1
|
Nyunt MH, Soe HO, Aye KT, Aung WW, Kyaw YY, Kyaw AK, Myat TW, Latt AZ, Win MM, Win AA, Htun YM, Zaw KM, Ei PW, Hein KT, San LL, Oo NAT, Lin H, Mon NCN, Yee KT, Htun KL, Aye LPP, Ko YK, Htoo THH, Aung KM, Azili H, Han SS, Zaw NN, Win SM, Thwe WM, Aye TT, Hlaing MS, Minn WY, Thu PP, Thu HM, Htun ZT. Surge of severe acute respiratory syndrome coronavirus 2 infections linked to single introduction of a virus strain in Myanmar, 2020. Sci Rep 2021; 11:10203. [PMID: 33986354 PMCID: PMC8119731 DOI: 10.1038/s41598-021-89361-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2020] [Accepted: 03/23/2021] [Indexed: 01/19/2023] Open
Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection is a major health concern globally. Genomic epidemiology is an important tool to assess the pandemic of coronavirus disease 2019 (COVID-19). Several mutations have been reported by genome analysis of the SARS-CoV-2. In the present study, we investigated the mutational and phylogenetic analysis of 30 whole-genome sequences for the virus's genomic characteristics in the specimens collected in the early phase of the pandemic (March-June, 2020) and the sudden surge of local transmission (August-September, 2020). The four samples in the early phase of infection were B.6 lineage and located within a clade of the samples collected at the same time in Singapore and Malaysia, while five returnees by rescue flights showed the lineage B. 1.36.1 (three from India), B.1.1 (one from India) and B.1.80 (one from China). However, there was no evidence of local spread from these returnees. Further, all 19 whole-genome sequences collected in the sudden surge of local transmission showed lineage B.1.36. The surge of the second wave on SARS-CoV-2 infection was linked to the single-introduction of a variant (B.1.36) that may result from the strict restriction of international travel and containment efforts. These genomic data provides the useful information to disease control and prevention strategy.
Collapse
Affiliation(s)
- Myat Htut Nyunt
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar.
| | - Hnin Ohnmar Soe
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Kay Thi Aye
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Wah Wah Aung
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Yi Yi Kyaw
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Aung Kyaw Kyaw
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Theingi Win Myat
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Aung Zaw Latt
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Min Min Win
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Aye Aye Win
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Yin Min Htun
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Khaing Mar Zaw
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Phyu Win Ei
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Kyaw Thu Hein
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Lai Lai San
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Nan Aye Thida Oo
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Htin Lin
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Nan Cho Nwe Mon
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Khin Than Yee
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Khin Lapyae Htun
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Lynn Pa Pa Aye
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Yamin Ko Ko
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Thitsar Htet Htet Htoo
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Kham Mo Aung
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Hnin Azili
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Soe Soe Han
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Ni Ni Zaw
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Su Mon Win
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Wai Myat Thwe
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Thin Thin Aye
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Myat Su Hlaing
- Department of Microbiology, University of Medicine-2, Yangon, Republic of the Union of Myanmar
| | - Wai Yan Minn
- Department of Microbiology, University of Medicine-2, Yangon, Republic of the Union of Myanmar
| | - Pyae Phyo Thu
- Department of Microbiology, University of Medicine-2, Yangon, Republic of the Union of Myanmar
| | - Hlaing Myat Thu
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| | - Zaw Than Htun
- Department of Medical Research, Ministry of Health and Sports, 5, Ziwaka Road, Dagon, Yangon, 11191, Republic of the Union of Myanmar
| |
Collapse
|