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McIlvain G, Cerjanic A, Christodoulou AG, McGarry MDJ, Johnson CL. OSCILLATE: A low-rank approach for accelerated magnetic resonance elastography. Magn Reson Med 2022; 88:1659-1672. [PMID: 35649188 PMCID: PMC9339522 DOI: 10.1002/mrm.29308] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 03/29/2022] [Accepted: 04/30/2022] [Indexed: 12/13/2022]
Abstract
PURPOSE MR elastography (MRE) is a technique to characterize brain mechanical properties in vivo. Due to the need to capture tissue deformation in multiple directions over time, MRE is an inherently long acquisition, which limits achievable resolution and use in challenging populations. The purpose of this work is to develop a method for accelerating MRE acquisition by using low-rank image reconstruction to exploit inherent spatiotemporal correlations in MRE data. THEORY AND METHODS The proposed MRE sampling and reconstruction method, OSCILLATE (Observing Spatiotemporal Correlations for Imaging with Low-rank Leveraged Acceleration in Turbo Elastography), involves alternating which k-space points are sampled between each repetition by a reduction factor, ROSC. Using a predetermined temporal basis from a low-resolution navigator in a joint low-rank image reconstruction, all images can be accurately reconstructed from a reduced amount of k-space data. RESULTS Decomposition of MRE displacement data demonstrated that, on average, 96.1% of all energy from an MRE dataset is captured at rank L = 12 (reduced from a full rank of 24). Retrospectively undersampling data with ROSC = 2 and reconstructing at low-rank (L = 12) yields highly accurate stiffness maps with voxel-wise error of 5.8% ± 0.7%. Prospectively undersampled data at ROSC = 2 were successfully reconstructed without loss of material property map fidelity, with average global stiffness error of 1.0% ± 0.7% compared to fully sampled data. CONCLUSIONS OSCILLATE produces whole-brain MRE data at 2 mm isotropic resolution in 1 min 48 s.
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Upadhyay K, Alshareef A, Knutsen AK, Johnson CL, Carass A, Bayly PV, Pham DL, Prince JL, Ramesh KT. Development and validation of subject-specific 3D human head models based on a nonlinear visco-hyperelastic constitutive framework. J R Soc Interface 2022; 19:20220561. [PMCID: PMC9554734 DOI: 10.1098/rsif.2022.0561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Computational head models are promising tools for understanding and predicting traumatic brain injuries. Most available head models are developed using inputs (i.e. head geometry, material properties and boundary conditions) from experiments on cadavers or animals and employ hereditary integral-based constitutive models that assume linear viscoelasticity in part of the rate-sensitive material response. This leads to high uncertainty and poor accuracy in capturing the nonlinear brain tissue response. To resolve these issues, a framework for the development of subject-specific three-dimensional head models is proposed, in which all inputs are derived in vivo from the same living human subject: head geometry via magnetic resonance imaging (MRI), brain tissue properties via magnetic resonance elastography (MRE), and full-field strain-response of the brain under rapid head rotation via tagged MRI. A nonlinear, viscous dissipation-based visco-hyperelastic constitutive model is employed to capture brain tissue response. Head models are validated using quantitative metrics that compare spatial strain distribution, temporal strain evolution, and the magnitude of strain maxima, with the corresponding experimental observations from tagged MRI. Results show that our head models accurately capture the strain-response of the brain. Further, employment of the nonlinear visco-hyperelastic constitutive framework provides improvements in the prediction of peak strains and temporal strain evolution over hereditary integral-based models.
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Gallo CA, Breedlove KM, Johnson CL, DiFabio MS, Buckley TA. Effect Of Ice Hockey Repetitive Head Impacts On Dual Task Tandem Gait Performance. Med Sci Sports Exerc 2022. [DOI: 10.1249/01.mss.0000875864.96902.85] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Upadhyay K, Giovanis DG, Alshareef A, Knutsen AK, Johnson CL, Carass A, Bayly PV, Shields MD, Ramesh K. Data-driven Uncertainty Quantification in Computational Human Head Models. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING 2022; 398:115108. [PMID: 37994358 PMCID: PMC10664838 DOI: 10.1016/j.cma.2022.115108] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2023]
Abstract
Computational models of the human head are promising tools for estimating the impact-induced response of the brain, and thus play an important role in the prediction of traumatic brain injury. The basic constituents of these models (i.e., model geometry, material properties, and boundary conditions) are often associated with significant uncertainty and variability. As a result, uncertainty quantification (UQ), which involves quantification of the effect of this uncertainty and variability on the simulated response, becomes critical to ensure reliability of model predictions. Modern biofidelic head model simulations are associated with very high computational cost and high-dimensional inputs and outputs, which limits the applicability of traditional UQ methods on these systems. In this study, a two-stage, data-driven manifold learning-based framework is proposed for UQ of computational head models. This framework is demonstrated on a 2D subject-specific head model, where the goal is to quantify uncertainty in the simulated strain fields (i.e., output), given variability in the material properties of different brain substructures (i.e., input). In the first stage, a data-driven method based on multi-dimensional Gaussian kernel-density estimation and diffusion maps is used to generate realizations of the input random vector directly from the available data. Computational simulations of a small number of realizations provide input-output pairs for training data-driven surrogate models in the second stage. The surrogate models employ nonlinear dimensionality reduction using Grassmannian diffusion maps, Gaussian process regression to create a low-cost mapping between the input random vector and the reduced solution space, and geometric harmonics models for mapping between the reduced space and the Grassmann manifold. It is demonstrated that the surrogate models provide highly accurate approximations of the computational model while significantly reducing the computational cost. Monte Carlo simulations of the surrogate models are used for uncertainty propagation. UQ of the strain fields highlights significant spatial variation in model uncertainty, and reveals key differences in uncertainty among commonly used strain-based brain injury predictor variables.
