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Niño MC, Ferrer LE, Díaz JC, Aguirre D, Pabón S, Pasternak JJ. Radiologic assessment of gastric emptying of water-soluble contrast media: New data security from a longitudinal study. Rev Esp Anestesiol Reanim (Engl Ed) 2019; 66:72-77. [PMID: 30424890 DOI: 10.1016/j.redar.2018.08.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Revised: 07/16/2018] [Accepted: 08/09/2018] [Indexed: 06/09/2023]
Abstract
BACKGROUND AND OBJECTIVES Practice guidelines for preoperative fasting have not clearly established the fasting time needed after oral administration of water-soluble contrast media. The aim of this study was to determine the time required for the gastric emptying during the water-soluble contrast media in patients with acute abdominal pain. METHODS This prospective longitudinal study included sixty-eight patients older than 18 years of age with acute abdominal pain, who required a water-soluble contrast media enhanced abdominal computed tomography study. Plain radiographs were obtained hourly until complete the gastric emptying. Patients with probable bowel obstruction were not included in the study. RESULTS A total of 31 (45,6%), 54 (79,4%), and 64 (94,1%) patients achieved a complete gastric clearance of barium in 1, 2 and 3 hours, respectively. All patients achieved complete emptying of water-soluble contrast media within 6 hours. Gastric emptying time was not associated with gender (P=0,44), body mass index (P=.35), fasting time prior to water-soluble contrast media intake (P=0,12), administration of opioids in the emergency room (P=0,7), and the presence of comorbidities (P=0,36). CONCLUSION Ninety-four percent of the patients with acute abdominal pain achieved complete gastric emptying within 3hours after the administration of water-soluble contrast media. All of them achieved complete gastric emptying within 6hours. The results suggested 6hours after oral intake of the contrast media is enough to complete transit of water-soluble contrast media through the stomach and avoid unnecessary risks.
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Affiliation(s)
- M C Niño
- Departamento de Anestesia, Hospital Universitario Fundación Santa Fe de Bogotá, Bogotá, Colombia; Facultad de Medicina, Universidad de los Andes, Bogotá, Colombia.
| | - L E Ferrer
- Departamento de Anestesia, Hospital Universitario Fundación Santa Fe de Bogotá, Bogotá, Colombia; Facultad de Medicina, Universidad de los Andes, Bogotá, Colombia
| | - J C Díaz
- Departamento de Anestesia, Hospital Universitario Fundación Santa Fe de Bogotá, Bogotá, Colombia
| | - D Aguirre
- Departamento de Radiología, Hospital Universitario Fundación Santa Fe de Bogotá, Bogotá, Colombia
| | - S Pabón
- Departamento de Anestesia, Hospital Universitario Fundación Santa Fe de Bogotá, Bogotá, Colombia
| | - J J Pasternak
- Departamento de Anestesiología, Mayo Clinic College of Medicine, Rochester, Minnesota, EE. UU
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Aiudi CM, Sharpe EE, Arendt KW, Pasternak JJ, Sviggum HP. Anesthetic management of two parturients with cerebral palsy and prior selective dorsal rhizotomy. Int J Obstet Anesth 2018; 34:105-108. [PMID: 29352624 DOI: 10.1016/j.ijoa.2017.12.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 11/16/2017] [Accepted: 12/10/2017] [Indexed: 10/18/2022]
Abstract
Selective dorsal rhizotomy is a surgical spine procedure used to reduce spasticity in patients with upper motor neuron dysfunction caused by conditions such as cerebral palsy. The optimal anesthetic approach for obstetric patients who have undergone a selective dorsal rhizotomy is unknown. The use and efficacy of neuraxial anesthesia in these patients has not been described. We describe the use of neuraxial anesthesia in two patients with prior selective dorsal rhizotomy. Unless contraindicated for other reasons, a neuraxial anesthetic approach appears to be an effective option in patients with a history of a selective dorsal rhizotomy.
