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Alexeev GD, Alexeev MG, Alice C, Amoroso A, Andrieux V, Anosov V, Asatryan S, Augsten K, Augustyniak W, Azevedo CDR, Badelek B, Barth J, Beck R, Beckers J, Bedfer Y, Bernhard J, Bodlak M, Bradamante F, Bressan A, Chang WC, Chatterjee C, Chiosso M, Chumakov AG, Chung SU, Cicuttin A, Correia PMM, Crespo ML, D'Ago D, Dalla Torre S, Dasgupta SS, Dasgupta S, Delcarro F, Denisenko I, Denisov OY, Donskov SV, Doshita N, Dreisbach C, Dünnweber W, Dusaev RR, Ecker D, Eremeev D, Faccioli P, Faessler M, Finger M, Finger M, Fischer H, Flöthner KJ, Florian W, Friedrich JM, Frolov V, Garcia Ordòñez LG, Gautheron F, Gavrichtchouk OP, Gerassimov S, Giarra J, Giordano D, Grasso A, Gridin A, Grosse Perdekamp M, Grube B, Grüner M, Guskov A, Haas P, von Harrach D, Hoffmann M, Hoghmrtsyan A, d'Hose N, Hsieh CY, Huber S, Ishimoto S, Ivanov A, Iwata T, Jary V, Joosten R, Kabuß E, Kaspar F, Kerbizi A, Ketzer B, Khatun A, Khaustov GV, Klasek T, Klein F, Koivuniemi JH, Kolosov VN, Kondo Horikawa K, Konorov I, Konstantinov VF, Korzenev AY, Kotzinian AM, Kouznetsov OM, Koval A, Kral Z, Krinner F, Kunne F, Kurek K, Kurjata RP, Kveton A, Lavickova K, Levorato S, Lian YS, Lichtenstadt J, Lin PJ, Longo R, Lyubovitskij VE, Maggiora A, Magnon A, Makke N, Mallot GK, Maltsev A, Martin A, Marzec J, Matoušek J, Matsuda T, Mattson G, Menezes Pires C, Metzger F, Meyer M, Meyer W, Mikhailov YV, Mikhasenko M, Mitrofanov E, Miura D, Miyachi Y, Molina R, Moretti A, Movsisyan A, Nagaytsev A, Neyret D, Niemiec M, Nový J, Nowak WD, Nukazuka G, Olshevsky AG, Ostrick M, Panzieri D, Parsamyan B, Paul S, Pekeler H, Peng JC, Pešek M, Peshekhonov DV, Pešková M, Platchkov S, Pochodzalla J, Polyakov VA, Quaresma M, Quintans C, Reicherz G, Riedl C, Ryabchikov DI, Rychter A, Rymbekova A, Samoylenko VD, Sandacz A, Sarkar S, Savin IA, Sbrizzai G, Schmieden H, Selyunin A, Sharko K, Sinha L, Spülbeck D, Srnka A, Stolarski M, Sulc M, Suzuki H, Takanashi Y, Tessaro S, Tessarotto F, Thiel A, Tosello F, Townsend A, Triloki T, Tskhay V, Valinoti B, Veit BM, Veloso JFCA, Ventura B, Vijayakumar A, Virius M, Wagner M, Wallner S, Zaremba K, Zavertyaev M, Zemko M, Zemlyanichkina E, Ziembicki M. High-Statistics Measurement of Collins and Sivers Asymmetries for Transversely Polarized Deuterons. PHYSICAL REVIEW LETTERS 2024; 133:101903. [PMID: 39303248 DOI: 10.1103/physrevlett.133.101903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 03/22/2024] [Accepted: 05/08/2024] [Indexed: 09/22/2024]
Abstract
New results are presented on a high-statistics measurement of Collins and Sivers asymmetries of charged hadrons produced in deep inelastic scattering of muons on a transversely polarized ^{6}LiD target. The data were taken in 2022 with the COMPASS spectrometer using the 160 GeV muon beam at CERN, statistically balancing the existing data on transversely polarized proton targets. The first results from about two-thirds of the new data have total uncertainties smaller by up to a factor of three compared to the previous deuteron measurements. Using all the COMPASS proton and deuteron results, both the transversity and the Sivers distribution functions of the u and d quark, as well as the tensor charge in the measured x range are extracted. In particular, the accuracy of the d quark results is significantly improved.
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Alexeev GD, Alexeev MG, Alice C, Amoroso A, Andrieux V, Anosov V, Augsten K, Augustyniak W, Azevedo CDR, Badelek B, Barth J, Beck R, Beckers J, Bedfer Y, Bernhard J, Bodlak M, Bradamante F, Bressan A, Chang WC, Chatterjee C, Chiosso M, Chumakov AG, Chung SU, Cicuttin A, Correia PMM, Crespo ML, D'Ago D, Dalla Torre S, Dasgupta SS, Dasgupta S, Delcarro F, Denisenko I, Denisov OY, Donskov SV, Doshita N, Dreisbach C, Dünnweber W, Dusaev RR, Ecker D, Eremeev D, Faccioli P, Faessler M, Finger M, Finger M, Fischer H, Flöthner KJ, Florian W, Friedrich JM, Frolov V, Garcia Ordòñez LG, Gautheron F, Gavrichtchouk OP, Gerassimov S, Giarra J, Giordano D, Grasso A, Gridin A, Grosse Perdekamp M, Grube B, Grüner M, Guskov A, Haas P, von Harrach D, Heitz R, Hoffmann M, d'Hose N, Hsieh CY, Huber S, Ishimoto S, Ivanov A, Iwata T, Jary V, Joosten R, Kabuß E, Kaspar F, Kerbizi A, Ketzer B, Khatun A, Khaustov GV, Klein F, Koivuniemi JH, Kolosov VN, Kondo Horikawa K, Konorov I, Konstantinov VF, Korzenev AY, Kotzinian AM, Kouznetsov OM, Koval A, Kral Z, Krinner F, Kunne F, Kurek K, Kurjata RP, Kveton A, Lavickova K, Levorato S, Lian YS, Lichtenstadt J, Lin PJ, Longo R, Lyubovitskij VE, Maggiora A, Magnon A, Makke N, Mallot GK, Maltsev A, Martin A, Marzec J, Matoušek J, Matsuda T, Mattson G, Menezes Pires C, Metzger F, Meyer M, Meyer W, Mikhailov YV, Mikhasenko M, Mitrofanov E, Miura D, Miyachi Y, Molina R, Moretti A, Nagaytsev A, Neyret D, Niemiec M, Nový J, Nowak WD, Nukazuka G, Olshevsky AG, Ostrick M, Panzieri D, Parsamyan B, Paul S, Pekeler H, Peng JC, Pešek M, Peshekhonov DV, Pešková M, Platchkov S, Pochodzalla J, Polyakov VA, Quaresma M, Quintans C, Reicherz G, Riedl C, Ryabchikov DI, Rychter A, Rymbekova A, Samoylenko VD, Sandacz A, Sarkar S, Savada T, Savin IA, Sbrizzai G, Schmieden H, Selyunin A, Sharko K, Sinha L, Spülbeck D, Srnka A, Stolarski M, Sulc M, Suzuki H, Tessaro S, Tessarotto F, Thiel A, Tosello F, Townsend A, Triloki T, Tskhay V, Valinoti B, Veit BM, Veloso JFCA, Ventura B, Vijayakumar A, Virius M, Wagner M, Wallner S, Zaremba K, Zavertyaev M, Zemko M, Zemlyanichkina E, Ziembicki M. Final COMPASS Results on the Transverse-Spin-Dependent Azimuthal Asymmetries in the Pion-Induced Drell-Yan Process. PHYSICAL REVIEW LETTERS 2024; 133:071902. [PMID: 39213572 DOI: 10.1103/physrevlett.133.071902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 04/27/2024] [Accepted: 05/14/2024] [Indexed: 09/04/2024]
Abstract
The COMPASS Collaboration performed measurements of the Drell-Yan process in 2015 and 2018 using a 190 GeV/c π^{-} beam impinging on a transversely polarized ammonia target. Combining the data of both years, we present final results on the amplitudes of five azimuthal modulations, which correspond to transverse-spin-dependent azimuthal asymmetries (TSAs) in the dimuon production cross section. Three of them probe the nucleon leading-twist Sivers, transversity, and pretzelosity transverse-momentum dependent (TMD) parton distribution functions (PDFs). The other two are induced by subleading effects. These TSAs provide unique new inputs for the study of the nucleon TMD PDFs and their universality properties. In particular, the Sivers TSA observed in this measurement is consistent with the fundamental QCD prediction of a sign change of naive time-reversal-odd TMD PDFs when comparing the Drell-Yan process with deep inelastic scattering. Also, within the context of model predictions, the observed transversity TSA is consistent with the expectation of a sign change for the Boer-Mulders function.
