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Mendez AH, Yu C, Smith LB. Controlling the input: How one-year-old infants sustain visual attention. Dev Sci 2024; 27:e13445. [PMID: 37665124 DOI: 10.1111/desc.13445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Revised: 08/01/2023] [Accepted: 08/18/2023] [Indexed: 09/05/2023]
Abstract
Traditionally, the exogenous control of gaze by external saliencies and the endogenous control of gaze by knowledge and context have been viewed as competing systems, with late infancy seen as a period of strengthening top-down control over the vagaries of the input. Here we found that one-year-old infants control sustained attention through head movements that increase the visibility of the attended object. Freely moving one-year-old infants (n = 45) wore head-mounted eye trackers and head motion sensors while exploring sets of toys of the same physical size. The visual size of the objects, a well-documented salience, varied naturally with the infant's moment-to-moment posture and head movements. Sustained attention to an object was characterized by the tight control of head movements that created and then stabilized a visual size advantage for the attended object for sustained attention. The findings show collaboration between exogenous and endogenous attentional systems and suggest new hypotheses about the development of sustained visual attention.
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Gilson AR, McQuaid C. Top-down versus bottom-up: Grazing and upwelling regime alter patterns of primary productivity in a warm-temperate system. Ecology 2023; 104:e4180. [PMID: 37784259 DOI: 10.1002/ecy.4180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 07/21/2023] [Accepted: 08/25/2023] [Indexed: 10/04/2023]
Abstract
Community structure is driven by the interaction of physical processes and biological interactions that can vary across environmental gradients and the strength of top-down control is expected to vary along gradients of primary productivity. In coastal marine systems, upwelling drives regional resource availability through the bottom-up effect of nutrient subsidies. This alters rates of primary production and is expected to alter algae-herbivore interactions in rocky intertidal habitats. Despite the potential for upwelling to alter these interactions, the interaction of upwelling and grazing pressure is poorly understood, particularly for warm-temperate systems. Using in situ herbivore exclusion experiments replicated across multiple upwelling regimes, we investigated the effects of both grazing pressure, upwelling, and their interactions on the sessile invertebrate community and biomass of macroalgal communities in a warm-temperate system. The sessile invertebrate cover showed indirect effects of grazing, being consistently low where algal biomass was high at upwelling sites and at nonupwelling sites when grazers were excluded. The macroalgal cover was greater at upwelling sites when grazers were excluded and there was a strong effect of succession throughout the experimental period. Grazing effects were greater at upwelling sites, particularly during winter months. There was a nonsignificant trend toward greater grazing pressure on early than later successional stages. Our results show that the positive bottom-up effects of nutrient supply on algal production do not overwhelm top-down control in this warm-temperate system but do have knock-on consequences for invertebrates that compete with macroalgae for space. We speculate that global increases in air and sea surface temperatures in warm-temperate systems will promote top-down effects in upwelling regions by increasing herbivore metabolic and growth rates.
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Dubey A, Markowitz DA, Pesaran B. Top-down control of exogenous attentional selection is mediated by beta coherence in prefrontal cortex. Neuron 2023; 111:3321-3334.e5. [PMID: 37499660 PMCID: PMC10935562 DOI: 10.1016/j.neuron.2023.06.025] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 11/30/2022] [Accepted: 06/26/2023] [Indexed: 07/29/2023]
Abstract
Salience-driven exogenous and goal-driven endogenous attentional selection are two distinct forms of attention that guide selection of task-irrelevant and task-relevant targets in primates. Top-down attentional control mechanisms enable selection of the task-relevant target by limiting the influence of sensory information. Although the lateral prefrontal cortex (LPFC) is known to mediate top-down control, the neuronal mechanisms of top-down control of attentional selection are poorly understood. Here, we trained two rhesus monkeys on a two-target, free-choice luminance-reward selection task. We demonstrate that visual-movement (VM) neurons and nonvisual neurons or movement neurons encode exogenous and endogenous selection. We then show that coherent beta activity selectively modulates mechanisms of exogenous selection specifically during conflict and consequently may support top-down control. These results reveal the VM-neuron-specific network mechanisms of attentional selection and suggest a functional role for beta-frequency coherent neural dynamics in the modulation of sensory communication channels for the top-down control of attentional selection.
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4
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Lagasse E, Levin M. Future medicine: from molecular pathways to the collective intelligence of the body. Trends Mol Med 2023; 29:687-710. [PMID: 37481382 PMCID: PMC10527237 DOI: 10.1016/j.molmed.2023.06.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 06/20/2023] [Accepted: 06/22/2023] [Indexed: 07/24/2023]
Abstract
The remarkable anatomical homeostasis exhibited by complex living organisms suggests that they are inherently reprogrammable information-processing systems that offer numerous interfaces to their physiological and anatomical problem-solving capacities. We briefly review data suggesting that the multiscale competency of living forms affords a new path for biomedicine that exploits the innate collective intelligence of tissues and organs. The concept of tissue-level allostatic goal-directedness is already bearing fruit in clinical practice. We sketch a roadmap towards 'somatic psychiatry' by using advances in bioelectricity and behavioral neuroscience to design methods that induce self-repair of structure and function. Relaxing the assumption that cellular control mechanisms are static, exploiting powerful concepts from cybernetics, behavioral science, and developmental biology may spark definitive solutions to current biomedical challenges.