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Affiliation(s)
- C M Aiudi
- Mayo Clinic School of Medicine, Rochester, MN, USA
| | - E E Sharpe
- Department of Anesthesiology and Perioperative Medicine, Mayo Clinic, Rochester, MN, USA.
| | - K W Arendt
- Department of Anesthesiology and Perioperative Medicine, Mayo Clinic, Rochester, MN, USA
| | - J J Pasternak
- Department of Anesthesiology and Perioperative Medicine, Mayo Clinic, Rochester, MN, USA
| | - H P Sviggum
- Department of Anesthesiology and Perioperative Medicine, Mayo Clinic, Rochester, MN, USA
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Burkle CM, Pasternak JJ, Armstrong MH, Keegan MT. Patient perspectives on informed consent for anaesthesia and surgery: American attitudes. Acta Anaesthesiol Scand 2013; 57:342-9. [PMID: 23228008 DOI: 10.1111/aas.12037] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/14/2012] [Indexed: 12/01/2022]
Abstract
BACKGROUND Principles of informed consent are ethically, morally, and legally grounded in physicians' responsibility to patients. This study examined patient expectations regarding the informed consent during the perioperative process, specifically risk information exchange, preferred method and timing of delivery, and the roles that patient anxiety and understanding might play. METHODS Five hundred patients seen in our pre-operative clinic were surveyed by written questionnaire. Patients were asked about their level of agreement with a number of statements pertaining to informed consent and their preferences for discussion of types of risks. Anxiety concerns, impact of ability to understand complexities of care, preferences for timing, and method of presentation were assessed. RESULTS Four hundred eleven of 500 surveys (82%) were completed. A majority of respondents (92% and 80%, respectively) believed the risk of common but less consequential complications and rare yet severe complications should be discussed. Only 21% agreed that anxiety generated by discussion of risks outweighed benefit and only 6% agreed that discussion of risks should be restricted based on patient inability to appreciate complexities of care. Discussion was preferred on the day of surgery, 1 week before, and 1 month before in 46%, 35%, and 16% of respondents, respectively, and independent of level of anxiety generated by such discussion (P = 0.87). Respondents preferred discussion with their anaesthesia provider alone (44%) or in combination with written information (52%) as compared with written information only (4%) (P < 0.01). CONCLUSIONS Greater awareness of patient preferences and expectations may result in better information exchange between anaesthesia providers and their patients.
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Affiliation(s)
- C M Burkle
- Department of Anesthesiology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
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Abstract
The complete hydrolysis of cellulose requires a number of different enzymes including endoglucanase, exoglucanase and beta-glucosidase. These enzymes function in concert as part of a 'cellulase'complex called a cellulosome. In order (i) to develop a better understanding of the biochemical nature of the cellulase complex as well as the genetic regulation of its integral components and (ii) to utilize cellulases either as purified enzymes or as part of an engineered organism for a variety of purposes, researchers have, as a first step, used recombinant DNA technology to isolate the genes for these enzymes from a variety of organisms. This review provides some perspective on the current status of the isolation, characterization and manipulation of cellulase genes and specifically discusses (i) strategies for the isolation of endoglucanase, exoglucanase and beta-glucosidase genes; (ii) DNA sequence characterization of the cellulase genes and their accompanying regulatory elements; (iii) the expression of cellulase genes in heterologous host organisms and (iv) some of the proposed uses for isolated cellulase genes.
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Affiliation(s)
- B R Glick
- Department of Biology, University of Waterloo, Ontario, Canada
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Sun X, Griffith M, Pasternak JJ, Glick BR. Low temperature growth, freezing survival, and production of antifreeze protein by the plant growth promoting rhizobacterium Pseudomonas putida GR12-2. Can J Microbiol 1995; 41:776-84. [PMID: 7585354 DOI: 10.1139/m95-107] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The plant growth promoting rhizobacterium Pseudomonas putida GR12-2 was originally isolated from the rhizosphere of plants growing in the Canadian High Arctic. Here we report that this bacterium was able to grow and promote root elongation of both spring and winter canola at 5 degrees C, a temperature at which only a relatively small number of bacteria are able to proliferate and function. In addition, the bacterium survived exposure to freezing temperatures, i.e., -20 and -50 degrees C. In an effort to determine the mechanistic basis for this behaviour, it was discovered that following growth at 5 degrees C, P. putida GR12-2 synthesized and secreted to the growth medium a protein with antifreeze activity. Analysis of the spent growth medium, following concentration by ultrafiltration, by SDS-polyacrylamide gel electrophoresis revealed the presence of one major protein with a molecular mass of approximately 32-34 kDa and a number of minor proteins. However, at this point it is not known which of these proteins contains the antifreeze activity.
