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COOK GEOFFREYM, GRUEN ANNAE, MORRIS JOHN, PANKEY MSABRINA, SENATORE ADRIANO, KATZ PAULS, WATSON WINSORH, NEWCOMB JAMESM. Sequences of Circadian Clock Proteins in the Nudibranch Molluscs Hermissenda crassicornis, Melibe leonina, and Tritonia diomedea. Biol Bull 2018; 234:207-218. [PMID: 29949437 PMCID: PMC6180908 DOI: 10.1086/698467] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
While much is known about the genes and proteins that make up the circadian clocks in vertebrates and several arthropod species, much less is known about the clock genes in many other invertebrates, including nudibranchs. The goal of this project was to identify the RNA and protein products of putative clock genes in the central nervous system of three nudibranchs, Hermissenda crassicornis, Melibe leonina, and Tritonia diomedea. Using previously published transcriptomes (Hermissenda and Tritonia) and a new transcriptome (Melibe), we identified nudibranch orthologs for the products of five canonical clock genes: brain and muscle aryl hydrocarbon receptor nuclear translocator like protein 1, circadian locomotor output cycles kaput, non-photoreceptive cryptochrome, period, and timeless. Additionally, orthologous sequences for the products of five related genes-aryl hydrocarbon receptor nuclear translocator like, photoreceptive cryptochrome, cryptochrome DASH, 6-4 photolyase, and timeout-were determined. Phylogenetic analyses confirmed that the nudibranch proteins were most closely related to known orthologs in related invertebrates, such as oysters and annelids. In general, the nudibranch clock proteins shared greater sequence similarity with Mus musculus orthologs than Drosophila melanogaster orthologs, which is consistent with the closer phylogenetic relationships recovered between lophotrochozoan and vertebrate orthologs. The suite of clock-related genes in nudibranchs includes both photoreceptive and non-photoreceptive cryptochromes, as well as timeout and possibly timeless. Therefore, the nudibranch clock may resemble the one exhibited in mammals, or possibly even in non-drosopholid insects and oysters. The latter would be evidence supporting this as the ancestral clock for bilaterians.
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Key Words
- ARNTL, aryl hydrocarbon receptor nuclear translocator like
- BMAL1, brain and muscle aryl hydrocarbon receptor nuclear translocator like protein 1
- CLOCK, circadian locomotor output cycles kaput
- CNS, central nervous system
- CRY DASH, cryptochrome DASH
- FAD, flavin adenine dinucleotide
- G+I, gamma-distributed and invariant
- ML, maximum likelihood
- MSA, multiple sequence alignments
- NCBI, National Center for Biotechnology Information
- NPCRY, non-photoreceptive cryptochrome
- PAC, Per-Arnt-Sim-associated C-terminal
- PAS, Per-Arnt-Sim
- PCRY, photoreceptive cryptochrome
- PHR, 6-4 photolyase
- TSA, transcriptome shotgun assembly
- bHLH, basic helix-loop-helix
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Affiliation(s)
- GEOFFREY M. COOK
- Department of Biology and Health Science, New England College, Henniker, New Hampshire 03242
| | - ANNA E. GRUEN
- Department of Biological Sciences, University of New Hampshire, Durham, New Hampshire 03824
| | - JOHN MORRIS
- Department of Biology and Health Science, New England College, Henniker, New Hampshire 03242
| | - M. SABRINA PANKEY
- Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire 03824
| | - ADRIANO SENATORE
- Department of Biology, University of Massachusetts, Amherst, Massachusetts 01003
- Present address: Department of Biology, University of Toronto, Mississauga, Ontario L5L 1C6, Canada
| | - PAUL S. KATZ
- Department of Biology, University of Massachusetts, Amherst, Massachusetts 01003
| | - WINSOR H. WATSON
- Department of Biological Sciences, University of New Hampshire, Durham, New Hampshire 03824
| | - JAMES M. NEWCOMB
- Department of Biology and Health Science, New England College, Henniker, New Hampshire 03242
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van Moorsel D, Hansen J, Havekes B, Scheer FAJL, Jörgensen JA, Hoeks J, Schrauwen-Hinderling VB, Duez H, Lefebvre P, Schaper NC, Hesselink MKC, Staels B, Schrauwen P. Demonstration of a day-night rhythm in human skeletal muscle oxidative capacity. Mol Metab 2016; 5:635-645. [PMID: 27656401 PMCID: PMC5021670 DOI: 10.1016/j.molmet.2016.06.012] [Citation(s) in RCA: 116] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Revised: 06/23/2016] [Accepted: 06/26/2016] [Indexed: 01/14/2023] Open
Abstract
OBJECTIVE A disturbed day-night rhythm is associated with metabolic perturbations that can lead to obesity and type 2 diabetes mellitus (T2DM). In skeletal muscle, a reduced oxidative capacity is also associated with the development of T2DM. However, whether oxidative capacity in skeletal muscle displays a day-night rhythm in humans has so far not been investigated. METHODS Lean, healthy subjects were enrolled in a standardized living protocol with regular meals, physical activity and sleep to reflect our everyday lifestyle. Mitochondrial oxidative capacity was examined in skeletal muscle biopsies taken at five time points within a 24-hour period. RESULTS Core-body temperature was lower during the early night, confirming a normal day-night rhythm. Skeletal muscle oxidative capacity demonstrated a robust day-night rhythm, with a significant time effect in ADP-stimulated respiration (state 3 MO, state 3 MOG and state 3 MOGS, p < 0.05). Respiration was lowest at 1 PM and highest at 11 PM (state 3 MOGS: 80.6 ± 4.0 vs. 95.8 ± 4.7 pmol/mg/s). Interestingly, the fluctuation in mitochondrial function was also observed in whole-body energy expenditure, with peak energy expenditure at 11 PM and lowest energy expenditure at 4 AM (p < 0.001). In addition, we demonstrate rhythmicity in mRNA expression of molecular clock genes in human skeletal muscle. CONCLUSIONS Our results suggest that the biological clock drives robust rhythms in human skeletal muscle oxidative metabolism. It is tempting to speculate that disruption of these rhythms contribute to the deterioration of metabolic health associated with circadian misalignment.
