Factors affecting highly pathogenic avian influenza vaccination practices at poultry farms in Tra Vinh, Vietnam

Background

The increased number of cases of highly pathogenic avian influenza (HPAI) as a zoonosis has raised concerns in terms of poultry and human health. Farmers' preventive practices are an effective way of reducing zoonosis. However, this practice may have been affected by many factors, including production behaviors, awareness, and farmers' perceptions of farmers toward zoonosis.

Aim

This study was conducted on 166 poultry farms in Tra Vinh Province with 14,894 poultry heads to determine the socioeconomic profiles and production characteristics of poultry farms and analyze the effect of these factors on HPAI vaccination practices.

Methods

Respondents were selected from lists provided by government officers. Descriptive statistics were used to describe all variables, and factors affecting HPAI vaccination practices were analyzed using binary regression analysis.

Results

The results showed that most farmers raised poultry with other livestock using the free-range method, which is a semi-intensive system. The primary objectives of poultry farming are meat sales and augmenting household consumption, with farmers primarily raising chicks produced on their farms. The implementation of the vaccine was less than 50% on the surveyed farms, with a small number of farmers administering an HPAI booster dose. However, only 6% of the farmers confirmed that their livestock had been exposed to HPAI. In addition, HPAI vaccination and booster dose practices significantly increased when farmers had 4-6 family members and received HPAI prevention training. Moreover, increased poultry numbers have led to increased vaccination rates and the implementation of booster doses for poultry. The study also reported that the vaccination rate decreased when poultry was used for household consumption.

Conclusion

Sociodemographic characteristics and production behaviors can affect the implementation of HPAI vaccination on small poultry farms.

Internet of Things-based sustainable environment management for large indoor facilities

Due to global warming and climate change, the poultry industry is heavily impacted, especially the broiler industry, due to the sensitive immune system of broiler chickens. However, the continuous monitoring and controlling of the farm's environmental parameters can help to curtail the negative impacts of the environment on chickens' health, leading to increased meat production. This article presents smart solutions to such issues, which are practically implemented, and have low production and operational costs. In this article, an Internet of Things (IoT) based environmental parameters monitoring has been demonstrated for the poultry farmhouse. This system enables the collection and visualization of crucially sensed data automatically and reliably, and at a low cost to efficiently manage and operate a poultry farm. The proposed IoT-based remote monitoring system collects and visualizes environmental parameters, such as air temperature, relative humidity (RH), oxygen level (O2), carbon dioxide (CO2), carbon monoxide (CO), and ammonia (NH3) gas concentrations. The wireless sensor nodes have been designed and deployed for efficient data collection of the essential environmental parameters that are key for monitoring and decision-making process. The hardware is implemented and deployed successfully at a site within the control shed of the poultry farmhouse. The results revealed important findings related to the environmental conditions within the poultry farm. The temperature inside the control sheds remained within the desired range throughout the monitoring period, with daily average values ranging from 32 °C to 34 °C. The RH showed slight variations monitoring period, ranging from 65% to 75%, with a daily average of 70%. The O2 concentration exhibited an average value of 17% to 18.5% throughout the monitoring period. The CO2 levels showed occasional increases, reaching a maximum value of 1,100 ppm. However, this value was below the maximum permissible level of 2,500 ppm, indicating that the ventilation system was effective in maintaining acceptable CO2 levels within the control sheds. The NH3 gas concentration remained consistently low throughout the duration, with an average value of 50 parts per million (ppm).

Airborne bacterial communities in the poultry farm and their relevance with environmental factors and antibiotic resistance genes

The accelerating occurrence and environmental dissemination of bacteria, gas pollutants and antibiotic resistance genes (ARGs) in aerosols of poultry farms have become emerging environmental issues due to their potential threat to animals, workers, and the communities located near such farms. Here, aerosol samples were gathered from inside and outside of the chicken house in winter with a transportable high-flow bioaerosol sampler. Then, 16S rRNA gene amplicon sequencing was used to categorize the bacteria in air samples, and the abundance of 12 ARG subtypes was researched via the real-time quantitative polymerase chain reaction (qPCR). Results indicated that the bacterial richness and diversity and total absolute abundance of ARGs were similar in the bioaerosols from indoor and downwind site of the poultry farm. The zoonotic pathogens, Staphylococcus and Corynebacterium, were detected both inside and outside of the chicken house, and the four most abundant target genes were bla_TEM, tetQ, ermB and sul1 in aerosols. Moreover, the correlation between the bacterial communities and environmental factors, such as NH₃ and H₂S concentrations, wind speed, temperature and relative humidity, was analyzed. The result revealed that the indoor bacteria community was positively associated with temperature and concentrations of air pollutants (NH₃ and H₂S), and could spread from confinement buildings to the ambient atmosphere through wind. In addition, the network analysis result showed that the airborne bacteria might significantly contribute in shaping the ARGs' profiles in bioaerosol from inside and outside of the poultry house. Overall, our results revealed the airborne bacterial communities and their associated influencing factors in the micro-environment (inside of the chicken house and nearby the boundary of the farm), and brought a new perspective for studying the gas pollutants and bioaerosol from poultry farms in winter.