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Stenson AR, Whitney P, Hinson JM, Hansen DA, Lawrence-Sidebottom D, Skeiky L, Riedy SM, Kurinec CA, Van Dongen HPA. Effects of total sleep deprivation on components of top-down attentional control using a flexible attentional control task. J Sleep Res 2023; 32:e13744. [PMID: 36205178 DOI: 10.1111/jsr.13744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 07/28/2022] [Accepted: 09/19/2022] [Indexed: 11/30/2022]
Abstract
Sleep deprivation consistently decreases vigilant attention, which can lead to difficulty in performing a variety of cognitive tasks. However, sleep-deprived individuals may be able to compensate for degraded vigilant attention by means of top-down attentional control. We employed a novel task to measure the degree to which individuals overcome impairments in vigilant attention by using top-down attentional control, the Flexible Attentional Control Task (FACT). The FACT is a two-choice task that has trials with valid, invalid, and neutral cues, along with an unexpected switch in the probability of cue validity about halfway in the task. The task provides indices that isolate performance components reflecting vigilant attention and top-down attentional control. Twelve healthy young adults completed an in-laboratory study. After a baseline day, the subjects underwent 39 hours of total sleep deprivation (TSD), followed by a recovery day. The FACT was administered at 03:00, 11:00, and 19:00 during sleep deprivation (TSD condition) and at 11:00 and 19:00 after baseline sleep and at 11:00 after recovery sleep (rested condition). When rested, the subjects demonstrated both facilitation and interference effects on cued trials. While sleep deprived, the subjects showed vigilant attention deficits on neutral cue trials, and an impaired ability to reduce these deficits by using predictive contextual cues. Our results indicate that the FACT can dissociate vigilant attention from top-down attentional control. Furthermore, they show that during sleep deprivation, contextual cues help individuals to compensate partially for impairments in vigilant attention, but the effectiveness of top-down attentional control is diminished.
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6
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Frith CD. EXPRESS: Consciousness, (meta)Cognition, and Culture. Q J Exp Psychol (Hove) 2023:17470218231164502. [PMID: 36880665 DOI: 10.1177/17470218231164502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
Abstract
Our conscious experience is determined by a combination of top-down processes (e.g., prior beliefs) and bottom-up processes (e.g., sensations). The balance between these two processes depends on estimates of their reliability (precision), so that the estimate considered more reliable is given more weight. We can modify these estimates at the metacognitive level, changing the relative weights of priors and sensations. This enables us, for example, to direct our attention to weak stimuli. But there is cost to this malleability. For example, excessive weighting of top-down processes, as in schizophrenia, can lead to perceiving things that are not there and believing things that are not true.It is only at the top of the brain's cognitive hierarchy that metacognitive control becomes conscious. At this level, our beliefs concern complex, abstract entities with which we have limited direct experience. Estimates of the precision of such beliefs are more uncertain and more malleable. However, at this level we don't need to rely on our own limited experience. We can rely instead on the experiences of others. Explicit metacognition plays a unique role, enabling us to share our experiences. We acquire our beliefs about the world from our immediate social group and from our wider culture. And the same sources provide us with better estimates of the precision of these beliefs. Our confidence in our high-level beliefs is heavily influenced by culture at the expense of direct experience.
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Kempel A, Allan E, Gossner MM, Jochum M, Grace JB, Wardle DA. From bottom-up to top-down control of invertebrate herbivores in a retrogressive chronosequence. Ecol Lett 2023; 26:411-424. [PMID: 36688259 DOI: 10.1111/ele.14161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 12/15/2022] [Accepted: 12/16/2022] [Indexed: 01/24/2023]
Abstract
In the long-term absence of disturbance, ecosystems often enter a decline or retrogressive phase which leads to reductions in primary productivity, plant biomass, nutrient cycling and foliar quality. However, the consequences of ecosystem retrogression for higher trophic levels such as herbivores and predators, are less clear. Using a post-fire forested island-chronosequence across which retrogression occurs, we provide evidence that nutrient availability strongly controls invertebrate herbivore biomass when predators are few, but that there is a switch from bottom-up to top-down control when predators are common. This trophic flip in herbivore control probably arises because invertebrate predators respond to alternative energy channels from the adjacent aquatic matrix, which were independent of terrestrial plant biomass. Our results suggest that effects of nutrient limitation resulting from ecosystem retrogression on trophic cascades are modified by nutrient-independent variation in predator abundance, and this calls for a more holistic approach to trophic ecology to better understand herbivore effects on plant communities.
