What do diatom indices indicate? Modeling the specific pollution sensitivity index

Diatoms are commonly used in environmental assessments to detect pollution and eutrophication. The specific pollution sensitivity index (SPI) is one of the most frequently used indices, which assigns scores to diatom taxa based on their sensitivity to pollution. The study analyzed diatom communities in the Duero River basin in Spain to examine the relationship between SPI scores and various limnological variables. A GLM model showed that phosphates, nitrites, and water temperature were the main factors explaining SPI variability. The study also reviews previous results using SPI for water quality monitoring in different world regions, highlighting the role of nutrients in general as major drivers of SPI values worldwide. Overall, the findings reinforce the reliability of SPI as a metric for biological monitoring in various watercourses.

European river typologies fail to capture diatom, fish, and macrophyte community composition

Typology systems are frequently used in applied and fundamental ecology and are relevant for environmental monitoring and conservation. They aggregate ecosystems into discrete types based on biotic and abiotic variables, assuming that ecosystems of the same type are more alike than ecosystems of different types with regard to a specific property of interest. We evaluated whether this assumption is met by the Broad River Types (BRT), a recently proposed European river typology system, that classifies river segments based on abiotic variables, when it is used to group biological communities. We compiled data on the community composition of diatoms, fishes, and aquatic macrophytes throughout Europe and evaluated whether the composition is more similar in site groups with the same river type than in site groups of different river types using analysis of similarities, classification strength, typical species analysis, and the area under zeta diversity decline curves. We compared the performance of the BRT with those of four region-based typology systems, namely, Illies Freshwater Ecoregions, the Biogeographic Regions, the Freshwater Ecoregions of the World, and the Environmental Zones, as well as spatial autocorrelation (SA) classifications. All typology systems received low scores from most evaluation methods, relative to predefined thresholds and the SA classifications. The BRT often scored lowest of all typology systems. Within each typology system, community composition overlapped considerably between site groups defined by the types of the systems. The overlap tended to be the lowest for fishes and between Illies Freshwater Ecoregions. In conclusion, we found that existing broad-scale river typology systems fail to delineate site groups with distinct and compositionally homogeneous communities of diatoms, fishes, and macrophytes. A way to improve the fit between typology systems and biological communities might be to combine segment-based and region-based typology systems to simultaneously account for local environmental variation and historical distribution patterns, thus potentially improving the utility of broad-scale typology systems for freshwater biota.

Effects of short-term hyposalinity stress on four commercially important bivalves: A proteomic perspective

Increased heavy rainfall can reduce salinity to values close to 0 in estuaries. Lethal and sublethal physiological and behavioural effects of decreases in salinity below ten have already been found to occur in the commercially important clam species Venerupis corrugata, Ruditapes decussatus and R. philippinarum and the cockle Cerastoderma edule, which generate an income of ∼74 million euros annually in Galicia (NW Spain). However, studies of the molecular response to hyposaline stress in bivalves are scarce. This 'shotgun' proteomics study evaluates changes in mantle-edge proteins subjected to short-term hyposaline episodes in two different months (March and May) during the gametogenic cycle. We found evidence that the mantle-edge proteome was more responsive to sampling time than to hyposalinity, strongly suggesting that reproductive stages condition the stress response. However, hyposalinity modulated proteome profiles in V. corrugata and C. edule in both months and R. philippinarum in May, involving proteins implicated in protein folding, redox homeostasis, detoxification, cytoskeleton modulation and the regulation of apoptotic, autophagic and lipid degradation pathways. However, proteins that are essential for an optimal osmotic stress response but which are highly energy demanding, such as chaperones, osmoprotectants and DNA repair factors, were found in small relative abundances. In both months in R. decussatus and in March in R. philippinarum, almost no differences between treatments were detected. Concordant trends in the relative abundance of stress response candidate proteins were also obtained in V. corrugata and C. edule in the different months, but not in Ruditapes spp., strongly suggesting that the osmotic stress response in bivalves is complex and possibly influenced by a combination of controlled (sampling time) and uncontrolled variables. In this paper, we report potential molecular targets for studying the response to osmotic stress, especially in the most osmosensitive native species C. edule and V. corrugata, and suggest factors to consider when searching for biomarkers of hyposaline stress in bivalves.

Myocardial bridging is significantly associated with myocardial infarction with non-obstructive coronary arteries

Background

Myocardial infarction with non-obstructive coronary arteries (MINOCA) is a common disorder characterized by the presence of clinical criteria for acute myocardial infarction in the absence of obstructive coronary artery disease on angiography. We aim to investigate the relationship between myocardial bridging (MB) and MINOCA.

Methods

An observational retrospective study was conducted on 15,036 patients who had been referred for coronary angiography and who fulfilled the Fourth Universal Definition of Myocardial Infarction. The study population was divided into STEMI and non-STEMI patients, from which we defined two main groups: the MINOCA group and the coronary artery disease (CAD) group. Statistical analyses were carried out by using SPSS, version 20.