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Schneider JM, McIlvain G, Johnson CL. Mechanical Properties of the Developing Brain are Associated with Language Input and Vocabulary Outcome. Dev Neuropsychol 2022; 47:258-272. [PMID: 35938379 PMCID: PMC9397825 DOI: 10.1080/87565641.2022.2108425] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 07/05/2022] [Accepted: 07/26/2022] [Indexed: 11/03/2022]
Abstract
The quality of language that children hear in their environment is associated with the development of language-related brain regions, in turn promoting vocabulary knowledge. Although informative, it remains unknown how these environmental influences alter the structure of neural tissue and subsequent vocabulary outcomes. The current study uses magnetic resonance elastography (MRE) to examine how children's language environments underlie brain tissue mechanical properties, characterized as brain tissue stiffness and damping ratio, and promote vocabulary knowledge. Twenty-five children, ages 5-7, had their audio and video recorded while engaging in a play session with their parents. Children also completed the Picture Vocabulary Task (from NIH Toolbox) and participated in an MRI, where MRE and anatomical images were acquired. Higher quality input was associated with greater stiffness in the bilateral inferior frontal gyrus and right superior temporal gyrus, whereas greater vocabulary knowledge was associated with lower damping ratio in the right inferior frontal gyrus. These findings suggest changes in neural tissue composition are sensitive to malleable aspects of the environment, whereas tissue organization is more strongly associated with vocabulary outcome. Notably, these associations were independent of maternal education, suggesting more proximal measures of a child's environment may be the source of differences in neural tissue structure underlying variability in vocabulary outcomes.
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DiFabio MS, Smith DR, Breedlove KM, Buckley TA, Johnson CL. Relationships between aggression, sensation seeking, brain stiffness, and head impact exposure: Implications for head impact prevention in ice hockey. Brain Behav 2022; 12:e2627. [PMID: 35620849 PMCID: PMC9304837 DOI: 10.1002/brb3.2627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 04/22/2022] [Accepted: 04/23/2022] [Indexed: 11/23/2022] Open
Abstract
OBJECTIVES The objectives of this study were to (1) examine the relationship between the number of head impacts sustained in a season of men's collegiate club ice hockey and behavioral traits of aggression and sensation seeking, and (2) explore the neural correlates of these behaviors using neuroimaging. DESIGN Retrospective cohort study. METHODS Participants (n = 18) completed baseline surveys to quantify self-reported aggression and sensation-seeking tendencies. Aggression related to playing style was quantified through penalty minutes accrued during a season. Participants wore head impact sensors throughout a season to quantify the number of head impacts sustained. Participants (n = 15) also completed baseline anatomical and magnetic elastography neuroimaging scans to measure brain volumetric and viscoelastic properties. Pearson correlation analyses were performed to examine relationships between (1) impacts, aggression, and sensation seeking, and (2) impacts, aggression, and sensation seeking and brain volume, stiffness, and damping ratio, as an exploratory analysis. RESULTS Number of head impacts sustained was significantly related to the number of penalty minutes accrued, normalized to number of games played (r = .62, p < .01). Our secondary, exploratory analysis revealed that number of impacts, sensation seeking, and aggression were related to stiffness or damping ratio of the thalamus, amygdala, hippocampus, and frontal cortex, but not volume. CONCLUSIONS A more aggressive playing style was related to an increased number of head impacts sustained, which may provide evidence for future studies of head impact prevention. Further, magnetic resonance elastography may aid to monitor behavior or head impact exposure. Researchers should continue to examine this relationship and consider targeting behavioral modification programs of aggression to decrease head impact exposure in ice hockey.
