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Miyake MM, Valera FCP, Martins RB, Compagnoni IM, Fantucci MZ, Murashima AAB, da Silva LECM, de Lima TM, de Souza MVO, Melo SR, Dolci RLL, Floriano CG, de Campos CAC, Nakanishi M, Freire GSM, Valente AL, Fornazieri MA, da Silva JLB, Anzolin LK, Issa MJA, Souza TV, Lima BA, SantAnna GD, Abreu CB, Sakano E, Cassettari AJ, Avelino MAG, Goncalves MC, de Camargo LA, Romano FR, Alves RD, Roithmann R, Redeker NK, Filho LLB, Dassi CS, Meurer ATO, Garcia DM, Aragon DC, Tepedino MS, Succar ACS, Vianna PM, Dos Santos MCJ, Filho RHR, Kosugi EM, Villa JF, Gregorio LL, Piltcher OB, Meotti CD, Tamashiro E, Arruda E, Anselmo Lima WT. Smell loss associated with SARS-CoV-2 is not clinically different from other viruses: a multicenter cohort study. Rhinology 2024; 62:55-62. [PMID: 37772802 DOI: 10.4193/rhin23.116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
BACKGROUND Although the COVID-19 pandemic has increased the prevalence of cases with olfactory loss, other respiratory viruses can also cause this condition. We aimed to compare the prevalence of acute SARS-CoV-2 infection and other respiratory viruses in patients with sudden smell loss, and to assess the impact of SARS-CoV-2 viral load and co-infection on olfactory symptoms. METHODS Patients with sudden smell loss were recruited in a multicenter prospective cohort study in 15 hospitals in Brazil. Clinical questionnaire, Connecticut Chemosensory Clinical Research Center (CCCRC) olfactory test and nasopharyngeal swab to perform a PCR-based respiratory viral panel were collected at first visit (day 0) and 30 and 60 days after recruitment. RESULTS 188 of 213 patients presented positive test result for SARS-CoV-2, among which 65 were co-infected with other respiratory viruses (e.g., rhinovirus, enterovirus, and parainfluenza). 25 had negative test results for SARS-CoV-2. Patients in both SARSCoV-2 and non-SARS-CoV-2 groups had objective anosmia (less than 2 points according to the psychophysical olfactory CCCRC) at day 0, with no significant difference between them. Both groups had significant smell scores improvement after 30 and 60 days, with no difference between them. Co-infection with other respiratory viruses, and SARS-CoV-2 viral load did not impact olfactory scores. CONCLUSION Patients with sudden smell loss associated with SARS-CoV-2 and other respiratory viruses had similar presentation, with most participants initiating with anosmia, and total or near total recovery after 60 days. SARS-CoV-2 viral load and co-infections with other respiratory viruses were not associated with poorer olfactory outcomes.
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Miyakoshi M, Kim H, Nakanishi M, Palmer J, Kanayama N. One out of ten independent components shows flipped polarity with poorer data quality: EEG database study. Hum Brain Mapp 2024; 45:e26540. [PMID: 38069570 PMCID: PMC10789196 DOI: 10.1002/hbm.26540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 10/30/2023] [Accepted: 11/07/2023] [Indexed: 01/16/2024] Open
Abstract
Independent component analysis (ICA) is widely used today for scalp-recorded EEG analysis. One of the limitations of ICA-based analysis is polarity indeterminacy. It is not easy to find detailed documentations that explains engineering solutions of how the polarity indeterminacy is addressed in a given implementation. We investigated how it is implemented in the case of EEGLAB and also the relation between the outcome of the polarity determination and classification of independent components (ICs) in terms of the estimated nature of the sources (brain, muscle, eye, etc.) using an open database of n = 212 EEG dataset of resting state recordings. We found that (1) about 91% of ICs showed positive-dominant IC scalp topographies; (2) positive-dominant ICs were more associated with brain-originated signals; (3) positive-dominant ICs showed more radial (peaked at 10-30 degrees deviations from the radial axis) dipolar projection pattern with less residual variance from fitting the equivalent current dipole. In conclusion, using the EEGLAB's default ICA algorithm, one out of 10 ICs results in flipping its polarity to negative, which is associated with non-radial dipole orientation with higher residual variance. Thus, we determined EEGLAB biases toward positive polarity in decomposing high-quality brain ICs.
