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Spatiotemporal changes of tissue glycans depending on localization in cardiac aging. Regen Ther 2023; 22:68-78. [PMID: 36712959 PMCID: PMC9841240 DOI: 10.1016/j.reth.2022.12.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 11/30/2022] [Accepted: 12/22/2022] [Indexed: 01/09/2023] Open
Abstract
Heart failure is caused by various factors, making the underlying pathogenic mechanisms difficult to identify. Since cardiovascular disease tends to worsen over time, early diagnosis is key for treatment. In addition, understanding the qualitative changes in the heart associated with aging, where information on the direct influences of aging on cardiovascular disease is limited, would also be useful for treatment and diagnosis. To fill these research gaps, the focus of our study was to detect the structural and functional molecular changes associated with the heart over time, with a focus on glycans, which reflect the type and state of cells. METHODS We investigated glycan localization in the cardiac tissue of normal mice and their alterations during aging, using evanescent-field fluorescence-assisted lectin microarray, a technique based on lectin-glycan interaction, and lectin staining. RESULTS The glycan profiles in the left ventricle showed differences between the luminal side (medial) and wall side (lateral) regions. The medial region was characterized by the presence of sialic acid residues. Moreover, age-related changes in glycan profiles were observed at a younger age in the medial region. The difference in the age-related decrease in the level of α-galactose stained with Griffonia simplicifolia lectin-IB4 in different regions of the left ventricle suggests spatiotemporal changes in the number of microvessels. CONCLUSIONS The glycan profile, which retains diverse glycan structures, is supported by many cell populations, and maintains cardiac function. With further research, glycan localization and changes have the potential to be developed as a marker of the signs of heart failure.
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Key Words
- ACG, Agrocybe cylindracea galectin
- Aging
- BPL, Bauhinia purpurea alba lectin
- Calsepa, Calystegia sepium agglutinin
- Cardiac tissue
- ConA, Canavalia ensiformis lectin
- DAPI, 4′,6-diamidino-2-phenylindole
- DBA, Dolichos biflorus agglutinin
- ECA, Erythrina cristagalli agglutinin
- ECM, extracellular matrices
- EMT, endothelial-to-mesenchymal transition
- FITC, fluorescein isothiocyanate
- GSL-I, Griffonia simplicifolia lectin I
- Gal, galactose
- GalNAc, N-acetylgalactosamine
- GlcNAc, N-acetylglucosamine
- Glycan profile
- HE, hematoxylin-eosin
- LEL, Lycopersicon esculentum lectin
- LTL, Lotus tetragonolobus lectin
- Lectin microarray
- MAH, Maackia amurensis hemagglutinin
- MAL-I, Maackia amurensis lectin I
- Man, mannose
- Microvessels
- NPA, Narcissus pseudonarcissus agglutinin
- PBS, phosphate-buffered saline
- PCA, principal component analysis
- PHA-L, Phaseolus vulgaris leucoagglutinin
- PNA, Arachis hypogaea agglutinin
- RCA120, Ricinus communis agglutinin I
- SBA, Glycine max agglutinin
- SNA, Sambucus nigra agglutinin
- SSA, Sambucus sieboldiana agglutinin
- STL, Solanum tuberosum lectin
- TJA-I, Trichosanthes japonica agglutinin I
- UDA, Urtica dioica
- VVA, Vicia villosa agglutinin
- WFA, Wisteria floribunda agglutinin
- WGA, Triticum vulgaris agglutinin (wheat germ agglutinin)
- α-SMA, alpha smooth muscle actin
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Understanding Aspergillus fumigatus galactosaminogalactan biosynthesis: A few questions remain. Cell Surf 2023; 9:100095. [PMID: 36691652 PMCID: PMC9860509 DOI: 10.1016/j.tcsw.2023.100095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 01/05/2023] [Accepted: 01/06/2023] [Indexed: 01/08/2023] Open
Abstract
Half a century after their discovery, polymers of N-acetylgalactosamine produced by the Aspergilli have garnered new interest as mediators of fungal virulence. Recent work has focused on the Aspergillus fumigatus secreted and cell wall-associated heteropolymer, galactosaminogalactan (GAG). This polymer, composed of galactose (Gal) and partially deacetylated N-acetylgalactosamine (GalNAc), plays a role in a variety of pathogenic processes including biofilm formation, immune modulation and evasion, and resistance to antifungals. Given its many potential contributions to fungal pathogenesis, GAG is a promising therapeutic target for novel antifungal strategies. As such, several studies have sought to elucidate the biosynthetic pathways required for GAG production and secretion. Herein we review the progress made in the understanding of the molecular mechanisms underlying GAG synthesis and identify several gaps in our understanding of this process.