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Sanjana F, Delgorio PL, DeConne TM, Johnson CL, Martens CR. Effect of Arterial Stiffness and Cerebral Pulsatility on Hippocampal Tissue Integrity in Healthy Adults. FASEB J 2022. [DOI: 10.1096/fasebj.2022.36.s1.r4512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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McGarry M, Van Houten E, Sowinski D, Jyoti D, Smith DR, Caban-Rivera DA, McIlvain G, Bayly P, Johnson CL, Weaver J, Paulsen K. Mapping heterogenous anisotropic tissue mechanical properties with transverse isotropic nonlinear inversion MR elastography. Med Image Anal 2022; 78:102432. [PMID: 35358836 PMCID: PMC9122015 DOI: 10.1016/j.media.2022.102432] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 01/24/2022] [Accepted: 03/21/2022] [Indexed: 01/23/2023]
Abstract
The white matter tracts of brain tissue consist of highly-aligned, myelinated fibers; white matter is structurally anisotropic and is expected to exhibit anisotropic mechanical behavior. In vivo mechanical properties of tissue can be imaged using magnetic resonance elastography (MRE). MRE can detect and monitor natural and disease processes that affect tissue structure; however, most MRE inversion algorithms assume locally homogenous properties and/or isotropic behavior, which can cause artifacts in white matter regions. A heterogeneous, model-based transverse isotropic implementation of a subzone-based nonlinear inversion (TI-NLI) is demonstrated. TI-NLI reconstructs accurate maps of the shear modulus, damping ratio, shear anisotropy, and tensile anisotropy of in vivo brain tissue using standard MRE motion measurements and fiber directions estimated from diffusion tensor imaging (DTI). TI-NLI accuracy was investigated with using synthetic data in both controlled and realistic settings: excellent quantitative and spatial accuracy was observed and cross-talk between estimated parameters was minimal. Ten repeated, in vivo, MRE scans acquired from a healthy subject were co-registered to demonstrate repeatability of the technique. Good resolution of anatomical structures and bilateral symmetry were evident in MRE images of all mechanical property types. Repeatability was similar to isotropic MRE methods and well within the limits required for clinical success. TI-NLI MRE is a promising new technique for clinical research into anisotropic tissues such as the brain and muscle.
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DiFabio MS, Smith DR, Breedlove KM, Pohlig RT, Buckley TA, Johnson CL. Altered Brain Functional Connectivity in the Frontoparietal Network following an Ice Hockey Season. Eur J Sport Sci 2022; 23:684-692. [PMID: 35466861 DOI: 10.1080/17461391.2022.2069512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
AbstractSustaining sports-related head impacts has been reported to result in neurological changes that potentially lead to later-life neurological disease. Advanced neuroimaging techniques have been used to detect subtle neurological effects resulting from head impacts, even after a single competitive season. The current study used resting-state functional magnetic resonance imaging to assess changes in functional connectivity of the frontoparietal network, a brain network responsible for executive functioning, in collegiate club ice hockey players over one season. Each player was scanned before and after the season and wore accelerometers to measure head impacts at practices and home games throughout the season. We examined pre- to post-season differences in connectivity within the frontoparietal and default mode networks, as well as the relationship between the total number of head impacts sustained and changes in connectivity. We found a significant interaction between network region of interest and time point (p = 0.016), in which connectivity between the left and right posterior parietal cortex seed regions increased over the season (p < 0.01). Number of impacts had a significant effect on frontoparietal network connectivity, such that more impacts were related to greater connectivity differences over the season (p = 0.042). Overall, functional connectivity increased in ice hockey athletes over a season between regions involved in executive functioning, and sensory integration, in particular. Furthermore, those who sustained more impacts had the greatest changes in connectivity. Consistent with prior findings in resting-state sports-related head impact literature, these findings have been suggested to represent brain injury.
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Hiscox LV, McGarry MDJ, Johnson CL. Evaluation of cerebral cortex viscoelastic property estimation with nonlinear inversion magnetic resonance elastography. Phys Med Biol 2022; 67. [PMID: 35316794 PMCID: PMC9208651 DOI: 10.1088/1361-6560/ac5fde] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Accepted: 03/22/2022] [Indexed: 12/25/2022]
Abstract
Objective. Magnetic resonance elastography (MRE) of the brain has shown promise as a sensitive neuroimaging biomarker for neurodegenerative disorders; however, the accuracy of performing MRE of the cerebral cortex warrants investigation due to the unique challenges of studying thinner and more complex geometries.Approach. A series of realistic, whole-brain simulation experiments are performed to examine the accuracy of MRE to measure the viscoelasticity (shear stiffness,μ, and damping ratio, ξ) of cortical structures predominantly effected in aging and neurodegeneration. Variations to MRE spatial resolution and the regularization of a nonlinear inversion (NLI) approach are examined.Main results. Higher-resolution MRE displacement data (1.25 mm isotropic resolution) and NLI with a low soft prior regularization weighting provided minimal measurement error compared to other studied protocols. With the optimized protocol, an average error inμand ξ was 3% and 11%, respectively, when compared with the known ground truth. Mid-line structures, as opposed to those on the cortical surface, generally display greater error. Varying model boundary conditions and reducing the thickness of the cortex by up to 0.67 mm (which is a realistic portrayal of neurodegenerative pathology) results in no loss in reconstruction accuracy.Significance. These experiments establish quantitative guidelines for the accuracy expected ofin vivoMRE of the cortex, with the proposed method providing valid MRE measures for future investigations into cortical viscoelasticity and relationships with health, cognition, and behavior.