Results

The prevalence of angiographic MB among the groups was significantly greater in the MINOCA group (2.9% vs. 0.8%). MINOCA accounted for 14.5% of spontaneous myocardial infarction, and the clinical presentation was frequently NSTEMI rather than STEMI (84.3% vs. 15.7%). After adjusting for confounders, multivariate analyses showed a positive association between MB and MINOCA [OR=3.28, 95% CI (2.34; 4.61) p<0.001]. Cardiovascular risk factors were less common in the MINOCA population, which was younger and more often female.

Conclusion

MB is a risk factor for MINOCA. Because MB prevalence differed significantly between the controls (CAD group) and cases (MINOCA group), which were positively associated to MB, it seems likely that MB would be a potential cause of MINOCA. Investigations for MB in MINOCA cases and especially in NSTEMI patients seem necessary.

Funding Acknowledgement

Type of funding sources: Public hospital(s). Main funding source(s): Rangueil Hospital

Current Concentrations of Zn, Cu, and As in Piggery Wastewater Compromise Nutrient Removals in Microalgae–Bacteria Photobioreactors Due to Altered Microbial Communities

Simple Summary

Photobioreactor systems based on consortia of microalgae and bacteria are a promising, efficient and sustainable alternative for treatment of wastewaters with high nitrogen content, such as piggery wastewater. In these biological systems, microorganisms play a key role in wastewater treatment by degradation of organic matter and accumulation of nutrients into the generated biomass. However, these wastewaters often contain high concentrations of zinc, copper and arsenic, which can severely affect the activity and growth of microorganisms, and so, the wastewater treatment performance. This article studies the effect of high concentrations of zinc, copper and arsenic on microbial communities, specifically microalgae and bacteria, in photobioreactors treating piggery wastewater, with the aim of elucidating their impact on wastewater treatment performance. For this purpose, the growth of microalgae and the composition and structure of bacterial communities exposed to these pollutants were studied. The performance of the reactors was also evaluated by determining the removal of nutrients, zinc, copper and arsenic. The results showed that high concentrations of zinc, copper and arsenic in piggery wastewater significantly affect the microbiome of the reactors without recovery after exposure to these contaminants, resulting in poorer performance of the reactors and compromising the environmental and health impact of treated effluents.

Abstract

The treatment of pig manure is a major environmental issue, and photobioreactors containing consortia of microalgae and bacteria have proven to be a promising and sustainable treatment alternative. This work studies the effect of Cu, Zn and As, three toxic elements frequently present in piggery wastewater, on the performance and microbiome of photobioreactors. After dopage with Zn (100 mg/L), Cu (100 mg/L), and As (500 µg/L), the high biomass uptake of Zn (69–81%) and Cu (81–83%) decreased the carbon removal in the photobioreactors, inhibited the growth of Chlorella sp., and affected heterotrophic bacterial populations. The biomass As uptake result was low (19%) and actually promoted microalgae growth. The presence of Cu and As decreased nitrogen removal, reducing the abundance of denitrifying bacterial populations. The results showed that metal(loid)s significantly affected 24 bacterial genera and that they did not recover after exposure. Therefore, this study makes an important contribution on the impact of the presence of metal(loid)s in piggery wastewater that compromises the overall performance of PBRs, and so, the environmental and health impact of treated effluents.

Integration of algae-based sewage treatment with anaerobic digestion of the bacterial-algal biomass and biogas upgrading

The domestic sewage treatment performance of an integrated anoxic-aerobic photobioreactor with biomass settling and recycling, coupled with anaerobic digestion of the produced bacterial-algal biomass and biogas upgrading in the photobioreactor was investigated. Hydraulic retention time in the photobioreactor initially was 4 days (stage I and II) and then reduced to 2.5 days (stage III). The integrated system supported high total organic carbon removals of 98.9 ± 1.1% regardless of the operational stage. A high total nitrogen removal of 90.8 ± 8.0% was recorded in the integrated system during the three operational stages, while total phosphorus removals accounted for 68.4 ± 20.1%, 68.3 ± 20.8% and 53.4 ± 25.0% in stages I, II and III, respectively. Biogas upgrading in the absorption column exhibited maximum removals of CO₂ and H₂S of 74.7 ± 3.0% and 99.0 ± 2.8%, respectively. Biomass settling and recycling resulted in overall improvement of biomass settleability.

DNA metabarcoding and morphological methods show complementary patterns in the metacommunity organization of lentic epiphytic diatoms

Diatoms are important organisms in freshwater ecosystems due to their position as primary producers and therefore, analyzing their assemblages provides relevant information on ecosystem functioning. Diatoms have historically been identified based on morphological traits, which is time-consuming and requires well-trained specialists. Nevertheless, DNA barcoding offers an alternative approach to overcome some limitations of the morphological method. Here, we assess if both approaches are comparable methods to study patterns and mechanisms (including environmental filtering and dispersal limitation) of epiphytic diatom metacommunities using a comprehensive dataset from 22 Mediterranean ponds at different taxonomic resolutions. We used a fragment of rbcL barcode gene combined with High-Throughput Sequencing to infer diatom community composition. The overall degree of correspondence between both approaches was assessed by Procrustean rotation analysis and Procrustean randomization tests, whereas the role of local environmental variables and geographical distances was studied using a comprehensive combination of BIOENV, Mantel tests and distance-based redundancy analysis. Our results showed a relatively poor correspondence in the compositional variation of diatom metacommunity between both approaches. We speculate that the incompleteness of the reference database and the bioinformatics processing are the biases most likely affecting the molecular approach, whereas the limited counting effort and the presence of cryptic species are presumably the major biases related with the morphological method. On the other hand, variation in diatom community composition detected with both approaches was strongly related to the environmental template, which may be related with the narrow community-environment relationships in diatoms. Nevertheless, we found no significant relationship between compositional variation and geographical distances. Overall, our work shows the complementary nature of both approaches and highlights the importance of DNA metabarcoding to address empirical research questions of community ecology in freshwaters, especially once the reference databases include most genotypes of occurring taxa and bioinformatics biases are overcome.