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Ketterer MC, Shiraliyev K, Arndt S, Aschendorff A, Beck R. Implantation and reimplantation: epidemiology, etiology and pathogenesis over the last 30 years. Eur Arch Otorhinolaryngol 2024; 281:4095-4102. [PMID: 38507077 PMCID: PMC11266378 DOI: 10.1007/s00405-024-08568-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 02/18/2024] [Indexed: 03/22/2024]
Abstract
INTRODUCTION Due to the increasing number of cochlear implant (CI) recipients, growing indications, and the aging population, the reimplantation of CI recipients has become a focus of attention. The aim of this study is to examine the causes, timing, and postoperative speech understanding in a large cohort over the past 30 years. METHODS A retrospective data analysis was conducted on over 4000 CI recipients and 214 reimplanted children and adults from 1993 to 2020. This involved collecting and comparing data on causes, manufacturer information, and demographic data. In addition, a comparison of speech understanding in Freiburg monosyllables and numbers before and after reimplantation was carried out. RESULTS Children did not exhibit elevated rates of reimplantation. The overall reimplantation rate in the entire cohort was 5%. The CI overall survival rate after 10 years in the entire cohort was 95.2%. Device failure was the most common reason for reimplantation, with 48% occurring within the first 5 years after implantation. The second most common reason was medical complications, with the risk of reimplantation decreasing as more time passed since the initial implantation. There were no significant differences in Freiburg numbers and monosyllable comprehension before and after reimplantation, both in the overall cohort and in the subcohorts based on indications. Even a technical upgrade did not result in a significant improvement in speech understanding. DISCUSSION There was no significant difference in the frequency of reimplantation based on patient age, especially when comparing children and adults. Device failure is by far the most common indication for reimplantation, with no significant difference in implant survival between manufacturers. Patients most often choose the same manufacturer for reimplantation. The likelihood of reimplantation decreases with increasing time since the initial implantation. The indication for reimplantation should be carefully considered, as on average, no improved speech understanding is achieved, regardless of the cause, even with a technical upgrade.
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Pot D, Worman Z, Baumann A, Pathak S, Beck R, Beck E, Thayer K, Davidsen TM, Kim E, Davis-Dusenbery B, Otridge J, Pihl T, Barnholtz-Sloan JS, Kerlavage AR. NCI Cancer Research Data Commons: Cloud-Based Analytic Resources. Cancer Res 2024; 84:1396-1403. [PMID: 38488504 PMCID: PMC11063685 DOI: 10.1158/0008-5472.can-23-2657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Revised: 01/26/2024] [Accepted: 03/05/2024] [Indexed: 03/19/2024]
Abstract
The NCI's Cloud Resources (CR) are the analytical components of the Cancer Research Data Commons (CRDC) ecosystem. This review describes how the three CRs (Broad Institute FireCloud, Institute for Systems Biology Cancer Gateway in the Cloud, and Seven Bridges Cancer Genomics Cloud) provide access and availability to large, cloud-hosted, multimodal cancer datasets, as well as offer tools and workspaces for performing data analysis where the data resides, without download or storage. In addition, users can upload their own data and tools into their workspaces, allowing researchers to create custom analysis workflows and integrate CRDC-hosted data with their own. See related articles by Brady et al., p. 1384, Wang et al., p. 1388, and Kim et al., p. 1404.
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Sharps K, Foster J, Vieno M, Beck R, Hayes F. Ozone pollution contributes to the yield gap for beans in Uganda, East Africa, and is co-located with other agricultural stresses. Sci Rep 2024; 14:8026. [PMID: 38580752 PMCID: PMC10997645 DOI: 10.1038/s41598-024-58144-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 03/26/2024] [Indexed: 04/07/2024] Open
Abstract
Air quality negatively impacts agriculture, reducing the yield of staple food crops. While measured data on African ground-level ozone levels are scarce, experimental studies demonstrate the damaging impact of ozone on crops. Common beans (Phaseolus vulgaris), an ozone-sensitive crop, are widely grown in Uganda. Using modelled ozone flux, agricultural surveys, and a flux-effect relationship, this study estimates yield and production losses due to ozone for Ugandan beans in 2015. Analysis at this scale allows the use of localised data, and results can be presented at a sub-regional level. Soil nutrient stress, drought, flood risk, temperature and deprivation were also mapped to investigate where stresses may coincide. Average bean yield losses due to ozone were 17% and 14% (first and second growing season respectively), equating to 184 thousand tonnes production loss. However, for some sub-regions, losses were up to 27.5% and other crop stresses also coincided in these areas. This methodology could be applied widely, allowing estimates of ozone impact for countries lacking air quality and/or experimental data. As crop productivity is below its potential in many areas of the world, changing agricultural practices to mitigate against losses due to ozone could help to reduce the crop yield gap.