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Jyoti D, McGarry M, Van Houten E, Sowinski D, Bayly PV, Johnson CL, Paulsen K. Quantifying stability of parameter estimates for in vivonearly incompressible transversely-isotropic brain MR elastography. Biomed Phys Eng Express 2022; 8. [PMID: 35299161 PMCID: PMC9272913 DOI: 10.1088/2057-1976/ac5ebe] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 03/17/2022] [Indexed: 11/12/2022]
Abstract
Easily computable quality metrics for measured medical data at point-of-care are important for imaging technologies involving offline reconstruction. Accordingly, we developed a new data quality metric forin vivotransversely-isotropic (TI) magnetic resonance elastography (MRE) based on a generalization of the widely accepted octahedral shear-strain calculation. The metric uses MRE displacement data and an estimate of the TI property field to yield a 'stability map' which predicts regions of low versus high accuracy in the resulting material property reconstructions. We can also calculate an average TI parameter stability (TIPS) score over all voxels in a region of interest for a given measurement to indicate how reliable the recovered mechanical property estimate for the region is expected to be. The calculation is rapid and places little demand on computing resources compared to the computationally intensive material property reconstruction from non-linear inversion (TI-NLI) of displacement fields, making it ideal for point-of-care evaluation of data quality. We test the predictions of the stability map for both simulated phantoms andin vivohuman brain data. We used a range of different displacement datasets from vibrations applied in the anterior-posterior (AP), left-right (LR) and combined AP + LR directions. The TIPS and variability maps (noise sensitivity or variation from the mean of repeated MRE scans) were consistently anti-correlated. Notably, Spearman correlation coefficients ∣R∣>0.6 were found between variability and TIPS score for individual white matter tracts within vivodata. These observations demonstrate the reliability and promise of this data quality metric to screen data rapidly in realistic clinical MRE applications.
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Hannum AJ, McIlvain G, Sowinski D, McGarry MD, Johnson CL. Correlated noise in brain magnetic resonance elastography. Magn Reson Med 2022; 87:1313-1328. [PMID: 34687069 PMCID: PMC8776601 DOI: 10.1002/mrm.29050] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 09/13/2021] [Accepted: 09/28/2021] [Indexed: 12/22/2022]
Abstract
PURPOSE Magnetic resonance elastography (MRE) uses phase-contrast MRI to generate mechanical property maps of the in vivo brain through imaging of tissue deformation from induced mechanical vibration. The mechanical property estimation process in MRE can be susceptible to noise from physiological and mechanical sources encoded in the phase, which is expected to be highly correlated. This correlated noise has yet to be characterized in brain MRE, and its effects on mechanical property estimates computed using inversion algorithms are undetermined. METHODS To characterize the effects of signal noise in MRE, we conducted 3 experiments quantifying (1) physiomechanical sources of signal noise, (2) physiological noise because of cardiac-induced movement, and (3) impact of correlated noise on mechanical property estimates. We use a correlation length metric to estimate the extent that correlated signal persists in MRE images and demonstrate the effect of correlated noise on property estimates through simulations. RESULTS We found that both physiological noise and vibration noise were greater than image noise and were spatially correlated across all subjects. Added physiological and vibration noise to simulated data resulted in property maps with higher error than equivalent levels of Gaussian noise. CONCLUSION Our work provides the foundation to understand contributors to brain MRE data quality and provides recommendations for future work to correct for signal noise in MRE.
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Johnson CL, Malko S, Fox W, Schaeffer DB, Fiksel G, Adrian PJ, Sutcliffe GD, Birkel A. Proton deflectometry with in situ x-ray reference for absolute measurement of electromagnetic fields in high-energy-density plasmas. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2022; 93:023502. [PMID: 35232152 DOI: 10.1063/5.0064263] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 01/03/2022] [Indexed: 06/14/2023]
Abstract
We report a technique of proton deflectometry that uses a grid and an in situ reference x-ray grid image for precise measurements of magnetic fields in high-energy-density plasmas. A D3He fusion implosion provides a bright point source of both protons and x-rays, which is split into beamlets by a grid. The protons undergo deflections as they propagate through the plasma region of interest, whereas the x-rays travel along straight lines. The x-ray image, therefore, provides a zero-deflection reference image. The line-integrated magnetic fields are inferred from the shifts of beamlets between the deflected (proton) and reference (x-ray) images. We developed a system for analysis of these data, including automatic algorithms to find beamlet locations and to calculate their deflections from the reference image. The technique is verified in an experiment performed at OMEGA to measure a nonuniform magnetic field in vacuum and then applied to observe the interaction of an expanding plasma plume with the magnetic field.
