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O'Brien KM, Rix AS, Jasmin A, Lavelle E. The hypoxia response pathway in the Antarctic fish Notothenia coriiceps is functional despite a poly Q/E insertion mutation in HIF-1α. Comp Biochem Physiol Part D Genomics Proteomics 2024; 50:101218. [PMID: 38412701 DOI: 10.1016/j.cbd.2024.101218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 02/12/2024] [Accepted: 02/12/2024] [Indexed: 02/29/2024]
Abstract
Antarctic notothenioid fishes, inhabiting the oxygen-rich Southern Ocean, possess a polyglutamine and glutamic acid (poly Q/E) insertion mutation in the master transcriptional regulator of oxygen homeostasis, hypoxia- inducible factor-1α (HIF-1α). To determine if this mutation impairs the ability of HIF-1 to regulate gene expression in response to hypoxia, we exposed Notothenia coriiceps, with a poly Q/E insertion mutation in HIF-1α that is 9 amino acids long, to hypoxia (2.3 mg L-1 O2) or normoxia (10 mg L -1 O2) for 12 h. Heart ventricles, brain, liver, and gill tissue were harvested and changes in gene expression quantified using RNA sequencing. Levels of glycogen and lactate were also quantified to determine if anaerobic metabolism increases in response to hypoxia. Exposure to hypoxia resulted in 818 unique differentially expressed genes (DEGs) in liver tissue of N. coriiceps. Many hypoxic genes were induced, including ones involved in the MAP kinase and FoxO pathways, glycolytic metabolism, and vascular remodeling. In contrast, there were fewer than 104 unique DEGs in each of the other tissues sampled. Lactate levels significantly increased in liver in response to hypoxia, indicating that anaerobic metabolism increases in response to hypoxia in this tissue. Overall, our results indicate that the hypoxia response pathway is functional in N. coriiceps despite a poly Q/E mutation in HIF-1α, and confirm that Antarctic fishes are capable of altering gene expression in response to hypoxia.
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Affiliation(s)
- K M O'Brien
- University of Alaska Fairbanks, Institute of Arctic Biology and Department of Biology & Wildlife, Fairbanks, AK 99775, USA.
| | - A S Rix
- University of Alaska Fairbanks, Institute of Arctic Biology and Department of Biology & Wildlife, Fairbanks, AK 99775, USA.
| | - A Jasmin
- University of Alaska Fairbanks, Institute of Arctic Biology and Department of Biology & Wildlife, Fairbanks, AK 99775, USA
| | - E Lavelle
- National Center for Genome Resources, Santa Fe, NM 87505, USA.
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2
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Zhu W, Zhao N, Liu W, Guo R, Jin H. Occurrence of microplastics in Antarctic fishes: Abundance, size, shape, and polymer composition. Sci Total Environ 2023; 903:166186. [PMID: 37582441 DOI: 10.1016/j.scitotenv.2023.166186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 08/07/2023] [Accepted: 08/07/2023] [Indexed: 08/17/2023]
Abstract
Presence of microplastics (MPs) in Antarctic ecosystems has attracted global attention, due to the potential threat to the Antarctic marine organisms. However, data on the occurrence of MPs in Antarctic fishes remains very limited. This study investigated the abundance and characteristics of MPs in four species of Antarctic fish (n = 114). The highest mean abundance of MPs was detected in Trematomus eulepidotus (1.7 ± 0.61 items/individual), followed by that in Chionodraco rastrospinosus (1.4 ± 0.26 items/individual), Notolepis coatsi (1.1 ± 0.57 items/individual), and Electrona carlsbergi (0.72 ± 0.19 items/individual). MPs in Notolepis coatsi (mean 747 μm) had the highest mean size, followed by that in Trematomus eulepidotus (653 μm), Chionodraco rastrospinosus (629 μm), and Electrona carlsbergi (473 μm). This is possibly attributed to the feeding habits and egestion behaviors of different Antarctic fishes. Fiber was consistently the predominant shape of MPs in Trematomus eulepidotus, Chionodraco rastrospinosus, and Electrona carlsbergi, accounting for 82 %, 76 %, and 60 % of total items of MPs, respectively. Polypropylene, polyamide, and polyethylene were the predominant polymer composition of MPs in Antarctic fishes, collectively contributed 63-86 % of total items of MPs. This may be because these types of MPs have been widely used in global household materials. To our knowledge, this is the most comprehensive study examining the occurrence of MPs in Antarctic fishes. This study provides fundamental data for evaluating the risks of MP exposure for Antarctic fishes.
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Affiliation(s)
- Wenbin Zhu
- Zhejiang Marine Fisheries Research Institute, Scientific Observing and Experimental Station of Fishery Resources for Key Fishing Grounds, Ministry of Agriculture and Rural Affairs of the People's Republic of China, Key Laboratory of Sustainable Utilization of Technology Research for Fishery Resources of Zhejiang Province, Zhoushan, Zhejiang 316021, PR China
| | - Nan Zhao
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, PR China
| | - Wenbo Liu
- Zhejiang Marine Fisheries Research Institute, Scientific Observing and Experimental Station of Fishery Resources for Key Fishing Grounds, Ministry of Agriculture and Rural Affairs of the People's Republic of China, Key Laboratory of Sustainable Utilization of Technology Research for Fishery Resources of Zhejiang Province, Zhoushan, Zhejiang 316021, PR China
| | - Ruyue Guo
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, PR China
| | - Hangbiao Jin
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, PR China.
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Nguyen PT, Lee S, Jeong J, Kim J, Han DW, Kim IC, Lee JH, Park J, Kim JH. Complete mitochondrial genome of Trematomus newnesi (Perciformes, Nototheniidae). Mitochondrial DNA B Resour 2023; 8:1196-1199. [PMID: 38196755 PMCID: PMC10776061 DOI: 10.1080/23802359.2023.2194456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Accepted: 03/19/2023] [Indexed: 01/11/2024] Open
Abstract
The complete mitochondrial genome of Trematomus newnesi was sequenced using an Illumina platform. The 18,602 bp mitogenome contains 13 protein-coding genes, two rRNAs, and 23 tRNAs (tRNAMet is duplicated). The eight stop codons are TAA, TAG, CTT, GTA, AAT, ACT, AGG, and TTA. Two start codons ATG and GTG are present. The GC content is 44.4% and AT content is 55.6%. A phylogenetic tree was generated using 13 species from three families. The results showed that T. newnesi is closely related to Pagothenia borchgrevinki in Nototheniidae. This study provides fundamental data for further genetic evolutionary studies on T. newnesi.
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Affiliation(s)
- Phuong Thi Nguyen
- Division of Life Sciences, Korea Polar Research Institute, Incheon, Korea
- Polar Science, University of Science and Technology, Daejeon, Korea
| | - Seungyeon Lee
- Division of Life Sciences, Korea Polar Research Institute, Incheon, Korea
- Polar Science, University of Science and Technology, Daejeon, Korea
| | - Jihye Jeong
- Division of Life Sciences, Korea Polar Research Institute, Incheon, Korea
| | - Jihun Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon, Korea
- Polar Science, University of Science and Technology, Daejeon, Korea
| | - Dong-Won Han
- Division of Life Sciences, Korea Polar Research Institute, Incheon, Korea
| | - Il-Chan Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon, Korea
| | - Jun Hyuck Lee
- Polar Science, University of Science and Technology, Daejeon, Korea
- Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Inchon, Korea
| | - Jisoo Park
- Polar Science, University of Science and Technology, Daejeon, Korea
- Division of Ocean Sciences, Korea Polar Research Institute, Inchon, Korea
| | - Jin-Hyoung Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon, Korea
- Polar Science, University of Science and Technology, Daejeon, Korea
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Pacchini S, Piva E, Schumann S, Irato P, Pellegrino D, Santovito G. An Experimental Study on Antioxidant Enzyme Gene Expression in Trematomus newnesi ( Boulenger, 1902) Experimentally Exposed to Perfluoro-Octanoic Acid. Antioxidants (Basel) 2023; 12:antiox12020352. [PMID: 36829911 PMCID: PMC9951861 DOI: 10.3390/antiox12020352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 01/26/2023] [Accepted: 01/31/2023] [Indexed: 02/05/2023] Open
Abstract
Antarctica is the continent with the lowest local human impact; however, it is susceptible to pollution from external sources. Emerging pollutants such as perfluoroalkyl substances pose an increasing threat to this environment and therefore require more in-depth investigations to understand their environmental fate and biological impacts. The present study focuses on expression analysis at the transcriptional level of genes coding for four antioxidant enzymes (sod1, sod2, gpx1, and gpx4) in the liver and kidney of an Antarctic fish species, Trematomus newnesi (Boulenger, 1902). mRNA levels were also assessed in fish exposed to 1.5 μg/L of perfluoro-octanoic acid for 10 days. The kidney showed a higher level of expression than the liver in wildlife specimens. In the liver, the treatment induced an increase in gene expression for all the considered enzymes, whereas in the kidney, it induced a general decrease. The obtained results advance the scientific community's understanding of how the potential future presence of anthropogenic contaminants in the Southern Ocean can affect the antioxidant system of Antarctic fishes. The presence of pollutants belonging to the perfluoroalkyl substances in the Southern Ocean needs to be continuously monitored in parallel with this type of research.
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Affiliation(s)
- Sara Pacchini
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Elisabetta Piva
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Sophia Schumann
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Paola Irato
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Daniela Pellegrino
- Department of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Rende, Italy
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Xiao Y, Yan F, Cui Y, Du J, Hu G, Zhai W, Liu R, Zhang Z, Fang J, Chen L, Yu X. A symbiotic bacterium of Antarctic fish reveals environmental adaptability mechanisms and biosynthetic potential towards antibacterial and cytotoxic activities. Front Microbiol 2023; 13:1085063. [PMID: 36713225 PMCID: PMC9882997 DOI: 10.3389/fmicb.2022.1085063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 12/14/2022] [Indexed: 01/15/2023] Open
Abstract
Antarctic microbes are important agents for evolutionary adaptation and natural resource of bioactive compounds, harboring the particular metabolic pathways to biosynthesize natural products. However, not much is known on symbiotic microbiomes of fish in the Antarctic zone. In the present study, the culture method and whole-genome sequencing were performed. Natural product analyses were carried out to determine the biosynthetic potential. We report the isolation and identification of a symbiotic bacterium Serratia myotis L7-1, that is highly adaptive and resides within Antarctic fish, Trematomus bernacchii. As revealed by genomic analyses, Antarctic strain S. myotis L7-1 possesses carbohydrate-active enzymes (CAZymes), biosynthetic gene clusters (BGCs), stress response genes, antibiotic resistant genes (ARGs), and a complete type IV secretion system which could facilitate competition and colonization in the extreme Antarctic environment. The identification of microbiome gene clusters indicates the biosynthetic potential of bioactive compounds. Based on bioactivity-guided fractionation, serranticin was purified and identified as the bioactive compound, showing significant antibacterial and antitumor activity. The serranticin gene cluster was identified and located on the chrome. Furthermore, the multidrug resistance and strong bacterial antagonism contribute competitive advantages in ecological niches. Our results highlight the existence of a symbiotic bacterium in Antarctic fish largely represented by bioactive natural products and the adaptability to survive in the fish living in Antarctic oceans.
