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Kusakunniran W, Imaromkul T, Mongkolluksamee S, Thongkanchorn K, Ritthipravat P, Tuakta P, Benjapornlert P. Deep Upscale U-Net for automatic tongue segmentation. Med Biol Eng Comput 2024; 62:1751-1762. [PMID: 38372910 DOI: 10.1007/s11517-024-03051-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Accepted: 02/13/2024] [Indexed: 02/20/2024]
Abstract
In a treatment or diagnosis related to oral health conditions such as oral cancer and oropharyngeal cancer, an investigation of tongue's movements is a major part. In an automatic measurement of such movement, it must first start with a task of tongue segmentation. This paper proposes a solution of tongue segmentation based on a decoder-encoder CNN-based structure i.e., U-Net. However, it could suffer from a problem of feature loss in deep layers. This paper proposes a Deep Upscale U-Net (DU-UNET). An additional up-sampling of the feature map from a contracting path is concatenated to an upper layer of an expansive path, based on an original U-Net structure. The segmentation model is constructed by training DU-UNET on the two publicly available datasets, and transferred to the self-collected dataset of tongue images with five tongue postures which were recorded at a far distance from a camera under a real-world scenario. The proposed DU-UNET outperforms the other existing methods in our literature reviews, with accuracy of 99.2%, mean IoU of 97.8%, Dice score of 96.8%, and Jaccard score of 96.8%.
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Affiliation(s)
- Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, 73170, Nakhon Pathom, Thailand.
| | - Thanandon Imaromkul
- Faculty of Information and Communication Technology, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, 73170, Nakhon Pathom, Thailand
| | - Sophon Mongkolluksamee
- Department of Computer Science, Faculty of Science, Srinakharinwirot University, 114 Sukhumvit 23, 10110, Bangkok, Thailand
| | - Kittikhun Thongkanchorn
- Faculty of Information and Communication Technology, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, 73170, Nakhon Pathom, Thailand
| | - Panrasee Ritthipravat
- Department of Biomedical Engineering, Faculty of Engineering, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, 73170, Nakhon Pathom, Thailand.
| | - Pimchanok Tuakta
- Department of Rehabilitation Medicine, Faculty of Medicine Ramathibodi Hospital, Mahidol University, 270 Rama 6 Road, 10400, Bangkok, Thailand
| | - Paitoon Benjapornlert
- Department of Rehabilitation Medicine, Faculty of Medicine Ramathibodi Hospital, Mahidol University, 270 Rama 6 Road, 10400, Bangkok, Thailand
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Chaikangwan I, Yodrabum N, Kusakunniran W, Tachavijijaru R, Aojanepong C. Author Correction: Utilization of images and three-dimensional custom-made nostril retainer fabricate for patients with cleft lip and cleft lip nose deformities at Siriraj Hospital: preliminary phase. Sci Rep 2024; 14:3632. [PMID: 38351119 PMCID: PMC10864341 DOI: 10.1038/s41598-024-54022-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2024] Open
Affiliation(s)
- Irin Chaikangwan
- Division of Plastic and Reconstructive Surgery, Department of Surgery, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand
| | - Nutcha Yodrabum
- Division of Plastic and Reconstructive Surgery, Department of Surgery, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Rachata Tachavijijaru
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Chongdee Aojanepong
- Division of Plastic and Reconstructive Surgery, Department of Surgery, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
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Praha N, Sriyuktasuth A, Puwarawuttipanit W, Chuengsaman P, Kusakunniran W. Factors Influencing Telehealth Service Use and Health Outcomes in Patients Undergoing Continuous Ambulatory Peritoneal Dialysis: Cross-Sectional Study. J Med Internet Res 2023; 25:e48623. [PMID: 38051557 PMCID: PMC10731559 DOI: 10.2196/48623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 10/11/2023] [Accepted: 10/31/2023] [Indexed: 12/07/2023] Open
Abstract
BACKGROUND Several studies have demonstrated the efficacy and user acceptance of telehealth in managing patients with chronic conditions, including continuous ambulatory peritoneal dialysis (CAPD). However, the rates of telehealth service use in various patient groups have been low and have declined over time, which may affect important health outcomes. Telehealth service use in patients undergoing CAPD has been recognized as a key challenge that needs to be examined further. OBJECTIVE This study aimed to explore the rates of telehealth service use over 4 months, identify factors influencing its use, and examine the relationship between telehealth service use and health outcomes in Thai people undergoing CAPD. METHODS This cross-sectional study, which was a part of a pragmatic randomized controlled trial study, was conducted at a dialysis center in Bangkok, Thailand. The study included patients who were undergoing CAPD. These patients were randomly enrolled in the intervention group to receive telehealth service and additional standard care for 4 months. Data were collected using self-reported questionnaires, including a demographic form, Functional, Communicative, and Critical Health Literacy Scale, Perceived Usefulness Questionnaire, Brief Illness Perception Questionnaire, Patient-Doctor Relationship Questionnaire, and Kidney Disease Quality of Life 36 Questionnaire. Additionally, Google Analytics was used to obtain data on the actual use of the telehealth service. These data were analyzed using descriptive statistics, repeated-measures ANOVA, and regression analyses. RESULTS A total of 159 patients were included in this study. The mean rate of telehealth service use throughout the period of 4 months was 62.06 (SD 49.71) times. The rate of telehealth service use was the highest in the first month (mean 23.48, SD 16.28 times) and the lowest in the third month (mean 11.09, SD 11.48 times). Independent variables explained 27.6% of the sample variances in telehealth service use. Older age (β=.221; P=.002), higher perceived usefulness (β=.414; P<.001), unemployment (β=-.155; P=.03), and positive illness perception (β=-.205; P=.004) were associated with a significantly higher rate of telehealth service use. Regarding the relationship between telehealth service use and health outcomes, higher rates of telehealth service use were linked to better quality of life (β=.241; P=.002) and lower peritonitis (odds ratio 0.980, 95% CI 0.962-0.997; P=.03). CONCLUSIONS This study provides valuable insights into factors impacting telehealth service use, which in turn affect health outcomes in patients undergoing CAPD.