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Arvaneh M, Tanaka T, Raza H, Nakanishi M, Ward TE. Editorial: Machine learning and signal processing for neurotechnologies and brain-computer interactions out of the lab. FRONTIERS IN NEUROERGONOMICS 2023; 4:1305482. [PMID: 38234481 PMCID: PMC10790893 DOI: 10.3389/fnrgo.2023.1305482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Accepted: 10/10/2023] [Indexed: 01/19/2024]
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Xu H, Hsu SH, Nakanishi M, Lin Y, Jung TP, Cauwenberghs G. Stimulus Design for Visual Evoked Potential Based Brain-Computer Interfaces. IEEE Trans Neural Syst Rehabil Eng 2023; PP:1-1. [PMID: 37262122 DOI: 10.1109/tnsre.2023.3280081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Visual stimuli design plays an important role in brain-computer interfaces (BCIs) based on visual evoked potentials (VEPs). Variations in stimulus parameters have been shown to affect both decoding accuracy and subjective perception experience, implying the need for a trade-off in design. In this study, we comprehensively and systematically compared various combinations of amplitude contrast and spectral content parameters in the stimulus design to quantify their impact on decoding performance and subject comfort. Specifically, three parameters were investigated: 1) contrast level, 2) temporal pattern (periodic steady-state or pseudo-random code-modulated), and 3) frequency range. We collected electroencephalogram (EEG) data and subjective perception ratings from ten subjects and evaluated the decoding accuracy and subject comfort rating for different combinations of the stimulus parameters. Our results indicate that while high-frequency steady-state VEP (SSVEP) stimuli were rated the most comfortable, they also had the lowest decoding accuracy. Conversely, low-frequency SSVEP stimuli were rated the least comfortable but had the highest decoding accuracy. Standard and high-frequency M-sequence code-modulated VEPs (c-VEPs) produced intermediates between the two. We observed a consistent trade-off relationship between decoding accuracy and subjective comfort level across all parameters. Based on our findings, we offer c-VEP as a preferable stimulus for achieving reliable decoding accuracy while maintaining a reasonable level of comfortability.
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Tejada MLG, Sano T, Hanyu T, Koppers AAP, Nakanishi M, Miyazaki T, Ishikawa A, Tani K, Shimizu S, Shimizu K, Vaglarov B, Chang Q. New evidence for the Ontong Java Nui hypothesis. Sci Rep 2023; 13:8486. [PMID: 37231104 DOI: 10.1038/s41598-023-33724-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 04/18/2023] [Indexed: 05/27/2023] Open
Abstract
The formation of the Ontong Java Nui super oceanic plateau (OJN), which is based on the model that the submarine Ontong Java Plateau (OJP), Manihiki Plateau (MP), and Hikurangi Plateau (HP) were once its contiguous fragments, could have been the largest globally consequential volcanic event in Earth's history. This OJN hypothesis has been debated given the paucity of evidence, for example, the differences in crustal thickness, the compositional gap between MP and OJP basalts and the apparent older age of both plateaus relative to HP remain unresolved. Here we investigate the geochemical and 40Ar-39Ar ages of dredged rocks recovered from the OJP's eastern margin. Volcanic rocks having compositions that match the low-Ti MP basalts are reported for the first time on the OJP and new ~ 96-116 Ma and 67-68 Ma 40Ar-39Ar age data bridge the temporal gap between OJP and HP. These results provide new evidence for the Ontong Java Nui hypothesis and a framework for an integrated tectonomagmatic evolution of the OJP, MP, and HP. The isotopic data imply four mantle components in the source of OJN that are also expressed in present-day Pacific hotspots sources, indicating origin from (and longevity of) the Pacific Large Low Shear-wave Velocity Province.
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Nakanishi M, Miyakoshi M. Revisiting Polarity Indeterminacy of ICA-Decomposed ERPs and Scalp Topographies. Brain Topogr 2023; 36:223-229. [PMID: 36840814 DOI: 10.1007/s10548-023-00944-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 02/01/2023] [Indexed: 02/26/2023]
Abstract
We propose an alternative method to align the polarities of independent components (ICs) for group-level IC cluster analysis. Current methods are presently limited in how indeterminacy of IC polarities is handled, as when multiplying a weight matrix to a time-series IC activation, the result from 1 × 1 and - 1 × - 1 are indistinguishable. We first clarify the EEGLAB's default solution and define it as the iterative correlation maximization as it maximizes the within-cluster correlations of the IC scalp topographies to the cluster mean. We then propose the covariance maximization method, which determines the polarity of ICs based on the sign of the largest eigenvalue of covariance matrix. We compared the two methods on datasets from a published visual event-related potential (ERP) study. The results were similar when both methods were applied to the IC scalp topographies. However, when the proposed method was applied to IC ERPs, the number of clusters that showed significant ERP amplitudes increased from 5 to 9 out of 9 due to minimization of within-cluster ERP amplitude cancellation. Our study confirm covariance maximization provides an alternative solution to post-ICA group-level analysis that can maximize sensitivity of IC ERPs.