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Afzal F, Spieker K, Hurck P, Abt S, Achenbach P, Adlarson P, Ahmed Z, Akondi CS, Annand JRM, Arends HJ, Bashkanov M, Beck R, Biroth M, Borisov N, Braghieri A, Briscoe WJ, Cividini F, Collicott C, Costanza S, Denig A, Dieterle M, Downie EJ, Drexler P, Fegan S, Gardner S, Ghosal D, Glazier DI, Gorodnov I, Gradl W, Gurevich D, Heijkenskjöld L, Hornidge D, Huber GM, Kashevarov VL, Kay SJD, Korolija M, Krusche B, Lazarev A, Livingston K, Lutterer S, MacGregor IJD, Macrae RG, Manley DM, Martel PP, Miskimen R, Mocanu M, Mornacchi E, Mullen C, Neganov A, Neiser A, Oberle M, Ostrick M, Otte PB, Paudyal D, Pedroni P, Powell A, Reicherz G, Rostomyan T, Sfienti C, Sokhoyan V, Steffen O, Strakovsky II, Strub T, Supek I, Thiel A, Thiel M, Thomas A, Usov YA, Wagner S, Walford NK, Watts DP, Werthmüller D, Wettig J, Witthauer L, Wolfes M, Zachariou N. First Measurement Using Elliptically Polarized Photons of the Double-Polarization Observable E for γp→pπ^{0} and γp→nπ^{+}. PHYSICAL REVIEW LETTERS 2024; 132:121902. [PMID: 38579200 DOI: 10.1103/physrevlett.132.121902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 01/31/2024] [Accepted: 02/02/2024] [Indexed: 04/07/2024]
Abstract
We report the measurement of the helicity asymmetry E for the pπ^{0} and nπ^{+} final states using, for the first time, an elliptically polarized photon beam in combination with a longitudinally polarized target at the Crystal Ball experiment at MAMI. The results agree very well with data that were taken with a circularly polarized photon beam, showing that it is possible to simultaneously measure polarization observables that require linearly (e.g., G) and circularly polarized photons (e.g., E) and a longitudinally polarized target. The new data cover a photon energy range 270-1400 MeV for the pπ^{0} final state (230-842 MeV for the nπ^{+} final state) and the full range of pion polar angles, θ, providing the most precise measurement of the observable E. A moment analysis gives a clear observation of the pη cusp in the pπ^{0} final state.
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Beck R, Aschendorff A, Arndt S, Hildenbrand T, Rauch AK, Ketterer MC. Evaluation of insertion quality of a slim perimodiolar electrode array. Eur Arch Otorhinolaryngol 2024; 281:1215-1220. [PMID: 37773530 PMCID: PMC10858093 DOI: 10.1007/s00405-023-08212-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 08/25/2023] [Indexed: 10/01/2023]
Abstract
OBJECTIVES The influence of cochlear morphology and electrode array design on scalar position and dislocation rates is of great interest in CI surgery. The aim of this study is to evaluate scalar position and specific points of dislocation in relation to cochlear morphology in patients implanted with a new slim perimodiolar electrode array. MATERIALS AND METHODS Patients were implanted using the slim modiolar electrode array (= SMA) (= 532/632 electrode array of Cochlear™). Postoperative imaging was performed via cone beam computed tomography (CBCT) and the scans were analyzed regarding cochlear morphology (distances A and B and cochlear height), scalar location of the electrode array, basal insertion depth and apical insertion angle. Furthermore, electrode array design and surgical protocols were evaluated. RESULTS 81 ears implanted with the SMA were retrospectively included. We evaluated 3 electrode array tip fold over intraoperatively via X-ray imaging and performed revision during the same surgery. The CBCT scans showed 76 initial scala tympani (ST) insertions without dislocation. Two ears showed a dislocated array, one at 77° and the other at 163°. Three arrays were inserted into scala vestibuli (SV) via cochleostomy. These patients showed no signs of obliteration. Cochlear morphology showed no influence on angular insertion depth and scalar position. CONCLUSIONS The SMA showed a very low rate of scalar dislocations due to its slim electrode array design (2.7%). We could find a learning curve regarding the handling and the risk of dislocation and tip fold over with this electrode array. The rate of intraoperative tip fold over detection via X-ray imaging was 3.7%. Therefore, we highly recommend X-ray imaging and transimpedance matrix measurements within the surgery protocol. Scala vestibuli insertions happened in patients with cochleostomy only. We could identify two specific points of dislocation depending on electrode array design.
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Ketterer MC, Brückerhoff K, Arndt S, Beck R, Aschendorff A. [Insertion of a second electrode array-a rare complication of CI reimplantation. German version]. HNO 2024; 72:113-117. [PMID: 37845537 PMCID: PMC10827957 DOI: 10.1007/s00106-023-01363-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/07/2023] [Indexed: 10/18/2023]
Abstract
Due to a technical defect or a medical indication, it may be necessary to explant a cochlear implant. This case report shows that there is the risk of encountering a nonremovable electrode array-as described here from the scala tympani-during cochlear reimplantation. In the present case, insertion of a second electrode array into the free and nonobstructed scala vestibuli was successful. Nonetheless, the indication for reimplantation must be carefully considered, especially in patients with tolerable limitations with little or no loss of speech understanding. Furthermore, surgery should not be performed solely because an implant upgrade is desired.
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Ketterer MC, Brückerhoff K, Arndt S, Beck R, Aschendorff A. Insertion of a second electrode array-a rare complication of CI reimplantation. HNO 2024; 72:63-65. [PMID: 37943372 PMCID: PMC10798908 DOI: 10.1007/s00106-023-01364-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/07/2023] [Indexed: 11/10/2023]
Abstract
Due to a technical defect or a medical indication, it may be necessary to explant a cochlear implant. This case report shows that there is the risk of encountering a nonremovable electrode array-as described here from the scala tympani-during cochlear reimplantation. In the present case, insertion of a second electrode array into the free and nonobstructed scala vestibuli was successful. Nonetheless, the indication for reimplantation must be carefully considered, especially in patients with tolerable limitations with little or no loss of speech understanding. Furthermore, surgery should not be performed solely because an implant upgrade is desired.