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Affiliation(s)
- Nattaya Praha
- Faculty of Nursing, Mahidol University, Bangkok, Thailand
| | | | | | | | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
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Chaikangwan I, Yodrabum N, Kusakunniran W, Tachavijijaru R, Aojanepong C. Utilization of images and three-dimensional custom-made nostril retainer fabricate for patients with cleft lip and cleft lip nose deformities at Siriraj Hospital: preliminary phase. Sci Rep 2023; 13:19109. [PMID: 37925587 PMCID: PMC10625571 DOI: 10.1038/s41598-023-46327-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 10/30/2023] [Indexed: 11/06/2023] Open
Abstract
A prospective study utilizing image analysis to assess nostril openings in post-operative patients with cleft lip and cleft lip nose deformities. This preliminary study seeks to employ two-dimensional (2D) images to fabricate a custom-made nostril retainer. This study was performed at Faculty of Medicine, Siriraj Hospital, Mahidol University, Thailand. This study included 30 healthy volunteers and 15 patients with cleft lip and cleft lip nose deformities. The nostril opening width and height for all participants were measured, and photographs were taken. An image analysis application was used to fabricate a three-dimensional (3D) custom-made nostril retainer. The mean differences between the direct measurements of the nostril aperture and the measurements obtained through the program did not exceed 2 mm in terms of nostril height, width, or columella. Two-dimensional photographs can be used to create a custom-made, three-dimensional nostril retainer. This retainer allows post-operative patients to maintain their nares without needing to visit the hospital, thereby reducing the cost of care.
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Affiliation(s)
- Irin Chaikangwan
- Division of Plastic and Reconstructive Surgery, Department of Surgery, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand
| | - Nutcha Yodrabum
- Division of Plastic and Reconstructive Surgery, Department of Surgery, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Rachata Tachavijijaru
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Chongdee Aojanepong
- Division of Plastic and Reconstructive Surgery, Department of Surgery, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
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Sriyuktasuth, A, Chuengsaman P, Kusakunniran W, Khurat A, Rattana-umpa N. Telehealth Service for Patients Receiving Continuous Ambulatory Peritoneal Dialysis: A Pilot Study. Siriraj Med J 2023. [DOI: 10.33192/smj.v75i1.260529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Objective: This study aimed to assess the feasibility and acceptability of delivering a telehealth intervention, called PD Telehealth, for improving health outcomes among Thai patients receiving continuous ambulatory peritoneal dialysis (CAPD).Materials and Methods: This pilot study enrolled 104 patients receiving CAPD, who were randomly classified into two groups: PD Telehealth group (PD Telehealth service plus usual care; n = 52) and usual care group (usual care only; n = 52). The 6-month telehealth service was provided to participants to deliver self-management support and telemonitoring while they received home-based treatment. Further, the repeated measures mixed analysis of variance test was used to assess health outcomes at baseline, 3 months, and 6 months. Additionally, feasibility and acceptability were assessed.Results: Notably, the measured baseline characteristics of the two groups were not different. Regarding quality of life, a significant interaction effect was observed on two domains of the 36-Item Short Form Survey-general health (p = 0.002) and reported health transition (p = 0.018). However, self-management and clinical outcomes did not differ significantly between the two groups over 6 months. The PD Telehealth group demonstrated high acceptability and feasibility of the application.Conclusion: The PD Telehealth service has been demonstrated to be feasible and acceptable for providing care to patients receiving CAPD. However, there were no significant differences in the main outcomes of the study. Further research studies involving a larger and more diverse sample population and conducted over a longer period are needed.
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Kusakunniran W, Karnjanapreechakorn S, Choopong P, Siriapisith T, Tesavibul N, Phasukkijwatana N, Prakhunhungsit S, Boonsopon S. Detecting and staging diabetic retinopathy in retinal images using multi-branch CNN. ACI 2022. [DOI: 10.1108/aci-06-2022-0150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
PurposeThis paper aims to propose a solution for detecting and grading diabetic retinopathy (DR) in retinal images using a convolutional neural network (CNN)-based approach. It could classify input retinal images into a normal class or an abnormal class, which would be further split into four stages of abnormalities automatically.Design/methodology/approachThe proposed solution is developed based on a newly proposed CNN architecture, namely, DeepRoot. It consists of one main branch, which is connected by two side branches. The main branch is responsible for the primary feature extractor of both high-level and low-level features of retinal images. Then, the side branches further extract more complex and detailed features from the features outputted from the main branch. They are designed to capture details of small traces of DR in retinal images, using modified zoom-in/zoom-out and attention layers.FindingsThe proposed method is trained, validated and tested on the Kaggle dataset. The regularization of the trained model is evaluated using unseen data samples, which were self-collected from a real scenario from a hospital. It achieves a promising performance with a sensitivity of 98.18% under the two classes scenario.Originality/valueThe new CNN-based architecture (i.e. DeepRoot) is introduced with the concept of a multi-branch network. It could assist in solving a problem of an unbalanced dataset, especially when there are common characteristics across different classes (i.e. four stages of DR). Different classes could be outputted at different depths of the network.