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Nakanishi M, Miner A, Jung TP, Graves J. Novel Moving Steady-State Visual Evoked Potential Stimulus to Assess Afferent and Efferent Dysfunction in Multiple Sclerosis. IEEE Trans Neural Syst Rehabil Eng 2023; PP. [PMID: 37022841 DOI: 10.1109/tnsre.2023.3243554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
Afferent and efferent visual dysfunction are prominent features of multiple sclerosis (MS). Visual outcomes have been shown to be robust biomarkers of the overall disease state. Unfortunately, precise measurement of afferent and efferent function is typically limited to tertiary care facilities, which have the equipment and analytical capacity to make these measurements, and even then, only a few centers can accurately quantify both afferent and efferent dysfunction. These measurements are currently unavailable in acute care facilities (ER, hospital floors). We aimed to develop a moving multifocal steady-state visual evoked potential (mfSSVEP) stimulus to simultaneously assess afferent and efferent dysfunction in MS for application on a mobile platform. The brain-computer interface (BCI) platform consists of a head-mounted virtual-reality headset with electroencephalogram (EEG) and electrooculogram (EOG) sensors. To evaluate the platform, we recruited consecutive patients who met the 2017 MS McDonald diagnostic criteria and healthy controls for a pilot cross-sectional study. Nine MS patients (mean age 32.7 years, SD 4.33) and ten healthy controls (24.9 years, SD 7.2) completed the research protocol. The afferent measures based on mfSSVEPs showed a significant difference between the groups (signal-to-noise ratio of mfSSVEPs for controls: 2.50 ± 0.72 vs. MS: 2.04 ± 0.47) after controlling for age (p = 0.049). In addition, the moving stimulus successfully induced smooth pursuit movement that can be measured by the EOG signals. There was a trend for worse smooth pursuit tracking in cases vs. controls, but this did not reach nominal statistical significance in this small pilot sample. This study introduces a novel moving mfSSVEP stimulus for a BCI platform to evaluate neurologic visual function. The moving stimulus showed a reliable capability to assess both afferent and efferent visual functions simultaneously.
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Oka K, Matsumoto A, Tetsuka N, Morioka H, Iguchi M, Ishiguro N, Nagamori T, Takahashi S, Saito N, Tokuda K, Igari H, Fujikura Y, Kato H, Kanai S, Kusama F, Iwasaki H, Furuhashi K, Baba H, Nagao M, Nakanishi M, Kasahara K, Kakeya H, Chikumi H, Ohge H, Azuma M, Tauchi H, Shimono N, Hamada Y, Takajo I, Nakata H, Kawamura H, Fujita J, Yagi T. Clinical characteristics and treatment outcomes of carbapenem-resistant Enterobacterales infections in Japan. J Glob Antimicrob Resist 2022; 29:247-252. [PMID: 35429667 DOI: 10.1016/j.jgar.2022.04.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 04/05/2022] [Accepted: 04/08/2022] [Indexed: 12/31/2022] Open
Abstract
OBJECTIVES The dissemination of difficult-to-treat carbapenem-resistant Enterobacterales (CRE) is of great concern. We clarified the risk factors underlying CRE infection mortality in Japan. METHODS We conducted a retrospective, multicentre, observational cohort study of patients with CRE infections at 28 university hospitals from September 2014 to December 2016, using the Japanese National Surveillance criteria. Clinical information, including patient background, type of infection, antibiotic treatment, and treatment outcome, was collected. The carbapenemase genotype was determined using PCR sequencing. Multivariate analysis was performed to identify the risk factors for 28-day mortality. RESULTS Among the 179 patients enrolled, 65 patients (36.3%) had bloodstream infections, with 37 (20.7%) infections occurring due to carbapenemase-producing Enterobacterales (CPE); all carbapenemases were of IMP-type (IMP-1: 32, IMP-6: 5). Two-thirds of CPE were identified as Enterobacter cloacae complex. Combination therapy was administered only in 46 patients (25.7%), and the 28-day mortality rate was 14.3%. Univariate analysis showed that solid metastatic cancer, Charlson Comorbidity Index ≥3, bloodstream infection, pneumonia, or empyema, central venous catheters, mechanical ventilation, and prior use of quinolones were significant risk factors for mortality. Multivariate analysis revealed that mechanical ventilation (OR: 6.71 [1.42-31.6], P = 0.016), solid metastatic cancers (OR: 5.63 [1.38-23.0], P = 0.016), and bloodstream infections (OR: 3.49 [1.02-12.0], P = 0.046) were independent risk factors for 28-day mortality. CONCLUSION The significant risk factors for 28-day mortality in patients with CRE infections in Japan are mechanical ventilation, solid metastatic cancers, and bloodstream infections.