Assessment of the performance of an anoxic-aerobic microalgal-bacterial system treating digestate

The performance of an anoxic-aerobic microalgal-bacterial system treating synthetic food waste digestate at 10 days of hydraulic retention time via nitrification-denitrification under increasing digestate concentrations of 25%, 50%, and 100% (v/v) was assessed during Stages I, II and III, respectively. The system supported adequate treatment without external CO₂ supplementation since sufficient inorganic carbon in the digestate was available for autotrophic growth. High steady-state Total Organic Carbon (TOC) and Total Nitrogen (TN) removal efficiencies of 85-96% and 73-84% were achieved in Stages I and II. Similarly, PO₄^3--P removals of 81 ± 15% and 58 ± 4% were recorded during these stages. During Stage III, the average influent concentrations of 815 ± 35 mg TOC·L^-1, 610 ± 23 mg TN·L^-1, and 46 ± 11 mg PO₄^3--P·L^-1 induced O₂ limiting conditions, resulting in TOC, TN and PO₄^3--P removals of 85 ± 3%, 73 ± 3%, and 28 ± 16%, respectively. Digestate concentrations of 25% and 50% favored nitrification-denitrification mechanisms, whereas the treatment of undiluted digestate resulted in higher ammonia volatilization and hampered nitrification-denitrification. In Stages I and II, the microalgal community was dominated by Chlorella vulgaris and Cryptomonas sp., whereas Pseudoanabaena sp. was more abundant during Stage III. Illumina sequencing revealed the presence of carbon and nitrogen transforming bacteria, with dominances of the genera Gemmata, Azospirillum, and Psychrobacter during Stage I, II, and III, respectively. Finally, the high settleability of the biomass (98% of suspended solids removal in the settler) and average C (42%), N (7%), P (0.2%), and S (0.4%) contents recovered in the biomass confirmed its potential for agricultural applications, contributing to a closed-cycle management of food waste.

Innovative operational strategies in photosynthetic biogas upgrading in an outdoors pilot scale algal-bacterial photobioreactor

Three innovative operational strategies were successfully evaluated to improve the quality of biomethane in an outdoors pilot scale photobioreactor interconnected to an external absorption unit: i) the use of a greenhouse during winter conditions, ii) a direct CO₂ stripping in the photobioreactor via air stripping during winter conditions and iii) the use of digestate as make-up water during summer conditions. CO₂ concentrations in the biomethane ranged from 0.4% to 6.1% using the greenhouse, from 0.3% to 2.6% when air was injected in the photobioreactor and from 0.4% to 0.9% using digestate as make up water. H₂S was completely removed under all strategies tested. On the other hand, CH₄ concentrations in biomethane ranged from 89.5% to 98.2%, from 93.0% to 98.2% and from 96.3% to 97.9%, when implementing strategies i), ii) and iii), respectively. The greenhouse was capable of maintaining microalgae productivities of 7.5 g m^-2 d^-1 during continental weather conditions, while mechanical CO₂ stripping increased the pH in order to support an effective CO₂ and H₂S removal. Finally, the high evaporation rates during summer conditions allowed maintaining high inorganic carbon concentrations in the cultivation broth using centrate, which provided a cost-effective biogas upgrading.

AB1055 CERTOLIZUMAB PEGOL: A SAFE AND EFFICIENT TREATMENT IN PATIENTS WITH UVEITIS DURING PREGNANCY

Background:

Anti-TNFα agents are useful in uveitis(1-5).Certolizumab pegol (CZP) differs from other anti-TNFα agents due to its limited placental transfer.

Objectives:

To assess efficacy and safety of CZP in women with uveitis during pregnancy.

Methods:

Multicenter study of women with uveitis under CZP during pregnancy and their neonates.

Results:

14 women (23 eyes); mean age 34.3±5.5 yrs (TABLE 1). Pattern of uveitis: 10 anterior, 2 posterior, 1 intermediate, 1 panuveitis. Uveitis was bilateral in 9 and chronic in 7. CZP was started before conception in 10 patients and after in 4. All patients obtained or maintained ocular remission throughout pregnancy (FIGURE). Prednisone was reduced from a mean dose of 21.7±19.7 mg/day to 4.1±3.8 mg/day at 6 months (p=0.03), leading to complete discontinuation in 4. 15 healthy infants were born. Only 1 woman presented a mild infection. No infections or malformations were found in neonates after a follow-up of 6 months. 6 infants were breastfed and all received scheduled vaccinations without complications (TABLE 2).