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Dubey A, Markowitz DA, Pesaran B. Top-down control of exogenous attentional selection is mediated by beta coherence in prefrontal cortex. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.01.11.523664. [PMID: 36711697 PMCID: PMC9882082 DOI: 10.1101/2023.01.11.523664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Salience-driven exogenous and goal-driven endogenous attentional selection are two distinct forms of attention that guide selection of task-irrelevant and task-relevant targets in primates. During conflict i.e, when salience and goal each favor the selection of different targets, endogenous selection of the task-relevant target relies on top-down control. Top-down attentional control mechanisms enable selection of the task-relevant target by limiting the influence of sensory information. Although the lateral prefrontal cortex (LPFC) is known to mediate top-down control, the neuronal mechanisms of top-down control of attentional selection are poorly understood. Here, using a two-target free-choice luminance-reward selection task, we demonstrate that visual-movement neurons and not visual neurons or movement neurons encode exogenous and endogenous selection. We then show that coherent-beta activity selectively modulates mechanisms of exogenous selection specifically during conflict and consequently may support top-down control. These results reveal the VM-neuron-specific network mechanisms of attentional selection and suggest a functional role for beta-frequency coherent neural dynamics in the modulation of sensory communication channels for the top-down control of attentional selection.
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9
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Frith CD, Frith U. The mystery of the brain-culture interface. Trends Cogn Sci 2022; 26:1023-1025. [PMID: 36180362 DOI: 10.1016/j.tics.2022.08.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/24/2022] [Indexed: 01/12/2023]
Abstract
Nature and culture work together to shape who we are. We are embedded in culture and are profoundly influenced by what those around us say and do. The interface between minds occurs at the level of explicit metacognition, which is at the top of our brain's control hierarchy. But how do our brains do this?
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Neidel V, Sint D, Wallinger C, Traugott M. RNA allows identifying the consumption of carrion prey. Mol Ecol Resour 2022; 22:2662-2671. [PMID: 35668675 PMCID: PMC9541938 DOI: 10.1111/1755-0998.13659] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 05/05/2022] [Accepted: 05/17/2022] [Indexed: 11/30/2022]
Abstract
Facultative scavenging by predatory carnivores is a prevalent but frequently underestimated feeding strategy. DNA‐based methods for diet analysis, however, do not allow to distinguish between scavenging and predation, thus, the significance of scavenging on population dynamics and resource partitioning is widely unknown. Here, we present a methodological innovation to differentiate between scavenging and fresh prey consumption using prey RNA as a target molecule. We hypothesized that the rapid post‐mortem breakdown of RNA in prey tissue should lead to a significantly lower detection probability of prey RNA than DNA when carrion rather than fresh prey is consumed. To test this hypothesis, ground beetles (Pseudoophonus rufipes [De Geer]) were offered either fresh or 1‐day‐old dead Drosophila melanogaster fruit flies (carrion). The detectability of prey RNA and DNA in the beetles' regurgitates was assessed with diagnostic Drosophila‐specific RT‐PCR and PCR assays at 0, 6, 12, 24 and 48 h post‐feeding. After fresh fly consumption, prey RNA and DNA were detectable equally well at all times. When carrion prey was consumed, the detection strength of prey RNA immediately after feeding was significantly lower than that of prey DNA and reached zero in most samples within 6 h of digestion. Our findings provide evidence that prey RNA allows distinguishing between the consumption of fresh and scavenged prey, thereby overcoming a long‐known weakness of molecular diet analysis. The assessment of prey RNA offers a generally applicable approach for examining the importance of scavenging in food webs to unravel its functional consequences for populations, communities, and ecosystems.
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Malik R, Li Y, Schamiloglu S, Sohal VS. Top-down control of hippocampal signal-to-noise by prefrontal long-range inhibition. Cell 2022; 185:1602-1617.e17. [PMID: 35487191 PMCID: PMC10027400 DOI: 10.1016/j.cell.2022.04.001] [Citation(s) in RCA: 41] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 11/15/2021] [Accepted: 03/31/2022] [Indexed: 02/07/2023]
Abstract
Prefrontal cortex (PFC) is postulated to exert "top-down control" on information processing throughout the brain to promote specific behaviors. However, pathways mediating top-down control remain poorly understood. In particular, knowledge about direct prefrontal connections that might facilitate top-down control of hippocampal information processing remains sparse. Here we describe monosynaptic long-range GABAergic projections from PFC to hippocampus. These preferentially inhibit vasoactive intestinal polypeptide-expressing interneurons, which are known to disinhibit hippocampal microcircuits. Indeed, stimulating prefrontal-hippocampal GABAergic projections increases hippocampal feedforward inhibition and reduces hippocampal activity in vivo. The net effect of these actions is to specifically enhance the signal-to-noise ratio for hippocampal encoding of object locations and augment object-induced increases in spatial information. Correspondingly, activating or inhibiting these projections promotes or suppresses object exploration, respectively. Together, these results elucidate a top-down prefrontal pathway in which long-range GABAergic projections target disinhibitory microcircuits, thereby enhancing signals and network dynamics underlying exploratory behavior.