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Affiliation(s)
- Yu Xiao
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Fangfang Yan
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Yukun Cui
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Jiangtao Du
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Guangzhao Hu
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Wanying Zhai
- International Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Rulong Liu
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Zhizhen Zhang
- Ocean College, Zhoushan Campus, Zhejiang University, Zhoushan, China
| | - Jiasong Fang
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China
| | - Liangbiao Chen
- International Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, China,*Correspondence: Liangbiao Chen, ✉
| | - Xi Yu
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, China,Xi Yu, ✉
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6
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Li ZL, Buck M. A proteome-scale analysis of vertebrate protein amino acid occurrence: Thermoadaptation shows a correlation with protein solvation but less so with dynamics. Proteins 2023; 91:3-15. [PMID: 36053994 PMCID: PMC10087973 DOI: 10.1002/prot.26404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 07/06/2022] [Accepted: 07/25/2022] [Indexed: 12/15/2022]
Abstract
Despite differences in behaviors and living conditions, vertebrate organisms share the great majority of proteins, often with subtle differences in amino acid sequence. Here, we present a simple way to analyze the difference in amino acid occurrence by comparing highly homologous proteins on a subproteome level between several vertebrate model organisms. Specifically, we use this method to identify a pattern of amino acid conservation as well as a shift in amino acid occurrence between homeotherms (warm-blooded species) and poikilotherms (cold-blooded species). Importantly, this general analysis and a specific example further establish a broad correlation, if not likely connection between the thermal adaptation of protein sequences and two of their physical features: on average a change in their protein dynamics and, even more strongly, in their solvation. For poikilotherms, such as frog and fish, the lower body temperature is expected to increase the protein-protein interaction due to a decrease in protein internal dynamics. In order to counteract the tendency for enhanced binding caused by low temperatures, poikilotherms enhance the solvation of their proteins by favoring polar amino acids. This feature appears to dominate over possible changes in dynamics for some proteins. The results suggest that a general trend for amino acid choice is part of the mechanism for thermoadaptation of vertebrate organisms at the molecular level.
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Affiliation(s)
- Zhen-Lu Li
- School of Life Science, Tianjin University, Tianjin, China.,Department of Physiology and Biophysics, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - Matthias Buck
- Department of Physiology and Biophysics, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA.,Departments of Pharmacology and of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
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7
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Saravia J, Paschke K, Pontigo JP, Nualart D, Navarro JM, Vargas-Chacoff L. Effects of temperature on the innate immune response on Antarctic and sub- Antarctic fish Harpagifer antarcticus and Harpagifer bispinis challenged with two immunostimulants, LPS and Poly I:C: In vivo and in vitro approach. Fish Shellfish Immunol 2022; 130:391-408. [PMID: 36126838 DOI: 10.1016/j.fsi.2022.09.025] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 08/21/2022] [Accepted: 09/13/2022] [Indexed: 06/15/2023]
Abstract
Rising ocean temperatures due to climate change combined with the intensification of anthropogenic activity can drive shifts in the geographic distribution of species, with the risks of introducing new diseases. In a changing environment, new host-pathogen interactions or changes to existing dynamics represent a major challenge for native species at high latitudes. Notothenioid fish constitute a unique study system since members of this group are found inside and outside Antarctica, are highly adapted to cold and particularly sensitive to temperature increments. However, data about their immune response remains scarce. Here, we aimed to evaluate the innate immune response under thermal stress in two species of Notothenioid fish, Harpagifer antarcticus and Harpagifer bispinis. Adult individuals from both species were collected on King George Island (Antarctica), and Punta Arenas (Chile), respectively. Specimens were assigned to a control group or injected with one of two agents (LPS and Poly I:C) to simulate either a bacterial or viral infection, and subjected to three different temperatures 2, 5 and 8 °C for 1 week. In parallel, we established leukocytes primary cell cultures from head kidney, which were also subjected to the immunostimulants at the same three temperatures, and incubated for 0.5, 1, 3, 6, 12, 24, and 48 h. We evaluated the relative gene expression of genes involved in the innate immune response (TLR1, TLR3, NF-kB, MYD88, IFNGR e IL-8) through real time qPCR. We found differences between species mainly in vivo, where H. antarcticus exhibited upregulation at high temperatures and H. bispinis seemed to have reached their physiological minimum at 2 °C. Although temperature had a strong effect during the in vivo assay for both species, it was negligible for primary cell cultures, which responded primarily to condition and time. Moreover, while leukocytes responded with fluctuations across time points, in vivo both species manifested strong and clear patterns of gene expression. These results highlight the importance of evaluating the effect of multiple stressors and set a precedent for future research.
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Affiliation(s)
- Julia Saravia
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro Fondap de Investigación de Altas Latitudes (Fondap IDEAL), Universidad Austral de Chile, Valdivia, Chile; Escuela de Graduados, Programa de Doctorado en Ciencias de La Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile.
| | - Kurt Paschke
- Centro Fondap de Investigación de Altas Latitudes (Fondap IDEAL), Universidad Austral de Chile, Valdivia, Chile; Instituto de Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile; Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems, BASE, Universidad Austral de Chile, Valdivia, Chile
| | - Juan Pablo Pontigo
- Laboratorio de Biotecnología Aplicada, Facultad de Medicina Veterinaria, Universidad San Sebastián, Puerto Montt, Chile
| | - Daniela Nualart
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro Fondap de Investigación de Altas Latitudes (Fondap IDEAL), Universidad Austral de Chile, Valdivia, Chile; Escuela de Graduados, Programa de Doctorado en Ciencias de La Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile; Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems, BASE, Universidad Austral de Chile, Valdivia, Chile
| | - Jorge M Navarro
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro Fondap de Investigación de Altas Latitudes (Fondap IDEAL), Universidad Austral de Chile, Valdivia, Chile
| | - Luis Vargas-Chacoff
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro Fondap de Investigación de Altas Latitudes (Fondap IDEAL), Universidad Austral de Chile, Valdivia, Chile; Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems, BASE, Universidad Austral de Chile, Valdivia, Chile.
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8
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O’Brien KM, Oldham CA, Sarrimanolis J, Fish A, Castellini L, Vance J, Lekanof H, Crockett EL. Warm acclimation alters antioxidant defences but not metabolic capacities in the Antarctic fish, Notothenia coriiceps. Conserv Physiol 2022; 10:coac054. [PMID: 35935168 PMCID: PMC9346567 DOI: 10.1093/conphys/coac054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 06/14/2022] [Accepted: 07/19/2022] [Indexed: 06/15/2023]
Abstract
The Southern Ocean surrounding the Western Antarctic Peninsula region is rapidly warming. Survival of members of the dominant suborder of Antarctic fishes, the Notothenioidei, will likely require thermal plasticity and adaptive capacity in key traits delimiting thermal tolerance. Herein, we have assessed the thermal plasticity of several cellular and biochemical pathways, many of which are known to be associated with thermal tolerance in notothenioids, including mitochondrial function, activities of aerobic and anaerobic enzymes, antioxidant defences, protein ubiquitination and degradation in cardiac, oxidative skeletal muscles and gill of Notothenia coriiceps warm acclimated to 4°C for 22 days or 5°C for 42 days. Levels of triacylglycerol (TAG) were measured in liver and oxidative and glycolytic skeletal muscles, and glycogen in liver and glycolytic muscle to assess changes in energy stores. Metabolic pathways displayed minimal thermal plasticity, yet antioxidant defences were lower in heart and oxidative skeletal muscles of warm-acclimated animals compared with animals held at ambient temperature. Despite higher metabolic rates at elevated temperature, energy storage depots of TAG and glycogen increase in liver and remain unchanged in muscle with warm acclimation. Overall, our studies reveal that N. coriiceps displays thermal plasticity in some key traits that may contribute to their survival as the Southern Ocean continues to warm.
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Affiliation(s)
- Kristin M O’Brien
- Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775 USA
| | - Corey A Oldham
- Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775 USA
| | - Jon Sarrimanolis
- Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775 USA
| | - Autumn Fish
- Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775 USA
| | - Luke Castellini
- Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775 USA
| | - Jenna Vance
- Department of Biological Sciences, Ohio University, Athens, OH 45701 USA
| | - Hayley Lekanof
- Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775 USA
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Lee S, Koo MH, Han DW, Kim IC, Lee JH, Kim JH, Sultana R, Kim SY, Youn UJ, Kim JH. Comparison of Fatty Acid Contents and MMP-1 Inhibitory Effects of the Two Antarctic Fish, Notothenia rossii and Champsocephalus gunnari. Molecules 2022; 27:molecules27144554. [PMID: 35889426 PMCID: PMC9317339 DOI: 10.3390/molecules27144554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 07/15/2022] [Accepted: 07/15/2022] [Indexed: 12/04/2022] Open
Abstract
Total fatty-acid (FA) contents of different organs (stomach, liver, brain, and skin) of two Antarctic fish, marbled rockcod (Notothenia rossii) and mackerel icefish (Champsocephalus gunnari), were examined using gas chromatography–mass spectrometry (GC–MS). N. rossii possessed higher contents of total omega-3, where eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), the most represented omega-3 FAs, were distributed throughout all parts of the fish. The highest level of EPA was observed in the skin and that of DHA was observed in the brain of N. rossii. C. gunnari showed organ peculiarity in that most of the omega-3 FAs were found in stomach and skin. Specifically, the highest levels of EPA and DHA were both observed in the stomach. Although N. rossii and C. gunnari both inhabit the Antarctic Southern Oceans, their characteristics in terms of the composition of fatty acids were shown to vary. The extracts were also evaluated for matrix metalloproteinase-1 (MMP-1)-inhibitory activities in UVB-induced human dermal fibroblasts, where extracts of the skin and liver of N. rossii showed the most significant inhibition upon MMP-1 production. These findings provide experimental evidence that the extracts of the Antarctic fish could be utilized as bioactive nutrients, particularly in the enhancement of skin health.
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Affiliation(s)
- Seulah Lee
- Division of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, Korea; (S.L.); (D.-W.H.); (I.-C.K.); (J.-H.K.)
- Seoul School of Integrated Sciences & Technologies (aSSIST), Seoul 03767, Korea
| | - Man Hyung Koo
- Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Korea; (M.H.K.); (J.H.L.)
| | - Dong-Won Han
- Division of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, Korea; (S.L.); (D.-W.H.); (I.-C.K.); (J.-H.K.)
| | - Il-Chan Kim
- Division of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, Korea; (S.L.); (D.-W.H.); (I.-C.K.); (J.-H.K.)
| | - Jun Hyuck Lee
- Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Korea; (M.H.K.); (J.H.L.)
- Polar Science, University of Science & Technology, Incheon 21990, Korea
| | - Jeong-Hoon Kim
- Division of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, Korea; (S.L.); (D.-W.H.); (I.-C.K.); (J.-H.K.)
| | - Razia Sultana
- Department of Pharmacy, Jagannath University, Dhaka 1100, Bangladesh;
| | - Sun Yeou Kim
- College of Pharmacy, Gachon University, 191 Hambakmoero, Yeonsu-gu, Incheon 21936, Korea;
| | - Ui Joung Youn
- Division of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, Korea; (S.L.); (D.-W.H.); (I.-C.K.); (J.-H.K.)