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McIlvain G, McGarry MDJ, Johnson CL. Quantitative effects of off-resonance related distortion on brain mechanical property estimation with magnetic resonance elastography. NMR IN BIOMEDICINE 2022; 35:e4616. [PMID: 34542196 PMCID: PMC8688217 DOI: 10.1002/nbm.4616] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 07/01/2021] [Accepted: 08/25/2021] [Indexed: 06/13/2023]
Abstract
Off-resonance related geometric distortion can impact quantitative MRI techniques, such as magnetic resonance elastography (MRE), and result in errors to these otherwise sensitive metrics of brain health. MRE is a phase contrast technique to determine the mechanical properties of tissue by imaging shear wave displacements and estimating tissue stiffness through inverse solution of Navier's equation. In this study, we systematically examined the quantitative effects of distortion and corresponding correction approaches on MRE measurements through a series of simulations, phantom models, and in vivo brain experiments. We studied two different k-space trajectories, echo-planar imaging and spiral, and we determined that readout time, off-resonance gradient strength, and the combination of readout direction and off-resonance gradient direction, impact the estimated mechanical properties. Images were also processed through traditional distortion correction pipelines, and we found that each of the correction mechanisms works well for reducing stiffness errors, but are limited in cases of very large distortion. The ability of MRE to detect subtle changes to neural tissue health relies on accurate, artifact-free imaging, and thus off-resonance related geometric distortion must be considered when designing sequences and protocols by limiting readout time and applying correction where appropriate.
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Smith DR, Caban-Rivera DA, McGarry MD, Williams LT, McIlvain G, Okamoto RJ, Van Houten EE, Bayly PV, Paulsen KD, Johnson CL. Anisotropic mechanical properties in the healthy human brain estimated with multi-excitation transversely isotropic MR elastography. BRAIN MULTIPHYSICS 2022; 3. [DOI: 10.1016/j.brain.2022.100051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022] Open
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Bayly PV, Alshareef A, Knutsen AK, Upadhyay K, Okamoto RJ, Carass A, Butman JA, Pham DL, Prince JL, Ramesh KT, Johnson CL. MR Imaging of Human Brain Mechanics In Vivo: New Measurements to Facilitate the Development of Computational Models of Brain Injury. Ann Biomed Eng 2021; 49:2677-2692. [PMID: 34212235 PMCID: PMC8516723 DOI: 10.1007/s10439-021-02820-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 06/22/2021] [Indexed: 01/04/2023]
Abstract
Computational models of the brain and its biomechanical response to skull accelerations are important tools for understanding and predicting traumatic brain injuries (TBIs). However, most models have been developed using experimental data collected on animal models and cadaveric specimens, both of which differ from the living human brain. Here we describe efforts to noninvasively measure the biomechanical response of the human brain with MRI-at non-injurious strain levels-and generate data that can be used to develop, calibrate, and evaluate computational brain biomechanics models. Specifically, this paper reports on a project supported by the National Institute of Neurological Disorders and Stroke to comprehensively image brain anatomy and geometry, mechanical properties, and brain deformations that arise from impulsive and harmonic skull loadings. The outcome of this work will be a publicly available dataset ( http://www.nitrc.org/projects/bbir ) that includes measurements on both males and females across an age range from adolescence to older adulthood. This article describes the rationale and approach for this study, the data available, and how these data may be used to develop new computational models and augment existing approaches; it will serve as a reference to researchers interested in using these data.
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Olivero WC, Biswas A, Wszalek TM, Sutton BP, Johnson CL. Brain stiffness following recovery in a patient with an episode of low-pressure hydrocephalus: case report. Childs Nerv Syst 2021; 37:2695-2698. [PMID: 33030603 DOI: 10.1007/s00381-020-04922-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 10/05/2020] [Indexed: 11/24/2022]
Abstract
The authors describe a follow-up to a case of a 19-year-old female with shunted aqueductal stenosis who presented with low-pressure hydrocephalus during a shunt malfunction. Shortly after management with CSF drainage at negative pressure, a magnetic resonance elastography scan was performed and revealed very low brain stiffness (high compliance). Here we present the case of the same patient seen 2 years later, now 21 years old, who again received a magnetic resonance elastography scan after receiving treatment for another shunt malfunction, this time with high intracranial pressure. This scan revealed recovery of brain stiffness to a near normal value for the patients' age. This observation suggests the low brain stiffness observed during the low-pressure hydrocephalus event is reversible. The authors discuss these findings in relation to biomechanical hypotheses of low-pressure hydrocephalus.