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Bogdziewicz M, Kuijper D, Zwolak R, Churski M, Jędrzejewska B, Wysocka-Fijorek E, Gazda A, Miścicki S, Podgórski T. Emerging infectious disease triggered a trophic cascade and enhanced recruitment of a masting tree. Proc Biol Sci 2022; 289:20212636. [PMID: 35232238 PMCID: PMC8889186 DOI: 10.1098/rspb.2021.2636] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
There are several mechanisms that allow plants to temporarily escape from top-down control. One of them is trophic cascades triggered by top predators or pathogens. Another is satiation of consumers by mast seeding. These two mechanisms have traditionally been studied in separation. However, their combined action may have a greater effect on plant release than either process alone. In 2015, an outbreak of a disease (African swine fever, ASF) caused a crash in wild boar (Sus scrofa) abundance in Białowieża Primeval Forest. Wild boar are important consumers of acorns and are difficult to satiate relative to less mobile granivores. We hypothesized that the joint action of the ASF outbreak and masting would enhance regeneration of oaks (Quercus robur). Data from ungulate exclosures demonstrated that ASF led to reduction in acorn predation. Tree seedling data indicated that oak recruitment increased twofold relative to pre-epidemic period. Our results showed that perturbations caused by wildlife disease travel through food webs and influence forest dynamics. The outbreak of ASF acted synergistically with masting and removed herbivore top-down control of oaks by mobile consumers. This illustrates that the ASF epidemic that currently occurs across Europe can have broad effects on forest dynamics.
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Otsuka S, Nakagawa S, Furukawa S. Expectations of the timing and intensity of a stimulus propagate to the auditory periphery through the medial olivocochlear reflex. Cereb Cortex 2022; 32:5121-5131. [PMID: 35094068 PMCID: PMC9667176 DOI: 10.1093/cercor/bhac002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 12/28/2021] [Accepted: 12/29/2021] [Indexed: 12/27/2022] Open
Abstract
Expectations concerning the timing of a stimulus enhance attention at the time at which the event occurs, which confers significant sensory and behavioral benefits. Herein, we show that temporal expectations modulate even the sensory transduction in the auditory periphery via the descending pathway. We measured the medial olivocochlear reflex (MOCR), a sound-activated efferent feedback that controls outer hair cell motility and optimizes the dynamic range of the sensory system. MOCR was noninvasively assessed using otoacoustic emissions. We found that the MOCR was enhanced by a visual cue presented at a fixed interval before a sound but was unaffected if the interval was changing between trials. The MOCR was also observed to be stronger when the learned timing expectation matched with the timing of the sound but remained unvaried when these two factors did not match. This implies that the MOCR can be voluntarily controlled in a stimulus- and goal-directed manner. Moreover, we found that the MOCR was enhanced by the expectation of a strong but not a weak, sound intensity. This asymmetrical enhancement could facilitate antimasking and noise protective effects without disrupting the detection of faint signals. Therefore, the descending pathway conveys temporal and intensity expectations to modulate auditory processing.
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Xu X, Zhang Y, Li S, Chen H, Liu M, Li B, Nie M. Native herbivores indirectly facilitate the growth of invasive Spartina in a eutrophic saltmarsh. Ecology 2021; 103:e3610. [PMID: 34923622 DOI: 10.1002/ecy.3610] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 09/21/2021] [Accepted: 10/07/2021] [Indexed: 11/07/2022]
Abstract
Current theory (e.g., consumer-controlled theory) predicts that nutrient enrichment typically amplifies herbivory and thereby suppresses the growth and expansion of invasive plants. Herbivores can facilitate plant regrowth in the native community by stimulating complementary growth or ameliorating habitat conditions (e.g., by increasing soil oxygen and nutrient availability), but whether they have similar positive effects on invasive plants, especially under nutrient enrichment, remains unknown. Using a field nitrogen (N)-enrichment X crab exclusion experiment, we evaluated and compared the effects of both N enrichment and crab herbivory on the growth performance of a global invasive cordgrass, Spartina alterniflora, and a co-occurring native plant, Phragmites australis. We found that crabs consistently suppressed P. australis by decreasing density and aboveground biomass regardless of N enrichment. In contrast, for S. alterniflora, the negative effects of crabs under ambient N were replaced by positive effects under N enrichment, with crabs stimulating complementary increases in density and aboveground biomass. The differing effects between the N treatments were driven by crab burrowing activity, which increased soil N availability, and the nutrient-use efficiency of S. alterniflora. Our findings reveal that native herbivores can have opposing effects on native and invasive plants, which broadens our understanding of how exotic plants can achieve dominance in a changing world. This article is protected by copyright. All rights reserved.
