estimates ranging widely from 1 to 40 per 100,000. We sought to determine the prevalence of sarcoidosis in our health system compared to other rare lung diseases and to further establish if the prevalence was changing over time. We interrogated the electronic medical records of all patients treated in our health system from 1995 to 2010 (1.48 million patients) using the common ICD9 codes for sarcoidosis (135), lung cancer (162), and several other lung diseases characterized, like sarcoidosis, as "rare lung diseases". The patient demographic information (race, gender, age) was further analyzed to identify signature data patterns. The prevalence of sarcoidosis in our health system increased steadily from 164/100,000 in 1995 to 330/100,000 in 2010, and this trend could not be ascribed simply to changes in patient demographics or patient referral patterns. We further estimate that the prevalence of sarcoidosis exceeds 48 per 100,000 in Franklin County, Ohio, the demographic profile of which is nearly identical to that of the U.S. Sarcoidosis prevalence increased over time relative to lung cancer, a benchmark disease with stable disease prevalence, and exceeded that of other rare lung diseases. We postulate that the observed 2-fold increase in sarcoidosis disease prevalence in our health system is primarily related to improved detection and diagnostic approaches, and we conclude that the actual prevalence of sarcoidosis in central Ohio greatly exceeds current U.S. estimates.
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Affiliation(s)
- Barbaros S Erdal
- Department of Radiology, The Ohio State University College of Medicine, Columbus, OH, USA
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Erdal BS, Liu J, Ding J, Chen J, Marsh CB, Kamal J, Clymer BD. A database de-identification framework to enable direct queries on medical data for secondary use. Methods Inf Med 2012; 51:229-41. [PMID: 22311158 DOI: 10.3414/me11-01-0048] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2011] [Accepted: 11/08/2011] [Indexed: 11/09/2022]
Abstract
OBJECTIVE To qualify the use of patient clinical records as non-human-subject for research purpose, electronic medical record data must be de-identified so there is minimum risk to protected health information exposure. This study demonstrated a robust framework for structured data de-identification that can be applied to any relational data source that needs to be de-identified. METHODS Using a real world clinical data warehouse, a pilot implementation of limited subject areas were used to demonstrate and evaluate this new de-identification process. Query results and performances are compared between source and target system to validate data accuracy and usability. RESULTS The combination of hashing, pseudonyms, and session dependent randomizer provides a rigorous de-identification framework to guard against 1) source identifier exposure; 2) internal data analyst manually linking to source identifiers; and 3) identifier cross-link among different researchers or multiple query sessions by the same researcher. In addition, a query rejection option is provided to refuse queries resulting in less than preset numbers of subjects and total records to prevent users from accidental subject identification due to low volume of data. This framework does not prevent subject re-identification based on prior knowledge and sequence of events. Also, it does not deal with medical free text de-identification, although text de-identification using natural language processing can be included due its modular design. CONCLUSION We demonstrated a framework resulting in HIPAA Compliant databases that can be directly queried by researchers. This technique can be augmented to facilitate inter-institutional research data sharing through existing middleware such as caGrid.
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Affiliation(s)
- B S Erdal
- Information Warehouse, The Ohio State University Medical Center, Columbus, Ohio, USA
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17
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Kale MC, Clymer BD, Koch RM, Heverhagen JT, Sammet S, Stevens R, Knopp MV. Multispectral co-occurrence with three random variables in dynamic contrast enhanced magnetic resonance imaging of breast cancer. IEEE Trans Med Imaging 2008; 27:1425-1431. [PMID: 18815094 DOI: 10.1109/tmi.2008.922181] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Presented is a new computer-aided multispectral image processing method which is used in three spatial dimensions and one spectral dimension where the dynamic, contrast enhanced magnetic resonance parameter maps derived from voxel-wise model-fitting represent the spectral dimension. The method is based on co-occurrence analysis using a 3-D window of observation which introduces an automated identification of suspicious lesions. The co-occurrence analysis defines 21 different statistical features, a subset of which were input to a neural network classifier where the assessments of the voxel-wise majority of a group of radiologist readings were used as the gold standard. The voxel-wise true positive fraction (TPF) and false positive fraction (FPF) results of the computer classifier were statistically indistinguishable from the TPF and FPF results of the readers using a one sample paired t-test. In order to observe the generality of the method, two different groups of studies were used with widely different image acquisition specifications.