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Ozkaya E, Triolo ER, Rezayaraghi F, Abderezaei J, Meinhold W, Hong K, Alipour A, Kennedy P, Fleysher L, Ueda J, Balchandani P, Eriten M, Johnson CL, Yang Y, Kurt M. Brain-mimicking phantom for biomechanical validation of motion sensitive MR imaging techniques. J Mech Behav Biomed Mater 2021; 122:104680. [PMID: 34271404 DOI: 10.1016/j.jmbbm.2021.104680] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 05/07/2021] [Accepted: 06/30/2021] [Indexed: 10/20/2022]
Abstract
Motion sensitive MR imaging techniques allow for the non-invasive evaluation of biological tissues by using different excitation schemes, including physiological/intrinsic motions caused by cardiac pulsation or respiration, and vibrations caused by an external actuator. The mechanical biomarkers extracted through these imaging techniques have been shown to hold diagnostic value for various neurological disorders and conditions. Amplified MRI (aMRI), a cardiac gated imaging technique, can help track and quantify low frequency intrinsic motion of the brain. As for high frequency actuation, the mechanical response of brain tissue can be measured by applying external high frequency actuation in combination with a motion sensitive MR imaging sequence called Magnetic Resonance Elastography (MRE). Due to the frequency-dependent behavior of brain mechanics, there is a need to develop brain phantom models that can mimic the broadband mechanical response of the brain in order to validate motion-sensitive MR imaging techniques. Here, we have designed a novel phantom test setup that enables both the low and high frequency responses of a brain-mimicking phantom to be captured, allowing for both aMRI and MRE imaging techniques to be applied on the same phantom model. This setup combines two different vibration sources: a pneumatic actuator, for low frequency/intrinsic motion (1 Hz) for use in aMRI, and a piezoelectric actuator for high frequency actuation (30-60 Hz) for use in MRE. Our results show that in MRE experiments performed from 30 Hz through 60 Hz, propagating shear waves attenuate faster at higher driving frequencies, consistent with results in the literature. Furthermore, actuator coupling has a substantial effect on wave amplitude, with weaker coupling causing lower amplitude wave field images, specifically shown in the top-surface shear loading configuration. For intrinsic actuation, our results indicate that aMRI linearly amplifies motion up to at least an amplification factor of 9 for instances of both visible and sub-voxel motion, validated by varying power levels of pneumatic actuation (40%-80% power) under MR, and through video analysis outside the MRI scanner room. While this investigation used a homogeneous brain-mimicking phantom, our setup can be used to study the mechanics of non-homogeneous phantom configurations with bio-interfaces in the future.
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Sanjana F, Delgorio PL, Hiscox LV, DeConne TM, Hobson JC, Cohen ML, Johnson CL, Martens CR. Blood lipid markers are associated with hippocampal viscoelastic properties and memory in humans. J Cereb Blood Flow Metab 2021; 41:1417-1427. [PMID: 33103936 PMCID: PMC8142125 DOI: 10.1177/0271678x20968032] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Revised: 09/18/2020] [Accepted: 09/29/2020] [Indexed: 12/13/2022]
Abstract
Age-related memory loss shares similar risk factors as cardiometabolic diseases including elevated serum triglycerides (TGs) and low-density lipoprotein cholesterol (LDL-C) and reduced high-density lipoprotein cholesterol (HDL-C). The mechanisms linking these aberrant blood lipids to memory loss are not completely understood but may be partially mediated by reduced integrity of the hippocampus (HC), the primary brain structure for encoding and recalling memories. In this study, we tested the hypothesis that blood lipid markers are independently associated with memory performance and HC viscoelasticity-a noninvasive measure of brain tissue microstructural integrity assessed by high-resolution magnetic resonance elastography (MRE). Twenty-six individuals across the adult lifespan were recruited (14 M/12 F; mean age: 42 ± 15 y; age range: 22-78 y) and serum lipid profiles were related to episodic memory and HC viscoelasticity. All subjects were generally healthy without clinically abnormal blood lipids or memory loss. Episodic memory was negatively associated with the TG/HDL-C ratio. HC viscoelasticity was negatively associated with serum TGs and the TG/HDL-C ratio, independent of age and in the absence of associations with HC volume. These data, although cross-sectional, suggest that subtle differences in blood lipid profiles in healthy adults may contribute to a reduction in memory function and HC tissue integrity.
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Hiscox LV, Schwarb H, McGarry MDJ, Johnson CL. Aging brain mechanics: Progress and promise of magnetic resonance elastography. Neuroimage 2021; 232:117889. [PMID: 33617995 PMCID: PMC8251510 DOI: 10.1016/j.neuroimage.2021.117889] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 02/12/2021] [Accepted: 02/15/2021] [Indexed: 02/07/2023] Open
Abstract
Neuroimaging techniques that can sensitivity characterize healthy brain aging and detect subtle neuropathologies have enormous potential to assist in the early detection of neurodegenerative conditions such as Alzheimer's disease. Magnetic resonance elastography (MRE) has recently emerged as a reliable, high-resolution, and especially sensitive technique that can noninvasively characterize tissue biomechanical properties (i.e., viscoelasticity) in vivo in the living human brain. Brain tissue viscoelasticity provides a unique biophysical signature of neuroanatomy that are representative of the composition and organization of the complex tissue microstructure. In this article, we detail how progress in brain MRE technology has provided unique insights into healthy brain aging, neurodegeneration, and structure-function relationships. We further discuss additional promising technical innovations that will enhance the specificity and sensitivity for brain MRE to reveal considerably more about brain aging as well as its potentially valuable role as an imaging biomarker of neurodegeneration. MRE sensitivity may be particularly useful for assessing the efficacy of rehabilitation strategies, assisting in differentiating between dementia subtypes, and in understanding the causal mechanisms of disease which may lead to eventual pharmacotherapeutic development.