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N-glycome and N-glycoproteome of a hematophagous parasitic nematode Haemonchus. Comput Struct Biotechnol J 2021; 19:2486-2496. [PMID: 34025939 PMCID: PMC8113779 DOI: 10.1016/j.csbj.2021.04.038] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Revised: 04/14/2021] [Accepted: 04/16/2021] [Indexed: 12/24/2022] Open
Abstract
N-glycosylation is a physiologically vital post-translational modification of proteins in eukaryotic organisms. Initial work on Haemonchus contortus - a blood-sucking nematode of ruminants with a broad geographical distribution - has shown that this parasite harbors N-glycans with exclusive chitobiose modifications. Besides, several immunogenic proteins (e.g., amino- and metallo-peptidases) are known to be N-glycosylated in adult worms. However, an informative atlas of N-glycosylation in H. contortus is not yet available. Herein, we report 291 N-glycosylated proteins with a total of 425 modification sites in the parasite. Among them, many peptidase families (e.g., peptidase C1 and M1) including potential vaccine targets were enriched. Notably, the glycan-rich conjugates are distributed primarily in the intestine and gonads of adult worms, and consequently hidden from the host's immune system. Collectively, these data provide a comprehensive atlas of N-glycosylation in a prevalent parasitic nematode while underlining its significance for infection, immunity and prevention.
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Key Words
- Con A, concanavalin A
- Fuc, fucose
- Gal, galactose
- Gal-Fuc, galactosylated fucose
- GalNAc, N-acetylgalactosamine
- GlcNAc, N-acetylglucosamine
- Glycopeptide
- HILIC, hydrophilic interaction chromatography
- Haemonchus contortus
- LC-MS/MS, liquid chromatography-tandem mass spectrometry
- MALDI-ToF MS, matrix-assisted laser desorption ionization-time of flight mass spectrometry
- Man, mannose
- Mass spectrometry
- N-glycan
- N-glycosylation
- OST, oligosaccharyltransferase
- PNGase A/F, peptide-N-glycosidase A/F
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Characterization of glycan substrates accumulating in GM1 Gangliosidosis. Mol Genet Metab Rep 2019; 21:100524. [PMID: 31720227 PMCID: PMC6838976 DOI: 10.1016/j.ymgmr.2019.100524] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 09/10/2019] [Accepted: 09/13/2019] [Indexed: 10/28/2022] Open
Abstract
Introduction GM1 gangliosidosis is a rare autosomal recessive genetic disorder caused by the disruption of the GLB1 gene that encodes β-galactosidase, a lysosomal hydrolase that removes β-linked galactose from the non-reducing end of glycans. Deficiency of this catabolic enzyme leads to the lysosomal accumulation of GM1 and its asialo derivative GA1 in β-galactosidase deficient patients and animal models. In addition to GM1 and GA1, there are other glycoconjugates that contain β-linked galactose whose metabolites are substrates for β-galactosidase. For example, a number of N-linked glycan structures that have galactose at their non-reducing end have been shown to accumulate in GM1 gangliosidosis patient tissues and biological fluids. Objective In this study, we attempt to fully characterize the broad array of GLB1 substrates that require GLB1 for their lysosomal turnover. Results Using tandem mass spectrometry and glycan reductive isotope labeling with data-dependent mass spectrometry, we have confirmed the accumulation of glycolipids (GM1 and GA1) and N-linked glycans with terminal beta-linked galactose. We have also discovered a novel set of core 1 and 2 O-linked glycan metabolites, many of which are part of structurally-related isobaric series that accumulate in disease. In the brain of GLB1 null mice, the levels of these glycan metabolites increased along with those of both GM1 and GA1 as a function of age. In addition to brain tissue, we found elevated levels of both N-linked and O-linked glycan metabolites in a number of peripheral tissues and in urine. Both brain and urine samples from human GM1 gangliosidosis patients exhibited large increases in steady state levels for the same glycan metabolites, demonstrating their correlation with this disease in humans as well. Conclusions Our studies illustrate that GLB1 deficiency is not purely a ganglioside accumulation disorder, but instead a broad oligosaccharidosis that include representatives of many β-linked galactose containing glycans and glycoconjugates including glycolipids, N-linked glycans, and various O-linked glycans. Accounting for all β-galactosidase substrates that accumulate when this enzyme is deficient increases our understanding of this severe disorder by identifying metabolites that may drive certain aspects of the disease and may also serve as informative disease biomarkers to fully evaluate the efficacy of future therapies.