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Wei CS, Keller CJ, Li J, Lin YP, Nakanishi M, Wagner J, Wu W, Zhang Y, Jung TP. Editorial: Inter- and Intra-subject Variability in Brain Imaging and Decoding. Front Comput Neurosci 2021; 15:791129. [PMID: 34912203 PMCID: PMC8667221 DOI: 10.3389/fncom.2021.791129] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 10/13/2021] [Indexed: 11/24/2022] Open
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Yokotani A, Takahashi F, Aoyama R, Kamoshida G, Kosaka T, Nakanishi M, Fujita N. Differences in the sequence of PlcR transcriptional regulator binding site affect sphingomyelinase production in Bacillus cereus. Microbiol Immunol 2021; 66:157-165. [PMID: 34914844 DOI: 10.1111/1348-0421.12959] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 12/08/2021] [Accepted: 12/12/2021] [Indexed: 11/28/2022]
Abstract
Bacillus cereus is an opportunistic pathogen that often causes severe infections such as bacteremia, with sphingomyelinase (SMase) being a crucial virulence factor. Although many strains of B. cereus carry the SMase gene, they are classified as SMase-producing and non-producing strains. The reason for different SMase production among B. cereus strains remains unknown. In this study, we investigated the relationship between SMase and the PlcR transcriptional regulation system to clarify the mechanism leading to varied SMase production among B. cereus strains. We analyzed the sequence of the PlcR box, which is a transcriptional regulator binding site, located at the promoter region of SMase and phosphatidylcholine-specific phospholipase C. Based on differences in the PlcR box sequences, we classified the B. cereus strains into three groups (I, II, and III). SMase expression and activity were hardly detected in Group III strains. In Group I strains, SMase activity and its expression were maximal at the onset of the stationary phase and decreased during the stationary phase, whereas those were maintained during the stationary phase in Group II stains. On injection of B. cereus strains into mice or incubation with macrophages for phagocytosis assay, the SMase-producing Group I and II strains showed higher pathogenicity than Group III strains. These findings suggest that PlcR box sequence in B. cereus affects the production of SMase, which may provide important clinical information for the detection of highly pathogenic B. cereus strains. This article is protected by copyright. All rights reserved.
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Wong CM, Wang Z, Nakanishi M, Wang B, Rosa A, Chen CLP, Jung TP, Wan F. Online Adaptation Boosts SSVEP-Based BCI Performance. IEEE Trans Biomed Eng 2021; 69:2018-2028. [PMID: 34882542 DOI: 10.1109/tbme.2021.3133594] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
OBJECTIVE A user-friendly steady-state visual evoked potential (SSVEP)-based brain-computer interface (BCI) prefers no calibration for its target recognition algorithm, however, the existing calibration-free schemes perform still far behind their calibration-based counterparts. To tackle this issue, learning online from the subject's unlabeled data is investigated as a potential approach to boost the performance of the calibration-free SSVEP-based BCIs. METHODS An online adaptation scheme is developed to tune the spatial filters using the online unlabeled data from previous trials, and then developing the online adaptive canonical correlation analysis (OACCA) method. RESULTS A simulation study on two public SSVEP datasets (Dataset I and II) with a total of 105 subjects demonstrated that the proposed online adaptation scheme can boost the CCA's averaged information transfer rate (ITR) from 94.60 to 158.87 bits/min in Dataset I and from 85.80 to 123.91 bits/min in Dataset II. Furthermore, in our online experiment it boosted the CCA's ITR from 55.81 bits/min to 95.73 bits/min. More importantly, this online adaptation scheme can be easily combined with any spatial filtering-based algorithms to achieve online learning. CONCLUSION By online adaptation, the proposed OACCA performed much better than the calibration-free CCA, and comparable to the calibration-based algorithms. SIGNIFICANCE This work provides a general way for the SSVEP-based BCIs to learn online from unlabeled data and thus avoid calibration.