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Giudice JS, Alshareef A, Wu T, Knutsen AK, Hiscox LV, Johnson CL, Panzer MB. Calibration of a Heterogeneous Brain Model Using a Subject-Specific Inverse Finite Element Approach. Front Bioeng Biotechnol 2021; 9:664268. [PMID: 34017826 PMCID: PMC8129184 DOI: 10.3389/fbioe.2021.664268] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 04/12/2021] [Indexed: 12/02/2022] Open
Abstract
Central to the investigation of the biomechanics of traumatic brain injury (TBI) and the assessment of injury risk from head impact are finite element (FE) models of the human brain. However, many existing FE human brain models have been developed with simplified representations of the parenchyma, which may limit their applicability as an injury prediction tool. Recent advances in neuroimaging techniques and brain biomechanics provide new and necessary experimental data that can improve the biofidelity of FE brain models. In this study, the CAB-20MSym template model was developed, calibrated, and extensively verified. To implement material heterogeneity, a magnetic resonance elastography (MRE) template image was leveraged to define the relative stiffness gradient of the brain model. A multi-stage inverse FE (iFE) approach was used to calibrate the material parameters that defined the underlying non-linear deviatoric response by minimizing the error between model-predicted brain displacements and experimental displacement data. This process involved calibrating the infinitesimal shear modulus of the material using low-severity, low-deformation impact cases and the material non-linearity using high-severity, high-deformation cases from a dataset of in situ brain displacements obtained from cadaveric specimens. To minimize the geometric discrepancy between the FE models used in the iFE calibration and the cadaveric specimens from which the experimental data were obtained, subject-specific models of these cadaveric brain specimens were developed and used in the calibration process. Finally, the calibrated material parameters were extensively verified using independent brain displacement data from 33 rotational head impacts, spanning multiple loading directions (sagittal, coronal, axial), magnitudes (20–40 rad/s), durations (30–60 ms), and severity. Overall, the heterogeneous CAB-20MSym template model demonstrated good biofidelity with a mean overall CORA score of 0.63 ± 0.06 when compared to in situ brain displacement data. Strains predicted by the calibrated model under non-injurious rotational impacts in human volunteers (N = 6) also demonstrated similar biofidelity compared to in vivo measurements obtained from tagged magnetic resonance imaging studies. In addition to serving as an anatomically accurate model for further investigations of TBI biomechanics, the MRE-based framework for implementing material heterogeneity could serve as a foundation for incorporating subject-specific material properties in future models.
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Johnson CL, Hart LM, Rossetto A, Morgan AJ, Jorm AF. Lessons learnt from the field: a qualitative evaluation of adolescent experiences of a universal mental health education program. HEALTH EDUCATION RESEARCH 2021; 36:126-139. [PMID: 33367691 DOI: 10.1093/her/cyaa050] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 11/26/2020] [Indexed: 06/12/2023]
Abstract
teen Mental Health First Aid (teenMHFA) is a school-based mental health program that trains adolescents to support peers who are experiencing mental health problems or crises. The program has been evaluated for adolescents aged 15-18 years as part of a randomized controlled trial, however qualitative feedback from students on their perceptions of the program is yet to be explored. The current study describes the perspectives of students who took part in the trial. Feedback on the perceived strengths and weaknesses of the program was provided by 979 Year 10 students (M = 15.82 years, female = 43.94%, English as a first language = 72.77%) at four government funded public schools in Melbourne, Australia via online surveys. A content and thematic analysis was performed on the data using a six-step process. Students generally found the program relevant and they connected with the visual material, personal stories and interactive activities. Suggestions for improvements included encouraging active student participation in classroom discussion and providing opportunities to practice skills. School-based mental health education can benefit from input from stakeholder perspectives, particularly when designing mental health content for delivery by external trainers.