TABLE 1.AgeUnderlying diseaseImmunosuppressants before CZPCombined treatment134SpAMTX, AZA, ADAAZA237SpAMTX, AZA, IFX, ADA, GOLI339SpAAZA, ADAAZA446SpACyA, ETN, ADA, IFX, GOLI532SpASSZ, ADASSZ636SpAMTX, HCQ, ADA740SpAMTX, LFN, HCQ, IFX, ADA, GOLIHCQ831IdiopathicMTX, MMF, CyA, ADA933IdiopathicMTX, AZA, ADA, ETN1032RAMTXAZA1123Vogt-Koyanagi-HaradaAZA, ADAAZA1236Juvenil Idiopathic ArthritisADA1332Punctate inner choroidopathyADA1429BehcetCyA, IFX, ADA

Conclusion:

CZP seems to be effective and safe in female patients with uveitis during pregnancy and neonates.

References:

[1]Llorenç V et al. Certolizumab Pegol, a New Anti-TNF-α in the Armamentarium against Ocular Inflammation. Ocul Immunol Inflamm. 2016;24(2):167-72. doi: 10.3109/09273948.2014.967779

[2]Urruticoechea-Arana A et al. Efficacy and safety of biological therapy compared to synthetic immunomodulatory drugs or placebo in the treatment of Behçet’s disease associated uveitis: a systematic review. Rheumatol Int. 2019 Jan;39(1):47-58. doi: 10.1007/s00296-018-4193-z

[3]Martín-Varillas JL et al. Successful Optimization of Adalimumab Therapy in Refractory Uveitis Due to Behçet’s Disease Ophthalmology. 2018 Sep;125(9):1444-1451. doi: 10.1016/j.ophtha.2018.02.020

[4]Santos-Gómez M et al. The effect of biologic therapy different from infliximab or adalimumab in patients with refractory uveitis due to Behçet’s disease: results of a multicentre open-label study. Clin Exp Rheumatol. 2016. Sep-Oct;34(6 Suppl 102): S34-S40

[5]Calvo-Río V et al. Golimumab in refractory uveitis related to spondyloarthritis. Multicenter study of 15 patients.Semin Arthritis Rheum. 2016 Aug;46(1):95-101. doi: 10.1016/j.semarthrit.2016.03.002

Disclosure of Interests:

D. Prieto-Peña: None declared, Monica Calderón-Goercke: None declared, Alfredo Adan: None declared, Lillian Chamorro-López: None declared, Olga Maiz: None declared, JR De Dios-Jiménez Aberásturi: None declared, Raul Veroz Gonzalez: None declared, Soledad Blanco: None declared, José M Santos: None declared, Francisco Navarro: None declared, Adela Gallego: None declared, Senen González-Suárez: None declared, Arantxa Conesa: None declared, Andrea García-Valle: None declared, Miguel Cordero-Coma: None declared, Nieves Pardiñas-Barón: None declared, Rosalía Demetrio-Pablo: None declared, Vanesa Calvo-Río Grant/research support from: MSD and Roche, Speakers bureau: AbbVie, Lilly, Celgene, Grünenthal, UCB Pharma, Victor Manuel Mora-Cuesta: None declared, Santos Castañeda: None declared, J. Luis Hernández: None declared, Miguel A González-Gay Grant/research support from: Pfizer, Abbvie, MSD, Speakers bureau: Pfizer, Abbvie, MSD, Ricardo Blanco Grant/research support from: AbbVie, MSD, Roche, Consultant of: Abbvie, Eli Lilly, Pfizer, Roche, Bristol-Myers, Janssen, UCB Pharma and MSD, Speakers bureau: Abbvie, Eli Lilly, Pfizer, Roche, Bristol-Myers, Janssen, UCB Pharma. MSD

Identifying environmental drivers of benthic diatom diversity: the case of Mediterranean mountain ponds

This study aims at elucidating the environmental factors controlling benthic diatom diversity and uniqueness in Mediterranean mountain ponds. Samples of periphytic diatoms were collected in 45 ponds in Andalusia, south of Spain, and analysed by standard methods. Data analysis reveals that diatom diversity is mainly controlled by elevation and hydroperiod. Contrary to the usual findings in the literature, the highest scores on Shannon's diversity index were found in high-elevation temporary ponds, but this effect is hidden by lake clustering in the analysed dataset. Significant distance-decay similarity (DDS) trends were detected in the analysis of floristic composition among the samples, stressing the importance of spatial factors that may override the effect of other abiotic factors. These findings highlight the role of isolation and dispersal limitation in the configuration of the biogeographical patterns of benthic diatoms.