- Polar Science, University of Science & Technology, Incheon 21990, Korea
- Correspondence: (U.J.Y.); (J.-H.K.); Tel.: +82-32-760-5562 (U.J.Y.); +82-32-760-5583 (J.-H.K.)
| | - Jin-Hyoung Kim
- Division of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, Korea; (S.L.); (D.-W.H.); (I.-C.K.); (J.-H.K.)
- Polar Science, University of Science & Technology, Incheon 21990, Korea
- Correspondence: (U.J.Y.); (J.-H.K.); Tel.: +82-32-760-5562 (U.J.Y.); +82-32-760-5583 (J.-H.K.)
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10
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Purser A, Hehemann L, Boehringer L, Tippenhauer S, Wege M, Bornemann H, Pineda-Metz SEA, Flintrop CM, Koch F, Hellmer HH, Burkhardt-Holm P, Janout M, Werner E, Glemser B, Balaguer J, Rogge A, Holtappels M, Wenzhoefer F. A vast icefish breeding colony discovered in the Antarctic. Curr Biol 2022; 32:842-850.e4. [PMID: 35030328 DOI: 10.1016/j.cub.2021.12.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Revised: 10/15/2021] [Accepted: 12/08/2021] [Indexed: 10/19/2022]
Abstract
A breeding colony of notothenioid icefish (Neopagetopsis ionah, Nybelin 1947) of globally unprecedented extent has been discovered in the southern Weddell Sea, Antarctica. The colony was estimated to cover at least ∼240 km2 of the eastern flank of the Filchner Trough, comprised of fish nests at a density of 0.26 nests per square meter, representing an estimated total of ∼60 million active nests and associated fish biomass of >60,000 tonnes. The majority of nests were each occupied by 1 adult fish guarding 1,735 eggs (±433 SD). Bottom water temperatures measured across the nesting colony were up to 2°C warmer than the surrounding bottom waters, indicating a spatial correlation between the modified Warm Deep Water (mWDW) upflow onto the Weddell Shelf and the active nesting area. Historical and concurrently collected seal movement data indicate that this concentrated fish biomass may be utilized by predators such as Weddell seals (Leptonychotes weddellii, Lesson 1826). Numerous degraded fish carcasses within and near the nesting colony suggest that, in death as well as life, these fish provide input for local food webs and influence local biogeochemical processing. To our knowledge, the area surveyed harbors the most spatially expansive continuous fish breeding colony discovered to date globally at any depth, as well as an exceptionally high Antarctic seafloor biomass. This discovery provides support for the establishment of a regional marine protected area in the Southern Ocean under the Convention on the Conservation of Antarctic Marine Living Resources (CCAMLR) umbrella. VIDEO ABSTRACT.
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Affiliation(s)
- Autun Purser
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany.
| | - Laura Hehemann
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Lilian Boehringer
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany; Universität Bremen (Fachbereich 2, Biologie/Chemie), 28334 Bremen, Germany
| | - Sandra Tippenhauer
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Mia Wege
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany; Mammal Research Institute, Department of Zoology & Entomology, University of Pretoria, Pretoria, South Africa
| | - Horst Bornemann
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Santiago E A Pineda-Metz
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Clara M Flintrop
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Florian Koch
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Hartmut H Hellmer
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Patricia Burkhardt-Holm
- Programme Man-Society-Environment, Department of Environmental Sciences, University of Basel, Vesalgasse 1, CH-4051 Basel, Switzerland
| | - Markus Janout
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Ellen Werner
- HafenCity University Hamburg, Henning-Voscherau-Platz 1, 20457 Hamburg, Germany
| | - Barbara Glemser
- Universität Bremen (Fachbereich 2, Biologie/Chemie), 28334 Bremen, Germany; Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
| | - Jenna Balaguer
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Andreas Rogge
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany; Institute for Ecosystem Research, Kiel University, Kiel, Germany
| | - Moritz Holtappels
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Frank Wenzhoefer
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany; Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany; Department of Biology, University of Southern Denmark, HADAL and Nordcee, 5230 Odense M, Denmark
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11
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Fusco C, Agrillo B, Gogliettino M, Palmieri G, Cocca E. In Vitro Assays for the Bifunctional Acylpeptide Hydrolase (APEH) Enzyme from Antarctic Fish. Methods Mol Biol 2022; 2498:413-424. [PMID: 35727561 DOI: 10.1007/978-1-0716-2313-8_25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The bifunctional enzyme acylpeptide hydrolase (APEH) is involved in important metabolic processes both as an exopeptidase and as an endopeptidase. Hence, the growing interest in the study of this protein and the need to set up in vitro assays for its characterization. This chapter describes two in vitro assays able to detect the activities of APEH, one for the exopeptidase activity and one for the endopeptidase activity. In particular, these assays have been set up on the two APEH isoforms from Antarctic fish, characterized by a distinct functionality and marked exo- and endopeptidase activities.
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Affiliation(s)
- Carmela Fusco
- Institute of Biosciences and BioResources, National Research Council (IBBR-CNR), Naples, Italy
- Department of Medicine and Health Sciences, University of Molise, Campobasso, Italy
| | - Bruna Agrillo
- Institute of Biosciences and BioResources, National Research Council (IBBR-CNR), Naples, Italy
- Materias Srl, Naples, Italy
| | - Marta Gogliettino
- Institute of Biosciences and BioResources, National Research Council (IBBR-CNR), Naples, Italy
| | - Gianna Palmieri
- Institute of Biosciences and BioResources, National Research Council (IBBR-CNR), Naples, Italy
| | - Ennio Cocca
- Institute of Biosciences and BioResources, National Research Council (IBBR-CNR), Naples, Italy.
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12
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Ríos JM, Mammana SB, Moreira E, Poma G, Malarvannan G, Barrera-Oro E, Covaci A, Ciocco NF, Altamirano JC. Accumulation of PBDEs and MeO-PBDEs in notothenioid fish from the South Shetland Islands, Antarctica: An interspecies comparative study. Mar Pollut Bull 2021; 168:112453. [PMID: 33971454 DOI: 10.1016/j.marpolbul.2021.112453] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 04/28/2021] [Accepted: 05/01/2021] [Indexed: 06/12/2023]
Abstract
Concentrations of polybrominated diphenyl ethers (PBDEs) and methoxylated polybrominated diphenyl ethers (MeO-PBDEs); are reported in specimens of fish notothenioids Chaenocephalus aceratus (SSI), Trematomus bernacchii (ERN), and Nototheniops nudifrons (NOD) from the South Shetland Islands, Antarctica. Significant differences in the accumulation of 2'-MeO-BDE-68 and 6-MeO-BDE-47 were detected among the analysed species. MeO-BDEs were significantly higher in SSI (11.7, 8.6, and 14.1 ng g-1 lw) than in NOD (1.63, 1.63, and 3.0 ng g-1 lw) in muscle, liver, and gill, respectively. Feeding ecology traits explain the accumulation patterns of MeO-PBDEs. SSI has a higher feeding activity with a broader diet, followed by ERN, whereas NOD is a benthic/sedentary fish with a narrower diet. The accumulation of PBDEs was neither species-, nor tissue-specific. The current study expands the knowledge concerning the accumulation of PBDEs and MeO-PBDEs in Antarctic marine fish and supports the importance of species-specificity in the accumulation of MeO-PBDEs.
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Affiliation(s)
- Juan Manuel Ríos
- Laboratorio de Química Ambiental, Instituto Argentino de Nivología, Glaciología y Ciencias Ambientales (IANIGLA, CCT-CONICET), Mendoza 5500, Argentina; Instituto de Medicina y Biología Experimental de Cuyo (IMBECU, CCT-CONICET), Mendoza 5505, Argentina
| | - Sabrina B Mammana
- Laboratorio de Química Ambiental, Instituto Argentino de Nivología, Glaciología y Ciencias Ambientales (IANIGLA, CCT-CONICET), Mendoza 5500, Argentina; Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Cuyo, Mendoza, Argentina; Instituto de Biología Agrícola de Mendoza (IBAM, CCT-CONICET), Mendoza 5505, Argentina
| | - Eugenia Moreira
- Instituto Antártico Argentino (IAA), Buenos Aires, Argentina; Laboratorio de Biología Funcional y Biotecnología (BIOLAB), INBIOTEC-CONICET, Facultad de Agronomía, UNCPBA, Azul 7300, Buenos Aires, Argentina
| | - Giulia Poma
- Toxicological Centre, Department of Pharmaceutical Sciences, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium
| | - Govindan Malarvannan
- Toxicological Centre, Department of Pharmaceutical Sciences, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium
| | - Esteban Barrera-Oro
- Instituto Antártico Argentino (IAA), Buenos Aires, Argentina; Museo Argentino de Ciencias Naturales Bernardino Rivadavia and CONICET, Buenos Aires, Argentina
| | - Adrian Covaci
- Toxicological Centre, Department of Pharmaceutical Sciences, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium
| | - Nestor F Ciocco
- Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Cuyo, Mendoza, Argentina; Instituto Argentino de Investigaciones de las Zonas Áridas (IADIZA, CCT-CONICET), Mendoza 5500, Argentina
| | - Jorgelina C Altamirano
- Laboratorio de Química Ambiental, Instituto Argentino de Nivología, Glaciología y Ciencias Ambientales (IANIGLA, CCT-CONICET), Mendoza 5500, Argentina; Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Cuyo, Mendoza, Argentina.
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13
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Dara M, Giulianini PG, Manfrin C, Parisi MG, Parrinello D, La Corte C, Vasta GR, Cammarata M. F-type lectin from serum of the Antarctic teleost fish Trematomus bernacchii (Boulenger, 1902): Purification, structural characterization, and bacterial agglutinating activity. Comp Biochem Physiol B Biochem Mol Biol 2021; 256:110633. [PMID: 34126205 DOI: 10.1016/j.cbpb.2021.110633] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 05/31/2021] [Accepted: 06/07/2021] [Indexed: 10/21/2022]
Abstract
The increasing availability of sequenced genomes has enabled a deeper understanding of the complexity of fish lectin repertoires involved in early development and immune recognition. The teleost fucose-type lectin (FTL) family includes proteins that preferentially bind fucose and display tandemly arrayed carbohydrate-recognition domains (CRDs) or are found in mosaic combinations with other domains. They function as opsonins, promoting phagocytosis and the clearance of microbial pathogens. The Antarctic fish Trematomus bernacchii is a Perciforme living at extremely low temperatures (-1.68 °C) which is considered a model for studying adaptability to the variability of environmental waters. Here, we isolated a Ca++-independent fucose-binding protein from the serum of T. bernacchii by affinity chromatography with apparent molecular weights of 32 and 30 kDa under reducing and non-reducing conditions, respectively. We have characterized its carbohydrate binding properties, thermal stability and potential ability to recognize bacterial pathogens. In western blot analysis, the protein showed intense cross-reactivity with antibodies specific for a sea bass (Dicentrarchus labrax) fucose-binding lectin. In addition, its molecular and structural aspects, showing that it contains two CRD-FTLs confirmed that T. bernacchii FTL (TbFTL) is a bona fide member of the FTL family, with binding activity at low temperatures and the ability to agglutinate bacteria, thereby suggesting it participates in host-pathogen interactions in low temperature environments.