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Curveira-Santos G, Gigliotti L, Silva AP, Sutherland C, Foord S, Santos-Reis M, Swanepoel LH. Broad aggressive interactions among African carnivores suggest intraguild killing is driven by more than competition. Ecology 2021; 103:e03600. [PMID: 34816428 DOI: 10.1002/ecy.3600] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 07/01/2021] [Accepted: 09/16/2021] [Indexed: 11/10/2022]
Abstract
Theory on intraguild killing (IGK) is central to mammalian carnivore community ecology and top-down ecosystem regulation. Yet, the cryptic nature of IGK hinders empirical evaluations. Using a novel data source - online photographs of interspecific aggression between African carnivores - we revisited existing predictions about the extent and drivers of IGK. Compared with seminal reviews, our constructed IGK network yielded 10 more species and nearly twice as many interactions. The extent of interactions increased 37% when considering intraguild aggression (direct attack) as a precursor of killing events. We show that IGK occurs over a wider range of body-mass ratios than predicted by standing competition-based views, with highly asymmetrical interactions being pervasive. Evidence that large species, particularly hypercarnivore felids, target sympatric carnivores with a wide range of body sizes suggests that current IGK theory is incomplete, underestimating alternative competition pathways and the role of predatory and incidental killing. Our findings reinforce the potential for IGK-mediated cascades in species-rich assemblages and community-wide suppressive effects of large carnivores.
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Lineage-Specific Growth Curves Document Large Differences in Response of Individual Groups of Marine Bacteria to the Top-Down and Bottom-Up Controls. mSystems 2021; 6:e0093421. [PMID: 34581594 PMCID: PMC8547455 DOI: 10.1128/msystems.00934-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
Marine bacterioplankton represent a diverse assembly of species differing largely in their abundance, physiology, metabolic activity, and role in microbial food webs. To analyze their sensitivity to bottom-up and top-down controls, we performed a manipulation experiment where grazers were removed, with or without the addition of phosphate. Using amplicon-reads normalization by internal standard (ARNIS), we reconstructed growth curves for almost 300 individual phylotypes. Grazer removal caused a rapid growth of most bacterial groups, which grew at rates of 0.6 to 3.5 day−1, with the highest rates (>4 day−1) recorded among Rhodobacteraceae, Oceanospirillales, Alteromonadaceae, and Arcobacteraceae. Based on their growth response, the phylotypes were divided into three basic groups. Most of the phylotypes responded positively to both grazer removal as well as phosphate addition. The second group (containing, e.g., Rhodobacterales and Rhizobiales) responded to the grazer removal but not to the phosphate addition. Finally, some clades, such as SAR11 and Flavobacteriaceae, responded only to phosphate amendment but not to grazer removal. Our results show large differences in bacterial responses to experimental manipulations at the phylotype level and document different life strategies of marine bacterioplankton. In addition, growth curves of 130 phylogroups of aerobic anoxygenic phototrophs were reconstructed based on changes of the functional pufM gene. The use of functional genes together with rRNA genes may significantly expand the scientific potential of the ARNIS technique. IMPORTANCE Growth is one of the main manifestations of life. It is assumed generally that bacterial growth is constrained mostly by nutrient availability (bottom-up control) and grazing (top-down control). Since marine bacteria represent a very diverse assembly of species with different metabolic properties, their growth characteristics also largely differ accordingly. Currently, the growth of marine microorganisms is typically evaluated using microscopy in combination with fluorescence in situ hybridization (FISH). However, these laborious techniques are limited in their throughput and taxonomical resolution. Therefore, we combined a classical manipulation experiment with next-generation sequencing to resolve the growth dynamics of almost 300 bacterial phylogroups in the coastal Adriatic Sea. The analysis documented that most of the phylogroups responded positively to both grazer removal and phosphate addition. We observed significant differences in growth kinetics among closely related species, which could not be distinguished by the classical FISH technique.
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Rakowski CJ, Farrior CE, Manning SR, Leibold MA. Predator complementarity dampens variability of phytoplankton biomass in a diversity-stability trophic cascade. Ecology 2021; 102:e03534. [PMID: 34496044 DOI: 10.1002/ecy.3534] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 06/15/2021] [Accepted: 07/08/2021] [Indexed: 11/11/2022]
Abstract
Trophic cascades - indirect effects of predators that propagate down through food webs - have been extensively documented in many ecosystem types. It has also been shown that predator diversity can mediate these trophic cascades and, separately, that herbivore biomass can influence the stability of primary producers. However, whether predator diversity can cause cascading effects on the stability of lower trophic levels has not yet been studied. We conducted a laboratory microcosm experiment and a field mesocosm experiment manipulating the presence and coexistence of two heteropteran predators and measuring their effects on zooplankton herbivores and phytoplankton basal resources. We predicted that if the predators partitioned their zooplankton prey, for example by size, then the co-presence of the predators would reduce zooplankton prey mass and lead to (1) increased biomass of, and (2) decreased temporal variability of phytoplankton basal resources. We present evidence that the predators partitioned their zooplankton prey, leading to a synergistic suppression of zooplankton. In turn, this enhanced zooplankton suppression led to only a weak, non-significant increase in the central tendency of phytoplankton biomass, but significantly reduced its variability. Our results demonstrate that predator diversity may indirectly stabilize basal resource biomass via a "diversity-stability trophic cascade," seemingly dependent on predator complementarity, even when there is no significant classic trophic cascade altering the central tendency of biomass. Therefore predator diversity, especially if correlated with diversity of prey use, could play a role in regulating ecosystem stability. This link between predator diversity and producer stability has implications for conservation and for potential biological control methods to improve crop yield reliability.