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Affiliation(s)
- Mehmet C Kale
- Department of Electrical and Computer Engineering, The Ohio State University, Columbus, OH 43210, USA
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18
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Del Rio CL, Dawson TA, Clymer BD, Paterson DJ, Billman GE. Effects of acute vagal nerve stimulation on the early passive electrical changes induced by myocardial ischaemia in dogs: heart rate-mediated attenuation. Exp Physiol 2008; 93:931-44. [PMID: 18376003 DOI: 10.1113/expphysiol.2007.041558] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Parasympathetic activity during acute coronary artery occlusion (CAO) can protect against ischaemia-induced malignant arrhythmias; nonetheless, the mechanism mediating this protection remains unclear. During CAO, myocardial electrotonic uncoupling is associated with autonomically mediated immediate (i.e. type 1A) arrhythmias and can modulate pro-arrhythmic dispersion of repolarization. Therefore, the effects of acutely enhanced or decreased cardiac parasympathetic activity on early electrotonic coupling during CAO, as measured by myocardial electrical impedance (MEI), were investigated. Anaesthetized dogs were instrumented for MEI measurements, and left circumflex coronary arterial occlusions were performed in intact (CTRL) and vagotomized (VAG) animals. The CAO was followed by either vagotomy (CTRL) or vagal nerve stimulation (VNS, 10 Hz, 10 V) in the VAG dogs. Vagal nerve stimulation was studied in two additional sets of animals. In one set heart rate (HR) was maintained by pacing (220 beats min(-1)), while in the other set bilateral stellectomy preceded CAO. The MEI increased after CAO in all animals. A larger MEI increase was observed in vagotomized animals (+85 +/- 9 Omega, from 611 +/- 24 Omega, n = 16) when compared with intact control dogs (+43 +/- 5 Omega, from 620 +/- 20 Omega, n = 7). Acute vagotomy during ischaemia abruptly increased HR (from 155 +/- 11 to 193 +/- 15 beats min(-1)) and MEI (+12 +/- 1.1 Omega, from 663 +/- 18 Omega). In contrast, VNS during ischaemia (n = 11) abruptly reduced HR (from 206 +/- 6 to 73 +/- 9 beats min(-1)) and MEI (-16 +/- 2 Omega, from 700 +/- 44 Omega). These effects of VNS were eliminated by pacing but not by bilateral stellectomy. Vagal nerve stimulation during CAO also attenuated ECG-derived indices of ischaemia (e.g. ST segment, 0.22 +/- 0.03 versus 0.15 +/- 0.03 mV) and of rate-corrected repolarization dispersion [terminal portion of T wave (TPEc), 84.5 +/- 4.2 versus 65.8 +/- 5.9 ms; QTc, 340 +/- 8 versus 254 +/- 16 ms]. Vagal nerve stimulation during myocardial ischaemia exerts negative chronotropic effects, limiting early ischaemic electrotonic uncoupling and dispersion of repolarization, possibly via a decreased myocardial metabolic demand.