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Affiliation(s)
- Mariano Dara
- Marine Immunobiology Laboratory, Department of Earth and Marine Sciences, University of Palermo, Palermo, Italy.
| | | | - Chiara Manfrin
- Department of Life Sciences, University of Trieste, Building Q - room 306, Trieste, Italy.
| | - Maria Giovanna Parisi
- Marine Immunobiology Laboratory, Department of Earth and Marine Sciences, University of Palermo, Palermo, Italy.
| | - Daniela Parrinello
- Marine Immunobiology Laboratory, Department of Earth and Marine Sciences, University of Palermo, Palermo, Italy.
| | - Claudia La Corte
- Marine Immunobiology Laboratory, Department of Earth and Marine Sciences, University of Palermo, Palermo, Italy.
| | - Gerardo R Vasta
- Department of Microbiology and Immunology, University of Maryland School of Medicine, UMB, IMET, Suite 236, Columbus Center, 701 East Pratt Street, Baltimore, MD 21202, USA.
| | - Matteo Cammarata
- Marine Immunobiology Laboratory, Department of Earth and Marine Sciences, University of Palermo, Palermo, Italy.
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14
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Vargas-Chacoff L, Dann F, Paschke K, Oyarzún-Salazar R, Nualart D, Martínez D, Wilson JM, Guerreiro PM, Navarro JM. Freshening effect on the osmotic response of the Antarctic spiny plunderfish Harpagifer antarcticus. J Fish Biol 2021; 98:1558-1571. [PMID: 33452810 DOI: 10.1111/jfb.14676] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 01/05/2021] [Accepted: 01/14/2021] [Indexed: 06/12/2023]
Abstract
Global warming is having a significant impact around the world, modifying environmental conditions in many areas, including in zones that have been thermally stable for thousands of years, such as Antarctica. Stenothermal sedentary intertidal fish species may suffer due to warming, notably if this causes water freshening from increased freshwater inputs. Acute decreases in salinity, from 33 down to 5, were used to assess osmotic responses to environmental salinity fluctuations in Antarctic spiny plunderfish Harpagifer antarcticus, in particular to evaluate if H. antarcticus is able to cope with freshening and to describe osmoregulatory responses at different levels (haematological variables, muscle water content, gene expression, NKA activity). H. antarcticus were acclimated to a range of salinities (33 as control, 20, 15, 10 and 5) for 1 week. At 5, plasma osmolality and calcium concentration were both at their lowest, while plasma cortisol and percentage muscle water content were at their highest. At the same salinity, gill and intestine Na+ -K+ -ATPase (NKA) activities were at their lowest and highest, respectively. In kidney, NKA activity was highest at intermediate salinities (15 and 10). The salinity-dependent NKA mRNA expression patterns differed depending on the tissue. Marked changes were also observed in the expression of genes coding membrane proteins associated with ion and water transport, such as NKCC2, CFTR and AQP8, and in the expression of mRNA for the regulatory hormone prolactin (PRL) and its receptor (PRLr). Our results demonstrate that freshening causes osmotic imbalances in H. antarcticus, apparently due to reduced capacity of both transport and regulatory mechanisms of key organs to maintain homeostasis. This has implications for fish species that have evolved in stable environmental conditions in the Antarctic, now threatened by climate change.
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Affiliation(s)
- Luis Vargas-Chacoff
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
- Centro Fondap de Investigación de Altas Latitudes, Universidad Austral de Chile, Valdivia, Chile
| | - Francisco Dann
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
- Centro Fondap de Investigación de Altas Latitudes, Universidad Austral de Chile, Valdivia, Chile
| | - Kurt Paschke
- Centro Fondap de Investigación de Altas Latitudes, Universidad Austral de Chile, Valdivia, Chile
- Instituto de Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile
| | - Ricardo Oyarzún-Salazar
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
- Centro Fondap de Investigación de Altas Latitudes, Universidad Austral de Chile, Valdivia, Chile
- Escuela de Graduados Programa de Doctorado en Ciencias de la Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile
| | - Daniela Nualart
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
| | - Danixa Martínez
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
| | - Jonathan M Wilson
- Wilfrid Laurier University, Waterloo, Ontario, Canada
- Centro Interdisciplinar de Investigação Marinha e Ambiental, Matosinhos, Portugal
| | | | - Jorge M Navarro
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
- Centro Fondap de Investigación de Altas Latitudes, Universidad Austral de Chile, Valdivia, Chile
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15
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Giuliani ME, Nardi A, Di Carlo M, Benedetti M, Regoli F. Transcriptional and Catalytic Responsiveness of the Antarctic Fish Trematomus bernacchii Antioxidant System toward Multiple Stressors. Antioxidants (Basel) 2021; 10:410. [PMID: 33803125 DOI: 10.3390/antiox10030410] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 03/04/2021] [Accepted: 03/05/2021] [Indexed: 01/08/2023] Open
Abstract
Ocean-warming and acidification jeopardize Antarctic marine species, adapted to cold and constant conditions and naturally exposed to high pro-oxidant pressures and cadmium (Cd) bioavailability. The aim of this study was to investigate if projected temperature increase and pH reduction may affect the accumulation and the effects of Cd in the rockcod Trematomus bernacchii. Organisms were exposed for 14 days to six scenarios, combining environmental or increased temperature (−1 °C, +1 °C) and control or reduced pH (8.05, 7.60), either with or without Cd (40 µg/L). Responses in liver and gills were analyzed at different levels, including mRNA and functional measurements of metallothioneins and of a wide battery of antioxidants, integrated with the evaluation of the total antioxidant capacity and onset of oxidative damages. In the gills, metallothioneins and mRNA of antioxidant genes (nrf2, keap1, cat, gpx1) increased after Cd exposure, but such effects were softened by warming and acidification. Antioxidants showed slighter variations at the enzymatic level, while Cd caused glutathione increase under warming and acidified scenarios. In the liver, due to higher basal antioxidant protection, limited effects were observed. Genotoxic damage increased under the combined stressors scenario. Overall results highlighted the modulation of the oxidative stress response to Cd by multiple stressors, suggesting the vulnerability of T. bernacchii under predicted ocean change scenarios.
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16
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Vargas-Chacoff L, Martínez D, Oyarzún-Salazar R, Paschke K, Navarro JM. The osmotic response capacity of the Antarctic fish Harpagifer antarcticus is insufficient to cope with projected temperature and salinity under climate change. J Therm Biol 2021; 96:102835. [PMID: 33627273 DOI: 10.1016/j.jtherbio.2021.102835] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 12/04/2020] [Accepted: 01/02/2021] [Indexed: 11/27/2022]
Abstract
Over the last decades, climate change has intensified. Temperatures have increased and seawater has become "fresher" in Antarctica, affecting fish such as Harpagifer antarcticus. Thus, this study aimed to evaluate changes in the osmoregulatory response of the Antarctic notothenioid fish Harpagifer antarcticus and evaluate how it will cope with the future climate change and environmental conditions in the Antarctic, and in the hypothetical case that its geographical distribution will be extended to the Magellanes region. The present study was undertaken to determine the interaction between temperature and salinity tolerance (2 °C and 33 psu as the control group, the experimental groups were 5, 8, and 11 °C and 28 and 23 psu) and their effect on the osmoregulatory status of H. antarcticus. We evaluated changes in gill-kidney-intestine NKA activity, gene expression of NKAα, NKCC, CFTR, Aquaporins 1 and 8 in the same tissues, muscle water percentage, and plasma osmolality to evaluate osmoregulatory responses. Plasma osmolality decreased with high temperature, also the gill-kidney-intestine NKA activity, gene expression of NKA α, NKCC, CFTR, Aquaporins 1, and 8 were modified by temperature and salinity. We demonstrated that H. antarcticus can not live in the Magallanes region, due to its incapacity to put up with temperatures over 5 °C and with over 8 °C being catastrophic.
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Affiliation(s)
- L Vargas-Chacoff
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile.
| | - D Martínez
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile
| | - R Oyarzún-Salazar
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile; Escuela de Graduados Programa de Doctorado en Ciencias de la Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile
| | - K Paschke
- Centro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile; Instituto de Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile
| | - J M Navarro
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile; Centro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile
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17
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Martínez DP, Sousa C, Oyarzún R, Pontigo JP, Canario AVM, Power DM, Vargas-Chacoff L, Guerreiro PM. LPS Modulates the Expression of Iron-Related Immune Genes in Two Antarctic Notothenoids. Front Physiol 2020; 11:102. [PMID: 32116802 PMCID: PMC7033475 DOI: 10.3389/fphys.2020.00102] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Accepted: 01/28/2020] [Indexed: 12/16/2022] Open
Abstract
The non-specific immunity can induce iron deprivation as a defense mechanism against potential bacterial pathogens, but little information is available as to its role in Antarctic fish. In this study the response of iron metabolism related genes was evaluated in liver and head kidney of the Antarctic notothenoids Notothenia coriiceps and Notothenia rossii 7 days after lipopolysaccharide (LPS) injection. Average plasma Fe2+ concentration was unaffected by treatment in any of the species. The gene expression response to LPS varied between tissues and species, being stronger in N. coriiceps and more prominent in the head kidney than liver. The reaction to LPS was marked by increased individual variability in most genes analyzed, even when the change in expression was not statistically significant, suggesting different individual sensitivity and coping responses in these wild fish. We found that iron related genes had an attenuated and homogenous response to LPS but there was no detectable relationship between plasma Fe2+ and gene expression. However, overall in both tissues and species LPS exposure set a multilevel response that concur to promote intracellular accumulation of iron, an indication that Antarctic Notothenoids use innate nutritional immunity as a resistance mechanism against pathogens.
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Affiliation(s)
- Danixa Pamela Martínez
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile.,Centro Fondap de Investigación de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile
| | - Carmen Sousa
- Centro de Ciências do Mar (CCMAR), Universidade do Algarve, Faro, Portugal
| | - Ricardo Oyarzún
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile.,Centro Fondap de Investigación de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile.,Escuela de Graduados, Programa de Doctorado en Ciencias de la Acuicultura, Universidad Austral de Chile, Puerto Montt, Chile
| | - Juan Pablo Pontigo
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
| | | | - Deborah Mary Power
- Centro de Ciências do Mar (CCMAR), Universidade do Algarve, Faro, Portugal
| | - Luis Vargas-Chacoff
- Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile.,Centro Fondap de Investigación de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile
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18
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Przepiura TCS, Herrerias T, Kandalski PK, Zaleski T, Machado C, Forgati M, Souza MRDP, Donatti L. Metabolic responses in Antarctic Nototheniidae brains subjected to thermal stress. Brain Res 2019; 1708:126-37. [PMID: 30527682 DOI: 10.1016/j.brainres.2018.12.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 11/08/2018] [Accepted: 12/04/2018] [Indexed: 12/23/2022]
Abstract
Antarctic Nototheniidae is an attractive group for studying metabolic and physiological responses at high temperatures. The present work investigated the metabolic responses of the carbohydrate metabolism and antioxidant system to thermal stress at 8 °C (for 2-144 h) in the brains of Notothenia rossii and Notothenia coriiceps. In N. coriiceps, glycogenolysis was essential in the first hours of exposure (2 h) at 8 °C and, in addition to inhibiting glucose-6-phosphatase activity, was important for activating the pentose phosphate pathway. In N. rossii, anaerobic metabolism was reduced in the first hours of exposure (2 and 6 h) at 8 °C, followed by reduced hexokinase activity, suggesting energy regulation between neurons and astrocytes. The antioxidant system results indicated the importance of the actions of the glutathione-dependent antioxidant enzymes glutathione-S-transferase and glutathione peroxidase as well as those of catalase in N. coriiceps and the action of glutathione-S-transferase, glutathione peroxidase and glutathione reductase in N. rossii, especially during the first 12 h of thermal stress exposure. These results indicate tissue-specific patterns and species-specific responses to this stress.