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Key Words
- A2G2, Oxford glycan naming designation for NA2 glycan
- BMP, Bis(monoacylglycero) phosphate
- Beta-galactosidase
- Disease biomarkers
- GLB1
- GLB1, β-galactosidase
- GM1 gangliosidosis
- GRIL-LC/MS, glycan reductive isotope labeling liquid chromatography mass spectrometry
- Gal, galactose
- GlcNAc, N-acetylglucosamine
- Glycan metabolites
- Glycoanalysis
- Hex, hexose
- HexNAc, N-acetylhexosamine
- KS, keratan sulfate
- MPS, mucopolysaccharidosis
- Man, mannose
- NRE, non-reducing end
- TIC, total ion current
- XIC, extracted ion current
- dp, degree of polymerization
- m/z, mass over charge
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Mass spectrometric quantification of plasma glycosphingolipids in human GM3 ganglioside deficiency. CLINICAL MASS SPECTROMETRY 2019; 14 Pt B:106-114. [PMID: 34917767 DOI: 10.1016/j.clinms.2019.03.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 02/28/2019] [Accepted: 03/12/2019] [Indexed: 01/01/2023]
Abstract
Background Among Amish communities of North America, biallelic mutations of ST3GAL5 (c.694C > T) eliminate synthesis of GM3 and its derivative downstream a- and b-series gangliosides. Systemic ganglioside deficiency is associated with infantile onset psychomotor retardation, slow brain growth, intractable epilepsy, deafness, and cortical visual impairment. We developed a robust quantitative assay to simultaneously characterize glycan and ceramide moieties of plasma glycosphingolipids (GSLs) among ST3GAL5 c.694C > T homozygotes (n = 8), their heterozygous siblings (n = 24), and wild type control (n = 19) individuals. Methods Following extraction and saponification of total plasma lipids, GSLs were purified on a tC18 cartridge column, permethylated, and subjected to nanospray ionization mass spectrometry utilizing neutral loss scanning and data-dependent acquisition. Plasma GSLs were quantified against appropriate synthetic standards. Results Our method demonstrated linearity from 5 to 250 μl of plasma. Recovery of synthetic GSLs spiked into plasma was 99-104% with no matrix interference. Quantitative plasma GSL profiles discriminated among ST3GAL5 genotypes: GM3 and GD3 were undetectable in ST3GAL5 c.694C > T homozygotes, who had markedly elevated lactosylceramide (19.17 ± 4.20 nmol/ml) relative to heterozygous siblings (9.62 ± 2.46 nmol/ml) and wild type controls (6.55 ± 2.16 nmol/ml). Children with systemic ganglioside deficiency had a distinctive shift in ceramide composition toward higher mass species. Conclusions Our quantitative glycolipidomics method discriminates among ST3GAL5 c.694C > T genotypes, can reveal subtle structural heterogeneity, and represents a useful new strategy to diagnose and monitor GSL disorders in humans.