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Affiliation(s)
- X Sun
- Department of Biology, University of Waterloo, ON, Canada
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Hong Y, Pasternak JJ, Glick BR. Overcoming the metabolic load associated with the presence of plasmid DNA in the plant growth promoting rhizobacteriumPseudomonas putidaGR12-2. Can J Microbiol 1995. [DOI: 10.1139/m95-083] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
When the broad host range plasmid vector pGSS15 was used to genetically transform the plant growth promoting rhizobacterium Pseudomonas putida GR12-2, the transformants were physiologically debilitated. It was postulated that the expression of the β-lactamase gene of pGSS15 caused a metabolic load resulting in the impaired functioning of the bacterium. To test this hypothesis, derivatives of pGSS15 that either lack the β-lactamase gene (pYH122) or in which a β-glucosidase gene was substituted for the β-lactamase gene (pYH124) were constructed and examined to see whether their presence also impaired the functioning of P. putida GR12-2. On the basis of growth rates, siderophore production, and the ability to stimulate canola root elongation in sterile growth pouches, neither of the newly constructed plasmids debilitated P. putida GR12-2. In addition, P. putida GR12-2 transformed with pYH124 facilitated the proliferation of the bacterium in minimal medium containing cellobiose at low temperature. This latter trait may enable P. putida GR12-2 to persist in the soil in competition with other microorganisms.Key words: plant growth promoting rhizobacteria, PGPR, bacterial fertilizer, soil bacteria, metabolic load, β-glucosidase
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Tang W, Pasternak JJ, Glick BR. Persistence in soil of the plant growth promoting rhizobacterium Pseudomonas putida GR12-2 and genetically manipulated derived strains. Can J Microbiol 1995. [DOI: 10.1139/m95-060] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Transformation of the plant growth promoting rhizobacterium Pseudomonas putida GR12-2 with broad-host-range vectors can affect the growth of the bacterium, its ability to promote root elongation of canola seedlings under gnotobiotic conditions, and its persistence in soil. Plasmid transformants, and a transposon-mutagenized derivative of P. putida GR12-2, fell into two classes with respect to these three attributes: strains that were clearly diminished in these capabilities and strains that behaved like the nontransformed wild type. These differences can be accounted for by the imposition of a metabolic load that is created by some types of genetic modification that results in a physiological impairment of the modified bacterium and decreases its ability to function as a plant growth promoting rhizobacterium.Key words: plant growth promoting rhizobacteria, PGPR, bacterial fertilizer, soil bacteria, soil persistence, microcosm.
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Jacobson CB, Pasternak JJ, Glick BR. Partial purification and characterization of 1-aminocyclopropane-1-carboxylate deaminase from the plant growth promoting rhizobacterium Pseudomonas putida GR12-2. Can J Microbiol 1994. [DOI: 10.1139/m94-162] [Citation(s) in RCA: 238] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The plant growth promoting rhizobacterium Pseudomonas putida GR12-2 can utilize 1-aminocyclopropane-1-carboxylate (ACC) as a sole nitrogen source because it possess the unusual enzyme ACC deaminase, which hydrolyzes ACC to ammonia and α-ketobutyrate. This enzyme, which is thought to be intimately involved in the mechanism that the bacterium uses to promote root elongation in developing canola seedlings, was partially purified and characterized. The native form of the enzyme is a trimer with a molecular mass of 105 kDa and a subunit molecular mass of 35 kDa. ACC deaminase activity is found in the cytoplasm of the bacterium, is induced by low levels (i.e., 100 nM) of ACC, and has a temperature optimum at approximately 30 °C and a pH optimum of 8.5. These properties are very similar to those reported for ACC deaminase from another soil bacterium, Pseudomonas sp. strain APC.Key words: 1-aminocyclopropane-1-carboxylate, ACC, plant growth promoting rhizobacteria, PGPR, ACC deaminase, bacterial fertilizer.
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Glick BR, Jacobson CB, Schwarze MMK, Pasternak JJ. 1-Aminocyclopropane-1-carboxylic acid deaminase mutants of the plant growth promoting rhizobacterium Pseudomonas putida GR12-2 do not stimulate canola root elongation. Can J Microbiol 1994. [DOI: 10.1139/m94-146] [Citation(s) in RCA: 171] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The plant growth promoting rhizobacterium Pseudomonas putida GR12-2 was mutagenized with nitrosoguanidine and three separate mutants that were unable to utilize 1-aminocyclopropane-1-carboxylic acid (ACC) as a sole nitrogen source were selected. These mutants are devoid of the ACC deaminase activity that is present in wild-type P. putida GR12-2 cells. Only wild-type cells, but not any of the ACC deaminase mutants, promoted root elongation of developing canola seedlings under gnotobiotic conditions. These results are interpreted in terms of a model in which P. putida GR12-2 promotes root elongation by binding to germinating seeds and sequesters and hydrolyzes some of the unbound ACC, thereby lowering the level of ACC and hence the endogenous ethylene concentration, allowing the roots to grow longer.Key words: 1-aminocyclopropane-1-carboxylate, ACC, plant growth promoting rhizobacteria, PGPR, ACC deaminase, bacterial fertilizer.