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Affiliation(s)
- Carlos L Del Rio
- Department of Physiology and Cell Biology, The Ohio State University, 1645 Neil Avenue, 305 Hamilton Hall, Columbus, OH 43210, USA
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19
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Del Rio CL, McConnell PI, Kukielka M, Dzwonczyk R, Clymer BD, Howie MB, Billman GE. Electrotonic remodeling following myocardial infarction in dogs susceptible and resistant to sudden cardiac death. J Appl Physiol (1985) 2007; 104:386-93. [PMID: 18048585 DOI: 10.1152/japplphysiol.01106.2007] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Passive electrical remodeling following myocardial infarction (MI) is well established. These changes can alter electrotonic loading and trigger the remodeling of repolarization currents, a potential mechanism for ventricular fibrillation (VF). However, little is known about the role of passive electrical markers as tools to identify VF susceptibility post-MI. This study investigated electrotonic remodeling in the post-MI ventricle, as measured by myocardial electrical impedance (MEI), in animals prone to and resistant to VF. MI was induced in dogs by a two-stage left anterior descending (LAD) coronary artery ligation. Before infarction, MEI electrodes were placed in remote (left circumflex, LCX) and infarcted (LAD) myocardium. MEI was measured in awake animals 1, 2, 7, and 21 days post-MI. Subsequently, VF susceptibility was tested by a 2-min LCX occlusion during exercise; 12 animals developed VF (susceptible, S) and 12 did not (resistant, R). The healing infarct had lower MEI than the normal myocardium. This difference was stable by day 2 post-MI (287 +/- 32 Omega vs. 425 +/- 62 Omega, P < 0.05). Significant differences were observed between resistant and susceptible animals 7 days post-MI; susceptible dogs had a wider electrotonic gradient between remote and infarcted myocardium (R: 89 +/- 60 Omega vs. S: 180 +/- 37 Omega). This difference increased over time in susceptible animals (252 +/- 53 Omega at 21 days) due to post-MI impedance changes on the remote myocardium. These data suggest that early electrotonic changes post-MI could be used to assess later arrhythmia susceptibility. In addition, passive-electrical changes could be a mechanism driving active-electrical remodeling post-MI, thereby facilitating the induction of arrhythmias.
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Affiliation(s)
- Carlos L Del Rio
- Dept. of Physiology and Cell Biology, The Ohio State Univ., 1645 Neil Ave., 305 Hamilton Hall, Columbus, OH 43210, USA
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20
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Woods BJ, Clymer BD, Kurc T, Heverhagen JT, Stevens R, Orsdemir A, Bulan O, Knopp MV. Malignant-lesion segmentation using 4D co-occurrence texture analysis applied to dynamic contrast-enhanced magnetic resonance breast image data. J Magn Reson Imaging 2007; 25:495-501. [PMID: 17279534 DOI: 10.1002/jmri.20837] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
PURPOSE To investigate the use of four-dimensional (4D) co-occurrence-based texture analysis to distinguish between nonmalignant and malignant tissues in dynamic contrast-enhanced (DCE) MR images. MATERIALS AND METHODS 4D texture analysis was performed on DCE-MRI data sets of breast lesions. A model-free neural network-based classification system assigned each voxel a "nonmalignant" or "malignant" label based on the textural features. The classification results were compared via receiver operating characteristic (ROC) curve analysis with the manual lesion segmentation produced by two radiologists (observers 1 and 2). RESULTS The mean sensitivity and specificity of the classifier agreed with the mean observer 2 performance when compared with segmentations by observer 1 for a 95% confidence interval, using a two-sided t-test with alpha = 0.05. The results show that an area under the ROC curve (A(z)) of 0.99948, 0.99867, and 0.99957 can be achieved by comparing the classifier vs. observer 1, classifier vs. union of both observers, and classifier vs. intersection of both observers, respectively. CONCLUSION This study shows that a neural network classifier based on 4D texture analysis inputs can achieve a performance comparable to that achieved by human observers, and that further research in this area is warranted.
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Affiliation(s)
- Brent J Woods
- Department of Electrical and Computer Engineering, Ohio State University, Columbus, Ohio 43210, USA
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21
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Del Rio CL, McConnell PI, Clymer BD, Dzwonczyk R, Billman GE, Michler RE, Howie MB. P3-18. Heart Rhythm 2006. [DOI: 10.1016/j.hrthm.2006.02.550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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22