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Key Words
- CID, collision-induced dissociation
- Cer, ceramide
- Dp, degree of polymerization
- EGCase, endoglycosylceramidase
- ESI-MS, electrospray ionization mass spectrometry
- GD3, disialo-ganglioside GD3 (IUPAC-IUB: II3- α -(Neu5Ac)2-Gg2Cer)
- GM1b, monosialo-ganglioside GM1b (IUPAC-IUB: IV3-α-Neu5Ac-Gg4Cer)
- GM3
- GM3, monosialo-ganglioside GM3
- GSL, glycosphingolipid
- Gal, galactose
- GalNAc, N-acetylgalactosamine
- Ganglioside
- Gb3, globotriaosylceramide (IUPAC-IUB: Gb3Cer)
- Gb3-D, deuterated Gb3
- Gb4, globotetraosylceramide (IUPAC-IUB: Gb4Cer)
- Glc, glucose
- GlcCer, glucosylceramide
- Glycosphingolipid
- LacCer, lactosylceramide
- MS, mass spectrometry
- MSn, multidimensional mass spectrometry
- Mass spectrometry
- NL, neutral loss
- NSI, nanospray ionization
- Neu5Ac, sialic acid as N-5-acetylneuraminic acid
- Plasma
- ST3GAL5, CMP-Neu5Ac:Lactosylceramide alpha-2,3-sialyltransferase 5, previously known as SIAT9, SIATGM3S, ST3GalV, GM3-synthase
- TIM, total ion mapping
- UPLC, ultra-high pressure liquid chromatography
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Density functional theory based probe of the affinity interaction of saccharide ligands with extra-cellular sialic acid residues. J Biomol Struct Dyn 2018; 37:1545-1554. [PMID: 29624120 DOI: 10.1080/07391102.2018.1461690] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Changes in glycosylation pattern leads to malignant transformations among the cells. In combination with upregulated actions of sialyltransferases, it ultimately leads to differential expression of sialic acid (SA) at cell surface. Given its negative charge and localization to extracellular domain, SA has been exploited for the development of targeted theranostics using approaches, such as, cationization and appending recognition saccharides on carrier surface. In this study, we have performed quantum mechanical calculations based on density functional theory (DFT) to study the interaction of saccharides with extracellular SA. Gradient-corrected DFT with the three parameter function (B3) was utilized for the calculation of Lee-Yang-Parr (LYP) correlation function. Atomic charge, vibrational frequencies and energy of the optimized structures were calculated through B3LYP. Our calculations demonstrate a stronger galactose-sialic acid interaction at tumour-relevant low pH and hyperthermic condition. These results support the application of pH responsive delivery vehicles and targeted hyperthermic chemotherapy for eradicating solid tumour deposits. These studies, conducted a priori, can guide the formulation scientists over appropriate choice of ligands and their applications in the design of 'smart' theranostic tools.
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Key Words
- AChE, Acetylcholine Esterase
- ASDase, aspartate semialdehyde dehydrogenase
- B3LYP, Becke 3-Parameter Lee, Yang and Parr
- BACE1, Beta-secretase 1
- BSSE, basis set superposition error
- CK2, casein kinase 2
- CMAS, cytidine monophosphate N-acetylneuraminic acid synthase
- DFT, density functional theory
- EcPLA, Echis carinatus Phospholipase A
- FF, fukui function
- GSK3β, glycogen synthase kinase 3β
- Gal, galactose
- HLG, HOMO-LUMO gap
- HOMO, highest occupied molecular orbital
- LUMO, lowest unoccupied molecular orbital
- MEP, molecular electrostatic potential
- Man, mannose
- NBO, natural bond orbital
- NC, nanocarriers.
- PBA, phenylboronic acid
- SA, sialic acid
- cancer
- density functional theory
- hypersialylation
- recognition saccharides
- targeted theranostics
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Isolation and analysis of sugar nucleotides using solid phase extraction and fluorophore assisted carbohydrate electrophoresis. MethodsX 2016; 3:251-60. [PMID: 27222820 PMCID: PMC4821447 DOI: 10.1016/j.mex.2016.03.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Accepted: 03/11/2016] [Indexed: 11/23/2022] Open
Abstract
The building blocks of simple and complex oligosaccharides, termed sugar nucleotides, are often overlooked for their role in metabolic diseases and may hold the key to the underlying disease pathogenesis. Multiple reasons may account for the lack of analysis and quantitation of these sugar nucleotides, including the difficulty in isolation and purification as well as the required expensive instrumentation such as a high performance liquid chromatography (HPLC), mass spectrometer, or capillary electrophoresis. We have established a simple yet effective way to purify and quantitate sugar nucleotides using solid phase extraction (SPE) chromatography combined with fluorophore assisted carbohydrate electrophoresis (FACE). The simplicity of use, combined with the ability to run multiple samples at one time, give this technique a distinct advantage over the established methods for isolation and analysis of sugar nucleotides from cell culture models. Sugar nucleotides can be easily purified with solid phase extraction chromatography. FACE can be used to analyze multiple nucleotide sugar extracts with a single run. The proposed method is simple, affordable, and uses common everyday research labware.