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Koshiyama D, Miyakoshi M, Joshi YB, Nakanishi M, Tanaka-Koshiyama K, Sprock J, Light GA. Source decomposition of the frontocentral auditory steady-state gamma band response in schizophrenia patients and healthy subjects. Psychiatry Clin Neurosci 2021; 75:172-179. [PMID: 33470494 DOI: 10.1111/pcn.13201] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 01/12/2021] [Accepted: 01/16/2021] [Indexed: 12/27/2022]
Abstract
AIM Gamma-band auditory steady-state response (ASSR) is a neurophysiologic index that is increasingly used as a translational biomarker in the development of treatments of neuropsychiatric disorders. While gamma-band ASSR is generated by distributed networks of highly interactive temporal and frontal cortical sources, the majority of human gamma-band ASSR studies using electroencephalography (EEG) highlight activity from only a single frontocentral scalp site, Fz, where responses tend to be largest and reductions in schizophrenia patients are most evident. However, no previous study has characterized the relative source contributions to Fz, which is a necessary step to improve the concordance of preclinical and clinical EEG studies. METHODS A novel method to back-project the contributions of independent cortical source components was applied to assess the independent sources and their proportional contributions to Fz as well as source-resolved responses in 432 schizophrenia patients and 294 healthy subjects. RESULTS Independent contributions of gamma-band ASSR to Fz were detected from orbitofrontal, bilateral superior/middle/inferior temporal, bilateral middle frontal, and posterior cingulate gyri in both groups. In contrast to expectations, the groups showed comparable source contribution weight to gamma-band ASSR at Fz. While gamma-band ASSR reductions at Fz were present in schizophrenia patients consistent with previous studies, no group differences in individual source-level responses to Fz were detected. CONCLUSION Small differences in multiple independent sources summate to produce scalp-level differences at Fz. The identification of independent source contributions to a single scalp sensor represents a promising methodology for measuring dissociable and homologous biomarker targets in future translational studies.
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Ozawa Y, Harutani Y, Oyanagi J, Murakami E, Sato K, Akamatsu H, Hayata A, Teraoka S, Ueda H, Kitamura Y, Fukuoka J, Tokudome N, Nakanishi M, Koh Y, Yamamoto N. P60.08 Impact of CD24 and CD47 Tumor Expression on Efficacy and Serum Cytokine Alteration with PD-1/L1 Inhibitors in Non-Small Cell Lung cancer. J Thorac Oncol 2021. [DOI: 10.1016/j.jtho.2021.01.967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Ushigome E, Yamazaki M, Hamaguchi M, Ito T, Matsubara S, Tsuchido Y, Kasamatsu Y, Nakanishi M, Fujita N, Fukui M. Usefulness and Safety of Remote Continuous Glucose Monitoring for a Severe COVID-19 Patient with Diabetes. Diabetes Technol Ther 2021; 23:78-80. [PMID: 32639844 DOI: 10.1089/dia.2020.0237] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Diabetes is associated with mortality and severity of coronavirus disease (COVID-19). Protecting against infection in health care workers at high risk of COVID-19 is critical. This report investigates the usefulness and safety of remote continuous glucose monitoring (CGM) in a patient with diabetes and severe interstitial pneumonia caused by the coronavirus disease. The Dexcom G4 Platinum CGM system® was used to monitor blood glucose (BG) levels from outside the patient's isolation room. Continuous insulin infusion rates and boluses were determined based on the patient's BG levels. Real-time CGM made it possible to track BG trends and prevent dramatic variations in BG, although the rate of insulin infusion changed dynamic. Furthermore, the need for health care workers to enter the isolation room was minimized because the Dexcom G4 Platinum CGM system can evaluate from a distance of up to 6.0 m.