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Herbert RG, Pasternak JJ, Fernando MA. Characterization of Eimeria tenella unsporulated oocyst-specific cDNA clones. J Parasitol 1992; 78:1011-8. [PMID: 1491292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
A cDNA library was constructed with poly(A)+ RNA from unsporulated oocysts of Eimeria tenella in pUC18. After screening, 4 cDNA clones that hybridized to RNA of unsporulated and sporulating oocysts but not to RNA of either sporulated oocysts or second generation merozoites were isolated and characterized. Each of the cDNA clones is unique. The loci for 2 of the clones are on E. tenella chromosome 7, the site of the third is located on chromosome 6 and the last clone hybridizes, for the most part, to chromosome 5 but also to other E. tenella chromosomes. The cognate RNAs for each of the cDNA clones show differential patterns of hybridization during oocyst sporulation with the levels of RNA being low at the start of sporulation (0 hr), increasing to peak levels between 6.5 and 23 hr after the onset of sporulation and, in each case, decreasing to low hybridization levels at 48 hr after initiation of sporulation. These results establish that specific mRNA levels are differentially regulated during sporulation.
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Affiliation(s)
- R G Herbert
- Department of Pathology, University of Guelph, Ontario, Canada
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12
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Pickett-Seltner RL, Doughty MJ, Pasternak JJ, Sivak JG. Proteins of the vitreous humor during experimentally induced myopia. Invest Ophthalmol Vis Sci 1992; 33:3424-9. [PMID: 1428715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Significant myopia was evident within 14 days after a translucent goggle was placed over the eye of a newly hatched chick. This myopia was characterized by large negative refractive error, increased axial and equatorial eye lengths, and increased wet eye weight. The volume of the vitreous humor increased in the myopic eye, because of a signficant accumulation of liquid vitreous humor. The protein concentration of the vitreous humor of the myopic and nonmyopic eyes was greater at day 14 than at day 0 (ie, first day after hatching). Moreover, over this time, the protein concentration in the liquid component decreased, whereas the protein concentration in the gel component increased in both myopic and nonmyopic eyes. No difference was found in the protein concentrations between the myopic and nonmyopic eye at day 14. Polyacrylamide gel electrophoresis revealed changes in band position and intensity of individual protein compoents between days 0 and 14. No major differences were found in the gel or the liquid vitreous humor between the myopic and the nonmyopic eyes. Comparison of vitreous humor proteins with proteins from the plasma showed that some but not all of the proteins in the vitreous had the same apparent molecular masses as proteins from these sources.
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13
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Pasternak JJ, Glick BR. Molecular evolutionary analyses of the small and large subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase. ACTA ACUST UNITED AC 1992. [DOI: 10.1139/b92-092] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The molecular evolution of the amino acid sequences of the mature small and large subunits of ribulose-1,5-bisphosphate carboxylase/oxygense (Rubisco) was determined. The dataset for each subunit consisted of sequences from 39 different taxa of which 22 are represented with sequence information for both subunits. Phylogenetic trees were reconstructed using distance matrix, parsimony and simultaneous alignment and phylogeny methods. For the small subunit, the latter two methods produced similar trees that differed from the topology of the distance matrix tree. For the large subunit, each of the three tree-building methods yielded a distinct tree. Except for the distance matrix small subunit tree, the tree-building methods produced topologies for the small and large subunit sequences from the nonflowering plant taxa that, for the most part, agree with current taxonomic schemes. With the full datasets, the lack of consistency both among the various trees and with conventional taxonomic relationships was most evident with the Rubisco sequences from angiosperms. It is unlikely that current tree-building methods will be able to reconstruct an unambiguous molecular evolution of either of the Rubisco subunits. Molecular trees, regardless of methodology, showed similar topologies for the small and large subunits from the 22 taxa from which both subunits have been sequenced, indicating that the subunits have changed to the same extent over time. In this case, similar trees were formed because only 4 of the 22 taxa were from dicots. Key words: ribulose-1,5-bisphosphate carboxylase/oxygenase, amino acid sequence, molecular evolution, phyletic trees.