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19
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Song W, Li L, Huang H, Jiang K, Zhang F, Wang L, Zhao M, Ma L. Tissue-based transcriptomics of Chionodraco hamatus: Sequencing, de novo assembly, annotation and marker discovery. J Fish Biol 2019; 94:251-260. [PMID: 30548619 DOI: 10.1111/jfb.13882] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 12/05/2018] [Indexed: 06/09/2023]
Abstract
Here, we explored the liver, heart and muscle tissue transcriptome of the haemoglobinless Antarctic fish Chionodraco hamatus using the Illumina paired-end RNA sequencing. A total of 114,028 unigenes with a mean length of 794.24 bp was produced. Annotation of these unigenes showed that 29.16% and 35.52% of them had hits in the nucleotide (Nt) and protein (Nr) databases, respectively. In addition, 29.10% and 35.28% unigenes were annotated in the SwissProt and TrEMBL databases while 23.27% and 21.08% of unigenes were annotated in the conserved domain (CCD) and protein family (PFAM) databases, respectively. The results of eukaryotic orthologous groups (KOG) classification analysis showed that around 21.36% of unigenes could be mapped. Differential gene expression analysis indicated that 16,331, 16,291 and 13,262 differentially expressed genes (DEG) could be screened between muscle and heart, muscle and liver and heart and liver, respectively. A significant enrichment analysis of these DEGs revealed their implication in important biological processes, molecular functions, cellular components and diverse pathways. Furthermore, a total of 24,455 simple sequence repeats (SSR) were detected from the generated tissue transcriptome. The transcriptome data produced in this study will constitute an important resource for improving our knowledge of C. hamatus functional genomics and will facilitate future studies regarding this species.
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Affiliation(s)
- Wei Song
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
| | - Lingzhi Li
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
| | - Hongliang Huang
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
| | - Keji Jiang
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
| | - Fengying Zhang
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
| | - Luming Wang
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
| | - Ming Zhao
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
| | - Lingbo Ma
- Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China
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Muñoz G, Rebolledo M. Comparison of the parasite community of two notothens, Notothenia rossii and N. coriiceps (Pisces: Nototheniidae), from King George Island, Antarctica. J Helminthol 2019; 93:732-7. [PMID: 30270818 DOI: 10.1017/S0022149X18000858] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
In this study, we analysed and compared the whole parasite community from the fish Notothenia rossii and Notothenia coriiceps collected from Fildes Bay at King George Island, Antarctica, during January-February 2017 in a field campaign supported by the Chilean Antarctic Institute. The fish samples collected were 45 specimens of N. rossii and 22 of N. coriiceps, with total lengths averaging 29.7 ± 5.3 cm and 32.5 ± 3.2 cm, respectively. Fish were dissected to collect their internal and external parasites. All the fish were parasitized; 13 taxa were found in N. rossii and 12 taxa in N. coriiceps. Acanthocephalans, mainly Metacanthocephalus johnstoni and Aspersentis megarhynchus, were the most abundant and prevalent parasites in both fish species. The abundance and richness of the parasite infracommunity increased with the host body length only in N. rossii. Twelve parasitic taxa were shared by both notothen species. Abundance and prevalence of parasitic taxa, as well as the average richness and abundance of the parasite infracommunities were mostly similar between the two fish species. Parasite compositions of N. coriiceps reported in published studies from King George Island were relatively comparable to our sample. We concluded that the two congeneric and sympatric fish species had highly similar parasite communities, which indicates that they use resources in a similar way, thus allowing them to become parasitized with the same parasitic species and in the same abundances. All parasites recorded in this study have been found in several other fish species; therefore, parasites from notothens are considered to be generalists.
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21
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Bilyk KT, Vargas-Chacoff L, Cheng CHC. Evolution in chronic cold: varied loss of cellular response to heat in Antarctic notothenioid fish. BMC Evol Biol 2018; 18:143. [PMID: 30231868 PMCID: PMC6146603 DOI: 10.1186/s12862-018-1254-6] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 08/24/2018] [Indexed: 12/02/2022] Open
Abstract
Background Confined within the freezing Southern Ocean, the Antarctic notothenioids have evolved to become both cold adapted and cold specialized. A marked signature of cold specialization is an apparent loss of the cellular heat shock response (HSR). As the HSR has been examined in very few notothenioid species to-date, it remains unknown whether HSR loss pervades the Antarctic radiation, or whether the broader cellular responses to heat stress has sustained similar loss. Understanding the evolutionary status of these responses in this stenothermal taxon is crucial for evaluating its adaptive potential to ocean warming under climate change. Results In this study, we used an acute heat stress protocol followed by RNA-Seq analyses to study the evolution of cellular-wide transcriptional responses to heat stress across three select notothenioid lineages - the basal temperate and nearest non-Antarctic sister species Eleginops maclovinus serving as ancestral proxy, the cryopelagic Pagothenia borchgrevinki and the icefish Chionodraco rastrospinosus representing cold-adapted red-blooded and hemoglobinless Antarctic notothenioids respectively. E. maclovinus displayed robust cellular stress responses including the ER Unfolded Protein Response and the cytosolic HSR, cementing the HSR as a plesiomorphy that preceded Antarctic notothenioid radiation. While the transcriptional response to heat stress was minimal in P. borchgrevinki, C. rastrospinosus exhibited robust responses in the broader cellular networks especially in inflammatory responses despite lacking the classic HSR and UPR. Conclusion The disparate patterns observed in these two archetypal Antarctic species indicate the evolutionary status in cellular ability to mitigate acute heat stress varies even among Antarctic lineages, which may affect their adaptive potential in coping with a warming world. Electronic supplementary material The online version of this article (10.1186/s12862-018-1254-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Kevin T Bilyk
- Department of Biology, Western Kentucky University, 1906 College Heights Blvd, Bowling Green, KY, 42101, USA. .,School of Integrative Biology, University of Illinois, Urbana-Champaign, USA.
| | - Luis Vargas-Chacoff
- Instituto de Ciencias Marinas y Limnológicas, Laboratorio de Fisiología de Peces, Centro Fondap de Investigación de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile
| | - C-H Christina Cheng
- School of Integrative Biology, University of Illinois, Urbana-Champaign, USA
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22
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O'Brien KM, Rix AS, Egginton S, Farrell AP, Crockett EL, Schlauch K, Woolsey R, Hoffman M, Merriman S. Cardiac mitochondrial metabolism may contribute to differences in thermal tolerance of red- and white-blooded Antarctic notothenioid fishes. J Exp Biol 2018; 221:jeb177816. [PMID: 29895681 PMCID: PMC6104818 DOI: 10.1242/jeb.177816] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Accepted: 06/04/2018] [Indexed: 12/18/2022]
Abstract
Studies in temperate fishes provide evidence that cardiac mitochondrial function and the capacity to fuel cardiac work contribute to thermal tolerance. Here, we tested the hypothesis that decreased cardiac aerobic metabolic capacity contributes to the lower thermal tolerance of the haemoglobinless Antarctic icefish, Chaenocephalus aceratus, compared with that of the red-blooded Antarctic species, Notothenia coriiceps. Maximal activities of citrate synthase (CS) and lactate dehydrogenase (LDH), respiration rates of isolated mitochondria, adenylate levels and changes in mitochondrial protein expression were quantified from hearts of animals held at ambient temperature or exposed to their critical thermal maximum (CTmax). Compared with C. aceratus, activity of CS, ATP concentration and energy charge were higher in hearts of N. coriiceps at ambient temperature and CTmax While state 3 mitochondrial respiration rates were not impaired by exposure to CTmax in either species, state 4 rates, indicative of proton leakage, increased following exposure to CTmax in C. aceratus but not N. coriiceps The interactive effect of temperature and species resulted in an increase in antioxidants and aerobic metabolic enzymes in N. coriiceps but not in C. aceratus Together, our results support the hypothesis that the lower aerobic metabolic capacity of C. aceratus hearts contributes to its low thermal tolerance.
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Affiliation(s)
- Kristin M O'Brien
- Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
| | - Anna S Rix
- Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
| | - Stuart Egginton
- School of Biomedical Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Anthony P Farrell
- Department of Zoology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
| | | | - Karen Schlauch
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, NV 89557, USA
| | - Rebekah Woolsey
- Nevada Proteomics Center, University of Nevada, Reno, NV 89557, USA
| | - Megan Hoffman
- Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
| | - Sean Merriman
- Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
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Malekar VC, Morton JD, Hider RN, Cruickshank RH, Hodge S, Metcalf VJ. Effect of elevated temperature on membrane lipid saturation in Antarctic notothenioid fish. PeerJ 2018; 6:e4765. [PMID: 29796342 PMCID: PMC5961637 DOI: 10.7717/peerj.4765] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Accepted: 04/23/2018] [Indexed: 01/17/2023] Open
Abstract
Homeoviscous adaptation (HVA) is a key cellular response by which fish protect their membranes against thermal stress. We investigated evolutionary HVA (long time scale) in Antarctic and non-Antarctic fish. Membrane lipid composition was determined for four Perciformes fish: two closely related Antarctic notothenioid species (Trematomus bernacchii and Pagothenia borchgrevinki); a diversified related notothenioid Antarctic icefish (Chionodraco hamatus); and a New Zealand species (Notolabrus celidotus). The membrane lipid compositions were consistent across the three Antarctic species and these were significantly different from that of the New Zealand species. Furthermore, acclimatory HVA (short time periods with seasonal changes) was investigated to determine whether stenothermal Antarctic fish, which evolved in the cold, stable environment of the Southern Ocean, have lost the acclimatory capacity to modulate their membrane saturation states, making them vulnerable to anthropogenic global warming. We compared liver membrane lipid composition in two closely related Antarctic fish species acclimated at 0 °C (control temperature), 4 °C for a period of 14 days in T. bernacchii and 28 days for P. borchgrevinki, and 6 °C for 7 days in both species. Thermal acclimation at 4 °C did not result in changed membrane saturation states in either Antarctic species. Despite this, membrane functions were not compromised, as indicated by declining serum osmolality, implying positive compensation by enhanced hypo-osmoregulation. Increasing the temperature to 6 °C did not change the membrane lipids of P. borchgrevinki. However, in T. bernacchii, thermal acclimation at 6 °C resulted in an increase of membrane saturated fatty acids and a decline in unsaturated fatty acids. This is the first study to show a homeoviscous response to higher temperatures in an Antarctic fish, although for only one of the two species examined.