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Key Words
- BMAL1, brain and muscle ARNT-like 1
- BMI, body mass index
- Biological rhythm
- CLOCK, circadian locomotor output cycles kaput
- CRY, cryptochrome
- Energy metabolism
- FCCP, carbonyl cyanide-4-trifluoromethoxyphenylhydrazone
- Mitochondria
- Molecular clock
- NADH, reduced nicotinamide adenine dinucleotide
- Oxidative capacity
- PER, period
- RER, respiratory exchange ratio
- RT-QPCR, Real-Time Quantitative Polymerase Chain Reaction
- Skeletal muscle
- T2DM, type 2 diabetes mellitus
- TCA cycle, tricarboxylic acid cycle
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Affiliation(s)
- Dirk van Moorsel
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands; Department of Internal Medicine, Division of Endocrinology, Maastricht University Medical Center, PO Box 5800, 6202 AZ Maastricht, The Netherlands
| | - Jan Hansen
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands
| | - Bas Havekes
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands; Department of Internal Medicine, Division of Endocrinology, Maastricht University Medical Center, PO Box 5800, 6202 AZ Maastricht, The Netherlands
| | - Frank A J L Scheer
- Medical Chronobiology Program, Division of Sleep and Circadian Disorders, Brigham and Women's Hospital, Boston, MA 02115, USA; Division of Sleep Medicine, Harvard Medical School, Boston, MA 02115, USA
| | - Johanna A Jörgensen
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands
| | - Joris Hoeks
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands
| | - Vera B Schrauwen-Hinderling
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands; Department of Radiology, Maastricht University Medical Center, PO Box 5800, 6202 AZ Maastricht, The Netherlands
| | - Helene Duez
- Univ Lille, Inserm, Institut Pasteur de Lille, UMR1011-EGID, BP245, 59019 Lille, France
| | - Philippe Lefebvre
- Univ Lille, Inserm, Institut Pasteur de Lille, UMR1011-EGID, BP245, 59019 Lille, France
| | - Nicolaas C Schaper
- Department of Internal Medicine, Division of Endocrinology, Maastricht University Medical Center, PO Box 5800, 6202 AZ Maastricht, The Netherlands; CAPHRI School for Public Health and Primary Care, Maastricht University Medical Center, Maastricht, The Netherlands
| | - Matthijs K C Hesselink
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands
| | - Bart Staels
- Univ Lille, Inserm, Institut Pasteur de Lille, UMR1011-EGID, BP245, 59019 Lille, France
| | - Patrick Schrauwen
- Department of Human Biology and Human Movement Sciences, NUTRIM School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, PO Box 616, 6200 MD Maastricht, The Netherlands.