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Krone PH, Snow A, Ali A, Pasternak JJ, Heikkila JJ. Comparison of regulatory and structural regions of the Xenopus laevis small heat-shock protein-encoding gene family. Gene X 1992; 110:159-66. [PMID: 1537552 DOI: 10.1016/0378-1119(92)90643-4] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
We have isolated several unique Xenopus laevis hsp30 (encoding heat-shock protein 30) genomic clones, one of which contains two complete hsp30 genes (hsp30C and hsp30D), as well as the promoter and N-terminal coding region of a third gene (hsp30E). Nucleotide sequence and restriction enzyme analysis revealed that this gene cluster is different from a cluster isolated previously. The hsp30C and hsp30D genes encode proteins of approx. 24 kDa. In all, the hsp30 gene family contains a minimum of seven genes. The strand exchange and breakage of the duplication events which generated this gene family appear to have occurred within tracts of DNA which potentially can assume a Z-DNA conformation. Comparing the amino acid (aa) sequences of each known Hsp30 protein with bovine alpha-crystallin revealed a high degree of shared conservation of aa that constitute the major structural feature(s) of alpha-crystallin.
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Affiliation(s)
- P H Krone
- Department of Biology, University of Waterloo, Ontario, Canada
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15
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Hong Y, Pasternak JJ, Glick BR. Biological consequences of plasmid transformation of the plant growth promoting rhizobacterium Pseudomonas putida GR12-2. Can J Microbiol 1991. [DOI: 10.1139/m91-137] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Pseudomonas putida GR12-2, a plant growth promoting rhizobacterium, was transformed with the broad host range plasmid pGSS15. The presence of the plasmid caused (i) a decrease in cell generation times, (ii) an altered pattern of cell proteins, (iii) an inhibition of the enhancement of canola root elongation, (iv) impairment of nitrogen fixation, and (v) a decrease in siderophore production. Strains that were cured of pGSS15, on the other hand, re-established growth rates, levels of siderophore production, and canola root elongation capabilities equivalent to nontransformed P. putida GR12-2. Thus, the transforming plasmid imposes a metabolic load on the recipient bacteria that impacts on a number of different energy-dependent processes. Key words: plant growth promoting rhizobacteria, nitrogen fixation, Pseudomonas, transformation, metabolic load.
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Wolff BR, Glick BR, Pasternak JJ. DNA sequence analysis of endoglucanase genes from Pseudomonas fluorescens subsp. cellulosa and Pseudomonas sp. NCIB 8634. ACTA ACUST UNITED AC 1991; 6:285-90. [PMID: 1366996 DOI: 10.1007/bf01575875] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
The DNA of two previously isolated recombinant clones, one from Pseudomonas sp. NCIB 8634 (= Cellvibrio mixtus) (pPC71) and another from Pseudomonas fluorescens subsp. cellulosa (pPFC4) that express endoglucanase activity in E. coli was sequenced. Plasmid pPC71 had three open reading frames, two of which include portions of plasmid pBR322. The third open reading frame occurs entirely within the Pseudomonas DNA insert and encodes a protein with a molecular mass of 5845 Da. The DNA insert in pPFC4 was found to contain an open reading frame (PFC-ORF) that encodes a protein of 32189 Da. The major endoglucanase produced in E. coli cells carrying pPFC4 is about 30,000 Da. It is concluded that PFC-ORF encodes this endoglucanase. Both ribosome and catabolite gene activator protein binding sites lie upstream from the initiating codon of PFC-ORF. An interesting feature of the PFC-ORF protein is the presence of amino acid motifs Val-Ser-Ser-Ser-Ser and Val-Val-Ser-Ser-Ser-Ser-Ser that occur within a 25 amino acid span.
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Affiliation(s)
- B R Wolff
- Department of Biology, University of Waterloo, Ontario, Canada
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Abstract
The molecular karyotypes of five species of chicken coccidia, viz., Eimeria acervulina, E. brunetti, E. maxima, E. necatrix, and E. tenella, were determined using field inversion gel electrophoresis (FIGE). Each species has a distinctive set of resolvable chromosomes which range from about 1 to greater than 5.7 megabases. We were able to resolve at least 8 chromosomes for E. acervulina, 5 for E. brunetti, 10 for E. maxima, 6 for E. necatrix, and 9 for E. tenella. If the value of 67 megabases for the genomic DNA of E. tenella is accurate, then under the conditions used here only about 60% of its chromosomal complement has been resolved.