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Jermann N, Krusche B, Metag V, Afzal F, Badea M, Beck R, Bielefeldt P, Bieling J, Biroth M, Blanke E, Borisov N, Bornstein M, Brinkmann KT, Ciupka S, Crede V, Dolzhikov A, Drexler P, Dutz H, Elsner D, Fedorov A, Frommberger F, Gardner S, Ghosal D, Goertz S, Gorodnov I, Grüner M, Hammann C, Hartmann J, Hillert W, Hoffmeister P, Honisch C, Jude TC, Kalischewski F, Ketzer B, Klassen P, Klein F, Klempt E, Knaust J, Kolanus N, Kreit J, Krönert P, Lang M, Lazarev AB, Livingston K, Lutterer S, Mahlberg P, Meier C, Meyer W, Mitlasoczki B, Müllers J, Nanova M, Neganov A, Nikonov K, Noël JF, Ostrick M, Ottnad J, Otto B, Penman G, Poller T, Proft D, Reicherz G, Reinartz N, Richter L, Runkel S, Salisbury B, Sarantsev AV, Schaab D, Schmidt C, Schmieden H, Schultes J, Seifen T, Spieker K, Stausberg N, Steinacher M, Taubert F, Thiel A, Thoma U, Thomas A, Urban M, Urff G, Usov Y, van Pee H, Wang YC, Wendel C, Wiedner U, Wunderlich Y. Measurement of polarization observables T, P, and H in π0 and η photoproduction off quasi-free nucleons. THE EUROPEAN PHYSICAL JOURNAL. A, HADRONS AND NUCLEI 2023; 59:232. [PMID: 37860634 PMCID: PMC10582157 DOI: 10.1140/epja/s10050-023-01134-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 09/21/2023] [Indexed: 10/21/2023]
Abstract
The target asymmetry T, recoil asymmetry P, and beam-target double polarization observable H were determined in exclusive π 0 and η photoproduction off quasi-free protons and, for the first time, off quasi-free neutrons. The experiment was performed at the electron stretcher accelerator ELSA in Bonn, Germany, with the Crystal Barrel/TAPS detector setup, using a linearly polarized photon beam and a transversely polarized deuterated butanol target. Effects from the Fermi motion of the nucleons within deuterium were removed by a full kinematic reconstruction of the final state invariant mass. A comparison of the data obtained on the proton and on the neutron provides new insight into the isospin structure of the electromagnetic excitation of the nucleon. Earlier measurements of polarization observables in the γ p → π 0 p and γ p → η p reactions are confirmed. The data obtained on the neutron are of particular relevance for clarifying the origin of the narrow structure in the η n system at W = 1.68 GeV . A comparison with recent partial wave analyses favors the interpretation of this structure as arising from interference of the S 11 ( 1535 ) and S 11 ( 1650 ) resonances within the S 11 -partial wave.
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Nguyen T, Bian X, Roberson D, Khanna R, Chen Q, Yan C, Beck R, Worman Z, Meerzaman D. Multi-omics Pathways Workflow (MOPAW): An Automated Multi-omics Workflow on the Cancer Genomics Cloud. Cancer Inform 2023; 22:11769351231180992. [PMID: 37342652 PMCID: PMC10278438 DOI: 10.1177/11769351231180992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 05/22/2023] [Indexed: 06/23/2023] Open
Abstract
Introduction In the era of big data, gene-set pathway analyses derived from multi-omics are exceptionally powerful. When preparing and analyzing high-dimensional multi-omics data, the installation process and programing skills required to use existing tools can be challenging. This is especially the case for those who are not familiar with coding. In addition, implementation with high performance computing solutions is required to run these tools efficiently. Methods We introduce an automatic multi-omics pathway workflow, a point and click graphical user interface to Multivariate Single Sample Gene Set Analysis (MOGSA), hosted on the Cancer Genomics Cloud by Seven Bridges Genomics. This workflow leverages the combination of different tools to perform data preparation for each given data types, dimensionality reduction, and MOGSA pathway analysis. The Omics data includes copy number alteration, transcriptomics data, proteomics and phosphoproteomics data. We have also provided an additional workflow to help with downloading data from The Cancer Genome Atlas and Clinical Proteomic Tumor Analysis Consortium and preprocessing these data to be used for this multi-omics pathway workflow. Results The main outputs of this workflow are the distinct pathways for subgroups of interest provided by users, which are displayed in heatmaps if identified. In addition to this, graphs and tables are provided to users for reviewing. Conclusion Multi-omics Pathway Workflow requires no coding experience. Users can bring their own data or download and preprocess public datasets from The Cancer Genome Atlas and Clinical Proteomic Tumor Analysis Consortium using our additional workflow based on the samples of interest. Distinct overactivated or deactivated pathways for groups of interest can be found. This useful information is important in effective therapeutic targeting.
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Vukojicic N, Danicic A, Worman Z, Beck R, Veljkovic D, Matic M, DiGiovanna J, Davis-Dusenbery B. Abstract 2075: Highly customizable multi-sample single cell RNA-Seq pipeline on the CGC. Cancer Res 2023. [DOI: 10.1158/1538-7445.am2023-2075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
Abstract
Abstract
Single-cell (sc) transcriptomics has revolutionized our understanding of the biological characteristics and dynamics of cancer development. It can help us identify rare cell subpopulations and understand mechanisms associated with tumor genesis, progression, and response to therapy. The most important step in the analyses of any scRNA-seq dataset is subpopulation identification, usually performed via unsupervised clustering, followed by gene marker identification. We created a highly customizable workflow for sc data analysis, implemented in Common Workflow Language (CWL) on the Cancer Genomics Cloud (CGC) platform. The NCI-funded CGC platform, powered by Seven Bridges, provides a collaborative cloud base computation infrastructure that collocates computation, over 750 bioinformatics workflows, and 3+ PB data to researchers, making the analysis of large datasets accessible from any environment. The “Multi-Sample Clustering and Gene Marker Identification with Seurat 4.1.0” workflow comprises the following steps: Loading scRNA-seq Expression Datasets, Quality Control and Preprocessing, and Clustering and Identification of Gene Markers. Our solution supports gene-cell count matrices generated by several commonly used quantifiers (for example, Cell Ranger counts, Salmon Alevin, Kallisto BUStools, STAR) from single or multiple sc datasets from different batches, as well as single or multiple single-cell samples combined in a single SingleCellExperiment object. The versatility of the pipeline is obtained using several implemented options in each of the steps. Quality control can be performed manually or automatically using several options for normalization (LogNormalize, Deconvolution, SCnorm and Linnorm) and for batch effect correction (Seurat and Harmony). For clustering, the pipeline uses Seurat's graph-based approach, with options for different clustering resolutions. After performing identification of gene markers for each cluster, a researcher can test differential expression using various packages including wilcox, bimod, roc, and DESeq2. Here, we demonstrate the application of this workflow to a typical sc analysis, by processing an open access dataset of 61k cells isolated from embryonal mouse pons and forebrain, two major brain tumor locations. We used different clustering resolutions to achieve different degrees of granularity and identified cluster-specific marker genes used to identify vulnerable cell populations. To enable researchers to use this analysis as a guideline, we made this analysis available as a public project. Further development of single-cell sequencing techniques will undoubtedly improve our understanding of tumor biology and highlight promising drug targets. CGC’s cloud base computation infrastructure, along with numerous available cancer datasets and easy-to-use single-cell data processing workflows, among others, will be instrumental in this process.
Citation Format: Nevena Vukojicic, Aleksandar Danicic, Zelia Worman, Rowan Beck, Dalibor Veljkovic, Marko Matic, Jack DiGiovanna, Brandi Davis-Dusenbery. Highly customizable multi-sample single cell RNA-Seq pipeline on the CGC [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 2075.