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Chiang KJ, Wei CS, Nakanishi M, Jung TP. Boosting template-based SSVEP decoding by cross-domain transfer learning. J Neural Eng 2020; 18. [PMID: 33203813 DOI: 10.1088/1741-2552/abcb6e] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 11/16/2020] [Indexed: 11/12/2022]
Abstract
OBJECTIVE This study aims to establish a generalized transfer-learning framework for boosting the performance of steady-state visual evoked potential(SSVEP)-based brain-computer interfaces (BCIs) by leveraging cross-domain data transferring. APPROACH We enhanced the state-of-the-art template-based SSVEP decoding through incorporating a least-squares transformation (LST)-based transfer learning to leverage calibration data across multiple domains (sessions, subjects, and EEG montages). MAIN RESULTS Study results verified the efficacy of LST in obviating the variability of SSVEPs when transferring existing data across domains. Furthermore, the LST-based method achieved significantly higher SSVEP-decoding accuracy than the standard task-related component analysis (TRCA)-based method and the non-LST naive transfer-learning method. SIGNIFICANCE This study demonstrated the capability of the LST-based transfer learning to leverage existing data across subjects and/or devices with an in-depth investigation of its rationale and behavior in various circumstances. The proposed framework significantly improved the SSVEP decoding accuracy over the standard TRCA approach when calibration data are limited. Its performance in calibration reduction could facilitate plug-and-play SSVEP-based BCIs and further practical applications.
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Lewis A, Beresford A, Chambers MS, Clark G, Hartley DC, Hirst KL, Higashino M, Kawahadara S, Nakanishi M, Saito T, Imagawa A, Habashita H, Maidment S, Macleod AM, Owens AP, Rae A, Rouse C, Wishart G. Discovery of ONO-8590580: A novel, potent and selective GABA A α 5 negative allosteric modulator for the treatment of cognitive disorders. Bioorg Med Chem Lett 2020; 30:127536. [PMID: 32898695 DOI: 10.1016/j.bmcl.2020.127536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 08/28/2020] [Accepted: 08/31/2020] [Indexed: 10/23/2022]
Abstract
The identification and SAR development of a series of negative allosteric modulators of the GABAA α5 receptor is described. This novel series of compounds was optimised to provide analogues with high GABAA α5 binding affinity, high α5 negative allosteric modulatory activity, good functional subtype selectivity and low microsomal turnover, culminating in identification of ONO-8590580.
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Chiang KJ, Nakanishi M, Jung TP. Statistically Optimized Spatial Filtering in Decoding Steady-State Visual Evoked Potentials Based on Task-Related Component Analysis. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2020:3070-3073. [PMID: 33018653 DOI: 10.1109/embc44109.2020.9176205] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Task-related component analysis (TRCA) has been the most effective spatial filtering method in implementing high-speed brain-computer interfaces (BCIs) based on steady-state visual evoked potentials (SSVEPs). TRCA is a data-driven method, in which spatial filters are optimized to maximize inter-trial covariance of time-locked electroencephalographic (EEG) data, formulated as a generalized eigenvalue problem. Although multiple eigenvectors can be obtained by TRCA, the traditional TRCA-based SSVEP detection considered only one that corresponds to the largest eigenvalue to reduce its computational cost. This study proposes using multiple eigen-vectors to classify SSVEPs. Specifically, this study integrates a task consistency test, which statistically identifies whether the component reconstructed by each eigenvector is task-related or not, with the TRCA-based SSVEP detection method. The proposed method was evaluated by using a 12-class SSVEP dataset recorded from 10 subjects. The study results indicated that the task consistency test usually identified and suggested more than one eigenvectors (i.e., spatial filters). Further, the use of additional spatial filters significantly improved the classification accuracy of the TRCA-based SSVEP detection.
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Nakanishi M, Xu M, Wang Y, Chiang KJ, Han J, Jung TP. Questionable Classification Accuracy Reported in "Designing a Sum of Squared Correlations Framework for Enhancing SSVEP-Based BCIs". IEEE Trans Neural Syst Rehabil Eng 2020; 28:1042-1043. [PMID: 32078554 DOI: 10.1109/tnsre.2020.2974272] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
This commentary presents a replication study to verify the effectiveness of a sum of squared correlations (SSCOR)-based steady-state visual evoked potentials (SSVEPs) decoding method proposed by Kumar et al.. We implemented the SSCOR-based method in accordance with their descriptions and estimated its classification accuracy using a benchmark SSVEP dataset with cross validation. Our results showed significantly lower classification accuracy compared with the ones reported in Kumar et al.'s study. We further investigated the sources of performance discrepancy by simulating data leakage between training and test datasets. The classification performance of the simulation was remarkably similar to those reported by Kumar et al.. We, therefore, question the validity of evaluation and conclusions drawn in Kumar et al.'s study.