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Chotikkakamthorn K, Ritthipravat P, Kusakunniran W, Tuakta P, Benjapornlert P. A lightweight deep learning approach to mouth segmentation in color images. ACI 2022. [DOI: 10.1108/aci-08-2022-0225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
PurposeMouth segmentation is one of the challenging tasks of development in lip reading applications due to illumination, low chromatic contrast and complex mouth appearance. Recently, deep learning methods effectively solved mouth segmentation problems with state-of-the-art performances. This study presents a modified Mobile DeepLabV3 based technique with a comprehensive evaluation based on mouth datasets.Design/methodology/approachThis paper presents a novel approach to mouth segmentation by Mobile DeepLabV3 technique with integrating decode and auxiliary heads. Extensive data augmentation, online hard example mining (OHEM) and transfer learning have been applied. CelebAMask-HQ and the mouth dataset from 15 healthy subjects in the department of rehabilitation medicine, Ramathibodi hospital, are used in validation for mouth segmentation performance.FindingsExtensive data augmentation, OHEM and transfer learning had been performed in this study. This technique achieved better performance on CelebAMask-HQ than existing segmentation techniques with a mean Jaccard similarity coefficient (JSC), mean classification accuracy and mean Dice similarity coefficient (DSC) of 0.8640, 93.34% and 0.9267, respectively. This technique also achieved better performance on the mouth dataset with a mean JSC, mean classification accuracy and mean DSC of 0.8834, 94.87% and 0.9367, respectively. The proposed technique achieved inference time usage per image of 48.12 ms.Originality/valueThe modified Mobile DeepLabV3 technique was developed with extensive data augmentation, OHEM and transfer learning. This technique gained better mouth segmentation performance than existing techniques. This makes it suitable for implementation in further lip-reading applications.
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Siriapisith T, Kusakunniran W, Haddawy P. A retrospective study of 3D deep learning approach incorporating coordinate information to improve the segmentation of pre- and post-operative abdominal aortic aneurysm. PeerJ Comput Sci 2022; 8:e1033. [PMID: 35875647 PMCID: PMC9299237 DOI: 10.7717/peerj-cs.1033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Accepted: 06/20/2022] [Indexed: 06/15/2023]
Abstract
Abdominal aortic aneurysm (AAA) is one of the most common diseases worldwide. 3D segmentation of AAA provides useful information for surgical decisions and follow-up treatment. However, existing segmentation methods are time consuming and not practical in routine use. In this article, the segmentation task will be addressed automatically using a deep learning based approach which has been proved to successfully solve several medical imaging problems with excellent performances. This article therefore proposes a new solution of AAA segmentation using deep learning in a type of 3D convolutional neural network (CNN) architecture that also incorporates coordinate information. The tested CNNs are UNet, AG-DSV-UNet, VNet, ResNetMed and DenseVoxNet. The 3D-CNNs are trained with a dataset of high resolution (256 × 256) non-contrast and post-contrast CT images containing 64 slices from each of 200 patients. The dataset consists of contiguous CT slices without augmentation and no post-processing step. The experiments show that incorporation of coordinate information improves the segmentation results. The best accuracies on non-contrast and contrast-enhanced images have average dice scores of 97.13% and 96.74%, respectively. Transfer learning from a pre-trained network of a pre-operative dataset to post-operative endovascular aneurysm repair (EVAR) was also performed. The segmentation accuracy of post-operative EVAR using transfer learning on non-contrast and contrast-enhanced CT datasets achieved the best dice scores of 94.90% and 95.66%, respectively.
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Affiliation(s)
- Thanongchai Siriapisith
- Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Peter Haddawy
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
- Bremen Spatial Cognition Center, University of Bremen, Bremen, Germany
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Moungsouy W, Tawanbunjerd T, Liamsomboon N, Kusakunniran W. Face recognition under mask-wearing based on residual inception networks. ACI 2022. [DOI: 10.1108/aci-09-2021-0256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
PurposeThis paper proposes a solution for recognizing human faces under mask-wearing. The lower part of human face is occluded and could not be used in the learning process of face recognition. So, the proposed solution is developed to recognize human faces on any available facial components which could be varied depending on wearing or not wearing a mask.Design/methodology/approachThe proposed solution is developed based on the FaceNet framework, aiming to modify the existing facial recognition model to improve the performance of both scenarios of mask-wearing and without mask-wearing. Then, simulated masked-face images are computed on top of the original face images, to be used in the learning process of face recognition. In addition, feature heatmaps are also drawn out to visualize majority of parts of facial images that are significant in recognizing faces under mask-wearing.FindingsThe proposed method is validated using several scenarios of experiments. The result shows an outstanding accuracy of 99.2% on a scenario of mask-wearing faces. The feature heatmaps also show that non-occluded components including eyes and nose become more significant for recognizing human faces, when compared with the lower part of human faces which could be occluded under masks.Originality/valueThe convolutional neural network based solution is tuned up for recognizing human faces under a scenario of mask-wearing. The simulated masks on original face images are augmented for training the face recognition model. The heatmaps are then computed to prove that features generated from the top half of face images are correctly chosen for the face recognition.