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Affiliation(s)
- M A Fernando
- Department of Pathology, University of Guelph, Ontario, Canada
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18
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Glick BR, Pasternak JJ, Downer RGH, Dumbroff EB, Winter KA. Development and enhancement of agricultural biotechnology in some countries in Latin America. World J Microbiol Biotechnol 1991; 7:164-70. [DOI: 10.1007/bf00328986] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/1990] [Revised: 09/24/1990] [Accepted: 10/05/1990] [Indexed: 10/26/2022]
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Retterath MA, Pasternak JJ. Genomic arrangement of repeated PS700 elements in the nematode Panagrellus silusiae. Genome 1990; 33:164-9. [PMID: 2358188 DOI: 10.1139/g90-027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
When genomic DNA from the free-living nematode Panagrellus silusiae is digested with the restriction endonuclease BamHI and separated by electrophoresis, a band in the 700 base pair size range is evident after ethidium bromide staining. One of the 0.7-kilobase fragments (PS700-1) was characterized and found to be a member of a moderately repetitive DNA family (T. Warren and J.J. Pasternak. 1988. Nucleic Acids Res. 16: 10,833-10,847). In the current study, DNA sequence analyses of three independently isolated copies of the PS700 DNA family showed the same nucleotide sequence and greater than 98% similarity to PS700-1. Four EMBL-4 bacteriophage clones were isolated from a Panagrellus genomic DNA library with PS700-1 as the probe and were analyzed by restriction endonuclease site mapping and Southern blot DNA hybridization. These clones contain 31 copies of the PS700 DNA family. In each case, the units are arranged in head-to-tail arrays. One of the EMBL-4 clones contains copies of a novel variant of the PS700 elements. The maintenance of both nucleotide sequence and restriction endonuclease restriction site homogeneity among members of the dispersed PS700 DNA family may denote a functional role for these sequences.
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Affiliation(s)
- M A Retterath
- Department of Biology, University of Waterloo, Ont., Canada
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21
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Glick BR, Butler BJ, Mayfield CI, Pasternak JJ. Effect of transformation ofAzotobacter vinelandii with the low copy number plasmid pRK290. Curr Microbiol 1989. [DOI: 10.1007/bf01568932] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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22
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Abstract
Nematodes have a number of biological attributes that make them amenable for molecular studies. In our laboratory, attention has focused on (i) determining the polypeptide composition of cuticles, (ii) using monoclonal antibodies to identify epitopes among the cuticular proteins, (iii) visualizing the sites of collagenous components within the cuticle of Ascaris by immunolocalization, and (iv) sequencing a moderately repetitive DNA element that is found, with extensive similarity, in the genomes of Ascaris and Panagrellus. The role of these and other molecular studies in understanding the biology of nematodes is discussed.
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Pasternak JJ. Molecular studies of animal systems/Études au niveau moléculaire des systèmes animaux: Introduction. CAN J ZOOL 1988. [DOI: 10.1139/z88-382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The 26th annual meeting of the Canadian Society of Zoologists, held in May 1987, included a symposium entitled Molecular Studies of Animal Systems. Certainly, a recent and pervasive research thrust in the study of animals has been the accessibility of molecular biology techniques to complement existing research strategies. In organizing this session, Dr. Marilyn Scott had two major objectives: first, to demonstrate how studies at the molecular level facilitate an understanding of the biology of animals and second, to use examples of research programmes that would be of interest to zoologists, in particular those concerned with insect and fish physiology, parasitology, and evolutionary biology. An attempt was made to provide some breadth without being too divergent. The specific research topics derived from the original lectures and included in this issue of the Canadian Journal of Zoology describe and discuss (i) molecular commonality of cuticular and genomic structures between a free-living nematode and a parasitic one, (ii) regulation of vitellogenesis in the locust, and (iii) characterization at the molecular level of fish antifreeze proteins. These papers illustrate how various molecular biology methodologies can be used to resolve problems of biological interest.
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24
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Abstract
Digestion of genomic DNA from the nematodes Panagrellus silusiae and Ascaris lumbricoides with restriction endonuclease BamH1 releases a 0.7 kilobase (kb) fragment. The 0.7 kb fragment from both nematodes was cloned onto E. coli plasmid pUC19. Using representative clones as DNA hybridization probes, it was found that (i) the BamH1 fragments cross-hybridize; (ii) a ladder-effect with multiples of 0.7 kb was evident in both species after hybridization to genomic DNA and (iii) the genomic copy number of BamH1 elements is 150 and 195 for P. silusiae and A. lumbricoides respectively. DNA sequence analysis of the inserts, AL700-1 and PS700-1, revealed nucleotide blocks with over 85% similarity. No open reading frames are present in either DNA fragment. Neither fragment hybridizes to genomic DNA from Caenorhabditis elegans. Northern blot hybridization indicated that the 0.7 kb element is transcribed into poly(A)(-)-RNA in P. silusiae; but, is not transcribed in adult Ascaris muscle. Thus, P. silusiae and A. lumbricoides share a homologous, tandemly arrayed, moderately repetitive DNA family.