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Landolfi A, Prowe AEF, Pahlow M, Somes CJ, Chien CT, Schartau M, Koeve W, Oschlies A. Can Top-Down Controls Expand the Ecological Niche of Marine N 2 Fixers? Front Microbiol 2021; 12:690200. [PMID: 34489886 PMCID: PMC8416505 DOI: 10.3389/fmicb.2021.690200] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Accepted: 07/05/2021] [Indexed: 01/12/2023] Open
Abstract
The ability of marine diazotrophs to fix dinitrogen gas (N2) is one of the most influential yet enigmatic processes in the ocean. With their activity diazotrophs support biological production by fixing about 100–200 Tg N/year and turning otherwise unavailable dinitrogen into bioavailable nitrogen (N), an essential limiting nutrient. Despite their important role, the factors that control the distribution of diazotrophs and their ability to fix N2 are not fully elucidated. We discuss insights that can be gained from the emerging picture of a wide geographical distribution of marine diazotrophs and provide a critical assessment of environmental (bottom-up) versus trophic (top-down) controls. We expand a simplified theoretical framework to understand how top-down control affects competition for resources that determine ecological niches. Selective mortality, mediated by grazing or viral-lysis, on non-fixing phytoplankton is identified as a critical process that can broaden the ability of diazotrophs to compete for resources in top-down controlled systems and explain an expanded ecological niche for diazotrophs. Our simplified analysis predicts a larger importance of top-down control on competition patterns as resource levels increase. As grazing controls the faster growing phytoplankton, coexistence of the slower growing diazotrophs can be established. However, these predictions require corroboration by experimental and field data, together with the identification of specific traits of organisms and associated trade-offs related to selective top-down control. Elucidation of these factors could greatly improve our predictive capability for patterns and rates of marine N2 fixation. The susceptibility of this key biogeochemical process to future changes may not only be determined by changes in environmental conditions but also via changes in the ecological interactions.
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Perez‐Alvarez R, Grab H, Polyakov A, Poveda K. Landscape composition mediates the relationship between predator body size and pest control. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2021; 31:e02365. [PMID: 33938606 PMCID: PMC8459275 DOI: 10.1002/eap.2365] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Accepted: 02/04/2021] [Indexed: 06/12/2023]
Abstract
Understanding the mechanisms contributing to positive relationships between predator diversity and natural pest control is fundamental to inform more effective management practices to support sustainable crop production. Predator body size can provide important insights to better understand and predict such predator-pest interactions. Yet, most studies exploring the link between predator body size and pest control have been conducted in species-poor communities under controlled environmental conditions, limiting our ability to generalize this relationship across heterogeneous landscapes. Using the community of naturally occurring ground beetles in cabbage fields, we examined how landscape composition (percent cropland) influences the size structure (mean, variance, and skewness of body size distribution) of predator communities and the subsequent effects on pest control. We found that predator communities shifted their size distribution toward larger body sizes in agriculturally dominated landscapes. This pattern arose from increasing numerical dominance of a few large-bodied species rather than an aggregated response across the community. Such landscape-driven changes in community size structure led to concomitant impacts on pest control, as the mean body size of predators was positively related to predation rates. Notably, the magnitude of pest control depended not only on the size of the dominant predators but was also strongly determined by the relative proportion of small vs. large-bodied species (i.e., skewness). Predation rates were higher in predator assemblages with even representation of small and large-bodied species relative to communities dominated by either large or small-bodied predators. Landscape composition may therefore modulate the relationship between predator body size and pest control by influencing the body size distribution of co-occurring species. Our study highlights the need to consider agricultural practices that not only boost effective predators, but also sustain a predator assemblage with a diverse set of traits to maximize overall pest control.