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Karnjanapreechakorn S, Kusakunniran W, Siriapisith T, Saiviroonporn P. Multi-level pooling encoder-decoder convolution neural network for MRI reconstruction. PeerJ Comput Sci 2022; 8:e934. [PMID: 35494819 PMCID: PMC9044365 DOI: 10.7717/peerj-cs.934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 03/04/2022] [Indexed: 06/14/2023]
Abstract
MRI reconstruction is one of the critical processes of MRI machines, along with the acquisition. Due to a slow processing time of signal acquiring, parallel imaging and reconstruction techniques are applied for acceleration. To accelerate the acquisition process, fewer raw data are sampled simultaneously with all RF coils acquisition. Then, the reconstruction uses under-sampled data from all RF coils to restore the final MR image that resembles the fully sampled MR image. These processes have been a traditional procedure inside the MRI system since the invention of the multi-coils MRI machine. This paper proposes the deep learning technique with a lightweight network. The deep neural network is capable of generating the high-quality reconstructed MR image with a high peak signal-to-noise ratio (PSNR). This also opens a high acceleration factor for MR data acquisition. The lightweight network is called Multi-Level Pooling Encoder-Decoder Net (MLPED Net). The proposed network outperforms the traditional encoder-decoder networks on 4-fold acceleration with a significant margin on every evaluation metric. The network can be trained end-to-end, and it is a lightweight structure that can reduce training time significantly. Experimental results are based on a publicly available MRI Knee dataset from the fastMRI competition.
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Affiliation(s)
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Thanongchai Siriapisith
- Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Pairash Saiviroonporn
- Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
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Siriapisith T, Kusakunniran W, Haddawy P. A 3D deep learning approach to epicardial fat segmentation in non-contrast and post-contrast cardiac CT images. PeerJ Comput Sci 2021; 7:e806. [PMID: 34977354 PMCID: PMC8670388 DOI: 10.7717/peerj-cs.806] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 11/12/2021] [Indexed: 06/14/2023]
Abstract
Epicardial fat (ECF) is localized fat surrounding the heart muscle or myocardium and enclosed by the thin-layer pericardium membrane. Segmenting the ECF is one of the most difficult medical image segmentation tasks. Since the epicardial fat is infiltrated into the groove between cardiac chambers and is contiguous with cardiac muscle, segmentation requires location and voxel intensity. Recently, deep learning methods have been effectively used to solve medical image segmentation problems in several domains with state-of-the-art performance. This paper presents a novel approach to 3D segmentation of ECF by integrating attention gates and deep supervision into the 3D U-Net deep learning architecture. The proposed method shows significant improvement of the segmentation performance, when compared with standard 3D U-Net. The experiments show excellent performance on non-contrast CT datasets with average Dice scores of 90.06%. Transfer learning from a pre-trained model of a non-contrast CT to contrast-enhanced CT dataset was also performed. The segmentation accuracy on the contrast-enhanced CT dataset achieved a Dice score of 88.16%.
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Affiliation(s)
- Thanongchai Siriapisith
- Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Peter Haddawy
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
- Bremen Spatial Cognition Center, University of Bremen, Bremen, Germany
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Yao L, Kusakunniran W, Wu Q, Zhang J, Tang Z, Yang W. Robust gait recognition using hybrid descriptors based on Skeleton Gait Energy Image. Pattern Recognit Lett 2021. [DOI: 10.1016/j.patrec.2019.05.012] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Kusakunniran W, Ponn T, Boonsom N, Wahakit S, Thongkanchorn K. Construction of H5-Index for Conference Ranking Indicator and its Correlation to ERA. J Info Know Mgmt 2021. [DOI: 10.1142/s0219649221500118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
This paper develops the Scopus H5-Index rankings, using the field of computer science as a case study. The challenge begins with the inconsistency of conference names. The rule-based approach is invented to automatically clean up duplicate conferences and assign unique pseudo ID for each conference. This data cleansing process is applied on conference names retrieved from both Scopus and ERA/CORE, in order to share common pseudo IDs for the sake of correlation analysis. The proposed data cleansing process is validated using ERA 2010 and CORE 2018 as references and reports the very small errors of 0.6% and 0.4%, respectively. Then, the Scopus H5-Index 2006–2010 and Scopus H5-Index 2014–2018 rankings are constructed and compared with the existing ERA 2010 and CORE 2018 rankings, respectively. The results show that the correlation within the Scopus H5-Index rankings (i.e. Scopus H5-Index 2006–2010 and Scopus H5-Index 2014–2018) is at the top of the moderate correlation band, where the correlation within the ERA/CORE rankings (ERA 2010 and CORE 2018) is at the top of the strong correlation band. While the correlations across ranking systems (i.e. Scopus H5-Index 2006–2010 vs. ERA 2010, and Scopus H5-Index 2014–2018 vs. CORE 2018) are at the bottom and middle of the moderate correlation band. It can be said that the quality assessment using the Scopus H5-Index ranking is more dynamic and quickly up-to-date when compared with the ERA/CORE ranking. Also, these two ranking systems are moderately correlated with each other for both periods of 2010 and 2018.