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del Rio CL, Kukielka M, Dzwonczyk R, Clymer BD, Howie MB, Billman GE. Myocardial Electrical Impedance Response to Submaximal Exercise in Dogs with Healed Infarcts. FASEB J 2006. [DOI: 10.1096/fasebj.20.4.a322-c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Carlos Luis del Rio
- AnesthesiologyThe Ohio State University410 W 10th AVE, Doan Hall N416ColumbusOH43210
- Electrical & Computer Eng.The Ohio State University2015 Neil AVE, 205 Dreese LabsColumbusOH43210
| | - Monica Kukielka
- Physiology & Cell BiologyThe Ohio State University1645 Neil AVE, Hamilton Hall 304ColumbusOH43210
| | - Roger Dzwonczyk
- AnesthesiologyThe Ohio State University410 W 10th AVE, Doan Hall N416ColumbusOH43210
| | - Bradley D Clymer
- Electrical & Computer Eng.The Ohio State University2015 Neil AVE, 205 Dreese LabsColumbusOH43210
| | - Michael B Howie
- AnesthesiologyThe Ohio State University410 W 10th AVE, Doan Hall N416ColumbusOH43210
| | - George E. Billman
- Physiology & Cell BiologyThe Ohio State University1645 Neil AVE, Hamilton Hall 304ColumbusOH43210
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23
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Showalter C, Clymer BD, Richmond B, Powell K. Three-dimensional texture analysis of cancellous bone cores evaluated at clinical CT resolutions. Osteoporos Int 2006; 17:259-66. [PMID: 16170445 DOI: 10.1007/s00198-005-1994-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/29/2004] [Accepted: 07/06/2005] [Indexed: 10/25/2022]
Abstract
The objective of this study was to determine if three-dimensional (3D) Haralick co-occurrence texture measures calculated from low-resolution CT images of trabecular bone correlate with 3D structural indices measured from high-resolution CT images. Thirty-three cubical regions of trabecular bone from human calcanei were analyzed using images obtained from a micro-computed tomography (micro-CT) scanner. 3D measures of bone architecture were calculated. The original images were then subsampled by factors of 5, 10, 15, and 20, and 3D texture features were calculated for each set of subsampled images. Linear regression models showed that co-occurrence texture features were significantly correlated with structural indices. Over 90% of the variation in three different structural indices was explained in two-variable regression models using texture features as predictors when the voxel side length was reduced by a factor of 10. Texture features calculated from clinical images may increase our ability to obtain trabecular bone architectural information when high-resolution images are unobtainable.
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Affiliation(s)
- Chad Showalter
- Department of Electrical & Computer Engineering, The Ohio State University, Columbus, OH 43210, USA
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24
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del Rio CL, McConnell PI, Clymer BD, Dzwonczyk R, Michler RE, Billman GE, Howie MB. Early time course of myocardial electrical impedance during acute coronary artery occlusion in pigs, dogs, and humans. J Appl Physiol (1985) 2005; 99:1576-81. [PMID: 15961608 DOI: 10.1152/japplphysiol.00830.2004] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Changes in myocardial electrical impedance (MEI) and physiological end points have been correlated during acute ischemia. However, the importance of MEI's early time course is not clear. This study evaluates such significance, by comparing the temporal behavior of MEI during acute total occlusion of the left anterior descending coronary artery in anesthetized humans, dogs, and pigs. Here, interspecies differences in three MEI parameters (baseline, time to plateau onset, and plateau value normalized by baseline) were evaluated using Kruskal-Wallis ANOVA and post hoc tests ( P < 0.05). Noteworthy differences in the MEI time to plateau onset were observed: In dogs, MEI ischemic plateau was reached after 46.3 min (SD 12.9) min of occlusion, a significantly longer period compared with that of pigs and humans [4.7 (SD 1.2) and 4.1 min (SD 1.9), respectively]. However, no differences could be observed between both animal species regarding the normalized MEI ischemic plateau value (15.3% (SD 4.7) in pigs, vs. 19.6% (SD 2.6) in dogs). For all studied MEI parameters, only swine values resembled those of humans. The severity of myocardial supply ischemia, resulting from coronary artery occlusion, is known to be dependent on collateral flow. Thus, because dogs possess a well-developed collateral system (unlike humans or pigs), they have shown superior resistance to occlusion of a coronary artery. Here, the early MEI time course after left anterior descending coronary artery occlusion, represented by the time required to reach ischemic plateau, was proven to reflect such interspecies differences.
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Affiliation(s)
- Carlos L del Rio
- Department of Anesthesiology, The Ohio State University, Columbus, 43210, USA.