Large-scale geographical and environmental drivers of shallow lake diatom metacommunities across Europe

Disentangling the relative role of species sorting and dispersal limitation in biological communities has become one of the main issues for community ecologists and biogeographers. In this study, we analysed a data set of epiphytic diatoms comprising 34 lakes from six European countries. This data set covers a relatively large latitudinal gradient to elucidate which processes are affecting the distribution of diatom communities on a broad spatial extent. Our results show strong environmental effects on the composition of the diatom communities, while the spatial factor effects were weak, emphasising that compositional variation was mainly due to species turnover. Our data support information from the literature that local abiotic factors are the main predictors controlling the compositional variation of diatom assemblages in European shallow lakes. More specifically, changes in species composition were driven mainly by nutrient content in Northern Europe, whereas lakes located in Southern Europe were more affected by conductivity and lake depth. Our results solve pending questions in the spatial ecology of diatoms by proving that species turnover is stronger than nestedness at any spatial scale, and give support to the use of epiphytic diatoms as biological indicators for shallow lakes.

Taxonomía y morfología de Craticula gadorensis sp. nov. (Bacillariophyta, Stauroneidaceae)

Introducción y objetivos: Se describe la diatomea Craticula gadorensis sp. nov. a partir de muestras de algas epilíticas recogidas en una balsa ganadera de la Sierra de Gádor, en la provincia de Almería. M&M: Las muestras se tomaron y procesaron siguiendo los protocolos metodológicos para diatomeas. Los caracteres morfológicos y ultraestructurales de este nuevo taxón se describen e ilustran mediante imágenes de microscopía óptica y electrónica. Resultados: la nueva especie se caracteriza por presentar valvas elíptico-lanceoladas a rómbico-lanceoladas, con ápices ligeramente prolongados, subrostrados, con un área axial lineal, estrecha y un área central un poco dilatada, lineal-lanceolada. Conclusiones: La comparación morfológica con otras especies del género muestra que la combinación de caracteres de Craticula gadorensis (principalmente las dimensiones, la densidad de areolas y la forma del área central) es única.

Seasonal variation of biogas upgrading coupled with digestate treatment in an outdoors pilot scale algal-bacterial photobioreactor

The yearly variations of the quality of the upgraded biogas and the efficiency of digestate treatment were evaluated in an outdoors pilot scale high rate algal pond (HRAP) interconnected to an external absorption column (AC) via a conical settler. CO₂ concentrations in the upgraded biogas ranged from 0.7% in August to 11.9% in December, while a complete H₂S removal was achieved regardless of the operational month. CH₄ concentrations ranged from 85.2% in December to 97.9% in June, with a limited O₂ and N₂ stripping in the upgraded biogas mediated by the low recycling liquid/biogas ratio in the AC. Biomass productivity ranged from 0.0 g m^-2 d^-1 in winter to 22.5 g m^-2 d^-1 in summer. Finally, microalgae diversity was severely reduced throughout the year likely due to the increasing salinity in the cultivation broth of the HRAP induced by process operation in the absence of effluent.

Analysis of Gastric Physiology After Laparoscopic Sleeve Gastrectomy (LSG) With or Without Antral Preservation in Relation to Metabolic Response: a Randomised Study

INTRODUCTION

Laparoscopic sleeve gastrectomy is one of the most common techniques in bariatric surgery, but there is no consensus on the optimal distance from the pylorus to start the gastric transection. The aim of this study is to determine the differences in gastric emptying, gastric distension and metabolic response between two starting distances.

MATERIAL AND METHODS

This is a prospective randomised study of 60 patients (30 patients with the section at 3 cm and 30 patients at 8 cm from the pylorus). We calculate at 6 and 12 months from surgery gastric emptying by scintigraphy (T1/2 min), gastric volume by CT scan (cc) and metabolic response by blood sample analysis (glucose, HbA1c, insulin, HOMA-IR, GLP-1, GIP and C-peptide).

RESULTS

Gastric emptying increases the speed significantly in both groups but is greater in the 3-cm group (p < 0.05). Dividing groups into type 2 diabetic patients and non-diabetic patients, the speed in non-diabetic patients is significantly higher for the 3-cm group. Residual volume increases significantly in both groups, and there are no differences between them. One year after surgery, there are significant improvements in the hyperinsulinaemia in the patients of the 3-cm group with respect to the 8-cm group, but only in diabetic patients. No differences between groups are found regarding changes in GLP-1 or GIP.

CONCLUSIONS

Gastric emptying is faster in patients with antrum resection. The distance does not influence the gastric emptying of diabetic patients. Other mechanisms may explain metabolic response besides GLP-1 and its association with improvements in diabetes via gastric emptying.

Microsolvated complexes of ibuprofen as revealed by high-resolution rotational spectroscopy

Four conformers of microsolvated ibuprofen have been characterized using high-resolution microwave spectroscopy.

Evaluation of the dynamics of microalgae population structure and process performance during piggery wastewater treatment in algal-bacterial photobioreactors

The dynamics of microalgae population during piggery wastewater (PWW) treatment in four open photobioreactors operated at 27days of hydraulic retention time, and inoculated with Chlorella sp. (R1), Acutodesmus obliquus (R2), Oscillatoria sp. (R3) and in the absence of inoculum (R4), were evaluated for 6months. In addition, the algal-bacterial biomass concentration, removal of organic matter, nutrients and heavy metals were also assessed. The results revealed a high diversity and rapid variations in the structure of microalgae populations, Chlorella sp. being dominant in R4 throughout most of the operational period. Steady state average biomass concentration ranged from 2445-2610mg/L in R1-R3 to 3265mg/L in R4. No significant differences were recorded in the removal efficiencies (REs) of total organic carbon (86-87%), inorganic carbon (62-71%), total nitrogen (82-85%) and total phosphorous (90-92%). Finally, Zn-REs accounted for 26% in R3, 37% in R2, and 49% in R1 and R4.