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Affiliation(s)
- Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Thearith Ponn
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Nuttapol Boonsom
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Suwimol Wahakit
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Kittikhun Thongkanchorn
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
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Yao L, Kusakunniran W, Wu Q, Zhang J. Gait recognition using a few gait frames. PeerJ Comput Sci 2021; 7:e382. [PMID: 33817029 PMCID: PMC7959613 DOI: 10.7717/peerj-cs.382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 01/13/2021] [Indexed: 06/12/2023]
Abstract
Gait has been deemed as an alternative biometric in video-based surveillance applications, since it can be used to recognize individuals from a far distance without their interaction and cooperation. Recently, many gait recognition methods have been proposed, aiming at reducing the influence caused by exterior factors. However, most of these methods are developed based on sufficient input gait frames, and their recognition performance will sharply decrease if the frame number drops. In the real-world scenario, it is impossible to always obtain a sufficient number of gait frames for each subject due to many reasons, e.g., occlusion and illumination. Therefore, it is necessary to improve the gait recognition performance when the available gait frames are limited. This paper starts with three different strategies, aiming at producing more input frames and eliminating the generalization error cause by insufficient input data. Meanwhile, a two-branch network is also proposed in this paper to formulate robust gait representations from the original and new generated input gait frames. According to our experiments, under the limited gait frames being used, it was verified that the proposed method can achieve a reliable performance for gait recognition.
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Affiliation(s)
- Lingxiang Yao
- School of Electrical and Data Engineering, University of Technology Sydney, Sydney, Australia
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Qiang Wu
- School of Electrical and Data Engineering, University of Technology Sydney, Sydney, Australia
| | - Jian Zhang
- School of Electrical and Data Engineering, University of Technology Sydney, Sydney, Australia
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Kusakunniran W, Wiratsudakul A, Chuachan U, Imaromkul T, Kanchanapreechakorn S, Suksriupatham N, Thongkanchorn K. Analysing muzzle pattern images as a biometric for cattle identification. IJBM 2021. [DOI: 10.1504/ijbm.2021.117852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Leelahapongsathon K, Thanapongtharm W, Kusakunniran W, Wiratsudakul A, Youngjitikornkun C, Jiwattanakul J. Map simulation of dogs' behaviour using population density of probabilistic model. IJCAT 2021. [DOI: 10.1504/ijcat.2021.10036097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Kusakunniran W, Karnjanapreechakorn S, Siriapisith T, Borwarnginn P, Sutassananon K, Tongdee T, Saiviroonporn P. COVID-19 detection and heatmap generation in chest x-ray images. J Med Imaging (Bellingham) 2021; 8:014001. [PMID: 33457446 PMCID: PMC7804292 DOI: 10.1117/1.jmi.8.s1.014001] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 12/11/2020] [Indexed: 01/12/2023] Open
Abstract
Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID-19 cases is using chest x-ray images, where signals of the infection are located in lung areas. We propose a solution to automatically classify COVID-19 cases in chest x-ray images. Approach: The ResNet-101 architecture is adopted as the main network with more than 44 millions parameters. The whole net is trained using the large size of 1500 × 1500 x-ray images. The heatmap under the region of interest of segmented lung is constructed to visualize and emphasize signals of COVID-19 in each input x-ray image. Lungs are segmented using the pretrained U-Net. The confidence score of being COVID-19 is also calculated for each classification result. Results: The proposed solution is evaluated based on COVID-19 and normal cases. It is also tested on unseen classes to validate a regularization of the constructed model. They include other normal cases where chest x-ray images are normal without any disease but with some small remarks, and other abnormal cases where chest x-ray images are abnormal with some other diseases containing remarks similar to COVID-19. The proposed method can achieve the sensitivity, specificity, and accuracy of 97%, 98%, and 98%, respectively. Conclusions: It can be concluded that the proposed solution can detect COVID-19 in a chest x-ray image. The heatmap and confidence score of the detection are also demonstrated, such that users or human experts can use them for a final diagnosis in practical usages.
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Affiliation(s)
- Worapan Kusakunniran
- Mahidol University, Faculty of Information and Communication Technology, Nakhon Pathom, Thailand
| | | | | | - Punyanuch Borwarnginn
- Mahidol University, Faculty of Information and Communication Technology, Nakhon Pathom, Thailand
| | - Krittanat Sutassananon
- Mahidol University, Faculty of Information and Communication Technology, Nakhon Pathom, Thailand
| | - Trongtum Tongdee
- Mahidol University, Department of Radiology, Siriraj Hospital, Bangkok, Thailand
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Jiwattanakul J, Youngjitikornkun C, Kusakunniran W, Wiratsudakul A, Thanapongtharm W, Leelahapongsathon K. Map simulation of dogs' behaviour using population density of probabilistic model. IJCAT 2021. [DOI: 10.1504/ijcat.2021.113646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Thongkanchorn K, Suksriupatham N, Imaromkul T, Kanchanapreechakorn S, Wiratsudakul A, Chuachan U, Kusakunniran W. Analysing muzzle pattern images as a biometric for cattle identification. IJBM 2021. [DOI: 10.1504/ijbm.2021.10038945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Siriapisith T, Kusakunniran W, Haddawy P. Pyramid graph cut: Integrating intensity and gradient information for grayscale medical image segmentation. Comput Biol Med 2020; 126:103997. [PMID: 32987203 DOI: 10.1016/j.compbiomed.2020.103997] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 08/30/2020] [Accepted: 08/30/2020] [Indexed: 11/17/2022]
Abstract
Segmentation of grayscale medical images is challenging because of the similarity of pixel intensities and poor gradient strength between adjacent regions. The existing image segmentation approaches based on either intensity or gradient information alone often fail to produce accurate segmentation results. Previous approaches in the literature have approached the problem by embedded or sequential integration of different information types to improve the performance of the image segmentation on specific tasks. However, an effective combination or integration of such information is difficult to implement and not sufficiently generic for closely related tasks. Integration of the two information sources in a single graph structure is a potentially more effective way to solve the problem. In this paper we introduce a novel technique for grayscale medical image segmentation called pyramid graph cut, which combines intensity and gradient sources of information in a pyramid-shaped graph structure using a single source node and multiple sink nodes. The source node, which is the top of the pyramid graph, embeds intensity information into its linked edges. The sink nodes, which are the base of the pyramid graph, embed gradient information into their linked edges. The min-cut uses intensity information and gradient information, depending on which one is more useful or has a higher influence in each cutting location of each iteration. The experimental results demonstrate the effectiveness of the proposed method over intensity-based segmentation alone (i.e. Gaussian mixture model) and gradient-based segmentation alone (i.e. distance regularized level set evolution) on grayscale medical image datasets, including the public 3DIRCADb-01 dataset. The proposed method archives excellent segmentation results on the sample CT of abdominal aortic aneurysm, MRI of liver tumor and US of liver tumor, with dice scores of 90.49±5.23%, 88.86±11.77%, 90.68±2.45%, respectively.