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25
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Truong TK, Clymer BD, Chakeres DW, Schmalbrock P. Three-dimensional numerical simulations of susceptibility-induced magnetic field inhomogeneities in the human head. Magn Reson Imaging 2002; 20:759-70. [PMID: 12591571 DOI: 10.1016/s0730-725x(02)00601-x] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Three-dimensional numerical simulations of the static magnetic field in the human head were carried out to assess the field inhomogeneity due to magnetic susceptibility differences at tissue interfaces. We used a finite difference method and magnetic permeability distributions obtained by segmentation of computed tomography images. Computations were carried out for four models, consisting of the head and the neck; the head, neck, and shoulders; the head, neck, and thorax; and the head tilted backwards, including the neck and the shoulders. Considerable magnetic field inhomogeneities were observed in the inferior frontal lobes and inferior temporal lobes, particularly near the sphenoid sinus and the temporal bones. Air/tissue interfaces at the shoulders were found to induce substantial magnetic field inhomogeneities in the occipital lobes and the cerebellum, whereas air/tissue interfaces in the lungs appeared to have less influence on the magnetic field in the brain. Tilting the head backwards could significantly reduce the field inhomogeneities superior to the planum sphenoidale as well as in the occipital lobes and the cerebellum.
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Affiliation(s)
- Trong-Kha Truong
- Department of Radiology, The Ohio State University, Columbus, Ohio 43210, USA
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26
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James D, Clymer BD, Schmalbrock P. Texture detection of simulated microcalcification susceptibility effects in magnetic resonance imaging of breasts. J Magn Reson Imaging 2001; 13:876-81. [PMID: 11382947 DOI: 10.1002/jmri.1125] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The presence, size, structure and clustering characteristics of microcalcifications can indicate breast cancer. The magnetic susceptibility of microcalcifications differs from soft biological tissues, leading to directional blurring effects that can be detected by statistical image processing methods. A study of the ability of statistical texture analysis to detect simulated localized blurring in magnetic resonance imaging (MRI) of dense breast is presented. This method can detect localized blurring with sensitivity of 88.89% to 94.44%, specificity of 99.72% to 100%, positive predictive value of 73.91% to 100% and negative predictive value of 99.91% to 99.95%. J. Magn. Reson. Imaging 2001;13:876-881.
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Affiliation(s)
- D James
- Department of Electrical Engineering, The Ohio State University, 2015 Nell Avenue, Columbus, OH 43210, USA
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27
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Bartolo A, Clymer BD, Burgess RC, Turnbull JP, Golish JA, Perry MC. An arrhythmia detector and heart rate estimator for overnight polysomnography studies. IEEE Trans Biomed Eng 2001; 48:513-21. [PMID: 11341525 DOI: 10.1109/10.918590] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
We present an algorithm for automatic on-line analysis of the electrocardiography (ECG) channel acquired during overnight polysomnography (PSG) studies. The system is independent of ECG morphology, requires no manual initialization, and operates automatically throughout the night. It highlights likely occurrences of arrhythmias and intervals of bad signal quality while outputting a continual estimate of heart rate. Algorithm performance is validated against standard ECG databases and PSG data. Results demonstrate a minimal false negative rate and a low false positive rate for arrhythmia detection, and robustness over a wide range of noise contamination.
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Affiliation(s)
- A Bartolo
- Biomedical Engineering Center, Ohio State University, Columbus 43210, USA.
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28
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Bartolo A, Clymer BD, Golish JA, Burgess RC. The polysomnogram assay: a method to represent the overnight polysomnogram in a condensed format. Comput Biomed Res 2000; 33:110-25. [PMID: 10854119 DOI: 10.1006/cbmr.1999.1537] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
We present the polysomnogram assay (PSGA), a new representation format for the polysomnogram (PSG), designed to assist in the interpretation of overnight PSG studies. The technique condenses the PSG record by a factor of 30 while preserving the ability to portray PSG features of diagnostic relevance, including sleep architecture, arousals, movement, leg jerks, cyclic alternating pattern, and increased breathing effort. The PSGA patterns associated with these events are described and illustrated by examples. The new format considerably reduces the effort required to evaluate sleep quality and continuity, making it more practicable for the polysomnographer to interpret the entire overnight PSG study. The compressed time scale also facilitates analysis of relatively long PSG episodes and allows assessment of signal activity surrounding critical PSG events. The PSGA appears capable of improving identification of arousals, leg jerks, and upper airway resistance, and may be especially amenable for automatic analysis of PSG data.
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Affiliation(s)
- A Bartolo
- Biomedical Engineering Center, Ohio State University, Columbus 43210, USA.