Disentangling diatom species complexes: does morphometry suffice?

Accurate taxonomic resolution in light microscopy analyses of microalgae is essential to achieve high quality, comparable results in both floristic analyses and biomonitoring studies. A number of closely related diatom taxa have been detected to date co-occurring within benthic diatom assemblages, sharing many morphological, morphometrical and ecological characteristics. In this contribution, we analysed the hypothesis that, where a large sample size (number of individuals) is available, common morphometrical parameters (valve length, width and stria density) are sufficient to achieve a correct identification to the species level. We focused on some common diatom taxa belonging to the genus Gomphonema. More than 400 valves and frustules were photographed in valve view and measured using Fiji software. Several statistical tools (mixture and discriminant analysis, k-means clustering, classification trees, etc.) were explored to test whether mere morphometry, independently of other valve features, leads to correct identifications, when compared to identifications made by experts. In view of the results obtained, morphometry-based determination in diatom taxonomy is discouraged.

Comparative evaluation of piggery wastewater treatment in algal-bacterial photobioreactors under indoor and outdoor conditions

This work evaluated the performance of four open algal-bacterial photobioreactors operated at ≈26days of hydraulic retention time during the treatment of 10 (×10) and 20 (×20) times diluted piggery wastewater (PWW) under indoor (I) and outdoor (O) conditions for four months. The removal efficiencies (REs) of organic matter, nutrients and zinc from PWW, along with the dynamics of biomass concentration and structure of algal-bacterial population were assessed. The highest TOC-RE, TP-RE and Zn-RE (94±1%, 100% and 83±2%, respectively) were achieved indoors in ×10 PWW, while the highest TN-RE (72±8%) was recorded outdoors in ×10 PWW. Chlorella vulgaris was the dominant species regardless of the ambient conditions and PWW dilution. Finally, DGGE-sequencing of the bacterial community revealed the occurrence of four phyla, Proteobacteria being the dominant phylum with 15 out of the 23 most intense bands.

Exploring the effects of acid mine drainage on diatom teratology using geometric morphometry

Metal pollution of aquatic habitats is a major and persistent environmental problem. Acid mine drainage (AMD) affects lotic systems in numerous and interactive ways. In the present work, a mining area (Roșia Montană) was chosen as study site, and we focused on two aims: (i) to find the set of environmental predictors leading to the appearance of the abnormal diatom individuals in the study area and (ii) to assess the relationship between the degree of valve outline deformation and AMD-derived pollution. In this context, morphological differences between populations of Achnanthidium minutissimum and A. macrocephalum, including normal and abnormal individuals, were evidenced by means of valve shape analysis. Geometric morphometry managed to capture and discriminate normal and abnormal individuals. Multivariate analyses (NMDS, PLS) separated the four populations of the two species mentioned and revealed the main physico-chemical parameters that influenced valve deformation in this context, namely conductivity, Zn, and Cu. ANOSIM test evidenced the presence of statistically significant differences between normal and abnormal individuals within both chosen Achnanthidium taxa. In order to determine the relative contribution of each of the measured physico-chemical parameters in the observed valve outline deformations, a PLS was conducted, confirming the results of the NMDS. The presence of deformed individuals in the study area can be attributed to the fact that the diatom communities were strongly affected by AMD released from old mining works and waste rock deposits.

PyroTyping, a novel pyrosequencing-based assay for Mycobacterium tuberculosis genotyping

We developed a novel method, PyroTyping, for discrimination of Mycobacterium tuberculosis isolates combining pyrosequencing and IS6110 polymorphism. A total of 100 isolates were analysed with IS6110-restriction fragment length polymorphism (RFLP), spoligotyping, mycobacterial interspersed repetitive units - variable number tandem repeats (MIRU-VNTR), and PyroTyping. PyroTyping results regarding clustering or discrimination of the isolates were highly concordant with the other typing methods performed. PyroTyping is more rapid than RFLP and presents the same discriminatory power, thus, it may be useful for taking timely decisions for tuberculosis control.

Simultaneous biogas upgrading and centrate treatment in an outdoors pilot scale high rate algal pond

The bioconversion of biogas to biomethane coupled to centrate treatment was evaluated in an outdoors pilot scale high rate algal pond interconnected to an external CO₂-H₂S absorption column (AC) via settled broth recirculation. CO₂-removal efficiencies ranged from 50 to 95% depending on the alkalinity of the cultivation broth and environmental conditions, while a complete H₂S removal was achieved regardless of the operational conditions. A maximum CH₄ concentration of 94% with a limited O₂ and N₂ stripping was recorded in the upgraded biogas at recycling liquid/biogas ratios in the AC of 1 and 2. Process operation at a constant biomass productivity of 15gm^-2d^-1 and the minimization of effluent generation supported high carbon and nutrient recoveries in the harvested biomass (C=66±8%, N=54±18%, P≈100% and S=16±3%). Finally, a low diversity in the structure of the microalgae population was promoted by the environmental and operational conditions imposed.