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Affiliation(s)
- Thanongchai Siriapisith
- Department Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhonpathom, 73170, Thailand
| | - Peter Haddawy
- Faculty of Information and Communication Technology, Mahidol University, Nakhonpathom, 73170, Thailand; Bremen Spatial Cognition Center, University of Bremen, Bremen, Germany
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21
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Affiliation(s)
- Worapan Kusakunniran
- Faculty of Information and Communication Technology Mahidol University 999 Phuttamonthon 4 Road Salaya Nakhon Pathom 73170 Thailand
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22
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Wongnak P, Thanapongtharm W, Kusakunniran W, Karnjanapreechakorn S, Sutassananon K, Kalpravidh W, Wongsathapornchai K, Wiratsudakul A. A 'what-if' scenario: Nipah virus attacks pig trade chains in Thailand. BMC Vet Res 2020; 16:300. [PMID: 32838786 PMCID: PMC7446211 DOI: 10.1186/s12917-020-02502-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 07/29/2020] [Indexed: 01/05/2023] Open
Abstract
Background Nipah virus (NiV) is a fatal zoonotic agent that was first identified amongst pig farmers in Malaysia in 1998, in an outbreak that resulted in 105 fatal human cases. That epidemic arose from a chain of infection, initiating from bats to pigs, and which then spilled over from pigs to humans. In Thailand, bat-pig-human communities can be observed across the country, particularly in the central plain. The present study therefore aimed to identify high-risk areas for potential NiV outbreaks and to model how the virus is likely to spread. Multi-criteria decision analysis (MCDA) and weighted linear combination (WLC) were employed to produce the NiV risk map. The map was then overlaid with the nationwide pig movement network to identify the index subdistricts in which NiV may emerge. Subsequently, susceptible-exposed-infectious-removed (SEIR) modeling was used to simulate NiV spread within each subdistrict, and network modeling was used to illustrate how the virus disperses across subdistricts. Results Based on the MCDA and pig movement data, 14 index subdistricts with a high-risk of NiV emergence were identified. We found in our infectious network modeling that the infected subdistricts clustered in, or close to the central plain, within a range of 171 km from the source subdistricts. However, the virus may travel as far as 528.5 km (R0 = 5). Conclusions In conclusion, the risk of NiV dissemination through pig movement networks in Thailand is low but not negligible. The risk areas identified in our study can help the veterinary authority to allocate financial and human resources to where preventive strategies, such as pig farm regionalization, are required and to contain outbreaks in a timely fashion once they occur.
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Affiliation(s)
- Phrutsamon Wongnak
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR EPIA, 63122, Saint-Genès-Champanelle, France.,Université de Lyon, INRAE, VetAgro Sup, UMR EPIA, 69280, Marcy l'Etoile, France
| | | | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | | | - Krittanat Sutassananon
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Wantanee Kalpravidh
- Food and Agriculture Organization of the United Nations, Global Emergency Centre for Transboundary Animal Diseases (ECTAD), Rome, Italy
| | - Kachen Wongsathapornchai
- Food and Agriculture Organization of the United Nations, Regional Office for Asia and the Pacific, Bangkok, Thailand
| | - Anuwat Wiratsudakul
- Department of Clinical Sciences and Public Health, and the Monitoring and Surveillance Center for Zoonotic Diseases in Wildlife and Exotic Animals, Faculty of Veterinary Science, Mahidol University, Nakhon Pathom, Thailand.
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Kusakunniran W, Wiratsudakul A, Chuachan U, Kanchanapreechakorn S, Imaromkul T, Suksriupatham N, Thongkanchorn K. Biometric for Cattle Identification using Muzzle Patterns. INT J PATTERN RECOGN 2020. [DOI: 10.1142/s0218001420560078] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Similar to human biometrics such as faces and fingerprints, animals also have biometrics for individual identifiers. This research paper works on biometrics of cattle using images of muzzle patterns. The proposed approach begins with a training process to construct a cattle face localization model using a Haar feature-based cascade classifier. Then, the watershed technique is applied to segment a region of interest (RoI) of a muzzle area in the detected region of the cattle face. This muzzle ROI is further enhanced to make ridge lines more outstanding. The next step, using two approaches, is to extract a main feature descriptor based on a bag of histograms of oriented gradients (BoHoG) and a histogram of local binary patterns (LBP). Then, the support vector machine (SVM) is applied with the histogram intersection kernel for a final cattle identifier. The proposed method is evaluated using five different datasets including one existing cattle dataset used in previous research works, one newly collected dataset of swamp buffalo captured in a controlled environment, and three newly collected datasets of swamp buffalo captured in an outdoor field environment. This outdoor field environment includes challenges of freely moving cattle and differences in daylight. It could achieve a promising accuracy of 95% for a large dataset of 431 subjects.