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Key Words
- AMAC, 2-aminoacridone
- APS, ammonium persulfate
- CMP, cytosine monophosphate
- Carbohydrate
- Electrophoresis
- FACE, fluorophore assisted carbohydrate electrophoresis
- Face
- GDP, guanosine diphosphate
- Gal, galactose
- GalNAc, N-acetylgalactosamine
- GlcNAc, N-acetylglucosamine
- GlcUA, glucuronic acid
- HPLC
- HPLC, high performance liquid chromatography
- Man, Mannose
- NeuAc, sialic acid
- SPE, solid phase extraction
- Sugar nucleotide analysis by SPE and FACE
- Sugar nucleotides
- TEAA, triethylamine acetate
- TEMED, N′,N′,N′N′-tetramethylenediamine
- UDP, uridine diphosphate
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N-acetylglucosamine suppresses osteoclastogenesis in part through the promotion of O-GlcNAcylation. Bone Rep 2016; 5:15-21. [PMID: 28326343 PMCID: PMC4926832 DOI: 10.1016/j.bonr.2016.02.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Accepted: 02/01/2016] [Indexed: 01/28/2023] Open
Abstract
Osteoclasts are the only cells in an organism capable of resorbing bone. These cells differentiate from monocyte/macrophage lineage cells upon stimulation by receptor activator of NF-κB ligand (RANKL). On the other hand, osteoclastogenesis is reportedly suppressed by glucose via the downregulation of NF-κB activity through suppression of reactive oxygen species generation. To examine whether other sugars might also affect osteoclast development, we compared the effects of monomeric sugars (glucose, galactose, N-acetylglucosamine (GlcNAc), and N-acetylgalactosamine (GalNAc)) on the osteoclastogenesis of murine RAW264 cells. Our results demonstrated that, in addition to glucose, both GlcNAc and GalNAc, which each have little effect on the generation of reactive oxygen species, suppress osteoclastogenesis. We hypothesized that GlcNAc might affect osteoclastogenesis through the upregulation of O-GlcNAcylation and showed that GlcNAc increases global O-GlcNAcylation, thereby suppressing the RANKL-dependent phosphorylation of NF-κB p65. Furthermore, an inhibitor of N-acetyl-β-D-glucosaminidase, O-(2-acetamido-2-deoxy-D-glucopyranosylidene) amino N-phenylcarbamate (PUGNAc), which also increases O-GlcNAcylation, suppressed the osteoclastogenesis of RAW264 cells and that of human peripheral blood mononuclear cells. Together, these data suggest that GlcNAc suppresses osteoclast differentiation in part through the promotion of O-GlcNAcylation. Along with glucose, the monomeric sugars GlcNAc and GalNAc suppress osteoclastic differentiation. Unlike glucose, GlcNAc and GalNAc have little effect on RANKL-induced ROS production. GlcNAc and the N-acetyl-β-D-glucosaminidase inhibitor PUGNAc both increase O-GlcNAcylation and suppress osteoclastogenesis. Upregulation of O-GlcNAcylation suppresses the RANKL-dependent phosphorylation of NF-κB p65. Together, these results suggest that GlcNAc suppresses osteoclastogenesis in part through the promotion of O-GlcNAcylation.
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Key Words
- Gal, galactose
- GalNAc, N-acetylgalactosamine
- Glc, glucose
- GlcNAc
- GlcNAc, N-acetylglucosamine
- M-CSF, macrophage colony-stimulating factor
- N-acetylglucosamine
- NF-κB
- NF-κB, nuclear factor-κB
- O-GlcNAcylation
- Osteoclast
- PBMC, peripheral blood mononuclear cell
- PUGNAc, O-(2-acetamido-2-deoxy-D-glucopyranosylidene) amino N-phenylcarbamate
- RANKL, receptor activator of nuclear factor-κB ligand
- ROS, reactive oxygen species
- TRAP, tartrate-resistant acid phosphatase
- UDP, uridine diphosphate
- sRANKL, soluble receptor activator of nuclear factor-κB ligand