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Todero JE, Koch-Laskowski K, Shi Q, Kanke M, Hung YH, Beck R, Styblo M, Sethupathy P. Candidate master microRNA regulator of arsenic-induced pancreatic beta cell impairment revealed by multi-omics analysis. Arch Toxicol 2022; 96:1685-1699. [PMID: 35314868 PMCID: PMC9095563 DOI: 10.1007/s00204-022-03263-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Accepted: 02/17/2022] [Indexed: 02/05/2023]
Abstract
Arsenic is a pervasive environmental toxin that is listed as the top priority for investigation by the Agency for Toxic Substance and Disease Registry. While chronic exposure to arsenic is associated with type 2 diabetes (T2D), the underlying mechanisms are largely unknown. We have recently demonstrated that arsenic treatment of INS-1 832/13 pancreatic beta cells impairs glucose-stimulated insulin secretion (GSIS), a T2D hallmark. We have also shown that arsenic alters the microRNA profile of beta cells. MicroRNAs have a well-established post-transcriptional regulatory role in both normal beta cell function and T2D pathogenesis. We hypothesized that there are microRNA master regulators that shape beta cell gene expression in pathways pertinent to GSIS after exposure to arsenicals. To test this hypothesis, we first treated INS-1 832/13 beta cells with either inorganic arsenic (iAsIII) or monomethylarsenite (MAsIII) and confirmed GSIS impairment. We then performed multi-omic analysis using chromatin run-on sequencing, RNA-sequencing, and small RNA-sequencing to define profiles of transcription, gene expression, and microRNAs, respectively. Integrating across these data sets, we first showed that genes downregulated by iAsIII treatment are enriched in insulin secretion and T2D pathways, whereas genes downregulated by MAsIII treatment are enriched in cell cycle and critical beta cell maintenance factors. We also defined the genes that are subject primarily to post-transcriptional control in response to arsenicals and demonstrated that miR-29a is the top candidate master regulator of these genes. Our results highlight the importance of microRNAs in arsenical-induced beta cell dysfunction and reveal both shared and unique mechanisms between iAsIII and MAsIII.
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Mornacchi E, Martel PP, Abt S, Achenbach P, Adlarson P, Afzal F, Ahmed Z, Annand JRM, Arends HJ, Bashkanov M, Beck R, Biroth M, Borisov N, Braghieri A, Briscoe WJ, Cividini F, Collicott C, Costanza S, Denig A, Dolzhikov AS, Downie EJ, Drexler P, Fegan S, Gardner S, Ghosal D, Glazier DI, Gorodnov I, Gradl W, Günther M, Gurevich D, Heijkenskjöld L, Hornidge D, Huber GM, Käser A, Kashevarov VL, Kay SJD, Korolija M, Krusche B, Lazarev A, Livingston K, Lutterer S, MacGregor IJD, Manley DM, Miskimen R, Mocanu M, Mullen C, Neganov A, Neiser A, Ostrick M, Paudyal D, Pedroni P, Powell A, Rostomyan T, Sokhoyan V, Spieker K, Steffen O, Strakovsky I, Strub T, Thiel M, Thomas A, Usov YA, Wagner S, Watts DP, Werthmüller D, Wettig J, Wolfes M, Zachariou N. Measurement of Compton Scattering at MAMI for the Extraction of the Electric and Magnetic Polarizabilities of the Proton. PHYSICAL REVIEW LETTERS 2022; 128:132503. [PMID: 35426697 DOI: 10.1103/physrevlett.128.132503] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 01/31/2022] [Accepted: 02/25/2022] [Indexed: 06/14/2023]
Abstract
A precise measurement of the differential cross sections dσ/dΩ and the linearly polarized photon beam asymmetry Σ_{3} for Compton scattering on the proton below pion threshold has been performed with a tagged photon beam and almost 4π detector at the Mainz Microtron. The incident photons were produced by the recently upgraded Glasgow-Mainz photon tagging facility and impinged on a cryogenic liquid hydrogen target, with the scattered photons detected in the Crystal Ball/TAPS setup. Using the highest statistics Compton scattering data ever measured on the proton along with two effective field theories (both covariant baryon and heavy-baryon) and one fixed-t dispersion relation model, constraining the fits with the Baldin sum rule, we have obtained the proton electric and magnetic polarizabilities with unprecedented precision: α_{E1}=10.99±0.16±0.47±0.17±0.34, β_{M1}=3.14±0.21±0.24±0.20±0.35; in units of 10^{-4} fm^{3} where the errors are statistical, systematic, spin polarizability dependent, and model dependent.
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Arulsamyn R, Beck R, Jochem C. Krankheitsspektrum und Inanspruchnahme von medizinischen Leistungen bei Geflüchteten im Ankerzentrum Regensburg im Jahr 2018. DAS GESUNDHEITSWESEN 2021. [DOI: 10.1055/s-0041-1732036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Alexeev GD, Alexeev MG, Amoroso A, Andrieux V, Anosov V, Antoshkin A, Augsten K, Augustyniak W, Azevedo CDR, Badełek B, Balestra F, Ball M, Barth J, Beck R, Bedfer Y, Berenguer Antequera J, Bernhard J, Bodlak M, Bradamante F, Bressan A, Burtsev VE, Chang WC, Chatterjee C, Chiosso M, Chumakov AG, Chung SU, Cicuttin A, Correia PMM, Crespo ML, D'Ago D, Dalla Torre S, Dasgupta SS, Dasgupta S, Denisenko I, Denisov OY, Donskov SV, Doshita N, Dreisbach C, Dünnweber W, Dusaev RR, Efremov A, Eversheim PD, Faccioli P, Faessler M, Finger M, Finger M, Fischer H, Franco C, Friedrich JM, Frolov V, Gautheron F, Gavrichtchouk OP, Gerassimov S, Giarra J, Gnesi I, Gorzellik M, Grasso A, Gridin A, Grosse Perdekamp M, Grube B, Guskov A, von Harrach D, Heitz R, Herrmann F, Horikawa N, d'Hose N, Hsieh CY, Huber S, Ishimoto S, Ivanov A, Iwata T, Jandek M, Jary V, Joosten R, Jörg P, Kabuß E, Kaspar F, Kerbizi A, Ketzer B, Khaustov GV, Khokhlov YA, Kisselev Y, Klein F, Koivuniemi JH, Kolosov VN, Kondo Horikawa K, Konorov I, Konstantinov VF, Kotzinian AM, Kouznetsov OM, Koval A, Kral Z, Krinner F, Kulinich Y, Kunne F, Kurek K, Kurjata RP, Kveton A, Lavickova K, Levorato S, Lian YS, Lichtenstadt J, Lin PJ, Longo R, Lyubovitskij VE, Maggiora A, Magnon A, Makins N, Makke N, Mallot GK, Maltsev A, Mamon SA, Marianski B, Martin A, Marzec J, Matoušek J, Matsuda T, Mattson G, Meshcheryakov GV, Meyer M, Meyer W, Mikhailov YV, Mikhasenko M, Mitrofanov E, Mitrofanov N, Miyachi Y, Moretti A, Nagaytsev A, Naim C, Neyret D, Nový J, Nowak WD, Nukazuka G, Nunes AS, Olshevsky AG, Ostrick M, Panzieri D, Parsamyan B, Paul S, Pekeler H, Peng JC, Pešek M, Peshekhonov DV, Pešková M, Pierre N, Platchkov S, Pochodzalla J, Polyakov VA, Pretz J, Quaresma M, Quintans C, Reicherz G, Riedl C, Rudnicki T, Ryabchikov DI, Rybnikov A, Rychter A, Samoylenko VD, Sandacz A, Sarkar S, Savin IA, Sbrizzai G, Schmieden H, Selyunin A, Sinha L, Slunecka M, Smolik J, Srnka A, Steffen D, Stolarski M, Subrt O, Sulc M, Suzuki H, Sznajder P, Tessaro S, Tessarotto F, Thiel A, Tomsa J, Tosello F, Townsend A, Tskhay V, Uhl S, Vasilishin BI, Vauth A, Veit BM, Veloso J, Ventura B, Vidon A, Virius M, Wagner M, Wallner S, Zaremba K, Zavada P, Zavertyaev M, Zemko M, Zemlyanichkina E, Zhao Y, Ziembicki M. Triangle Singularity as the Origin of the a_{1}(1420). PHYSICAL REVIEW LETTERS 2021; 127:082501. [PMID: 34477443 DOI: 10.1103/physrevlett.127.082501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 05/04/2021] [Accepted: 05/26/2021] [Indexed: 06/13/2023]