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Affiliation(s)
- Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, Nakhon Pathom 73170, Thailand
| | - Anuwat Wiratsudakul
- Department of Clinical Sciences and Public Health, Faculty of Veterinary Science, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, Nakhon Pathom 73170, Thailand
| | - Udom Chuachan
- Veterinary Research and Development Center, (Lower Northeastern Region), Mueang, Surin 32000, Thailand
| | - Sarattha Kanchanapreechakorn
- Faculty of Information and Communication Technology, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, Nakhon Pathom 73170, Thailand
| | - Thanandon Imaromkul
- Veterinary Research and Development Center, (Lower Northeastern Region), Mueang, Surin 32000, Thailand
| | - Noppanut Suksriupatham
- Faculty of Information and Communication Technology, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, Nakhon Pathom 73170, Thailand
| | - Kittikhun Thongkanchorn
- Faculty of Information and Communication Technology, Mahidol University, 999 Phuttamonthon 4 Road, Salaya, Nakhon Pathom 73170, Thailand
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Siriapisith T, Kusakunniran W, Haddawy P. Outer Wall Segmentation of Abdominal Aortic Aneurysm by Variable Neighborhood Search Through Intensity and Gradient Spaces. J Digit Imaging 2019; 31:490-504. [PMID: 29352385 DOI: 10.1007/s10278-018-0049-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Aortic aneurysm segmentation remains a challenge. Manual segmentation is a time-consuming process which is not practical for routine use. To address this limitation, several automated segmentation techniques for aortic aneurysm have been developed, such as edge detection-based methods, partial differential equation methods, and graph partitioning methods. However, automatic segmentation of aortic aneurysm is difficult due to high pixel similarity to adjacent tissue and a lack of color information in the medical image, preventing previous work from being applicable to difficult cases. This paper uses uses a variable neighborhood search that alternates between intensity-based and gradient-based segmentation techniques. By alternating between intensity and gradient spaces, the search can escape from local optima of each space. The experimental results demonstrate that the proposed method outperforms the other existing segmentation methods in the literature, based on measurements of dice similarity coefficient and jaccard similarity coefficient at the pixel level. In addition, it is shown to perform well for cases that are difficult to segment.
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Affiliation(s)
- Thanongchai Siriapisith
- Department Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.,Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, 73170, Thailand
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, 73170, Thailand.
| | - Peter Haddawy
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, 73170, Thailand
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25
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Siriapisith T, Kusakunniran W, Haddawy P. 3D segmentation of exterior wall surface of abdominal aortic aneurysm from CT images using variable neighborhood search. Comput Biol Med 2019; 107:73-85. [PMID: 30782525 DOI: 10.1016/j.compbiomed.2019.01.027] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 01/15/2019] [Accepted: 01/30/2019] [Indexed: 11/18/2022]
Abstract
A 3D model of abdominal aortic aneurysm (AAA) can provide useful anatomical information for clinical management and simulation. Thin-slice contiguous computed tomographic (CT) angiography is the best source of medical images for construction of 3D models, which requires segmentation of AAA in the images. Existing methods for segmentation of AAA rely on either manual process or 2D segmentation in each 2D CT slide. However, a traditional manual segmentation is a time consuming process which is not practical for routine use. The construction of a 3D model from 2D segmentation of each CT slice is not a fully satisfactory solution due to rough contours that can occur because of lack of constraints among segmented slices, as well as missed segmentation slices. To overcome such challenges, this paper proposes the 3D segmentation of AAA using the concept of variable neighborhood search by iteratively alternating between two different segmentation techniques in the two different 3D search spaces of voxel intensity and voxel gradient. The segmentation output of each method is used as the initial contour to the other method in each iteration. By alternating between search spaces, the technique can escape local minima that naturally occur in each search space. Also, the 3D search spaces provide more constraints across CT slices, when compared with the 2D search spaces in individual CT slices. The proposed method is evaluated with 10 easy and 10 difficult cases of AAA. The results show that the proposed 3D segmentation technique achieves the outstanding segmentation accuracy with an average dice similarity value (DSC) of 91.88%, when compared to the other methods using the same dataset, which are the 2D proposed method, classical graph cut, distance regularized level set evolution, and registration based geometric active contour with the DSCs of 87.57 ± 4.52%, 72.47 ± 8.11%, 58.50 ± 8.86% and 76.21 ± 10.49%, respectively.