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Affiliation(s)
- Vanita C Malekar
- Department of Wine, Food and Molecular Biosciences, Faculty of Agriculture and Life Sciences, Lincoln University, Christchurch, New Zealand
| | - James D Morton
- Department of Wine, Food and Molecular Biosciences, Faculty of Agriculture and Life Sciences, Lincoln University, Christchurch, New Zealand
| | - Richard N Hider
- Department of Wine, Food and Molecular Biosciences, Faculty of Agriculture and Life Sciences, Lincoln University, Christchurch, New Zealand
| | - Robert H Cruickshank
- Department of Ecology, Faculty of Agriculture and Life Sciences, Lincoln University, Christchurch, New Zealand
| | - Simon Hodge
- Department of Agricultural Sciences, Faculty of Agriculture and Life Sciences, Lincoln University, Christchurch, New Zealand
| | - Victoria J Metcalf
- Office of the Prime Minister's Chief Science Advisor, University of Auckland, Auckland, New Zealand
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O'Brien KM, Crockett EL, Philip J, Oldham CA, Hoffman M, Kuhn DE, Barry R, McLaughlin J. The loss of hemoglobin and myoglobin does not minimize oxidative stress in Antarctic icefishes. ACTA ACUST UNITED AC 2018; 221:jeb.162503. [PMID: 29361578 DOI: 10.1242/jeb.162503] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Accepted: 12/11/2017] [Indexed: 01/07/2023]
Abstract
The unusual pattern of expression of hemoglobin (Hb) and myoglobin (Mb) among Antarctic notothenioid fishes provides an exceptional model system for assessing the impact of these proteins on oxidative stress. We tested the hypothesis that the lack of oxygen-binding proteins may reduce oxidative stress. Levels and activity of pro-oxidants and small-molecule and enzymatic antioxidants, and levels of oxidized lipids and proteins in the liver, oxidative skeletal muscle and heart ventricle were quantified in five species of notothenioid fishes differing in the expression of Hb and Mb. Levels of ubiquitinated proteins and rates of protein degradation by the 20S proteasome were also quantified. Although levels of oxidized proteins and lipids, ubiquitinated proteins, and antioxidants were higher in red-blooded fishes than in Hb-less icefishes in some tissues, this pattern did not persist across all tissues. Expression of Mb was not associated with oxidative damage in the heart ventricle, whereas the activity of citrate synthase and the contents of heme were positively correlated with oxidative damage in most tissues. Despite some tissue differences in levels of protein carbonyls among species, rates of degradation by the 20S proteasome were not markedly different, suggesting either alternative pathways for eliminating oxidized proteins or that redox tone varies among species. Together, our data indicate that the loss of Hb and Mb does not correspond with a clear pattern of either reduced oxidative defense or oxidative damage.
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Affiliation(s)
- Kristin M O'Brien
- Institute of Arctic Biology, University of Alaska, Fairbanks, Alaska, 99775, USA
| | | | - Jacques Philip
- Center for Alaska Native Health Research, University of Alaska, Fairbanks, Alaska, 99775, USA
| | - Corey A Oldham
- Institute of Arctic Biology, University of Alaska, Fairbanks, Alaska, 99775, USA
| | - Megan Hoffman
- Institute of Arctic Biology, University of Alaska, Fairbanks, Alaska, 99775, USA
| | - Donald E Kuhn
- Department of Biological Sciences, Ohio University, Athens, Ohio, 45701, USA
| | - Ronald Barry
- Department of Mathematics and Statistics, University of Alaska, Fairbanks, Alaska, 99775, USA
| | - Jessica McLaughlin
- Institute of Arctic Biology, University of Alaska, Fairbanks, Alaska, 99775, USA
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Rebelein A, Pörtner HO, Bock C. Untargeted metabolic profiling reveals distinct patterns of thermal sensitivity in two related notothenioids. Comp Biochem Physiol A Mol Integr Physiol 2017; 217:43-54. [PMID: 29288768 DOI: 10.1016/j.cbpa.2017.12.012] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 12/08/2017] [Accepted: 12/21/2017] [Indexed: 01/02/2023]
Abstract
Antarctic marine ectothermal animals may be affected more than temperate species by rising temperatures due to ongoing climate change. Their specialisation on stable cold temperatures makes them vulnerable to even small degrees of warming. Thus, addressing the impacts of warming on Antarctic organisms and identifying their potentially limited capacities to respond is of interest. The objective of the study was to determine changes in metabolite profiles related to temperature acclimation. In a long-term experiment adult fish of two Antarctic sister species Notothenia rossii and Notothenia coriiceps were acclimated to 0°C and 5°C for three months. Impacts and indicators of acclimation at the cellular level were determined from metabolite profiles quantified in gill tissue extracts using nuclear magnetic resonance (NMR) spectroscopy. Furthermore, the metabolite profiles of the two con-generic species were compared. NMR spectroscopy identified 37 metabolites that were present in each sample, but varied in their absolute concentration between species and between treatments. A decrease in amino acid levels indicated an increased amino acid catabolism after incubation to 5°C. In addition, long term warming initiated shifts in organic osmolyte concentrations and modified membrane structure observed by altered levels of phospholipid compounds. Differences in the metabolite profile between the two notothenioid species can be related to their divergent lifestyles, especially their different rates of motor activity. Increased levels of the Krebs cycle intermediate succinate and a higher reduction of amino acid concentrations in warm-acclimated N. rossii showed that N. rossii is more affected by warming than N. coriiceps.
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Affiliation(s)
- Anja Rebelein
- Alfred-Wegener-Institute Helmholtz-Centre for Polar and Marine Research, Integrative Ecophysiology, Am Handelshafen 12, 27570 Bremerhaven, Germany
| | - Hans-Otto Pörtner
- Alfred-Wegener-Institute Helmholtz-Centre for Polar and Marine Research, Integrative Ecophysiology, Am Handelshafen 12, 27570 Bremerhaven, Germany; University of Bremen, 28359 Bremen, Germany
| | - Christian Bock
- Alfred-Wegener-Institute Helmholtz-Centre for Polar and Marine Research, Integrative Ecophysiology, Am Handelshafen 12, 27570 Bremerhaven, Germany.
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26
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Corsolini S, Ademollo N, Martellini T, Randazzo D, Vacchi M, Cincinelli A. Legacy persistent organic pollutants including PBDEs in the trophic web of the Ross Sea (Antarctica). Chemosphere 2017; 185:699-708. [PMID: 28732330 DOI: 10.1016/j.chemosphere.2017.07.054] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 06/29/2017] [Accepted: 07/11/2017] [Indexed: 05/22/2023]
Abstract
The ecological features of the Ross Sea trophic web are peculiar and different from other polar food webs, with respect to the use of habitat and species interactions; due to its ecosystem integrity, it is the world's largest Marine Protected Area, established in 2016. Polar organisms are reported to bioaccumulate lipophilic contaminant, viz persistent organic pollutants (POPs). Legacy POPs and flame retardants (polybrominated diphenyl ethers, PBDEs) were studied in key species of the Ross Sea (Euphausia superba, Pleuragramma antarctica) and their predators (Dissostichus mawsoni, Pygoscelis adeliae, Aptenodytes forsteri, Catharacta maccormicki, Leptonychotes weddellii). Gaschromatography revealed the presence of PCBs, HCB, DDTs, PBDEs in most of the samples; HCHs, dieldrin, Eldrin, non-ortho PCBs, PCDDs, PCDFs were detected only in some species. The average ∑PBDEs was 0.19-1.35 pg/g wet wt in the key-species and one-two order of magnitude higher in the predators. Penguins and skuas from an area where a long-term field camp is located showed higher BDE concentrations. The ΣDDTs was higher in the Antarctic toothfish (20 ± 6.73 ng/g wet wt) and in the South Polar skua (5.911 ± 3.425 ng/g wet wt). The TEQs were evaluated and the highest concentration was found in the Weddell seal, due to PCB169, 1,2,3,4,7,8-HxCDF, and 2,3,4,6,7,8-HxCDF. There was no significant relationship between the trophic level and the POP concentrations. Although low concentrations, organisms of the Ross Sea trophic web should be further studied: lack of information on some ecotoxicological features and human impacts including global change may distress the ecosystem with unpredictable effects.
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Affiliation(s)
- Simonetta Corsolini
- University of Siena, Department of Physics, Earth and Environmental Sciences, Via Mattioli, 4, 53100 Siena, Italy.
| | - Nicoletta Ademollo
- Water Research Institute (IRSA), National Research Council, Via Salaria Km 29.300, 00015 Monterotondo Scalo (RM), Italy
| | - Tania Martellini
- Department of Chemistry "Ugo Schiff", University of Florence, 50019 Sesto Fiorentino (Florence), Italy
| | - Demetrio Randazzo
- Department of Chemistry "Ugo Schiff", University of Florence, 50019 Sesto Fiorentino (Florence), Italy
| | - Marino Vacchi
- Institute of Marine Sciences (ISMAR), National Research Council, Via De Marini 6, 16149 Genova, Italy
| | - Alessandra Cincinelli
- Department of Chemistry "Ugo Schiff", University of Florence, 50019 Sesto Fiorentino (Florence), Italy
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27
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Gogliettino M, Cocca E, Fusco C, Agrillo B, Riccio A, Balestrieri M, Facchiano A, Pepe A, Palmieri G. Unusual Antioxidant Properties of 26S Proteasome Isolated from Cold-Adapted Organisms. Int J Mol Sci 2017; 18:E1605. [PMID: 28757562 DOI: 10.3390/ijms18081605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Revised: 07/10/2017] [Accepted: 07/18/2017] [Indexed: 11/17/2022] Open
Abstract
The oxidative challenge represents an important factor affecting the adaptive strategies in Antarctic fish, but their impact on the protein degradation machinery still remains unclear. The previous analysis of the first 26S proteasome from the Antarctic red-blooded fish Trematomus bernacchii, evidenced improved antioxidant functions necessary to counteract the environmental pro-oxidant conditions. The purpose of this work was to carry out a study on 26S proteasomes from the temperate red-blooded Dicenthrarcus labrax and the icefish Chionodraco hamatus in comparison with the isoform already described from T. bernacchii, to better elucidate the cold-adapted physiological functions of this complex. Therefore, the 26S isoforms were isolated and the complementary DNAs (cDNAs) codifying the catalytic subunits were cloned. The biochemical characterization of Antarctic 26S proteasomes revealed their significantly higher structural stability and resistance to H2O2 with respect to that of the temperate counterpart, as also suggested by a comparative modeling analysis of the catalytic subunits. Moreover, in contrast to that observed in T. bernacchii, the 26S systems from C. hamatus and D. labrax were incapable to hydrolyze oxidized proteins in a ubiquitin-independent manner. Therefore, the ‘uncommon’ properties displayed by the Antarctic 26S proteasomes can mirror the impact exercised by evolutionary pressure in response to richly oxygenated environments.