Revealing the distribution characteristics of antibiotic resistance genes and bacterial communities in animal-aerosol-human in a chicken farm: From One-Health perspective

Antibiotics in breeding industry can enter the environment through multiple pathways, thus accelerating the emergence and spread of antibiotic resistance genes (ARGs), among which aerosol transmission is easily achieved and often overlooked. To elucidate the role of aerosols in this situation, the present study investigated the distribution characteristics of 107 ARG subtypes (targeting to eight different ARG types) and nine mobile genetic elements (MGEs) and bacterial community in animal (chicken cloaca), environment (aerosols) and human (nasopharynx) of a chicken farm (n = 42) in Henan Province. In total, 116 ARG subtypes and MGEs were identified in the poultry farm. The total bacterial concentration of aerosols inside the chicken house (3.117 × 104 CFU/m3) exceeded the corresponding limit. The microbial communities in the samples of cloaca swab (C) and the workers' nasopharyngeal swab (N) were closer, while the abundance distribution of ARGs/ MGEs in cloacal swab (C) and aerosol (AI) in chicken house were much similar. There were certain consistency of the microbial community structure and the distribution of ARGs among the three groups of chicken cloaca, air aerosol, and workers' nasopharynx. Our results highlighted that animal breeding does have a certain impact on the surrounding environment and human, and aerosols play an important role in this process.

Risk of multi-drug resistant Campylobacter spp. and residual antimicrobials at poultry farms and live bird markets in Bangladesh

BACKGROUND

Understanding potential risks of multi-drug resistant (MDR) pathogens from the booming poultry sector is a crucial public health concern. Campylobacter spp. are among the most important zoonotic pathogens associated with MDR infections in poultry and human. This study systematically examined potential risks and associated socio-environmental factors of MDR Campylobacter spp. in poultry farms and live bird markets (LBMs) of Bangladesh.

METHODS

Microbial culture and PCR-based methods were applied to examine the occurrence and MDR patterns of Campylobacter spp. in potential sources (n = 224) at 7 hatcheries, 9 broiler farms and 4 LBMs in three sub-districts. Antimicrobial residues in broiler meat and liver samples (n = 50) were detected by advanced chromatographic techniques. A questionnaire based cross-sectional survey was conducted on socio-environmental factors.

RESULTS

Overall, 32% (71/ 224) samples were found contaminated with Campylobacter spp. In poultry farms, Campylobacter spp. was primarily found in cloacal swab (21/49, 43%), followed by drinking water (8/24, 33%), and meat (8/28, 29%) samples of broilers. Remarkably, at LBMs, Campylobacter spp. was detected in higher prevalence (p < 0.05) in broiler meat (14/26, 54%), which could be related (p < 0.01) to bacterial contamination of drinking water (11/21, 52%) and floor (9/21, 43%). Campylobacter isolates, one from each of 71 positive samples, were differentiated into Campylobacter jejuni (66%) and Campylobacter coli (34%). Alarmingly, 49 and 42% strains of C. jejuni and C. coli, respectively, were observed as MDR, i.e., resistant to three or more antimicrobials, including, tetracycline, amoxicillin, streptomycin, fluoroquinolones, and macrolides. Residual antimicrobials (oxytetracycline, ciprofloxacin and enrofloxacin) were detected in majority of broiler liver (79%) and meat (62%) samples, among which 33 and 19%, respectively, had concentration above acceptable limit. Inadequate personal and environmental hygiene, unscrupulously use of antimicrobials, improper waste disposal, and lack of health surveillance were distinguishable risk factors, with local diversity and compound influences on MDR pathogens.

CONCLUSION

Potential contamination sources and anthropogenic factors associated with the alarming occurrence of MDR Campylobacter, noted in this study, would aid in developing interventions to minimize the increasing risks of poultry-associated MDR pathogens under 'One Health' banner that includes poultry, human and environment perspectives.