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Affiliation(s)
- Thanongchai Siriapisith
- Faculty of Information and Communication Technology, Mahidol University, Nakhonpathom, Thailand; Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhonpathom, Thailand.
| | - Peter Haddawy
- Faculty of Information and Communication Technology, Mahidol University, Nakhonpathom, Thailand; Bremen Spatial Cognition Center, University of Bremen, Bremen, Germany
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Kusakunniran W, Dahal AS, Viriyasitavat W. Journal Co-Citation Analysis for Identifying Trends of Inter-Disciplinary Research: An Exploratory Case Study in a University. J Info Know Mgmt 2018. [DOI: 10.1142/s0219649218500405] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
A journal stands as a marker of the intellectual space which holds vast areas of literature. Exploring and analysing the underlined knowledge sources and themes of the journal literature will significantly benefit any institution to identify the key intellectual domain strength and improve in research collaboration. The main objective of this paper is to identify inter-disciplinary trends of research for one university as a case study, using journal co-citation analysis. With the help of correlation metric and cluster analysis, the published literature between 2004 and 2013 from seven subject domains (i.e. including medicine, pharmacy and pharmacology, biological sciences, linguistics, modern languages, chemistry, and computer science and information systems) are analysed and interpreted. The results can demonstrate that there are the strong research dominance in the medical field and the prospective collaboration in social science and chemistry. In addition, the interpretation of the findings could be served as a foundation for future research in the direction of strong bonding between inter-disciplinary fields.
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Affiliation(s)
- Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Amit Singh Dahal
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
| | - Wantanee Viriyasitavat
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand
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Kusakunniran W, Wu Q, Ritthipravat P, Zhang J. Hard exudates segmentation based on learned initial seeds and iterative graph cut. Comput Methods Programs Biomed 2018; 158:173-183. [PMID: 29544783 DOI: 10.1016/j.cmpb.2018.02.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Revised: 02/02/2018] [Accepted: 02/16/2018] [Indexed: 06/08/2023]
Abstract
(Background and Objective): The occurrence of hard exudates is one of the early signs of diabetic retinopathy which is one of the leading causes of the blindness. Many patients with diabetic retinopathy lose their vision because of the late detection of the disease. Thus, this paper is to propose a novel method of hard exudates segmentation in retinal images in an automatic way. (Methods): The existing methods are based on either supervised or unsupervised learning techniques. In addition, the learned segmentation models may often cause miss-detection and/or fault-detection of hard exudates, due to the lack of rich characteristics, the intra-variations, and the similarity with other components in the retinal image. Thus, in this paper, the supervised learning based on the multilayer perceptron (MLP) is only used to identify initial seeds with high confidences to be hard exudates. Then, the segmentation is finalized by unsupervised learning based on the iterative graph cut (GC) using clusters of initial seeds. Also, in order to reduce color intra-variations of hard exudates in different retinal images, the color transfer (CT) is applied to normalize their color information, in the pre-processing step. (Results): The experiments and comparisons with the other existing methods are based on the two well-known datasets, e_ophtha EX and DIARETDB1. It can be seen that the proposed method outperforms the other existing methods in the literature, with the sensitivity in the pixel-level of 0.891 for the DIARETDB1 dataset and 0.564 for the e_ophtha EX dataset. The cross datasets validation where the training process is performed on one dataset and the testing process is performed on another dataset is also evaluated in this paper, in order to illustrate the robustness of the proposed method. (Conclusions): This newly proposed method integrates the supervised learning and unsupervised learning based techniques. It achieves the improved performance, when compared with the existing methods in the literature. The robustness of the proposed method for the scenario of cross datasets could enhance its practical usage. That is, the trained model could be more practical for unseen data in the real-world situation, especially when the capturing environments of training and testing images are not the same.
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Affiliation(s)
- Worapan Kusakunniran
- Faculty of Information and Communication Technology, Mahidol University, Nakhon Pathom, Thailand.
| | - Qiang Wu
- School of Computing and Communications, Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, Australia.
| | - Panrasee Ritthipravat
- Department of Biomedical Engineering, Faculty of Engineer, Mahidol University, Nakhon Pathom, Thailand.
| | - Jian Zhang
- School of Computing and Communications, Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, Australia.
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Kusakunniran W, Wu Q, Zhang J, Li H, Wang L. Recognizing Gaits Across Views Through Correlated Motion Co-Clustering. IEEE Trans Image Process 2014; 23:696-709. [PMID: 26270912 DOI: 10.1109/tip.2013.2294552] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Human gait is an important biometric feature, which can be used to identify a person remotely. However, view change can cause significant difficulties for gait recognition because it will alter available visual features for matching substantially. Moreover, it is observed that different parts of gait will be affected differently by view change. By exploring relations between two gaits from two different views, it is also observed that a part of gait in one view is more related to a typical part than any other parts of gait in another view. A new method proposed in this paper considers such variance of correlations between gaits across views that is not explicitly analyzed in the other existing methods. In our method, a novel motion co-clustering is carried out to partition the most related parts of gaits from different views into the same group. In this way, relationships between gaits from different views will be more precisely described based on multiple groups of the motion co-clustering instead of a single correlation descriptor. Inside each group, a linear correlation between gait information across views is further maximized through canonical correlation analysis (CCA). Consequently, gait information in one view can be projected onto another view through a linear approximation under the trained CCA subspaces. In the end, a similarity between gaits originally recorded from different views can be measured under the approximately same view. Comprehensive experiments based on widely adopted gait databases have shown that our method outperforms the state-of-the-art.
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Kusakunniran W, Qiang Wu, Jian Zhang, Hongdong Li. Gait Recognition Across Various Walking Speeds Using Higher Order Shape Configuration Based on a Differential Composition Model. ACTA ACUST UNITED AC 2012; 42:1654-68. [DOI: 10.1109/tsmcb.2012.2197823] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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