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Cadenas C, van de Sandt L, Edlund K, Lohr M, Hellwig B, Marchan R, Schmidt M, Rahnenführer J, Oster H, Hengstler JG. Loss of circadian clock gene expression is associated with tumor progression in breast cancer. Cell Cycle 2015; 13:3282-91. [PMID: 25485508 PMCID: PMC4613905 DOI: 10.4161/15384101.2014.954454] [Citation(s) in RCA: 147] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Several studies suggest a link between circadian rhythm disturbances and tumorigenesis. However, the association between circadian clock genes and prognosis in breast cancer has not been systematically studied. Therefore, we examined the expression of 17 clock components in tumors from 766 node-negative breast cancer patients that were untreated in both neoadjuvant and adjuvant settings. In addition, their association with metastasis-free survival (MFS) and correlation to clinicopathological parameters were investigated. Aiming to estimate functionality of the clockwork, we studied clock gene expression relationships by correlation analysis. Higher expression of several clock genes (e.g., CLOCK, PER1, PER2, PER3, CRY2, NPAS2 and RORC) was found to be associated with longer MFS in univariate Cox regression analyses (HR<1 and FDR-adjusted P < 0.05). Stratification according to molecular subtype revealed prognostic relevance for PER1, PER3, CRY2 and NFIL3 in the ER+/HER2- subgroup, CLOCK and NPAS2 in the ER-/HER2- subtype, and ARNTL2 in HER2+ breast cancer. In the multivariate Cox model, only PER3 (HR = 0.66; P = 0.016) and RORC (HR = 0.42; P = 0.003) were found to be associated with survival outcome independent of established clinicopathological parameters. Pairwise correlations between functionally-related clock genes (e.g., PER2-PER3 and CRY2-PER3) were stronger in ER+, HER2- and low-grade carcinomas; whereas, weaker correlation coefficients were observed in ER- and HER2+ tumors, high-grade tumors and tumors that progressed to metastatic disease. In conclusion, loss of clock genes is associated with worse prognosis in breast cancer. Coordinated co-expression of clock genes, indicative of a functional circadian clock, is maintained in ER+, HER2-, low grade and non-metastasizing tumors but is compromised in more aggressive carcinomas.
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Key Words
- ARNTL/2, aryl hydrocarbon receptor nuclear translocator-like/2
- BHLHE40/41, basic helix-loop-helix family, member e
- CLOCK, circadian locomotor output cycles kaput
- CRY1/2, cryptochrome circadian clock 1/2
- DBP, D site of albumin promoter (albumin D-box) binding protein
- DFS, disease-free survival
- ER, estrogen receptor
- HER2, human epidermal growth factor receptor 2
- HR, hazard ratio
- MFS, metastasis-free survival
- NFIL3, nuclear factor, interleukin 3 regulated
- NPAS2, neuronal PAS domain protein 2
- NR1D2, nuclear receptor subfamily 1, group D, member 2
- PER1/2/3, period circadian clock 1/2/3
- RORA/B/C, RAR-related orphan receptor alpha/beta/gamma
- SCN, suprachiasmatic nucleus
- breast cancer
- circadian clock
- clock genes
- estrogen receptor
- metastasis-free survival
- tumor progression
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Affiliation(s)
- Cristina Cadenas
- a Leibniz Research Centre for Working Environment an Human Factors (ifADo) at the TU Dortmund University ; Dortmund , Germany
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Chappuis S, Ripperger JA, Schnell A, Rando G, Jud C, Wahli W, Albrecht U. Role of the circadian clock gene Per2 in adaptation to cold temperature. Mol Metab 2013; 2:184-93. [PMID: 24049733 DOI: 10.1016/j.molmet.2013.05.002] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/25/2013] [Revised: 05/02/2013] [Accepted: 05/03/2013] [Indexed: 01/12/2023] Open
Abstract
Adaptive thermogenesis allows mammals to resist to cold. For instance, in brown adipose tissue (BAT) the facultative uncoupling of the proton gradient from ATP synthesis in mitochondria is used to generate systemic heat. However, this system necessitates an increase of the Uncoupling protein 1 (Ucp1) and its activation by free fatty acids. Here we show that mice without functional Period2 (Per2) were cold sensitive because their adaptive thermogenesis system was less efficient. Upon cold-exposure, Heat shock factor 1 (HSF1) induced Per2 in the BAT. Subsequently, PER2 as a co-activator of PPARα increased expression of Ucp1. PER2 also increased Fatty acid binding protein 3 (Fabp3), a protein important to transport free fatty acids from the plasma to mitochondria to activate UCP1. Hence, in BAT PER2 is important for the coordination of the molecular response of mice exposed to cold by synchronizing UCP1 expression and its activation.
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Key Words
- Adrβ3, beta-adrenergic receptor 3
- BAT, brown adipose tissue
- BMAL1, brain and muscle ARNT-like factor
- Brown adipose tissue
- CLOCK, circadian locomotor output cycles kaput
- ChIP, chromatin immunoprecipitation
- FABP3, fatty acid binding protein 3
- FFA, free fatty acids
- HSE, heat shock element
- HSF1, heat shock factor 1
- Humidity
- NPAS2, neuronal PAS-domain containing protein 2
- PGC-1, PPAR-coactivator -1
- PPAR, peroxisome proliferator-activated receptor
- PPRE, PPAR element
- Per2, Period2
- RXR, retinoid X receptor
- SCN, suprachiasmatic nuclei
- Season
- TAG, triglycerides
- UCP1, uncoupling protein 1
- WAT, white adipose tissue
- WT, wild-type
- ZT, zeitgeber time
- luc, luciferase
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Affiliation(s)
- Sylvie Chappuis
- Department of Biology, Unit of Biochemistry, University of Fribourg, Switzerland
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