Characterization of an NDM-5 carbapenemase-producing Escherichia coli ST156 isolate from a poultry farm in Zhejiang, China

BACKGROUND

The emergence of carbapenem-resistant Enterobacteriaceae strains has posed a severe threat to public health in recent years. The mobile elements carrying the New Delhi metallo-β-lactqtamase (NDM) gene have been regarded as the major mechanism leading to the rapid increase of carbapenem-resistant Enterobacteriaceae strains isolated from clinics and animals.

RESULTS

We describe an NDM-5-producing Escherichia coli strain, ECCRA-119 (sequence type 156 [ST156]), isolated from a poultry farm in Zhejiang, China. ECCRA-119 is a multidrug-resistant (MDR) isolate that exhibited resistance to 27 antimicrobial compounds, including imipenem and meropenem, as detected by antimicrobial susceptibility testing (AST). The complete genome sequence of the ECCRA-119 isolate was also obtained using the PacBio RS II platform. Eleven acquired resistance genes were identified in the chromosome; four were detected in plasmid pTB201, while six were detected in plasmid pTB202. Importantly, the carbapenem-resistant gene blaNDM-5 was detected in the IncX3 plasmid pTB203. In addition, seven virulence genes and one metal-resistance gene were also detected. The results of conjugation experiments and the transfer regions identification indicated that the blaNDM-5-harboring plasmid pTB203 could be transferred between E. coli strains.

CONCLUSIONS

The results reflected the severe bacterial resistance in a poultry farm in Zhejiang province and increased our understanding of the presence and transmission of the blaNDM-5 gene.

Characteristics of poultry farms and assessment of their level of contamination by Salmonella spp. and Escherichia coli in the towns of N'Djamena and Doba in Chad

The main purpose of this study is to evaluate the characteristics of poultry farm sand the level of contamination of chickens farmed in the towns of N'Djamena and Doba by Salmonella spp. and Escherichia coli. Information, based on both formal and informal surveys, was collected from ten broiler chicken farms in N'Djamena and 16 traditional farms in Doba, mainly small establishments with low levels of investment. A total of 1,090 samples were taken from these farms over three periods, each of three months, from June to August 2014 then from March to May 2015 for Doba, and from November 2014 to January 2015 for N'Djamena. The NF EN ISO 6579 method and the seeding of a specific eosin methylene blue (EMB) agar were used to isolate 105 bacteria strains, including 65 (5.96%) strains of E. coli on five farms, giving a contamination level of 19.23%, and 40 (3.67%) strains of Salmonella on ten farms, with a contamination level of 38.46%. These high prevalences highlight, for the first time to the authors' knowledge, the contamination levels of the broiler chicken and traditional chicken value chains by Salmonella and E. coli in N'Djamena and Doba.

Intestinal injury caused by Eimeria spp. impairs the phosphotransfer network and gain weight in experimentally infected chicken chicks

Parasitic infections caused by protozoan belonging to genus Eimeria are considered important for the poultry industry, due to their severe intestinal lesions and high mortality rates, causing significant economic losses. Although several mechanisms of coccidiosis pathogenesis are known, the effects of this infection on intestinal enzymes linked to adenosine triphosphate (ATP) metabolism, as creatine kinase (CK), adenylate kinase (AK), and pyruvate kinase (PK), remain unknown. Thus, the aim of this study was to evaluate whether coccidiosis impairs enzymes linked ATP metabolism in the intestine of chicken chicks. For this, 42 animals that were 2 days old were divided into two groups: uninfected (the negative control group) and experimentally infected on second day of life (the positive control group). On days 5, 10, and 15 post-infection (PI), fecal samples were collected for oocyst counts; intestinal tissue was collected in order to evaluate CK, AK, and PK activities, as well as parameters of the oxidative stress and histopathology. On days 10 and 15 PI, infected animals showed high counts of oocysts in fecal samples and intestinal lesions compared to the control group. Cytosolic CK activity was higher in infected animals on days 10 and 15 PI compared to the control group, while mitochondrial CK activity was lower on days 5, 10, and 15 PI. Also, AK activity was lower in infected animals on days 10 and 15 PI compared to control group, while no differences were observed between groups regarding PK activity. In relation to parameters of oxidative stress, intestinal lipid peroxidation and reactive oxygen species levels were higher in infected animals on days 10 and 15 PI compared to the control group, while non-protein thiol levels were lower on day 10 PI. On the 15th day, infected animals had lower body weight (P < 0.05). Based on this evidence, inhibition of mitochondrial CK activity causes an impairment of intestinal energetic homeostasis possibly through depletion on ATP levels, although the cytosolic CK activity acted as an attempt to restore the mitochondrial ATP levels through a feedback mechanism. Moreover, the impairment on energy metabolism appears to be mediated by excessive production of intestinal ROS, as well as oxidation of lipids and thiol groups.

