A Global review of cumulative effects assessments of disturbances on forest ecosystems

This paper reviews trends in the academic literature on cumulative effects assessment (CEA) of disturbance on forest ecosystems to advance research in the broader context of impact assessments. Disturbance is any distinct spatiotemporal event that disrupts the structure and composition of an ecosystem affecting resource availability. We developed a Python package to automate search term selection, write search strategies, reduce bias and improve the efficient and effective selection of articles from academic databases and grey literature. We identified 148 peer-reviewed literature published between 1986 and 2022 and conducted an inductive and deductive thematic analysis of the results. Our findings revealed that CEA studies are concentrated in the global north, with most publications from authors affiliated with government agencies in the USA and Canada. Methodological and analytical approaches are less interdisciplinary but mainly quantitative and expert-driven, involving modeling the impacts of disturbances on biophysical valued components. Furthermore, the assessment of socioeconomic valued components, including the effects of disturbance on Indigenous wellbeing connected to forests, has received less attention. Even though there is a high preference for regional assessment, challenges with data access, quality, and analysis, especially baseline data over long periods, are hampering effective CEA. Few articles examined CEA - policy/management nexus. Of the few studies, challenges such as the inadequate implementation of CEA mitigation strategies due to policy drawbacks and resource constraints, the high cost of monitoring multiple indicators, and poor connections between scenarios/modeling and management actions were paramount. Future CEA research is needed to broaden our understanding of how multiple disturbance affects forests in the global south and coupled social and ecological systems and their implications for sustainable forest management.

Two Lotus japonicus symbiosis mutants impaired at distinct steps of arbuscule development

Arbuscular mycorrhiza (AM) fungi form nutrient-acquiring symbioses with the majority of higher plants. Nutrient exchange occurs via arbuscules, highly branched hyphal structures that are formed within root cortical cells. With a view to identifying host genes involved in AM development, we isolated Lotus japonicus AM-defective mutants via a microscopic screen of an ethyl methanesulfonate-mutagenized population. A standardized mapping procedure was developed that facilitated positioning of the defective loci on the genetic map of L. japonicus, and, in five cases, allowed identification of mutants of known symbiotic genes. Two additional mutants representing independent loci did not form mature arbuscules during symbiosis with two divergent AM fungal species, but exhibited signs of premature arbuscule arrest or senescence. Marker gene expression patterns indicated that the two mutants are affected in distinct steps of arbuscule development. Both mutants formed wild-type-like root nodules upon inoculation with Mesorhizobium loti, indicating that the mutated loci are essential during AM but not during root nodule symbiosis.

Lotus japonicus symRK-14 uncouples the cortical and epidermal symbiotic program

SYMRK is a leucine-rich-repeat (LRR)-receptor kinase that mediates intracellular symbioses of legumes with rhizobia and arbuscular mycorrhizal fungi. It participates in signalling events that lead to epidermal calcium spiking, an early cellular response that is typically considered as central for intracellular accommodation and nodule organogenesis. Here, we describe the Lotus japonicus symRK-14 mutation that alters a conserved GDPC amino-acid sequence in the SYMRK extracellular domain. Normal infection of the epidermis by fungal or bacterial symbionts was aborted in symRK-14. Likewise, epidermal responses of symRK-14 to bacterial signalling, including calcium spiking, NIN gene expression and infection thread formation, were significantly reduced. In contrast, no major negative effects on the formation of nodule primordia and cortical infection were detected. Cumulatively, our data show that the symRK-14 mutation uncouples the epidermal and cortical symbiotic program, while indicating that the SYMRK extracellular domain participates in transduction of non-equivalent signalling events. The GDPC sequence was found to be highly conserved in LRR-receptor kinases in legumes and non-legumes, including the evolutionarily distant bryophytes. Conservation of the GDPC sequence in nearly one-fourth of LRR-receptor-like kinases in the genome of Arabidopsis thaliana suggests, however, that this sequence might also play an important non-symbiotic function in this plant.

Differential and chaotic calcium signatures in the symbiosis signaling pathway of legumes

Understanding how the cell uses a limited set of proteins to transduce very different signals into specific cellular responses is a central goal of cell biology and signal transduction disciplines. Although multifunctionality in signal transduction is widespread, the mechanisms that allow differential modes of signaling in multifunctional signaling pathways are not well defined. In legume plants, a common symbiosis signaling pathway composed of at least seven proteins mediates infection by both mycorrhizal fungi and rhizobial bacteria. Here we show that the symbiosis signaling pathway in legumes differentially transduces both bacterial and fungal signals (inputs) to generate alternative calcium responses (outputs). We show that these differential calcium responses are dependent on the same proteins, DMI1 and DMI2, for their activation, indicating an inherent flexibility in this signaling pathway. By using Lyapunov and other mathematical analyses, we discovered that both bacterial-induced and fungal-induced calcium responses are chaotic in nature. Chaotic systems require minimal energy to produce a wide spectrum of outputs in response to marginally different inputs. The flexibility provided by chaotic systems is consistent with the need to transduce two different signals, one from rhizobial bacteria and one from mycorrhizal fungi, by using common components of a single signaling pathway.

Cytokinin: secret agent of symbiosis

The symbiotic interaction between Rhizobium bacteria and legumes leads to the induction of a new root organ: the nitrogen-fixing nodule. Recent findings have uncovered that cytokinin is instrumental in this developmental process, but they also suggest a broader role for cytokinin in mediating rhizobial infection. In this opinion article, we propose that cytokinin is the key differentiation signal for nodule organogenesis. Furthermore, we discuss a model in which cytokinin might also influence bacterial infection by controlling the expression of NIN (Nodule Inception) and other transcriptional regulators through mechanisms operating both locally and systemically.

