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Poline JB, Das S, Glatard T, Madjar C, Dickie EW, Lecours X, Beaudry T, Beck N, Behan B, Brown ST, Bujold D, Beauvais M, Caron B, Czech C, Dharsee M, Dugré M, Evans K, Gee T, Ippoliti G, Kiar G, Knoppers BM, Kuehn T, Le D, Lo D, Mazaheri M, MacFarlane D, Muja N, O'Brien EA, O'Callaghan L, Paiva S, Park P, Quesnel D, Rabelais H, Rioux P, Legault M, Tremblay-Mercier J, Rotenberg D, Stone J, Strauss T, Zaytseva K, Zhou J, Duchesne S, Khan AR, Hill S, Evans AC. Data and Tools Integration in the Canadian Open Neuroscience Platform. Sci Data 2023; 10:189. [PMID: 37024500 PMCID: PMC10079825 DOI: 10.1038/s41597-023-01946-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 01/10/2023] [Indexed: 04/08/2023] Open
Abstract
We present the Canadian Open Neuroscience Platform (CONP) portal to answer the research community's need for flexible data sharing resources and provide advanced tools for search and processing infrastructure capacity. This portal differs from previous data sharing projects as it integrates datasets originating from a number of already existing platforms or databases through DataLad, a file level data integrity and access layer. The portal is also an entry point for searching and accessing a large number of standardized and containerized software and links to a computing infrastructure. It leverages community standards to help document and facilitate reuse of both datasets and tools, and already shows a growing community adoption giving access to more than 60 neuroscience datasets and over 70 tools. The CONP portal demonstrates the feasibility and offers a model of a distributed data and tool management system across 17 institutions throughout Canada.
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Affiliation(s)
- Jean-Baptiste Poline
- McGill University, Montreal Neurological Institute and Hospital, McConnell Brain Imaging Centre, Neuro Data Science ORIGAMI lab, Montreal, Quebec, Canada.
- McGill University, Healthy Brains Healthy Lives, Neurohub, Montreal, Quebec, Canada.
- McGill University, McConnell Brain Imaging Centre, Montreal, Quebec, Canada.
| | - Samir Das
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Tristan Glatard
- Computer Science, Concordia University, Montreal, Quebec, Canada
| | - Cécile Madjar
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Erin W Dickie
- Krembil Centre for Neuroinformatics, Toronto, Ontario, Canada
| | - Xavier Lecours
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Thomas Beaudry
- Computer Science, Concordia University, Montreal, Quebec, Canada
| | - Natacha Beck
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | | | - Shawn T Brown
- Hewlett Packard Entreprise, Pittsburgh, Pennsylvania, US
| | - David Bujold
- McGill University, Canadian Centre for Computational Genomics, Montreal, Quebec, Canada
| | | | - Bryan Caron
- McGill University, Healthy Brains Healthy Lives, Neurohub, Montreal, Quebec, Canada
| | - Candice Czech
- McGill University, Healthy Brains Healthy Lives, Neurohub, Montreal, Quebec, Canada
| | | | - Mathieu Dugré
- Computer Science, Concordia University, Montreal, Quebec, Canada
| | - Ken Evans
- Indoc Research, Toronto, Ontario, Canada
| | - Tom Gee
- Indoc Research, Toronto, Ontario, Canada
| | - Giulia Ippoliti
- McGill University, Montreal Neurological Institute and Hospital, McConnell Brain Imaging Centre, Neuro Data Science ORIGAMI lab, Montreal, Quebec, Canada
- McGill University, Department of Bioengineering, Montreal, Quebec, Canada
| | - Gregory Kiar
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | | | - Tristan Kuehn
- University of Western Ontario, Robarts Research Institute, Montreal, Quebec, Canada
| | - Diana Le
- McGill University, Healthy Brains Healthy Lives, Montreal, Quebec, Canada
| | - Derek Lo
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Mandana Mazaheri
- Computer Science, Concordia University, Montreal, Quebec, Canada
| | - Dave MacFarlane
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Naser Muja
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Emmet A O'Brien
- McGill University, Healthy Brains Healthy Lives, Neurohub, Montreal, Quebec, Canada
| | - Liam O'Callaghan
- McGill University, Healthy Brains Healthy Lives, Neurohub, Montreal, Quebec, Canada
| | - Santiago Paiva
- McGill University, Montreal Neurological Institute and Hospital, McConnell Brain Imaging Centre, Neuro Data Science ORIGAMI lab, Montreal, Quebec, Canada
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Patrick Park
- University of Western Ontario, Robarts Research Institute, Montreal, Quebec, Canada
| | - Darcy Quesnel
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Henri Rabelais
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Pierre Rioux
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Mélanie Legault
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Jennifer Tremblay-Mercier
- Douglas Mental Health University Institute - Research Centre, StoP-Alzheimer Centre, Montreal, Quebec, Canada
| | - David Rotenberg
- Krembil Centre for Neuroinformatics, Toronto, Ontario, Canada
| | - Jessica Stone
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
| | - Ted Strauss
- McGill University, McConnell Brain Imaging Centre, Montreal, Quebec, Canada
| | - Ksenia Zaytseva
- McGill University, Canadian Centre for Computational Genomics, Montreal, Quebec, Canada
| | - Joey Zhou
- Computer Science, Concordia University, Montreal, Quebec, Canada
| | - Simon Duchesne
- McGill University, McConnell Brain Imaging Centre, Montreal, Quebec, Canada
| | - Ali R Khan
- University of Western Ontario, Robarts Research Institute, Montreal, Quebec, Canada
| | - Sean Hill
- Krembil Centre for Neuroinformatics, Toronto, Ontario, Canada
| | - Alan C Evans
- McGill University, Ludmer Centre for Mental Health, Montreal Neurological Institute, McGill Centre for Integrative Neuroscience, Montreal, Quebec, Canada
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