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Kanoga S, Nakanishi M, Murai A, Tada M, Kanemura A. Erratum: Robustness analysis of decoding SSVEPs in humans with head movements using a moving visual flicker (2019 J. Neural Eng. 17 016009). J Neural Eng 2020. [DOI: 10.1088/1741-2552/ab6444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Izumida E, Suzawa T, Miyamoto Y, Yamada A, Otsu M, Saito T, Yamaguchi T, Nishimura K, Ohtaka M, Nakanishi M, Yoshimura K, Sasa K, Takimoto R, Uyama R, Shirota T, Maki K, Kamijo R. Functional Analysis of PTH1R Variants Found in Primary Failure of Eruption. J Dent Res 2020; 99:429-436. [PMID: 31986066 DOI: 10.1177/0022034520901731] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Although many variants of the parathyroid hormone 1 receptor (PTH1R) gene are known to be associated with primary failure of eruption (PFE), the mechanisms underlying the link remains poorly understood. We here performed functional analyses of PTH1R variants reported in PFE patients-namely, 356C>T (P119L), 395C>T (P132L), 439C>T (R147C), and 1148G>A (R383Q)-using HeLa cells with a lentiviral vector-mediated genetic modification. Two particular variants, P119L and P132L, had severe reduction in a level of N-linked glycosylation when compared with wild-type PTH1R, whereas the other 2 showed modest alteration. PTH1R having P119L or P132L showed marked decrease in the affinity to PTH1-34, which likely led to severely impaired cAMP accumulation upon stimulation in cells expressing these mutants, highlighting the importance of these 2 amino acid residues for ligand-mediated proper functioning of PTH1R. To further gain insights into PTH1R functions, we established the induced pluripotent stem cell (iPSC) lines from a patient with PFE and the heterozygous P132L mutation. When differentiated into osteoblastic-lineage cells, PFE-iPSCs showed no abnormality in mineralization. The mRNA expression of RUNX2, SP7, and BGLAP, the osteoblastic differentiation-related genes, and that of PTH1R were augmented in both PFE-iPSC-derived cells and control iPSC-derived cells in the presence of bone morphogenetic protein 2. Also, active vitamin D3 induced the expression of RANKL, a major key factor for osteoclastogenesis, equally in osteoblastic cells derived from control and PFE-iPSCs. In sharp contrast, exposure to PTH1-34 resulted in no induction of RANKL mRNA expression in the cells expressing P132L variant PTH1R, consistent with the idea that a type of heterozygous PTH1R gene mutation would spoil PTH-dependent response in osteoblasts. Collectively, this study demonstrates a link between PFE-associated genetic alteration and causative functional impairment of PTH1R, as well as a utility of iPSC-based disease modeling for future elucidation of pathogenesis in genetic disorders, including PFE.
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Kodama M, Nakanishi M, Fujita N, Inoue T, Oka K, Kanda K, Yaku H. [A Case of Aortic Graft Infection Due to Listeria monocytogenes Detected by Microarray-Based, Multiplexed, Automated Molecular Diagnosis System]. RINSHO BISEIBUTSU JINSOKU SHINDAN KENKYUKAI SHI = JARMAM : JOURNAL OF THE ASSOCIATION FOR RAPID METHOD AND AUTOMATION IN MICROBIOLOGY 2019; 29:19-24. [PMID: 31856574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A 80-year-old man was transferred to our hospital for hemoptysis caused by erosion(perforation) of thoracic aortic stent graft infection into the airway. Blood cultures on admission detected Gram-positive rods, and a microarray-based, multiplexed, automated molecular diagnosis instrument (Verigene® system) identified Listeria spp. Although Listeria monocytogenes is rare organism of stent graft infection, we were able to start appropriate antibiotic therapy on the second hospital day due to rapid identification of bacteria. Verigene® system is considered to be useful in severe infectious diseases including stent graft infections, even if the causative organism is rare.