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Yakovis E, Artemieva A. Effects of a trophic cascade on a multi-level facilitation cascade. J Anim Ecol 2021; 90:2462-2470. [PMID: 34143499 DOI: 10.1111/1365-2656.13558] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 06/15/2021] [Indexed: 11/26/2022]
Abstract
The role of cascades in natural communities has been extensively studied, but interactions between trophic and facilitation cascades are unexplored. In the White Sea (65°N) shallow subtidal, bivalve primary facilitators provide hard substrate for secondary facilitator barnacles, that, in turn, provide substrate for conspecifics, ascidians, red algae and multiple associated organisms, composing a multi-level facilitation cascade. Previous research revealed that predation by the whelk Boreotrophon clathratus accounts for ~7% of adult barnacle mortality. Low whelk abundance limits their effect, with barnacles living on conspecifics several times more vulnerable to predation than those living on primary substrate. Trophic cascades can selectively shield foundation species from consumers, and hence may affect the structure and length of facilitation cascades. We tested the hypothesis that low abundance of the whelks results from mesopredator predation on their juveniles. Depending on the magnitude of the effect, this would mean that a trophic cascade controls the abundance of barnacles on all substrates or only barnacles living on conspecifics. We also suggested that barnacles on primary substrates and conspecifics facilitate different dependent assemblages. We manipulated the presence of crab and shrimp mesopredators in field caging experiments to assess their effect on whelk recruitment. In a field survey, we compared the assemblages of sessile macrobenthic organisms associated with barnacles living on different substrates. Caging experiments evidenced that crab and shrimp mesopredators reduce whelk recruitment by 4.6 times. Field data showed that barnacles on primary substrate and on conspecifics promote different dependent assemblages including secondary facilitator ascidians. Although mesopredators do not shield barnacles from elimination, their absence would restrict them from living on conspecifics. Barnacles on conspecifics are functionally different from barnacles on primary substrate, and can be considered a separate level of the facilitation cascade. Trophic cascades thus can generate community-wide effects on facilitation cascades by affecting their structure and possibly length.
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Hungate BA, Marks JC, Power ME, Schwartz E, van Groenigen KJ, Blazewicz SJ, Chuckran P, Dijkstra P, Finley BK, Firestone MK, Foley M, Greenlon A, Hayer M, Hofmockel KS, Koch BJ, Mack MC, Mau RL, Miller SN, Morrissey EM, Propster JR, Purcell AM, Sieradzki E, Starr EP, Stone BWG, Terrer C, Pett-Ridge J. The Functional Significance of Bacterial Predators. mBio 2021; 12:e00466-21. [PMID: 33906922 PMCID: PMC8092244 DOI: 10.1128/mbio.00466-21] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 03/02/2021] [Indexed: 02/07/2023] Open
Abstract
Predation structures food webs, influences energy flow, and alters rates and pathways of nutrient cycling through ecosystems, effects that are well documented for macroscopic predators. In the microbial world, predatory bacteria are common, yet little is known about their rates of growth and roles in energy flows through microbial food webs, in part because these are difficult to quantify. Here, we show that growth and carbon uptake were higher in predatory bacteria compared to nonpredatory bacteria, a finding across 15 sites, synthesizing 82 experiments and over 100,000 taxon-specific measurements of element flow into newly synthesized bacterial DNA. Obligate predatory bacteria grew 36% faster and assimilated carbon at rates 211% higher than nonpredatory bacteria. These differences were less pronounced for facultative predators (6% higher growth rates, 17% higher carbon assimilation rates), though high growth and carbon assimilation rates were observed for some facultative predators, such as members of the genera Lysobacter and Cytophaga, both capable of gliding motility and wolf-pack hunting behavior. Added carbon substrates disproportionately stimulated growth of obligate predators, with responses 63% higher than those of nonpredators for the Bdellovibrionales and 81% higher for the Vampirovibrionales, whereas responses of facultative predators to substrate addition were no different from those of nonpredators. This finding supports the ecological theory that higher productivity increases predator control of lower trophic levels. These findings also indicate that the functional significance of bacterial predators increases with energy flow and that predatory bacteria influence element flow through microbial food webs.IMPORTANCE The word "predator" may conjure images of leopards killing and eating impala on the African savannah or of great white sharks attacking elephant seals off the coast of California. But microorganisms are also predators, including bacteria that kill and eat other bacteria. While predatory bacteria have been found in many environments, it has been challenging to document their importance in nature. This study quantified the growth of predatory and nonpredatory bacteria in soils (and one stream) by tracking isotopically labeled substrates into newly synthesized DNA. Predatory bacteria were more active than nonpredators, and obligate predators, such as Bdellovibrionales and Vampirovibrionales, increased in growth rate in response to added substrates at the base of the food chain, strong evidence of trophic control. This work provides quantitative measures of predator activity and suggests that predatory bacteria-along with protists, nematodes, and phages-are active and important in microbial food webs.