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Affiliation(s)
- T Warren
- Department of Biology, University of Waterloo, Ontario, Canada
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25
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Glick BR, Menhart N, Soong NW, Farmer WH, Viswanatha T, Pasternak JJ. Isolation and partial characterization of siderophore mutants ofAzotobacter vinelandii. Curr Microbiol 1988. [DOI: 10.1007/bf01570875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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26
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Abstract
Monoclonal antibodies that were raised against cuticular components from the free-living nematode Panagrellus silusiae were found to react with a cuticular collagenous domain from Ascaris lumbricoides. One of these monoclonal antibodies was used to localize the collagenous epitope within sectioned Ascaris cuticles. By indirect immunofluorescence, accessible binding sites were observed in the basal zone of the cuticle. Immunological staining occurred in the innermost lamella of the basal zone, i.e., basal lamella, in which the fibrillar palisade gave a strong response. The three layers of the spiral fiber system of the basal zone exhibited a distinctive immunofluorescence pattern. In each of these layers, irregular shaped blocks, often quadrangular, were immunostained; whereas, adjacent blocks were immunonegative. Immunostaining was, for the most part, absent from the cortical and medial zones of the cuticle as well as from other tissues within the worm.
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Affiliation(s)
- T J White
- Department of Biology, University of Waterloo, Ontario, Canada
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27
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Abstract
The principle objectives when creating a robust DNA diagnostic assay system are sensitivity, specificity and minimal read-time. To meet these ends, depending on the specifically defined test, various aspects of molecular hybridization methodology must be optimized. In particular, among other things, attention has focused on (i) formulating highly specific probes; (ii) devising sensitive nonisotopic detection systems, (iii) minimizing the extent of preparing clinical samples for assaying, (iv) amplifying the target sequence to augment sensitivity and (v) enhancing hybridization kinetics to speed up the reaction period. In this article, some recent studies that are directed to the development of nucleic acid hybridization systems for clinical diagnosis of microorganisms are considered.
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Affiliation(s)
- J J Pasternak
- Department of Biology, University of Waterloo, Ontario, Canada
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28
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Pickett-Seltner RL, Sivak JG, Pasternak JJ. Experimentally induced myopia in chicks: morphometric and biochemical analysis during the first 14 days after hatching. Vision Res 1988; 28:323-8. [PMID: 3414019 DOI: 10.1016/0042-6989(88)90160-5] [Citation(s) in RCA: 60] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Application of a translucent goggle over the chick eye on the first day after hatching led to the development of myopia. By the 14th day, the mean refractive error was about -10.0 D. Significant increases in axial and equatorial diameters were observed when the treated eyes were compared with untreated contralateral eyes. The lens did not appear to be affected, either optically or biochemically. A temporal study showed that changes were evident within 2 days of goggle application, and were significantly established 5 days later. Total soluble protein concentrations of the treated and untreated eyes were not significantly different, nor were the dry weights of the sclera and cornea. The enlargement of the eyeball that was observed in the experimental induction of myopia seems due to an increase in fluid within the eye. The data are consistent with the view that refractive properties of the chick eye are dependent upon the clarity of the visual image and modulation of these features occurs after hatching.
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Martin LH, Bols NC, Pasternak JJ. Monoclonal antibodies to cuticular proteins of Panagrellus silusiae: identification of a common collagenous epitope. Biochem Cell Biol 1986. [DOI: 10.1139/o86-101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The cuticle of Panagrellus silusiae contains at least 20 proteins that are linked to each other, to some extent, by disulfide bonds. These components range in apparent molecular mass from about 40 to 270 kilodaltons (kDa). After denaturation of cuticular fragments that had been extensively digested with pepsin, electrophoresis revealed five intact components (95, 117, 125, 144, and 197 kDa). Virtually all of the other native cuticular components are susceptible to degradation by both pepsin and collagenase, which indicates that these proteins contain both noncollagenous and collagenous sectors. Monoclonal antibodies were raised against reduced and solubilized cuticular preparation from Panagrellus. Each of the monoclonal antibodies reacted to a reduced and solubilized cuticular preparation from Ascaris lumbricoides and none cross-reacted with vertebrate collagens (including types I, II, in, IV, V, and VI), synthetic collagen-like polymers, or glycoproteins. Immunoblotting showed that each monoclonal antibody reacted with a group of, at least, seven cuticular components. Based on the susceptibility of these components to collagenase and pepsin, it was deduced that the common epitope is a shared collagenous domain.