Abstract
The COMPASS Collaboration experiment recently discovered a new isovector resonancelike signal with axial-vector quantum numbers, the a_{1}(1420), decaying to f_{0}(980)π. With a mass too close to and a width smaller than the axial-vector ground state a_{1}(1260), it was immediately interpreted as a new light exotic meson, similar to the X, Y, Z states in the hidden-charm sector. We show that a resonancelike signal fully matching the experimental data is produced by the decay of the a_{1}(1260) resonance into K^{*}(→Kπ)K[over ¯] and subsequent rescattering through a triangle singularity into the coupled f_{0}(980)π channel. The amplitude for this process is calculated using a new approach based on dispersion relations. The triangle-singularity model is fitted to the partial-wave data of the COMPASS experiment. Despite having fewer parameters, this fit shows a slightly better quality than the one using a resonance hypothesis and thus eliminates the need for an additional resonance in order to describe the data. We thereby demonstrate for the first time in the light-meson sector that a resonancelike structure in the experimental data can be described by rescattering through a triangle singularity, providing evidence for a genuine three-body effect.
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Mullen C, Gardner S, Glazier DI, Kay SJD, Livingston K, Strakovsky II, Workman RL, Abt S, Achenbach P, Afzal F, Ahmed Z, Akondi CS, Annand JRM, Bashkanov M, Beck R, Biroth M, Borisov NS, Braghieri A, Briscoe WJ, Cividini F, Collicott C, Costanza S, Denig A, Dieterle M, Downie EJ, Drexler P, Fegan S, Ferretti-Bondy MI, Ghosal D, Gorodnov I, Gradl W, Günther M, Gurevic G, Heijkenskjöld L, Hornidge D, Huber GM, Jermann N, Kaeser A, Korolija M, Kashevarov VL, Krusche B, Kulikov VV, Lazarev A, Lutterer S, MacGregor IJD, Manley DM, Martel PP, Martemianov MA, Meier C, Miskimen R, Mocanu M, Mornacchi E, Neganov A, Oberle M, Ostrick M, Otte P, Paudyal D, Pedroni P, Powell A, Prakhov SN, Reicherz G, Ron G, Rostomyan T, Sfienti C, Sokhoyan V, Spieker K, Steffen O, Strub T, Supek I, Thiel A, Thiel M, Thomas A, Unverzagt M, Usov YA, Wagner S, Walford NK, Watts DP, Werthmüller D, Wettig J, Witthauer L, Wolfes M, Zachariou N. Single π 0 production off neutrons bound in deuteron with linearly polarized photons. THE EUROPEAN PHYSICAL JOURNAL. A, HADRONS AND NUCLEI 2021; 57:205. [PMID: 34720708 PMCID: PMC8550430 DOI: 10.1140/epja/s10050-021-00521-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 06/10/2021] [Indexed: 06/13/2023]
Abstract
The quasifree γ → d → π 0 n ( p ) photon beam asymmetry, Σ , has been measured at photon energies, E γ , from 390 to 610 MeV, corresponding to center of mass energy from 1.271 to 1.424 GeV, for the first time. The data were collected in the A2 hall of the MAMI electron beam facility with the Crystal Ball and TAPS calorimeters covering pion center-of-mass angles from 49 ∘ to 148 ∘ . In this kinematic region, polarization observables are sensitive to contributions from the Δ ( 1232 ) and N(1440) resonances. The extracted values of Σ have been compared to predictions based on partial-wave analyses (PWAs) of the existing pion photoproduction database. Our comparison includes the SAID, MAID and Bonn-Gatchina analyses; while a revised SAID fit, including the new Σ measurements, has also been performed. In addition, isospin symmetry is examined as a way to predict π 0 n photoproduction observables, based on fits to published data in the channels π 0 p , π + n and π - p .
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Bernauer JC, Schmidt A, Henderson BS, Ice LD, Khaneft D, O'Connor C, Russell R, Akopov N, Alarcon R, Ates O, Avetisyan A, Beck R, Belostotski S, Bessuille J, Brinker F, Calarco JR, Carassiti V, Cisbani E, Ciullo G, Contalbrigo M, De Leo R, Diefenbach J, Donnelly TW, Dow K, Elbakian G, Eversheim PD, Frullani S, Funke C, Gavrilov G, Gläser B, Görrissen N, Hasell DK, Hauschildt J, Hoffmeister P, Holler Y, Ihloff E, Izotov A, Kaiser R, Karyan G, Kelsey J, Kiselev A, Klassen P, Krivshich A, Kohl M, Lehmann I, Lenisa P, Lenz D, Lumsden S, Ma Y, Maas F, Marukyan H, Miklukho O, Milner RG, Movsisyan A, Murray M, Naryshkin Y, Perez Benito R, Perrino R, Redwine RP, Rodríguez Piñeiro D, Rosner G, Schneekloth U, Seitz B, Statera M, Thiel A, Vardanyan H, Veretennikov D, Vidal C, Winnebeck A, Yeganov V. Measurement of the Charge-Averaged Elastic Lepton-Proton Scattering Cross Section by the OLYMPUS Experiment. PHYSICAL REVIEW LETTERS 2021; 126:162501. [PMID: 33961478 DOI: 10.1103/physrevlett.126.162501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 03/17/2021] [Accepted: 03/23/2021] [Indexed: 06/12/2023]
Abstract
We report the first measurement of the average of the electron-proton and positron-proton elastic scattering cross sections. This lepton charge-averaged cross section is insensitive to the leading effects of hard two-photon exchange, giving more robust access to the proton's electromagnetic form factors. The cross section was extracted from data taken by the OLYMPUS experiment at DESY, in which alternating stored electron and positron beams were scattered from a windowless gaseous hydrogen target. Elastic scattering events were identified from the coincident detection of the scattered lepton and recoil proton in a large-acceptance toroidal spectrometer. The luminosity was determined from the rates of Møller, Bhabha, and elastic scattering in forward electromagnetic calorimeters. The data provide some selectivity between existing form factor global fits and will provide valuable constraints to future fits.