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29
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Abstract
We present a study of least mean square (LMS) based adaptive filters for high resolution magnetic resonance (MR) images to improve signal-to-noise ratio (SNR) while maintaining sharp edges. Five variations of a new technique that senses the type of noise or the presence of an edge in the filtering window, called adaptive filtering with noise estimation (AFEN) are presented and compared with the basic two-dimensional LMS (TDLMS) algorithm, adaptive filtering with a mean estimator (AFLME), a two-dimensional averaged LMS (TDALMS) algorithm, and a two-dimensional median weighted LMS (TDMLMS) algorithm. Although TDLMS, TDALMS, and TDMLMS filters give better SNR improvement when applied uniformly to an image, they significantly blur edges. The AFLME and AFEN filters both show approximately a factor of 2 SNR improvement with much better retention of edges, with AFEN showing slightly better performance for both SNR and edge sharpness in phantom and in vivo inner ear images.
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Affiliation(s)
- K Ying
- Department of Radiology, Ohio State University, Columbus, OH 43210, USA
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30
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Butzer DC, Clymer BD, Anderson BL. Highly efficient interconnection for use with a multistage optical switching network with orthogonally polarized data and address information. Appl Opt 1995; 34:1788-1800. [PMID: 21037724 DOI: 10.1364/ao.34.001788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
A novel optical interconnection is introduced for a multistage optical switching network that uses orthogonally polarized data and address information. The network is unique in that the data information is never regenerated and remains in optical form throughout (i.e., it is never converted into electrical information). This has two main consequences: (1) the bandwidth of the data is not restricted by electrical circuit considerations, and (2) the optical interconnections from one stage of the network to the next must be highly efficient. The interconnection meets several goals: high efficiency, preservation of cross polarization of data and address, low cross talk between polarizations, good manufacturability, resistance to misalignment caused by thermal expansion, and absence of significant aberrations. In addition, sychronization of the signals is maintained, as the optical path lengths for all routes through the system are equal.
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31
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Schmalbrock P, Brogan MA, Chakeres DW, Hacker VA, Ying K, Clymer BD. Optimization of submillimeter-resolution MR imaging methods for the inner ear. J Magn Reson Imaging 1993; 3:451-9. [PMID: 8324303 DOI: 10.1002/jmri.1880030304] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Submillimeter-resolution magnetic resonance (MR) imaging of the inner ear is valuable for diagnosis and treatment planning. Its main advantage for investigations of underlying disease is that it can directly depict the fluid spaces of the membranous labyrinth rather than define only the bony canal, as does computed tomography. A systematic evaluation of factors influencing high-resolution three-dimensional (3D) gradient-echo imaging of the inner ear with a standard clinical MR system is presented. This includes the evaluation of various radio-frequency coils, the design of steady-state pulse sequences, and the optimization of acquisition parameters. A quantitative analysis was facilitated by computer simulations and image processing. The highest signal-to-noise ratio for the membranous labyrinth was obtained with a single 3-inch (7.6-cm) receiver coil and a 3D GRASS (gradient-recalled acquisition in the steady state) sequence with the minimal achievable TR msec/TE msec of 25/7 and a 40 degrees--60 degrees flip angle, which yielded acceptable images with minimal voxel volumes of 0.1 mm3 in 14 minutes.
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Affiliation(s)
- P Schmalbrock
- Department of Radiology, Ohio State University, Columbus 43210
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32
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Anderson BL, De Vore TB, Clymer BD. Use of laser-diode arrays in holographic interconnections. Appl Opt 1992; 31:7411-7416. [PMID: 20802616 DOI: 10.1364/ao.31.007411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Holographic interconnection schemes for high-speed data transfer have been demonstrated by other researchers. Because holographic recording materials presently available are sensitive to the visible spectrum but not to the near infrared, these studies used bulky gas lasers. Visible laser diodes, as they become available, will likely become a preferred source in a practical system because of their small size and high beam powers. The two mutually coherent beams needed to write the hologram have previously been implemented by using bulk optics to split a beam. In anticipation of the use of coherently coupled visible laser diode arrays as sources, it is shown that the individual elements of laser diode arrays currently available have sufficient mutual coherence to create reasonable holographic elements. This application is demonstrated with an infrared array because of the unavailability of visible arrays in this emerging technology. It is extrapolated that for visible coherently coupled laser diode arrays and current holographic materials, a holographic interconnection system is potentially feasible by using the mutually coherent beams from individual facets. This makes recording holograms more straightforward because the recording process eliminates beam splitting requirements. Therefore the system is more desirable for in situ recording situations such as those required for dynamic interconnection.