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28
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Postlethwait JH, Yan YL, Desvignes T, Allard C, Titus T, Le François NR, Detrich HW. Embryogenesis and early skeletogenesis in the antarctic bullhead notothen, Notothenia coriiceps. Dev Dyn 2016; 245:1066-1080. [PMID: 27507212 DOI: 10.1002/dvdy.24437] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 07/01/2016] [Accepted: 07/04/2016] [Indexed: 11/11/2022] Open
Abstract
BACKGROUND Environmental temperature influences rates of embryonic development, but a detailed staging series for vertebrate embryos developing in the subzero cold of Antarctic waters is not yet available from fertilization to hatching. Given projected warming of the Southern Ocean, it is imperative to establish a baseline to evaluate potential effects of changing climate on fish developmental dynamics. RESULTS We studied the Bullhead notothen (Notothenia coriiceps), a notothenioid fish inhabiting waters between -1.9 and +2 °C. In vitro fertilization produced embryos that progressed through cleavage, epiboly, gastrulation, segmentation, organogenesis, and hatching. We compared morphogenesis spatially and temporally to Zebrafish and medaka. Experimental animals hatched after about 6 months to early larval stages. To help understand skeletogenesis, we analyzed late embryos for expression of sox9 and runx2, which regulate chondrogenesis, osteogenesis, and eye development. Results revealed that, despite their prolonged developmental time course, N. coriiceps embryos developed similarly to those of other teleosts with large yolk cells. CONCLUSIONS Our studies set the stage for future molecular analyses of development in these extremophile fish. Results provide a foundation for understanding the impact of ocean warming on embryonic development and larval recruitment of notothenioid fish, which are key factors in the marine trophic system. Developmental Dynamics 245:1066-1080, 2016. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
| | - Yi-Lin Yan
- Institute of Neuroscience, University of Oregon, Eugene, Oregon
| | | | - Corey Allard
- Biodôme de Montréal, Division des collections vivantes et recherche, Montréal, Quebec, Canada
| | - Tom Titus
- Institute of Neuroscience, University of Oregon, Eugene, Oregon
| | - Nathalie R Le François
- Department of Marine and Environmental Sciences, Marine Science Center, Northeastern University, Nahant, Massachusetts
| | - H William Detrich
- Biodôme de Montréal, Division des collections vivantes et recherche, Montréal, Quebec, Canada
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29
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Ahn DH, Kang S, Park H. Transcriptome analysis of immune response genes induced by pathogen agonists in the Antarctic bullhead notothen Notothenia coriiceps. Fish Shellfish Immunol 2016; 55:315-322. [PMID: 27276114 DOI: 10.1016/j.fsi.2016.06.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 05/17/2016] [Accepted: 06/04/2016] [Indexed: 06/06/2023]
Abstract
Fish are a representative population of lower vertebrates that serve as an essential link to early vertebrate evolution, and this has fueled academic interest in studying ancient vertebrate immune defense mechanisms in teleosts. Notothenia coriiceps, a typical Antarctic notothenioid teleost, has evolved to adapt to the cold and thermally stable Antarctic sea. In this study, we examined adaptive signaling pathways and immune responses to bacterial and viral pathogenic exposure in N. coriiceps. Using RNA sequencing, we investigated transcriptional differences in the liver tissues of N. coriiceps challenged with two pathogen-mimicking agonists, a bacterial ligand (heat-killed Escherichia coli, HKEB) and a viral ligand (polyinosinic:polycytidylic acid, Poly I:C). We found that 567 unique genes were up-regulated two-fold in the HKEB-exposed group, whereas 392 unique genes, including 124 immune-relevant genes, were up-regulated two-fold in the Poly I:C-exposed group. A KEGG pathway analysis of the 124 immune-relevant genes revealed that they exhibited major features of antigen processing and presentation bacterial ligand exposure, but they were down-regulated after viral ligand exposure. A quantitative real time RT-PCR analysis revealed that TNFα and TNF2, major inducers of apoptosis, were highly up-regulated after exposure to the viral ligand but not the bacterial ligand. The results suggest that the bacterial and viral ligands up-regulate inducers of different immune mechanisms in N. coriiceps liver tissue. N. coriiceps has an immune response defense strategy that uses antigen presentation against bacterial infection, but it may use a different defense, such as TNF-mediated apoptosis, against viral infection. The specific immune responses of N. coriiceps may be adaptations to the Antarctic environment and pathogens. These results will help define the characteristics of Antarctic fish and increase our understanding of their immune response mechanisms.
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Affiliation(s)
- Do-Hwan Ahn
- Division of Polar Life Sciences, Korea Polar Research Institute, Yeonsu-gu, Incheon, 21990, South Korea
| | - Seunghyun Kang
- Division of Polar Life Sciences, Korea Polar Research Institute, Yeonsu-gu, Incheon, 21990, South Korea
| | - Hyun Park
- Division of Polar Life Sciences, Korea Polar Research Institute, Yeonsu-gu, Incheon, 21990, South Korea; Polar Sciences, University of Science & Technology, Yuseong-gu, Daejeon, 34113, South Korea.
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Papetti C, Lucassen M, Pörtner HO. Integrated studies of organismal plasticity through physiological and transcriptomic approaches: examples from marine polar regions. Brief Funct Genomics 2016; 15:365-72. [PMID: 27345433 DOI: 10.1093/bfgp/elw024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Transcriptomic methods are now widely used in functional genomic research. The vast amount of information received from these studies comes along with the challenge of developing a precise picture of the functional consequences and the characteristic regulatory mechanisms. Here we assess recent studies in marine species and their adaptation to polar (and seasonal) cold and explore how they have been able to draw reliable conclusions from transcriptomic patterns on functional consequences in the organisms. Our analysis indicates that the interpretation of transcriptomic data suffers from insufficient understanding of the consequences for whole organism performance and fitness and comes with the risk of supporting only preliminary and superficial statements.We propose that the functional understanding of transcriptomic data may be improved by their tighter integration into overarching physiological concepts that support the more specific interpretation of the 'omics' data and, at the same time, can be developed further through embedding the transcriptomic phenomena observed. Such possibilities have not been fully exploited.In the context of thermal adaptation and limitation, we explore preliminary evidence that the concept of oxygen and capacity limited thermal tolerance (OCLTT) may provide sufficient complexity to guide the integration of such data and the development of associated functional hypotheses. At the same time, we identify a lack of methodological approaches linking genes and function to higher levels of integration, in terms of organism and ecosystem functioning, at temporal and geographical scales, to support more reliable conclusions and be predictive with respect to the effects of global changes.
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Wintle NJP, Sleadd IM, Gundersen DT, Kohl K, Buckley BA. Total Mercury in Six Antarctic Notothenioid Fishes. Bull Environ Contam Toxicol 2015; 95:557-560. [PMID: 26155962 DOI: 10.1007/s00128-015-1594-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2015] [Accepted: 06/30/2015] [Indexed: 06/04/2023]
Abstract
We analyzed white muscle samples from six species of Antarctic fish (suborder Notothenioidei) collected in 2011 from McMurdo Sound, Ross Sea, Antarctica, to assess levels of total mercury (THg). Gymnodraco acuticeps and Trematomus bernacchii exhibited the highest concentrations of THg followed by Trematomus pennellii, Trematomus nicolai, Trematomus newnesi and Pagothenia borchgrevinki, (71.3, 53.9±32.1, 45.8±27.3, 37.2±18.6, 35.7±23.6, and 21.9±2.8 ng/g wet weight, respectively). The results from this study suggest that THg has the potential to bioaccumulate from various marine Antarctic ecosystems into biota.
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Affiliation(s)
| | - Isaac M Sleadd
- Department of Biology, University of Northern Alabama, Florence, AL, 35632, USA
| | - Deke T Gundersen
- Department of Environmental Science, Pacific University, Forest Grove, OR, 97116, USA
| | - Kristina Kohl
- Department of Environmental Science, Pacific University, Forest Grove, OR, 97116, USA
| | - Bradley A Buckley
- Department of Biology, Center for Life in Extreme Environments, Portland State University, Portland, OR, 97207, USA
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Mattiucci S, Cipriani P, Paoletti M, Nardi V, Santoro M, Bellisario B, Nascetti G. Temporal stability of parasite distribution and genetic variability values of Contracaecum osculatum sp. D and C. osculatum sp. E (Nematoda: Anisakidae) from fish of the Ross Sea (Antarctica). Int J Parasitol Parasites Wildl 2015; 4:356-67. [PMID: 26767164 PMCID: PMC4683570 DOI: 10.1016/j.ijppaw.2015.10.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2015] [Revised: 10/07/2015] [Accepted: 10/07/2015] [Indexed: 11/06/2022]
Abstract
The Ross Sea, Eastern Antarctica, is considered a “pristine ecosystem” and a biodiversity “hotspot” scarcely impacted by humans. The sibling species Contracaecum osculatum sp. D and C. osculatum sp. E are anisakid parasites embedded in the natural Antarctic marine ecosystem. Aims of this study were to: identify the larvae of C. osculatum (s.l.) recovered in fish hosts during the XXVII Italian Expedition to Antarctica (2011–2012); perform a comparative analysis of the contemporary parasitic load and genetic variability estimates of C. osculatum sp. D and C. osculatum sp. E with respect to samples collected during the expedition of 1993–1994; to provide ecological data on these parasites. 200 fish specimens (Chionodraco hamatus, Trematomus bernacchii, Trematomus hansoni, Trematomus newnesi) were analysed for Contracaecum sp. larvae, identified at species level by allozyme diagnostic markers and sequences analysis of the mtDNA cox2 gene. Statistically significant differences were found between the occurrence of C. osculatum sp. D and C. osculatum sp. E in different fish species. C. osculatum sp. E was more prevalent in T. bernacchii; while, a higher percentage of C. osculatum sp. D occurred in Ch. hamatus and T. hansoni. The two species also showed differences in the host infection site: C. osculatum sp. D showed higher percentage of infection in the fish liver. High genetic variability values at both nuclear and mitochondrial level were found in the two species in both sampling periods. The parasitic infection levels by C. osculatum sp. D and sp. E and their estimates of genetic variability showed no statistically significant variation over a temporal scale (2012 versus 1994). This suggests that the low habitat disturbance of the Antarctic region permits the maintenance of stable ecosystem trophic webs, which contributes to the maintenance of a large populations of anisakid nematodes with high genetic variability. Temporal stability of infection values of two anisakid species in Antarctic fish. Temporal stability of genetic variability in two Antarctic anisakid parasites. Differential distribution of two Contracaecum species in Antarctic fish. Different host localization of the two species of Contracaecum in Antarctic fish.
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Affiliation(s)
- Simonetta Mattiucci
- Department of Public Health and Infectious Diseases, Section of Parasitology, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy
| | - Paolo Cipriani
- Department of Public Health and Infectious Diseases, Section of Parasitology, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy; Department of Ecological and Biological Sciences, Tuscia University, Viterbo, 01100, Italy
| | - Michela Paoletti
- Department of Public Health and Infectious Diseases, Section of Parasitology, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy; Department of Ecological and Biological Sciences, Tuscia University, Viterbo, 01100, Italy
| | - Valentina Nardi
- Department of Public Health and Infectious Diseases, Section of Parasitology, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy
| | - Mario Santoro
- Istituto Zooprofilattico Sperimentale del Mezzogiorno, Via Salute, 2, 80055, Portici (Naples), Italy
| | - Bruno Bellisario
- Department of Ecological and Biological Sciences, Tuscia University, Viterbo, 01100, Italy
| | - Giuseppe Nascetti
- Department of Ecological and Biological Sciences, Tuscia University, Viterbo, 01100, Italy
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Oh JS, Kang S, Ahn DH, Kim MK, Lee H, Chi YM, Park H. Complete mitochondrial genome of the Antarctic dragonfish, Parachaenichthys charcoti (Notothenioidei: Bathydraconidae). Mitochondrial DNA A DNA Mapp Seq Anal 2015; 27:3151-2. [PMID: 25707408 DOI: 10.3109/19401736.2015.1007309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The complete mitochondrial genome of the Antarctic dragonfish, Parachaenichthys charcoti (Vaillant, 1906), is described, representing the first complete mitochondrial genome sequence of the family Bathydraconidae. The mitochondrial genome is 18,202 base pairs in length and encodes 13 protein-coding genes, 23 tRNAs, 2 rRNAs and 2 control regions. The overall base composition is A: 25.8%, T: 25.3%, G: 17.9% and C: 31.0%, with an A:T content of 51.1%. The complete mitochondrial genome sequence will be useful for phylogenetic, evolutionary and functional studies of Antarctic Notothenioids.