Proteases in plant root symbiosis

Proteases catalyze the hydrolysis of peptide bonds in proteins/peptides inside or outside of cells. They play important roles in development and responses to environmental stresses. In arbuscular mycorrhiza (AM), symbiosis-induced protease genes were found by large-scale transcriptome analyses in different plant species, suggesting that proteolytic processes are implicated in AM. In legumes, some of these were also transcriptionally activated during the root nodule symbiosis. However, the precise function of these symbiosis-induced proteases remains unknown. Here we present a compilation of the symbiosis-induced proteases identified so far and discuss their possible roles in symbiosis.

Partner communication in the arbuscular mycorrhizal interaction

During 400 million years of genome–genome interaction, plants and arbuscular mycorrhizal (AM) fungi have become highly interdependent, both ecologically and physiologically. As a result, the differentiation of a functional mycorrhiza is a multistep process requiring the active participation of both partners. During the presymbiotic stage of the AM interaction, some active molecules present in root exudates rapidly induce several fungal genes, in addition to stimulating important cellular and metabolic functions in the fungus, such as mitochondrial biogenesis and respiration. As a result of this activation, the fungus can use its lipidic reserves and reach further developmental stages. Subsequently, the fungus produces factors that induce new gene expression in roots. The fact that the partners of the AM symbiosis exchange such "pheromonal" active molecules during the presymbiotic stage of their interaction suggests the existence of other cross-signaling molecules during the symbiotic stage. These later signals might be involved in activating fungal fatty acid synthesis and sugar uptake or be responsible for specific plant gene induction. Now the challenge is to characterize the chemical nature and the exact role of these fungal and plant regulators in the AM symbiosis.Key words: arbuscular mycorrhizal symbiosis, signaling, root exudates, Myc factor, respiration, lipid metabolism.

A diffusible factor from arbuscular mycorrhizal fungi induces symbiosis-specific MtENOD11 expression in roots of Medicago truncatula

Using dual cultures of arbuscular mycorrhizal (AM) fungi and Medicago truncatula separated by a physical barrier, we demonstrate that hyphae from germinating spores produce a diffusible factor that is perceived by roots in the absence of direct physical contact. This AM factor elicits expression of the Nod factor-inducible gene MtENOD11, visualized using a pMtENOD11-gusA reporter. Transgene induction occurs primarily in the root cortex, with expression stretching from the zone of root hair emergence to the region of mature root hairs. All AM fungi tested (Gigaspora rosea, Gigaspora gigantea, Gigaspora margarita, and Glomus intraradices) elicit a similar response, whereas pathogenic fungi such as Phythophthora medicaginis, Phoma medicaginis var pinodella and Fusarium solani f.sp. phaseoli do not, suggesting that the observed root response is specific to AM fungi. Finally, pMtENOD11-gusA induction in response to the diffusible AM fungal factor is also observed with all three M. truncatula Nod(-)/Myc(-) mutants (dmi1, dmi2, and dmi3), whereas the same mutants are blocked in their response to Nod factor. This positive response of the Nod(-)/Myc(-) mutants to the diffusible AM fungal factor and the different cellular localization of pMtENOD11-gusA expression in response to Nod factor versus AM factor suggest that signal transduction occurs via different pathways and that expression of MtENOD11 is differently regulated by the two diffusible factors.

Copper release from chemical root-control baskets in hardwood tree production

The City of Montreal, Canada, evaluated the environmental impact and usefulness of in-ground copper (Cu)-treated baskets in controlling root growth of hardwood trees in nursery culture. Using baskets planted with 5-yr-old Norway maple (Acer platanoides L.) trees, the amount and temporal pattern of Cu release from the basket surface into soil was determined for two copper formulations: Cu metal powder and Cu(OH)2. Release of both Cu formulations from the basket surface decreased exponentially over time, with Cu concentration at the basket surface dropping to 2% of the initial Cu applied by the end of the second field season. Total Cu content increased significantly in the soil around the baskets (from 7 to 28 mg Cu kg(-1) soil) and in the baskets (from 7 to 50-70 mg Cu kg(-1) soil) over the two years of the study. Three levels of phosphorus application (33, 66, and 100% of the regular nursery rate of 465 kg ha(-1) yr(-1)) did not affect release of Cu from the basket surface. The release of Cu metal at 28 and 105 d in the field was significantly increased by inoculation with the symbiotic arbuscular mycorrhizal fungus (AMF) Glomus intraradices Schenck & Smith; however, AMF inoculation had no affect on Cu(OH)2 release. Trees grown in Cu-treated baskets and inoculated with G. intraradices had similar colonization to non-inoculated trees, suggesting that inoculation was not very effective and that AMF inoculum was already present in the root ball of the trees at planting. After two years, copper basket-grown trees had significantly less root colonization than isolated control trees growing in the open field. This strongly suggests that conditions inside the baskets were not favorable to AMF.

The fate and mobility of copper from chemical root control barriers in soil and leachate

The use of copper (Cu)-treated containers is common horticultural practice, though the movement of this Cu to soil and water remains unexplored. Therefore, the fate and quantity of Cu migrating from the fabric of 10 in-ground Cu(OH)(2)-treated root control baskets was studied in the field. After 3 months, 29% of the initial Cu remained on the basket fabric, 71% of the Cu had been deposited in the soil, 0.2% was in the leaves and roots of the maple shrub (Acer ginnala) growing in the basket, and 0.004% was recovered in leachate from the baskets. Soluble Cu concentrations in leachate varied between 0.5 and 8.5 mg l(-1) and exceeded 1 mg l(-1) in 60% of samples. Mycorrhizal inoculation significantly increased the Cu concentration in A. ginnala leaves. Baskets containing no tree had significantly higher soil Cu and leached significantly more Cu over the 3-month period than treed baskets.