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Aschendorff A, Arndt S, Kröger S, Wesarg T, Ketterer MC, Kirchem P, Pixner S, Hassepaß F, Beck R. Quality of cochlear implant rehabilitation under COVID-19 conditions. HNO 2021; 69:1-6. [PMID: 33034674 PMCID: PMC7545804 DOI: 10.1007/s00106-020-00923-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Background The rehabilitation process following cochlear implant (CI) surgery is carried out in a multimodal therapy according to German national guidelines and includes technical and medical aftercare. In times of the corona pandemic surgery and rehabilitation appointments were cancelled or delayed leading to a more difficult access to auditory rehabilitation. Newly implemented hygiene modalities due to the SARS-CoV‑2 pandemic have changed medical aftercare and the rehabilitation process. The aim of this study was to evaluate the quality of rehabilitation under corona conditions. Material and methods An anonymous survey of adult cochlear implant patients was carried out by a non-standardized questionnaire. Demographics were analyzed and the quality of medical aftercare, speech therapy, technical aftercare, psychological support and the hygiene modalities were compared to previous rehabilitation stays. Results In total 109 patients completed the questionnaire. The quality of rehabilitation and individual therapy were rated as qualitatively similar or improved. The threat of the pandemic and fear of corona were rated unexpectedly high with 68% and 50%, respectively. The hygiene measures during the rehabilitation stay eased subjective fears at the same time. The majority of patients were annoyed by wearing face masks but visors, protection shields and social distancing were more tolerated. Conclusion The implementation of the new hygiene modalities within the therapeutic rehabilitation setting was well-accepted by patients allowing access to auditory rehabilitation. A successful rehabilitation should ensure a fear-free environment by adhering to the necessary hygiene modalities. Electronic supplementary material The online version of this article (10.1007/s00106-020-00923-z) includes the study questionnaire. Article and supplementary material are available at www.springermedizin.de. Please enter the title of the article in the search field, the supplementary material can be found under “Ergänzende Inhalte”. ![]()
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Gottschall M, Afzal F, Anisovich AV, Bayadilov D, Beck R, Bichow M, Brinkmann KT, Crede V, Dieterle M, Dietz F, Dutz H, Eberhardt H, Elsner D, Ewald R, Fornet-Ponse K, Friedrich S, Frommberger F, Gridnev A, Grüner M, Gutz E, Hammann C, Hannappel J, Hartmann J, Hillert W, Hoffmeister P, Honisch C, Jude T, Kammer S, Kalinowsky H, Keshelashvili I, Klassen P, Klein F, Klempt E, Koop K, Krusche B, Kube M, Lang M, Lopatin I, Mahlberg P, Makonyi K, Metag V, Meyer W, Müller J, Müllers J, Nanova M, Nikonov V, Novotny R, Piontek D, Reicherz G, Rostomyan T, Sarantsev A, Schmidt C, Schmieden H, Seifen T, Sokhoyan V, Spieker K, Thiel A, Thoma U, Urban M, Pee HV, Walther D, Wendel C, Werthmüller D, Wiedner U, Wilson A, Winnebeck A, Witthauer L, Wunderlich Y. Measurement of the helicity asymmetry E for the reaction γ p → π 0 p : The CBELSA/TAPS Collaboration. THE EUROPEAN PHYSICAL JOURNAL. A, HADRONS AND NUCLEI 2021; 57:40. [PMID: 33551676 PMCID: PMC7840663 DOI: 10.1140/epja/s10050-020-00334-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Accepted: 11/28/2020] [Indexed: 06/12/2023]
Abstract
A measurement of the double-polarization observable E for the reaction γ p → π 0 p is reported. The data were taken with the CBELSA/TAPS experiment at the ELSA facility in Bonn using the Bonn frozen-spin butanol (C4 H9 OH) target, which provided longitudinally-polarized protons. Circularly-polarized photons were produced via bremsstrahlung of longitudinally-polarized electrons. The data cover the photon energy range fromE γ = 600 to 2310 MeV and nearly the complete angular range. The results are compared to and have been included in recent partial wave analyses.
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Di Trana A, Beck R, Del Rio A. Management of GHB acute intoxications. LA CLINICA TERAPEUTICA 2020; 171:e49-e51. [PMID: 33346326 DOI: 10.7417/ct.2021.2280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Intoxications related to γ-Hydroxybutyric acid (GHB), arising from its success as recreational drug due to its psychotropic properties, are significantly and alarmingly jeopardizing public health, posing major challenges to medical staff. In recent years, GHB's prodrug γ-butyrolactone (GBL) has often supplanted GHB in recreational settings, owing to its lower cost and the ease with which it can be obtained, mainly due to its various legal industrial applications. The Authors intend to stress that symptoms should be assessed and confirmed by timely toxicological analyses by highly-trained, expert professionals. Such tests aimed at analytical confirmation are instrumental in providing physicians valuable indications in terms of the proper pharmacological treatments in order to revert the adverse, or even fatal, side effects, particularly when the overall intoxication picture looks ambiguous. At the time being, little is known about the pharmacological therapies effective in GHB intoxication cases; further comprehensive research is therefore essential, if we are to tackle such a burgeoning public health emergency before it is too late.
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Ketterer MC, Arndt S, Knopf A, Jakob TF, Beck R, Aschendorff A. [Navigated endoscopically controlled transtympanic resection of an infracochlear cholesteatoma recurrence. German version]. HNO 2020; 69:589-592. [PMID: 33346853 DOI: 10.1007/s00106-020-00977-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/19/2020] [Indexed: 11/26/2022]
Abstract
An infracochlear cholesteatoma of the petrous apex with direct contact to the internal carotid artery (ICA) is rare. Due to the risk of cochlear injury with consecutive deafness or injury of the ICA, precise preoperative planning of the approach and strategy is recommended, as well as thorough preoperative counseling of the patient for their informed consent. This case report presents navigated endoscopically controlled transtympanic resection of such a cholesteatoma recurrence. Hearing capacity was not impaired and the patient shows no signs of recurrence.