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Insights in the etiopathology of galactosyltransferase II (GalT-II) deficiency from transcriptome-wide expression profiling of skin fibroblasts of two sisters with compound heterozygosity for two novel B3GALT6 mutations. Mol Genet Metab Rep 2014. [PMID: 28649518 PMCID: PMC5471164 DOI: 10.1016/j.ymgmr.2014.11.005] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Mutations in B3GALT6, encoding the galactosyltransferase II (GalT-II) involved in the synthesis of the glycosaminoglycan (GAG) linkage region of proteoglycans (PGs), have recently been associated with a spectrum of connective tissue disorders, including spondyloepimetaphyseal dysplasia with joint laxity type 1 (SEMDJL1) and Ehlers–Danlos-like syndrome. Here, we report on two sisters compound heterozygous for two novel B3GALT6 mutations that presented with severe short stature and progressive kyphoscoliosis, joint hypermobility and laxity, hyperextensible skin, platyspondyly, short ilia, and elbow malalignment. Microarray-based transcriptome analysis revealed the differential expression of several genes encoding extracellular matrix (ECM) structural components, including COMP, SPP1, COL5A1, and COL15A1, enzymes involved in GAG synthesis and in ECM remodeling, such as CSGALNACT1, CHPF, LOXL3, and STEAP4, signaling transduction molecules of the TGFβ/BMP pathway, i.e., GDF6, GDF15, and BMPER, and transcription factors of the HOX and LIM families implicated in skeletal and limb development. Immunofluorescence analyses confirmed the down-regulated expression of some of these genes, in particular of the cartilage oligomeric matrix protein and osteopontin, encoded by COMP and SPP1, respectively, and showed the predominant reduction and disassembly of the heparan sulfate specific GAGs, as well as of the PG perlecan and type III and V collagens. The key role of GalT-II in GAG synthesis and the crucial biological functions of PGs are consistent with the perturbation of many physiological functions that are critical for the correct architecture and homeostasis of various connective tissues, including skin, bone, cartilage, tendons, and ligaments, and generates the wide phenotypic spectrum of GalT-II-deficient patients. Clinical features/molecular characterization of two patients with spondyloepimetaphyseal dysplasia with joint laxity type 1 Identification of two novel B3GALT6 mutations First report of transcriptome-wide gene expression profiling on GalT-II-deficient fibroblasts Immunofluorescence studies of several ECM structural components in GalT-II-deficient cells Enlargement of the knowledge on the GalT-II deficiency’s molecular pathogenesis
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Key Words
- ATCS, adducted-thumb club foot syndrome
- Abs, antibodies
- B3GALT6
- BMP, bone morphogenetic proteins
- C4ST, chondroitin 4-sulfotransferase
- C6ST, chondroitin 6-sulfotransferase
- COLLI, type I collagen
- COLLIII, type III collagen
- COLLV, type V collagen
- COLLs, collagens
- COMP, cartilage oligomeric matrix protein
- CS, chondroitin sulfate
- CSGALNACT1, chondroitin sulfate N-acetylgalactosaminyltransferase 1
- CTDs, connective tissue disorders
- Cartilage oligomeric matrix protein
- ChPF, chondroitin polymerizing factor
- ChSy, chondroitin synthase
- D4ST, dermatan 4 sulfotransferase 1
- DCN, decorin
- DEGs, differentially expressed genes
- DS, dermatan sulfate
- ECM, extracellular matrix
- EDS, Ehlers–Danlos syndrome
- Ehlers–Danlos syndrome
- FN, fibronectin
- GAGs, glycosaminoglycans
- GO, gene ontology
- Gal, galactose
- GalNAc, N-acetylgalactosamine
- GalNAc4S-6ST, GalNAc 4-sulfate 6-O-sulfotransferase
- GalNAcT, β1,4-N-acetylgalactosaminyltransferase
- GalNAcT-16, N-acetylgalactosaminyltransferase 16
- GalT-I/II, galactosyltransferase I and II
- GalT-II deficiency
- GlcA, glucuronic acid
- GlcAT, glucuronosyltransferase
- GlcNAc, N-acetylglucosamine
- GlcNAcT, α1,4-N-acetylglucosaminyltransferase
- HA, hyaluronic acid
- HAS2, hyaluronan synthase 2
- HOX, homeobox gene family
- HPO, human phenotype ontology
- HS, heparan sulfate
- Hep, heparin
- IF, immunofluorescence microscopy studies
- IdoA, iduronic acid
- OPN, osteopontin
- Osteopontin
- PGs, proteoglycans
- PTC, premature termination codon of translation
- SEMDJL1, spondyloepimetaphyseal dysplasia with joint laxity type 1
- Spondyloepimetaphyseal dysplasia with joint laxity type 1
- TNs, tenascins
- Xyl, xylose
- XylT, xylosyltransferase
- qPCR, quantitative polymerase chain reaction
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