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33
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Jenkins RB, Clymer BD. Acousto-optic comparison switch for optical switching networks with analog addressing techniques. Appl Opt 1992; 31:5453-5463. [PMID: 20733730 DOI: 10.1364/ao.31.005453] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Sorting networks based on perfect-shuffle or Banyan interconnection techniques are useful in parallel processing and telecommunications applications. An acousto-optic comparison switch that is useful in such networks is implemented, which ensures high-bandwidth optical data transmission by multiplexing the data and the address on orthogonal polarizations of light. Addresses are encoded either as the frequencies of amplitude modulation of the optical carrier or as discrete optical power levels, and are compared by using simple analog techniques. An analysis of both address techniques with respect to speed and noise is crucial to estimating the switch performance.
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34
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Clymer BD, Devore TB, Jagadeesh J, Tomei LD. Spatial resolution of images reconstructed from a bulk-detection scanning-laser microscope. Appl Opt 1991; 30:5056-5062. [PMID: 20717320 DOI: 10.1364/ao.30.005056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
We present theory and experimental data on the minimum detectable feature size and spatial resolution for a scanning-laser microscope system that uses bulk photodetection. In the analysis, interactions of laser photons with an object are given a probability function that varies with the position within an object. Typical interactions that can be measured with such a scanning device include photon absorption (densitometry), scattering, and photofluorescence. Because bulk photodetection is used, image resolution is a function of laser-probe spot size and recording precision. We present data from simulations that predict a minimum separation between feature centers of approximately 1.56 times the half-width of the laser spot. Experimental verification by scans of U.S. Air Force test targets confirms this theory.
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Clymer BD, Gillfillan D. Corrugation gratings for fast integrated complementary metal-oxide semiconductor photodetectors: implementation and diffraction analyses. Appl Opt 1991; 30:4390-4395. [PMID: 20717215 DOI: 10.1364/ao.30.004390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
We present simulation experiments to show the feasibility of using a corrugation grating structure at the silicon-silicon dioxide interface to reduce photon-absorption depth and therefore to improve response times for shallow p-n junction photodiodes for use in the optical interconnection of very-large-scale-integrated circuits. A fabrication method that uses standard complementary metal-oxide semiconductor fabrication steps is presented for generating the grating structure. Simulations show reduction in 1/e photon-penetration depth to one half the value that is expected with no grating.
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Clymer BD. Surface-relief grating structures for efficient high bandwidth integrated photodetectors for optical interconnections in silicon VLSI. Appl Opt 1989; 28:5374-5382. [PMID: 20556056 DOI: 10.1364/ao.28.005374] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Although many researchers have proposed optical solutions to interconnection and communication problems at the chip, board, and backplane levels, the integration of fast photodetectors within a silicon chip package has yet to be accomplished. The development of such devices is crucial to the feasibility of optical interconnection at hierarchical levels below backplane connection. In our photodetector design, the much faster drift photocurrent response for reverse-biased shallow p-n junctions is emphasized over the slower diffusion response by confining a higher percentage of photon absorption to the depletion region of the junction than expected for normal light propagation in the silicon substrate. A surface-relief grating structure diffracts light at the Si-SiO(2) interface to cause propagation at large angles from the surface normal. Since the absorption length for photons in the silicon is measured along the ray path, the average depth beneath the surface at which photons are absorbed to generate carriers for photocurrent is reduced, generating a higher percentage of carriers in the depletion region of the junction where drift effects dominate diffusion effects in carrier transport. The resulting drift photocurrent can be orders of magnitude faster in response than the usual diffusion photocurrent which results if light propagates normal to the silicon surface and absorption of a large number of photons occurs far away from the effects of the electric field present at the diode junction. We report simulation studies that indicate etched gratings of the order of 0.2 microm deep in the silicon surface can diffract an appreciable amount of light away from normal propagation in the silicon.
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