Updating controlled vocabularies by analysing query logs

Purpose

– Controlled vocabularies play an important role in information retrieval. Numerous studies have shown that conceptual searches based on vocabularies are more effective than keyword searches, at least in certain contexts. Consequently, new ways must be found to improve controlled vocabularies. The purpose of this paper is to present a semi-automatic model for updating controlled vocabularies through the use of a text corpus and the analysis of query logs.

Design/methodology/approach

– An experimental development is presented in which, first, the suitability of a controlled vocabulary to a text corpus is examined. The keywords entered by users to access the text corpus are then compared with the descriptors used to index it. Finally, both the query logs and text corpus are processed to obtain a set of candidate terms to update the controlled vocabulary.

Findings

– This paper describes a model applicable both in the context of the text corpus of an online academic journal and to repositories and intranets. The model is able to: first, identify the queries that led users from a search engine to a relevant document; and second, process these queries to identify candidate terms for inclusion in a controlled vocabulary.

Research limitations/implications

– Ideally, the model should be used in controlled web environments, such as repositories, intranets or academic journals.

Social implications

– The proposed model directly improves the indexing process by facilitating the maintenance and updating of controlled vocabularies. It so doing, it helps to optimise access to information.

Originality/value

– The proposed model takes into account the perspective of users by mining queries in order to propose candidate terms for inclusion in a controlled vocabulary.

Evaluation of wastewater treatment in a novel anoxic-aerobic algal-bacterial photobioreactor with biomass recycling through carbon and nitrogen mass balances

Algal-bacterial symbiosis, implemented in an innovative anoxic-aerobic photobioreactor configuration with biomass recycling, supported an efficient removal of total organic carbon (86-90%), inorganic carbon (57-98%) and total nitrogen (68-79%) during synthetic wastewater treatment at a hydraulic and sludge retention times of 2 days and 20 days, respectively. The availability of inorganic carbon in the photobioreactor, determined by its supply in the wastewater and microalgae activity, governed the extent of nitrogen removal by assimilation or nitrification-denitrification. Unexpectedly, nitrate production was negligible despite the high dissolved oxygen concentrations, denitrification being only based on nitrite reduction. Biomass recycling resulted in the enrichment of rapidly settling algal flocs, which supported effluent total suspended solid concentrations below the European Union maximum discharge limits. Finally, the maximum nitrous oxide emissions recorded were far below the emission factors reported for wastewater treatment plants, confirming the environmental sustainability of this innovative photobioreactor in terms of global warming impact.

A semi-automatic indexing system based on embedded information in HTML documents

Purpose

– The purpose of this paper is to describe and evaluate the tool DigiDoc MetaEdit which allows the semi-automatic indexing of HTML documents. The tool works by identifying and suggesting keywords from a thesaurus according to the embedded information in HTML documents. This enables the parameterization of keyword assignment based on how frequently the terms appear in the document, the relevance of their position, and the combination of both.

Design/methodology/approach

– In order to evaluate the efficiency of the indexing tool, the descriptors/keywords suggested by the indexing tool are compared to the keywords which have been indexed manually by human experts. To make this comparison a corpus of HTML documents are randomly selected from a journal devoted to Library and Information Science.

Findings

– The results of the evaluation show that there: first, is close to a 50 per cent match or overlap between the two indexing systems, however, if you take into consideration the related terms and the narrow terms the matches can reach 73 per cent; and second, the first terms identified by the tool are the most relevant.

Originality/value

– The tool presented identifies the most important keywords in an HTML document based on the embedded information in HTML documents. Nowadays, representing the contents of documents with keywords is an essential practice in areas such as information retrieval and e-commerce.

Influence of biogas flow rate on biomass composition during the optimization of biogas upgrading in microalgal-bacterial processes

The influence of biogas flow rate (0, 0.3, 0.6, and 1.2 m(3) m(-2) h(-1)) on the elemental and macromolecular composition of the algal-bacterial biomass produced from biogas upgrading in a 180 L photobioreactor interconnected to a 2.5 L external bubbled absorption column was investigated using diluted anaerobically digested vinasse as cultivation medium. The influence of the external liquid recirculation/biogas ratio (0.5 < L/G < 67) on the removal of CO2 and H2S, and on the concentrations of O2 and N2 in the upgraded biogas, was also evaluated. A L/G ratio of 10 was considered optimum to support CO2 and H2S removals of 80% and 100%, respectively, at all biogas flow rates tested. Biomass productivity increased at increasing biogas flow rate, with a maximum of 12 ± 1 g m(-2) d(-1) at 1.2 m(3) m(-2) h(-1), while the C, N, and P biomass content remained constant at 49 ± 2%, 9 ± 0%, and 1 ± 0%, respectively, over the 175 days of experimentation. The high carbohydrate contents (60-76%), inversely correlated to biogas flow rates, would allow the production of ≈100 L of ethanol per 1000 m(3) of biogas upgraded under a biorefinery process approach.