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Affiliation(s)
- Jae Soon Oh
- a Division of Biotechnology , College of Life Sciences, Korea University , Seoul , Republic of Korea
| | - Seunghyun Kang
- b Division of Polar Life Sciences , Korea Polar Research Institute , Yeonsu-gu , Incheon , South Korea , and
| | - Do Hwan Ahn
- b Division of Polar Life Sciences , Korea Polar Research Institute , Yeonsu-gu , Incheon , South Korea , and.,c Department of Polar Sciences , University of Science & Technology , Yuseong-gu , Daejeon , Korea
| | - Mi-Kyeong Kim
- b Division of Polar Life Sciences , Korea Polar Research Institute , Yeonsu-gu , Incheon , South Korea , and
| | - Hyoungseok Lee
- b Division of Polar Life Sciences , Korea Polar Research Institute , Yeonsu-gu , Incheon , South Korea , and
| | - Young Min Chi
- a Division of Biotechnology , College of Life Sciences, Korea University , Seoul , Republic of Korea
| | - Hyun Park
- b Division of Polar Life Sciences , Korea Polar Research Institute , Yeonsu-gu , Incheon , South Korea , and.,c Department of Polar Sciences , University of Science & Technology , Yuseong-gu , Daejeon , Korea
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Cocca E, Petraccioli A, Morescalchi MA, Odierna G, Capriglione T. Laser microdissection-based analysis of the Y sex chromosome of the Antarctic fish Chionodracohamatus (Notothenioidei, Channichthyidae). Comp Cytogenet 2015; 9:1-15. [PMID: 25893071 PMCID: PMC4387377 DOI: 10.3897/compcytogen.v9i1.8731] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2014] [Accepted: 12/09/2014] [Indexed: 05/16/2023]
Abstract
Microdissection, DOP-PCR amplification and microcloning were used to study the large Y chromosome of Chionodracohamatus, an Antarctic fish belonging to the Notothenioidei, the dominant component of the Southern Ocean fauna. The species has evolved a multiple sex chromosome system with digametic males showing an X1YX2 karyotype and females an X1X1X2X2 karyotype. Fluorescence in situ hybridization, performed with a painting probe made from microdissected Y chromosomes, allowed a deeper insight on the chromosomal rearrangement, which underpinned the fusion event that generated the Y. Then, we used a DNA library established by microdissection and microcloning of the whole Y chromosome of Chionodracohamatus for searching sex-linked sequences. One clone provided preliminary information on the presence on the Y chromosome of the CHD1 gene homologue, which is sex-linked in birds but in no other vertebrates. Several clones from the Y-chromosome mini-library contained microsatellites and transposable elements, one of which mapped to the q arm putative fusion region of the Y chromosome. The findings confirm that interspersed repetitive sequences might have fostered chromosome rearrangements and the emergence of the Y chromosome in Chionodracohamatus. Detection of the CHD1 gene in the Y sex-determining region could be a classical example of convergent evolution in action.
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Affiliation(s)
- Ennio Cocca
- Istituto di Bioscienze e Biorisorse, CNR, via P. Castellino 111, 80131 Napoli, Italy
| | - Agnese Petraccioli
- Dipartimento di Biologia, Università di Napoli Federico II, Complesso Universitario Monte S. Angelo, via Cinthia, 80126 Napoli, Italy
| | | | - Gaetano Odierna
- Dipartimento di Biologia, Università di Napoli Federico II, Complesso Universitario Monte S. Angelo, via Cinthia, 80126 Napoli, Italy
| | - Teresa Capriglione
- Dipartimento di Biologia, Università di Napoli Federico II, Complesso Universitario Monte S. Angelo, via Cinthia, 80126 Napoli, Italy
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O'Brien KM, Mueller IA, Orczewska JI, Dullen KR, Ortego M. Hearts of some Antarctic fishes lack mitochondrial creatine kinase. Comp Biochem Physiol A Mol Integr Physiol 2014; 178:30-6. [PMID: 25151023 DOI: 10.1016/j.cbpa.2014.08.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2014] [Revised: 08/12/2014] [Accepted: 08/13/2014] [Indexed: 11/23/2022]
Abstract
Creatine kinase (CK; EC 2.7.3.2) functions as a spatial and temporal energy buffer, dampening fluctuations in ATP levels as ATP supply and demand change. There are four CK isoforms in mammals, two cytosolic isoforms (muscle [M-CK] and brain [B-CK]), and two mitochondrial isoforms (ubiquitous [uMtCK] and sarcomeric [sMtCK]). Mammalian oxidative muscle couples expression of sMtCK with M-CK, creating an energy shuttle between mitochondria and myofibrils. We hypothesized that the expression pattern and activity of CK would differ between hearts of red- and white-blooded Antarctic notothenioid fishes due to their striking differences in cardiac ultrastructure. Hearts of white-blooded icefishes (family Channichthyidae) have significantly higher mitochondrial densities compared to red-blooded species, decreasing the diffusion distance for ATP between mitochondria and myofibrils and potentially minimizing the need for CK. The distribution of CK isoforms was evaluated using western blotting and maximal activity of CK was measured in mitochondrial and cytosolic fractions and tissue homogenates of heart ventricles of red- and white-blooded notothenioids. Transcript abundance of sMtCK and M-CK was also quantified. Overall, CK activity is similar between hearts of red- and white-blooded notothenioids but hearts of icefishes lack MtCK and have higher activities of M-CK in the cytosol compared to red-blooded fishes. The absence of MtCK may compromise cardiac function under stressful conditions when ATP supply becomes limiting.
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Capriglione T, De Paolo S, Cocca E. Helinoto, a Helitron2 transposon from the icefish Chionodraco hamatus, contains a region with three deubiquitinase-like domains that exhibit transcriptional activity. Comp Biochem Physiol Part D Genomics Proteomics 2014; 11:49-58. [PMID: 25178533 DOI: 10.1016/j.cbd.2014.07.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2014] [Revised: 07/29/2014] [Accepted: 07/30/2014] [Indexed: 11/24/2022]
Abstract
Transposable elements have accompanied the evolution of the eukaryotic genome for millions of years. The recently discovered Helitron order (class II, subclass 2 single-strand DNA transposons) is common in eukaryotes and seems to play a highly active role in genome reshuffling. This study provides novel insights into the characteristics of Helinoto, a helitron isolated in the genome of the Antarctic fish Chionodraco hamatus. In particular, investigation of the structure of its 5' and 3' ends, which are involved in the transposition process, enabled identification of the characteristic motifs of the Helitron2 group. Moreover, identification of a deubiquitinating protease domain in the region upstream two consecutive OTU domains extended and strengthened the "deubiquitinase" character of the N-terminal portion of Helinoto. Finally, Helinoto transcriptional activity was detected in several C. hamatus tissues. Taken together, these data are particularly intriguing because they document high transcription levels for genes involved in ubiquitination, which ensures protein homeostasis in the extreme Antarctic environment.
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Oellermann M, Pörtner HO, Mark FC. Simultaneous high-resolution pH and spectrophotometric recordings of oxygen binding in blood microvolumes. ACTA ACUST UNITED AC 2014; 217:1430-6. [PMID: 24436387 DOI: 10.1242/jeb.092726] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Oxygen equilibrium curves have been widely used to understand oxygen transport in numerous organisms. A major challenge has been to monitor oxygen binding characteristics and concomitant pH changes as they occur in vivo, in limited sample volumes. Here we report a technique allowing highly resolved and simultaneous monitoring of pH and blood pigment saturation in minute blood volumes. We equipped a gas diffusion chamber with a broad-range fibre-optic spectrophotometer and a micro-pH optode and recorded changes of pigment oxygenation along oxygen partial pressure (PO2) and pH gradients to test the setup. Oxygen binding parameters derived from measurements in only 15 μl of haemolymph from the cephalopod Octopus vulgaris showed low instrumental error (0.93%) and good agreement with published data. Broad-range spectra, each resolving 2048 data points, provided detailed insight into the complex absorbance characteristics of diverse blood types. After consideration of photobleaching and intrinsic fluorescence, pH optodes yielded accurate recordings and resolved a sigmoidal shift of 0.03 pH units in response to changing PO2 from 0 to 21 kPa. Highly resolved continuous recordings along pH gradients conformed to stepwise measurements at low rates of pH changes. In this study we showed that a diffusion chamber upgraded with a broad-range spectrophotometer and an optical pH sensor accurately characterizes oxygen binding with minimal sample consumption and manipulation. We conclude that the modified diffusion chamber is highly suitable for experimental biologists who demand high flexibility, detailed insight into oxygen binding as well as experimental and biological accuracy combined in a single setup.
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Affiliation(s)
- Michael Oellermann
- Alfred Wegener Institute for Polar and Marine Research, 27570 Bremerhaven, Germany
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Romano N, Ceccarelli G, Caprera C, Caccia E, Baldassini MR, Marino G. Apoptosis in thymus of teleost fish. Fish Shellfish Immunol 2013; 35:589-594. [PMID: 23639932 DOI: 10.1016/j.fsi.2013.04.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2012] [Revised: 03/07/2013] [Accepted: 04/04/2013] [Indexed: 06/02/2023]
Abstract
The presence and distribution of apoptotic cells during thymus development and in adult were studied by in situ end-labelling of fragmented DNA in three temperate species carp (Cyprinus carpio), sea bass (Dicentrarchus labrax) and dusky grouper (Epinephelus marginatus) and in the adult thymus of three Antarctic species belonging to the genus Trematomus spp. During thymus development some few isolated apoptotic cell (AC) firstly appeared in the central-external part of the organ (carp: 5 days ph; sea bass: 35 days ph grouper: 43 days ph). Initially the cells were isolated and then increased in number and aggregated in small groups in the outer-cortical region of the thymus larvae. The high density of apoptotic cells was observed in the junction between cortex and medulla from its appearance (border between cortex and medulla, BCM). ACs decreased in number in juveniles and adult as well as the ACs average diameter. In late juveniles and in adulthood, the apoptosis were restricted to the cortex. In Antarctic species the thymus is highly adapted to low temperature (high vascularisation to effort the circulation of glycoproteins enriched plasma and strongly compact parenchyma). The apoptosis process was more extended (4-7 fold) as compare with the thymus of temperate species, even if the distribution of ACs was similar in all examined species. Data suggested a common process of T lymphocyte negative-selection in BCM of thymus during the ontogeny. The selection process seems to be still active in adult polar fish, but restricted mainly in the cortex zone.
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Affiliation(s)
- Nicla Romano
- Department of Ecology and Biology, Tuscia University, Viterbo, Italy.
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