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Wolff BR, Mudry TA, Glick BR, Pasternak JJ. Isolation of Endoglucanase Genes from
Pseudomonas fluorescens
subsp.
cellulosa
and a
Pseudomonas
sp. Appl Environ Microbiol 1986; 51:1367-9. [PMID: 16347092 PMCID: PMC239075 DOI: 10.1128/aem.51.6.1367-1369.1986] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Endoglucanase genes from
Pseudomonas fluorescens
subsp.
cellulosa
and
Pseudomonas
sp. were cloned and characterized. DNA hybridization studies showed that these genes are homologous and that each species has one copy of the gene per genome. The DNA fragment from
Pseudomonas
sp. codes for, at most, a 23-kilodalton endoglucanase.
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Affiliation(s)
- B R Wolff
- Department of Biology, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1
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Abstract
Genetic transformation of Azotobacter vinelandii by the introduction of broad-host-range plasmid DNA (i.e., pRK2501, RSF1010, or pGSS15) causes a number of physiological changes. As shown here, the capacity for nitrogen fixation, mean cell size, and synthesis of siderophores are decreased, whereas the production of capsular slime is enhanced. These findings suggest that the presence of plasmid DNA imposes a "metabolic load" on Azotobacter vinelandii. Therefore, it cannot be assumed a priori that the introduction of plasmid DNA into Azotobacter vinelandii will not disrupt some normal physiological processes. The implications of these findings are discussed, specifically in the context of developing Azotobacter vinelandii as an effective bacterial fertilizer by genetic manipulation.
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Abstract
Azotobacter vinelandii cells can be transformed at high frequencies with the broad-host-range plasmids pRK2501, RSF1010, and pGSS15, using a modification of the procedure developed by Page and von Tigerstrom (J. Bacteriol. 139:1058-1061, 1979) for chromosomal DNA-mediated transformation. The frequency of transformation per microgram of plasmid DNA per viable cell with pRK2501 and pGSS15 was about 5 X 10(-2) and 2 X 10(-2), respectively. With RSF1010, transformation frequencies ranged from 3 X 10(-4) to 4 X 10(-2). With each plasmid, the frequency of transformation was independent of the phase of the growth cycle. When concentrations of pRK2501 ranging from 0.1 to 51 micrograms of DNA were tested, the frequency of transformation was directly proportional to the amount of DNA. This linear response indicated that, although the uptake of plasmid DNA with this procedure may be inefficient, there is a high probability that once inside a cell the plasmid will be stably maintained. Cells that have been transformed with pRK2501 did not grow well on transforming medium which lacks iron and contains fixed nitrogen. However, on growth medium which contains iron and lacks fixed nitrogen, transformants produced distinctive colonies larger than those of nontransformed cells. Resistance to kanamycin due to transformation by pRK2501 was stably maintained for at least 10 successive generations in the absence of selective pressure. The present protocol should facilitate the molecular cloning of genes in Azotobacter spp.
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Abstract
The genetic engineering of plants by DNA-mediated gene transfer requires that efficient transformation systems be developed. Considerable progress has been made in manipulating the Ti plasmid of Agrobacterium tumefaciens as a vehicle for delivery of foreign genes into protoplasts of dicotyle-donous plants. Part of the Ti plasmid, the T-DNA, can be incorporated into the genome of the host cell; the T-DNA can carry a foreign DNA sequence which co-integrates with it; under normal conditions, the tumorigenic-causing portion of the T-DNA can be inactivated so that transformed protoplasts can be regenerated and T-DNA with an inserted foreign gene can be stably maintained during regeneration, meiosis and gamete formation. A foreign gene has yet to be expressed in regenerated plants although a T-DNA gene for opine synthesis can function in regenerates. Developing a more ubiquitous transformation system for monocotyledons is further from fruition. Based on transformation systems for simple eukaryotic organisms, it is reasonable to expect that a DNA vector which is capable of amplifying a novel plant gene and which contains both a drug resistance marker to facilitate the selection of transformed plant protoplasts and a species-specific autonomously replicating sequence to ensure the stable maintenance of the input gene in the recipient cell can be constructed.
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Affiliation(s)
- J J Pasternak
- Biology Department, University of Waterloo, Ontario, Canada
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Pasternak JJ, Thompson JE, Schultz TM, Zachariah K. A scanning electron microscopic study of the encystment of Acanthamoeba castellanii. Exp Cell Res 1970; 60:290-8. [PMID: 5424320 DOI: 10.1016/0014-4827(70)90517-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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