The Duero Diatom Index (DDI) for river water quality assessment in NW Spain: design and validation

Diatom indices developed in certain geographic regions are frequently used elsewhere, despite the strong evidence that such metrics are less useful when applied in regions other than that where species-environment relationships were originally assessed, showing that species have particular autoecological requirements in different geographic areas. The goal of this study was to develop a new metric, the Duero Diatom Index (DDI), aimed at monitoring water quality in Duero basin watercourses (NW Spain). In summer 2008 and 2009, a total of 355 epilithic diatom samples were collected following standard protocols. The 2008 samples were used to develop the DDI, whereas the samples collected during 2009 were used in the index testing. Weighted averages method was used to derive the autoecological profiles of diatoms with respect to pH, conductivity, biological oxygen demand, ammonia, nitrates, and phosphates. The optimum and tolerance values for the measured environmental variables were determined for 137 taxa with abundances and frequencies of occurrence above 1%, and subsequent trophic indicator and sensitivity values were defined for the DDI. The correlation between the observed and the diatom-inferred nutrient concentrations was highest for phosphates (ρ (S) = 0.72). Significant statistical relationship were observed between DDI values and the chemistry-based General Quality Index values (p = 0.006) and the specific pollution index (SPI) diatom metric (p = 0.04). DDI has demonstrated a better correlation with water chemistry than SPI diatom metric.

High-Resolution Rotational Spectroscopy of a Cyclic Ether

The conformational landscape of crown ethers has constituted a central topic in the development of host-guest supramolecular chemistry. We report a high-resolution rotational study of a crown ether, 1,4,7,10,13-pentaoxacyclopentadecane (15-crown-5), by means of molecular beam Fourier transform microwave spectroscopy. The considerable size and the broad range of conformations allowed by the flexibility of the cyclic backbone of this ether pose important challenges to spectroscopy approaches. In this investigation, three stable rotamers of the 15-crown-5 ether have been identified and characterized through their rotational constants and centrifugal distortion coefficients. Ab initio quantum calculations at the MP2 level predict these conformers as the most stable ones for the title system and reproduce accurately their distinct structural features. The results pave the ground for an extensive survey of the conformational landscape of the 15-crown-5 and related cyclic ethers in the near term.

Utility of the rapid antigen detection BinaxNOW Influenza A&B test for detection of novel influenza A (H1N1) virus

Nasopharyngeal aspirates, collected during outbreaks, of the novel influenza A (H1N1) virus in Barcelona, were used to compare the accuracy of a rapid antigen-based test (Binax) with the real-time RT-PCR assay developed by the CDC. The sensitivity, specificity and positive predictive value of the rapid test are higher in patients less than 18 years old and during the acute stage of the epidemic than in adult patients.

Mechanisms for parasites removal in a waste stabilisation pond

A waste stabilisation pond (WSP) system formed by two anaerobic ponds, a facultative pond and a maturation pond was studied from December 2003 to September 2004 in north-western Spain in order to evaluate its efficiency in the removal of faecal indicator bacteria (total coliforms, Escherichia coli, faecal streptococci), coliphages, helminth eggs and protozoan (oo)cysts (Cryptosporidium and Giardia). Furthermore, sediment samples were collected from the bottom of the ponds to assess the settling rates and thus determine the main pathogen removal mechanisms in the WSPs system. The overall removal ranged from 1.4 log units for coliphages in the cold period to 5.0 log units for E. coli in the hot period. Cryptosporidium oocysts were reduced by an average of 96%, Giardia cysts by 98% and helminth eggs by 100%. The anaerobic ponds showed significantly higher surface removal rates (4.6, 5.2 and 3.7 log (oo)cysts/eggs removed m(-2) day(-1), respectively) than facultative and maturation ponds. Sunlight and water physicochemical conditions were the main factors influencing C. parvum oocysts removal both in the anaerobic and maturation ponds, whereas other factors like predation or natural mortality were more important in the facultative pond. Sedimentation, the most commonly proposed mechanism for cyst removal had, therefore, a negligible influence in the studied ponds.

Usefulness of two new methods for diagnosing metapneumovirus infections in children

Human metapneumovirus (hMPV) is associated with acute respiratory tract infections, mainly in paediatric patients. The aim of this study was to evaluate the usefulness of two new commercial techniques available for the detection of hMPV in clinical samples from children: an enzyme immunoassay, hMPV EIA (Biotrin International Ltd), and a molecular assay, real-time RT-PCR (Pro hMPV Real Time Assay Kit; Prodesse). A total of 184 nasopharyngeal aspirate specimens from 173 children aged less than 5 years who were hospitalized with acute wheezing were analysed. Respiratory syncytial virus was detected in 27% of the samples, followed by influenza A virus (6%), parainfluenza virus (PIV)3 (2.2%), adenovirus (2%), PIV1 (1.1%), PIV2 (1.1%), and influenza B virus (0.5%). The presence of hMPV was tested in all samples, using the real-time RT-PCR and EIA. Real-time RT-PCR detected 13 hMPV-positive samples (8%), and EIA detected 17 (9.3%). When the EIA results were compared with those of real-time RT-PCR for the detection of hMPV, a good correlation was found (94%). A relatively low co-infection rate (15%) was observed in our patients. RT-PCR and EIA provide robust methods for the diagnosis of hMPV infection in children.