Listeria Species in Broiler Poultry Farms: Potential Public Health Hazards

Broiler meat production worldwide has been plagued by lethal food-poisoning bacteria diseases, including listeriosis. A fatality rate of 15.6% was recorded in human beings in the EU in 2015. During 2013, a total of 200 poultry farm samples, including litter, chicken breast, farm feed, and drinking water, were collected to generate baseline data for the characterization of the genus Listeria in broiler poultry farms. Listeria spp. were detected in a total of 95 (47.5%) poultry farm samples. The isolates of Listeria spp. included L. innocua (28.5%), L. ivanovii (12.5%), L. welshimeri (4.5%), and L. monocytogenes and L. seeligeri (1% each). Listeria spp. contamination rates were higher in farm feed (70%), followed by litter (52.5%), chicken breasts (42.2%), and drinking water (10%). Almost all Listeria spp. isolates were resistant to more than three classes of antibiotics (multidrug resistant). Besides this, we observed a significant resistance level to penicillin and fluoroquinolone drugs. However, lower resistance levels were recorded for broad-spectrum cephalosporins. The inlA, inlC, and inlJ virulence genes were detected in almost all of the L. monocytogenes isolates. Thus, food safety management approaches and interventions at all stages of the broiler rearing cycle were needed to control cross-contamination and the zoonotic potential of listeriosis.

The risk factors for avian influenza on poultry farms: a meta-analysis

BACKGROUND

Avian influenza is a severe threat both to humans and poultry, but so far, no systematic review on the identification and evaluation of the risk factors of avian influenza infection has been published. The objective of this meta-analysis is to provide evidence for decision-making and further research on AI prevention through identifying the risk factors associated with AI infection on poultry farms.

METHODS

The results from 15 selected studies on risk factors for AI infections on poultry farms were analyzed quantitatively by meta-analysis.

RESULTS

Open water source (OR=2.89), infections on nearby farms (OR=4.54), other livestock (OR=1.90) and disinfection of farm (OR=0.54) have significant association with AI infection on poultry farms. The subgroup analysis results indicate that there exist different risk factors for AI infections in different types of farms.

CONCLUSIONS

The main risk factors for AI infection in poultry farms are environmental conditions (open water source, infections on nearby farms), keeping other livestock on the same farm and no disinfection of the farm.

Non-methane volatile organic compounds predict odor emitted from five tunnel ventilated broiler sheds

Non-methane volatile organic compounds (NMVOCs) emitted from mechanically ventilated poultry sheds in similar stages (32-36 d) of broiler production were measured by thermal desorption-gas chromatography/mass spectrometry (TD-GC/MS), then identified using parallel factor analysis (PARAFAC2) and the NIST11 database. Calibration models predicting odor measured by dilution olfactometry from NMVOC concentrations via orthogonal projection to latent structures (O-PLS) made good predictions (Rp(2)=0.83-0.87, RMSEp=137-175OU) using one to eight NMVOCs with either one or two latent variables representing odor concentration and character, respectively. Similar changes in odorant composition were observed in each sampling campaign, with samples collected early in the day more odorous and more sulfurous than samples collected later in the day. High litter moisture favored sulfur-containing odorants over alcohols, aldehydes and ketones but had little bearing on perceived odor, whereas high bird density favored alcohols, aldehydes and ketones over sulfur-containing odorants. Eight VOCs that were important predictors of odor across all sheds in order of decreasing importance were dimethyl sulfide (DMS), dimethyl trisulfide (DMTS), 2-3 butanedione, 3-methyl-butanal, 1-butanol, 3-methyl-1-butanol, acetoin, and 2-butanone. Four additional NMVOCs also influenced perceived odor although less predictably; these were n-hexane, 2-butanol, dimethyl disulfide (DMDS), and 1-octen-3-ol. All of the odorants are associated with microbial or fungal activity in the litter and manure, except n-hexane, which may originate from hexane-extracted soybean meal in the chicken feed. The organosulfides measured in this study may have arisen from the field sites as well as from the degradation of thiols captured on sorbent tubes during analysis by TD-GC/MS.