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Delgorio PL, Hiscox LV, Daugherty AM, Sanjana F, Pohlig RT, Ellison JM, Martens CR, Schwarb H, McGarry MDJ, Johnson CL. Effect of Aging on the Viscoelastic Properties of Hippocampal Subfields Assessed with High-Resolution MR Elastography. Cereb Cortex 2021; 31:2799-2811. [PMID: 33454745 DOI: 10.1093/cercor/bhaa388] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 11/06/2020] [Accepted: 11/30/2020] [Indexed: 12/13/2022] Open
Abstract
Age-related memory impairments have been linked to differences in structural brain parameters, including the integrity of the hippocampus (HC) and its distinct hippocampal subfields (HCsf). Imaging methods sensitive to the underlying tissue microstructure are valuable in characterizing age-related HCsf structural changes that may relate to cognitive function. Magnetic resonance elastography (MRE) is a noninvasive MRI technique that can quantify tissue viscoelasticity and may provide additional information about aging effects on HCsf health. Here, we report a high-resolution MRE protocol to quantify HCsf viscoelasticity through shear stiffness, μ, and damping ratio, ξ, which reflect the integrity of tissue composition and organization. HCsf exhibit distinct mechanical properties-the subiculum had the lowest μ and both subiculum and entorhinal cortex had the lowest ξ. Both measures correlated with age: HCsf μ was lower with age (P < 0.001) whereas ξ was higher (P = 0.002). The magnitude of age-related differences in ξ varied across HCsf (P = 0.011), suggesting differential patterns of brain aging. This study demonstrates the feasibility of using MRE to assess HCsf microstructural integrity and suggests incorporation of these metrics to evaluate HC health in neurocognitive disorders.
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Alshareef A, Knutsen AK, Johnson CL, Carass A, Upadhyay K, Bayly PV, Pham DL, Prince JL, Ramesh K. Integrating material properties from magnetic resonance elastography into subject-specific computational models for the human brain. BRAIN MULTIPHYSICS 2021; 2. [PMID: 37168236 PMCID: PMC10168673 DOI: 10.1016/j.brain.2021.100038] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Advances in brain imaging and computational methods have facilitated the creation of subject-specific computational brain models that aid researchers in investigating brain trauma using simulated impacts. The emergence of magnetic resonance elastography (MRE) as a non-invasive mechanical neuroimaging tool has enabled in vivo estimation of material properties at low-strain, harmonic loading. An open question in the field has been how this data can be integrated into computational models. The goals of this study were to use a novel MRI dataset acquired in human volunteers to generate models with subject-specific anatomy and material properties, and then to compare simulated brain deformations to subject-specific brain deformation data under non-injurious loading. Models of five subjects were simulated with linear viscoelastic (LVE) material properties estimated directly from MRE data. Model predictions were compared to experimental brain deformation acquired in the same subjects using tagged MRI. Outcomes from the models matched the spatial distribution and magnitude of the measured peak strain components as well as the 95th percentile in-plane peak strains within 0.005 mm/mm and maximum principal strain within 0.012 mm/mm. Sensitivity to material heterogeneity was also investigated. Simulated brain deformations from a model with homogenous brain properties and a model with brain properties discretized with up to ten regions were very similar (a mean absolute difference less than 0.0015 mm/mm in peak strains). Incorporating material properties directly from MRE into a biofidelic subject-specific model is an important step toward future investigations of higher-order model features and simulations under more severe loading conditions.
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Scheeres DJ, French AS, Tricarico P, Chesley SR, Takahashi Y, Farnocchia D, McMahon JW, Brack DN, Davis AB, Ballouz RL, Jawin ER, Rozitis B, Emery JP, Ryan AJ, Park RS, Rush BP, Mastrodemos N, Kennedy BM, Bellerose J, Lubey DP, Velez D, Vaughan AT, Leonard JM, Geeraert J, Page B, Antreasian P, Mazarico E, Getzandanner K, Rowlands D, Moreau MC, Small J, Highsmith DE, Goossens S, Palmer EE, Weirich JR, Gaskell RW, Barnouin OS, Daly MG, Seabrook JA, Al Asad MM, Philpott LC, Johnson CL, Hartzell CM, Hamilton VE, Michel P, Walsh KJ, Nolan MC, Lauretta DS. Heterogeneous mass distribution of the rubble-pile asteroid (101955) Bennu. SCIENCE ADVANCES 2020; 6:eabc3350. [PMID: 33033036 PMCID: PMC7544499 DOI: 10.1126/sciadv.abc3350] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 09/16/2020] [Indexed: 05/18/2023]
Abstract
The gravity field of a small body provides insight into its internal mass distribution. We used two approaches to measure the gravity field of the rubble-pile asteroid (101955) Bennu: (i) tracking and modeling the spacecraft in orbit about the asteroid and (ii) tracking and modeling pebble-sized particles naturally ejected from Bennu's surface into sustained orbits. These approaches yield statistically consistent results up to degree and order 3, with the particle-based field being statistically significant up to degree and order 9. Comparisons with a constant-density shape model show that Bennu has a heterogeneous mass distribution. These deviations can be modeled with lower densities at Bennu's equatorial bulge and center. The lower-density equator is consistent with recent migration and redistribution of material. The lower-density center is consistent with a past period of rapid rotation, either from a previous Yarkovsky-O'Keefe-Radzievskii-Paddack cycle or arising during Bennu's accretion following the disruption of its parent body.
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