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Kanoga S, Nakanishi M, Murai A, Tada M, Kanemura A. Robustness analysis of decoding SSVEPs in humans with head movements using a moving visual flicker. J Neural Eng 2019; 17:016009. [PMID: 31722321 DOI: 10.1088/1741-2552/ab5760] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE The emergence of mobile electroencephalogram (EEG) platforms have expanded the use cases of brain-computer interfaces (BCIs) from laboratory-oriented experiments to our daily life. In challenging situations where humans' natural behaviors such as head movements are unrestrained, various artifacts could deteriorate the performance of BCI applications. This paper explored the effect of muscular artifacts generated by participants' head movements on the signal characteristics and classification performance of steady-state visual evoked potentials (SSVEPs). APPROACH A moving visual flicker was employed to induce not only SSVEPs but also horizontal and vertical head movements at controlled speeds, leading to acquiring EEG signals with intensity-manipulated muscular artifacts. To properly induce neck muscular activities, a laser light was attached to participants' heads to give visual feedback; the laser light indicates the direction of the head independently from eye movements. The visual stimulus was also modulated by four distinct frequencies (10, 11, 12, and 13 Hz). The amplitude and signal-to-noise ratio (SNR) were estimated to quantify the effects of head movements on the signal characteristics of the elicited SSVEPs. The frequency identification accuracy was also estimated by using well-established decoding algorithms including calibration-free and fully-calibrated approaches. MAIN RESULTS The amplitude and SNR of SSVEPs tended to deteriorate when the participants moved their heads, and this tendency was significantly stronger in the vertical head movements than in the horizontal movements. The frequency identification accuracy also deteriorated in proportion to the speed of head movements. Importantly, the accuracy was significantly higher than its chance-level regardless of the level of artifact contamination and algorithms. SIGNIFICANCE The results suggested the feasibility of decoding SSVEPs in humans freely moving their head directions, facilitating the real-world applications of mobile BCIs.
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Kanoga S, Nakanishi M, Murai A, Tada M, Kanemura A. Semi-simulation Experiments for Quantifying the Performance of SSVEP-based BCI after Reducing Artifacts from Trapezius Muscles. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2019; 2018:4824-4827. [PMID: 30441426 DOI: 10.1109/embc.2018.8513180] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Muscular artifacts often contaminate electroencephalograms (EEGs) and deteriorate the performance of brain-computer interfaces (BCIs). Although many artifact reduction techniques are available, most of the studies have focused on their reduction ability (i.e. reconstruction errors), and it has been missing to evaluate their effect on the performance of BCIs. This study aims at evaluating the performance of a state-of-the-art muscular artifact reduction technique on a scenario of a steady-state visual evoked potentials (SSVEPs)based BCI. The performance was evaluated based on a semisimulation setting using a benchmark dataset of SSVEPs artificially contaminated by muscular artifacts acquired from the trapezius. Our results showed that combining the artifact reduction method and the classification algorithm based on the task-related component analysis gained improved classification accuracy. Interestingly, the artifact reduction setting minimizing the reconstruction errors, i.e. elaborately recovering the true EEG waveforms, was inconsistent to the one maximizing the classification performance. The results suggest that artifact reduction methods should be tuned so as to tomaximize performance of BCIs.
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Yamamoto-Hanada K, Haruna M, Nakanishi M, Saito-Abe M, Ohya Y. P358 DEVELOPMENT OF EDUCATION PROGRAM FOR OFFSPRING ALLERGY DURING PREGNANCY -PILOT STUDY-. Ann Allergy Asthma Immunol 2019. [DOI: 10.1016/j.anai.2019.08.337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Chan WH, Chiang KJ, Nakanishi M, Wang YT, Jung TP. Evaluating the Performance of Non-Hair SSVEP-Based BCIs Featuring Template-Based Decoding Methods. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2019; 2018:1972-1975. [PMID: 30440785 DOI: 10.1109/embc.2018.8512662] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Our previous study has demonstrated the feasibility of employing non-hair-bearing electrodes to build a Steadystate Visual Evoked Potential (SSVEP)-based Brain-Computer Interface (BCI) system, relaxing technical barriers in preparation time and offering an ease-of-use apparatus. The signal quality of the SSVEPs and the resultant performance of the non-hair BCI, however, did not close upon those reported in the state-of-the-art BCI studies based on the electroencephalogram (EEG) measured from the occipital regions. Recently, advanced decoding algorithms such as task-related component analysis have made a breakthrough in enhancing the signal quality of the occipital SSVEPs and the performance of SSVEP-based BCIs in a well-controlled laboratory environment. However, it remains unclear if the advanced decoding algorithms can extract highfidelity SSVEPs from the non-hair EEG and enhance the practicality of non-hair BCIs in real-world environments. This study aims to quantitatively evaluate whether, and if so, to what extent the non-hair BCIs can leverage the state-of-art decoding algorithms. Eleven healthy individuals participated in a 5-target SSVEP BCI experiment. A high-density EEG cap recorded SSVEPs from both hair-covered and non-hair-bearing regions. By evaluating and demonstrating the accessibility of nonhair-bearing behind-ear signals, our assessment characterized constraints on data length, trial numbers, channels, and their relationships with the decoding algorithms, providing practical guidelines to optimize SSVEP-based BCI systems in real-life applications.
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