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Aschendorff A, Arndt S, Kröger S, Wesarg T, Ketterer MC, Kirchem P, Pixner S, Hassepaß F, Beck R. [Quality of cochlear implant rehabilitation under COVID-19 conditions. German version]. HNO 2020; 68:847-853. [PMID: 32876719 PMCID: PMC7466923 DOI: 10.1007/s00106-020-00922-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Hintergrund Die Rehabilitation nach CI(Cochleaimplantat)-Operation erfolgt leitliniengerecht durch eine multimodale Therapie, technische Anpassungen des Sprachprozessors und medizinische Nachsorge. Zu Zeiten der Corona-Pandemie wurde für die Patienten der Zugang zur auditorischen Rehabilitation verzögert oder erschwert. Die neuen Hygienemaßnahmen durch die SARS-Cov-2-Pandemie verändern auch die medizinische Nachsorge und Rehabilitation nach CI. Ziel der Untersuchung war es, die Qualität der Rehabilitation unter Corona-Bedingungen zu evaluieren. Material und Methoden Wir führten eine anonyme Befragung erwachsener Rehabilitanden mittels nichtstandardisiertem Fragebogen durch. Beurteilt wurden im Vergleich zu den Voraufenthalten die Qualität der ärztlichen Betreuung, der Sprach- und Musiktherapie, der technischen Anpassung und der psychologischen Betreuung sowie der Einsatz der Hygienemaßnahmen. Ergebnisse Insgesamt 109 Rehabilitanden beantworteten den Fragebogen. Die Qualität der Rehabilitation und der Therapien wurde als qualitativ unverändert oder besser eingeschätzt. Die Gefährlichkeit der Pandemie, aber auch die Angst in der derzeitigen Situation gaben die Rehabilitanden zu einem unerwartet hohen Prozentsatz mit 68 bzw. 50 % an. Gleichzeitig konnten die getroffenen Hygienemaßnahmen die Patienten subjektiv während des Aufenthalts entlasten. Der Mund-Nasen-Schutz war für die Mehrheit sehr störend, Visiere, Spuckschutz bzw. Abstandsgebot wurden eher toleriert. Schlussfolgerungen Die Umsetzung der Hygienemaßnahmen im therapeutischen Setting der CI-Rehabilitation wird von den Rehabilitanden akzeptiert und erlaubt den Zugang zur auditorischen Rehabilitation. Ziel einer erfolgreichen CI-Rehabilitation sollte eine möglichst angstfreie Behandlung unter Wahrung der Hygieneregeln sein. Zusatzmaterial online Die Online-Version dieses Beitrags (10.1007/s00106-020-00922-0) enthält den Studienfragebogen. Beitrag und Zusatzmaterial stehen Ihnen auf www.springermedizin.de zur Verfügung. Bitte geben Sie dort den Beitragstitel in die Suche ein, das Zusatzmaterial finden Sie beim Beitrag unter „Ergänzende Inhalte“. ![]()
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Afzal F, Wunderlich Y, Anisovich AV, Bayadilov D, Beck R, Becker M, Blanke E, Brinkmann KT, Ciupka S, Crede V, Dieterle M, Dutz H, Elsner D, Friedrich S, Frommberger F, Gridnev A, Gottschall M, Grüner M, Gutz E, Hammann C, Hannappel J, Hartmann J, Hillert W, Hoff J, Hoffmeister P, Honisch C, Jude T, Kalinowsky H, Kalischewski F, Keshelashvili I, Klassen P, Klein F, Klempt E, Koop K, Kroenert P, Krusche B, Lang M, Lopatin I, Mahlberg P, Meißner UG, Messi F, Metag V, Meyer W, Mitlasóczki B, Müller J, Müllers J, Nanova M, Nikonov K, Nikonov V, Novinskiy V, Novotny R, Piontek D, Reicherz G, Richter L, Rönchen D, Rostomyan T, Salisbury B, Sarantsev A, Schaab D, Schmidt C, Schmieden H, Schultes J, Seifen T, Sokhoyan V, Sowa C, Spieker K, Stausberg N, Thiel A, Thoma U, Triffterer T, Urban M, Urff G, van Pee H, Walther D, Wendel C, Wiedner U, Wilson A, Winnebeck A, Witthauer L. Observation of the pη^{'} Cusp in the New Precise Beam Asymmetry Σ Data for γp→pη. PHYSICAL REVIEW LETTERS 2020; 125:152002. [PMID: 33095637 DOI: 10.1103/physrevlett.125.152002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 07/24/2020] [Accepted: 08/28/2020] [Indexed: 06/11/2023]
Abstract
Data on the beam asymmetry Σ in the photoproduction of η mesons off protons are reported for tagged photon energies from 1130 to 1790 MeV (mass range from W=1748 MeV to W=2045 MeV). The data cover the full solid angle that allows for a precise moment analysis. For the first time, a strong cusp effect in a polarization observable has been observed that is an effect of a branch-point singularity at the pη^{'} threshold [E_{γ}=1447 MeV (W=1896 MeV)]. The latest BnGa partial wave analysis includes the new beam asymmetry data and yields a strong indication for the N(1895)1/2^{-} nucleon resonance, demonstrating the importance of including all singularities for a correct determination of partial waves and resonance parameters.
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Beck R, Malvasi A, Kuczkowski KM, Marinelli E, Zaami S. Intrapartum sonography of fetal head in second stage of labor with neuraxial analgesia: a literature review and possible medicolegal aftermath. EUROPEAN REVIEW FOR MEDICAL AND PHARMACOLOGICAL SCIENCES 2020; 23:3159-3166. [PMID: 31081066 DOI: 10.26355/eurrev_201904_17673] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Intrapartum ultrasound (IU) is a valid support to obstetric management of fetal head progression in the second stage of labor in nulliparous with neuraxial labor analgesia (NLA). Nulliparous with NLA may have a prolonged the second stage of labor. The aim of this literature review was to evaluate the mode of delivery, as well as maternal and fetal morbidities associated with missed progression of fetal head detected with IU in the second stage of labor in nulliparous women with NLA. MATERIALS AND METHODS The literature review was performed using PubMed, Cochrane, Medline, EMBASE, Scopus, Google Scholar and book chapters searches to identify relevant articles from 2001 to 2019, evaluating the mode of delivery and morbidities of the second stage of labor. Search terms used were "Intrapartum ultrasound", "dystocia", "prolonged labor", "neuraxial analgesia", "persistent occiput posterior position", "asynclitism", "second stage of labor", "medico-legal aftermath". Prolonged second stage was defined as three hours and more. Retrospective case series of women with prolonged second stage of labor with NLA were identified. The primary outcome was the incidence of operative vaginal delivery (OVD) and cesarean delivery (CS). RESULTS The use of NLA may determine a prolonged second stage of labor (PSSL). IU when compared to the traditional vaginal digital examination (VDE) demonstrated the highest degree of diagnostic accuracy. CONCLUSIONS The use of IU during NLA can aid in the diagnosis of fetal head progression, station or malposition and malrotation, alerts obstetrician on the possibility of dystocic labor, indicating to stop the drug administration in NLA and shift to OVD or CS. Extending the second stage of labor beyond current American College of Obstetricians and Gynecologists (ACOG) recommendations is beneficial. The ISUOG guidelines recommended the clinical application of IU to diagnose the persistent occiput posterior position (POPP) and asynclitism (A) in dystocic labor and produce photographic evidence of the case. Maternal and neonatal complications, medicolegal consequences and litigation can decrease if the IU device is used as good practice.
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