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Sentis A, Montoya JM, Lurgi M. Warming indirectly increases invasion success in food webs. Proc Biol Sci 2021; 288:20202622. [PMID: 33726601 PMCID: PMC8059653 DOI: 10.1098/rspb.2020.2622] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Climate warming and biological invasions are key drivers of biodiversity change. Their combined effects on ecological communities remain largely unexplored. We investigated the direct and indirect influences of temperature on invasion success, and their synergistic effects on community structure and dynamics. Using size-structured food web models, we found that higher temperatures increased invasion success. The direct physiological effects of temperature on invasions were minimal in comparison with indirect effects mediated by changes on food web structure and stability. Warmer communities with less connectivity, shortened food chains and reduced temporal variability were more susceptible to invasions. The directionality and magnitude of invasions effects on food webs varied across temperature regimes. When invaded, warmer communities became smaller, more connected and with more predator species than their colder counterparts. They were also less stable and their species more abundant. Considering food web structure is crucial to predict invasion success and its impacts along temperature gradients.
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Husain L, Berggren N, Remington A, Forster S. Intact Goal-Driven Attentional Capture in Autistic Adults. J Cogn 2021; 4:23. [PMID: 33817551 PMCID: PMC7996432 DOI: 10.5334/joc.156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 03/08/2021] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND Autistic individuals have been found to show increased distractibility by salient irrelevant information, yet reduced distractibility by information of personal motivational salience. Here we tested whether these prior discrepancies reflect differences in the automatic guidance of attention by top-down goals. METHODS Autistic (self-reported diagnoses, confirmed with scores on the Social Responsiveness Scale) and non-autistic adults, without intellectual disability (IQ > 80 on Wechsler Abbreviated Scale of Intelligence), searched for a color-defined target object (e.g., red) among irrelevant color objects. Spatially uninformative cues, matching either the target color or a nontarget/irrelevant color, were presented prior to each display. RESULTS Replicating previous work, only target color cues reliably captured attention, delaying responses when invalidly versus validly predicting target location. Crucially, this capture was robust for both autistic and neurotypical participants, as confirmed by Bayesian analysis. Limitations: While well powered for our research questions, our sample size precluded investigation of the automatic guidance of attention in a diverse group of autistic people (e.g. those with a range of cognitive abilities). CONCLUSIONS Our findings imply that key mechanisms underlying the automatic implementation of top-down attentional goals are intact in autism, challenging theories of reduced top-down control.
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Pastor V, Medina JH. Medial prefrontal cortical control of reward- and aversion-based behavioral output: Bottom-up modulation. Eur J Neurosci 2021; 53:3039-3062. [PMID: 33660363 DOI: 10.1111/ejn.15168] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 02/15/2021] [Accepted: 02/24/2021] [Indexed: 12/22/2022]
Abstract
How does the brain guide our actions? This is a complex issue, where the medial prefrontal cortex (mPFC) plays a crucial role. The mPFC is essential for cognitive flexibility and decision making. These functions are related to reward- and aversion-based learning, which ultimately drive behavior. Though, cortical projections and modulatory systems that may regulate those processes in the mPFC are less understood. How does the mPFC regulate approach-avoidance behavior in the case of conflicting aversive and appetitive stimuli? This is likely dependent on the bottom-up neuromodulation of the mPFC projection neurons. In this review, we integrate behavioral-, pharmacological-, and viral-based circuit manipulation data showing the involvement of mPFC dopaminergic, noradrenergic, cholinergic, and serotoninergic inputs in reward and aversion processing. Given that an incorrect balance of reward and aversion value could be a key problem in mental diseases such as substance use disorders, we discuss outstanding questions for future research on the role of mPFC modulation in reward and aversion.
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Wollrab S, Izmest'yeva Любовь Р Изместьева L, Hampton SE, Silow Евгений А Зилов EA, Litchman E, Klausmeier CA. Climate Change-Driven Regime Shifts in a Planktonic Food Web. Am Nat 2021; 197:281-295. [PMID: 33625965 DOI: 10.1086/712813] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
AbstractPredicting how food webs will respond to global environmental change is difficult because of the complex interplay between the abiotic forcing and biotic interactions. Mechanistic models of species interactions in seasonal environments can help understand the effects of global change in different ecosystems. Seasonally ice-covered lakes are warming faster than many other ecosystems and undergoing pronounced food web changes, making the need to forecast those changes especially urgent. Using a seasonally forced food web model with a generalist zooplankton grazer and competing cold-adapted winter and warm-adapted summer phytoplankton, we show that with declining ice cover, the food web moves through different dynamic regimes, from annual to biennial cycles, with decreasing and then disappearing winter phytoplankton blooms and a shift of maximum biomass to summer season. Interestingly, when predator-prey interactions were not included, a declining ice cover did not cause regime shifts, suggesting that both are needed for regime transitions. A cluster analysis of long-term data from Lake Baikal, Siberia, supports the model results, revealing a change from regularly occurring winter blooms of endemic diatoms to less frequent winter bloom years with decreasing ice cover. Together, the results show that even gradual environmental change, such as declining ice cover duration, may cause discontinuous or abrupt transitions between dynamic regimes in food webs.
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