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Sawyer SJ, Eubanks MD, Beasley JC, Barton BT, Puckett RT, Tomeček JM, Tomberlin JK. Vertebrate and invertebrate competition for carrion in human‐impacted environments depends on abiotic factors. Ecosphere 2022. [DOI: 10.1002/ecs2.4151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
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Patterson JR, DeVault TL, Beasley JC. Integrating terrestrial scavenging ecology into contemporary wildlife conservation and management. Ecol Evol 2022; 12:e9122. [PMID: 35866022 PMCID: PMC9289120 DOI: 10.1002/ece3.9122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 06/25/2022] [Accepted: 06/27/2022] [Indexed: 11/22/2022] Open
Abstract
Scavenging plays a vital role in maintaining ecosystem health and contributing to ecological functions; however, research in this sub‐discipline of ecology is underutilized in developing and implementing wildlife conservation and management strategies. We provide an examination of the literature and recommend priorities for research where improved understanding of scavenging dynamics can facilitate the development and refinement of applied wildlife conservation and management strategies. Due to the application of scavenging research broadly within ecology, scavenging studies should be implemented for informing management decisions. In particular, a more direct link should be established between scavenging dynamics and applied management programs related to informing pharmaceutical delivery and population control through bait uptake for scavenging species, prevention of unintentional poisoning of nontarget scavenging species, the epidemiological role that scavenging species play in disease dynamics, estimating wildlife mortalities, nutrient transfer facilitated by scavenging activity, and conservation of imperiled facultative scavenging species. This commentary is intended to provide information on the paucity of data in scavenging research and present recommendations for further studies that can inform decisions in wildlife conservation and management. Additionally, we provide a framework for decision‐making when determining how to apply scavenging ecology research for management practices and policies. Due to the implications that scavenging species have on ecosystem health, and their overall global decline as a result of anthropic activities, it is imperative to advance studies in the field of scavenging ecology that can inform applied conservation and management programs.
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Butler-Valverde MJ, DeVault TL, Beasley JC. Trophic interactions at avian carcasses: Do scavengers feed on vulture carrion? FOOD WEBS 2022. [DOI: 10.1016/j.fooweb.2022.e00230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Webster SC, Beasley JC, Hinton JW, Chamberlain MJ. Resident and transient coyotes exhibit differential patterns of movement behavior across heterogeneous landscapes in the southeastern United States. Ecol Evol 2022; 12:e8725. [PMID: 35356555 PMCID: PMC8939292 DOI: 10.1002/ece3.8725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 02/07/2022] [Accepted: 02/17/2022] [Indexed: 11/08/2022] Open
Abstract
Coyotes (Canis latrans) are a highly adaptable canid species whose behavioral plasticity has allowed them to persist in a wide array of habitats throughout North America. As generalists, coyotes can alter movement patterns and change territorial strategies between residency (high site fidelity) and transiency (low site fidelity) to maximize fitness. Uncertainty remains about resident and transient coyote movement patterns and habitat use because research has reached conflicting conclusions regarding patterns of habitat use by both groups. We quantified effects of habitat on resident and transient coyote movement behavior using first passage time (FPT) analysis, which assesses recursive movement along an individual's movement path to delineate where they exhibit area‐restricted search (ARS) behaviors relative to habitat attributes. We quantified monthly movement rates for 171 coyotes (76 residents and 53 transients) and then used estimated FPT values in generalized linear mixed models to quantify monthly habitat use for resident and transient coyotes. Transients had greater movement rates than residents across all months except January. Resident FPT values were positively correlated with agricultural land cover during fall and winter, but negatively correlated with agriculture during spring. Resident FPT values were also negatively correlated with developed habitats during May–August, deciduous land cover during June–August, and wetlands during September–January except November. FPT values of transient coyotes were positively correlated with developed areas throughout much of the year and near wetlands during July–September. Transient FPT values were negatively correlated with agriculture during all months except June and July. High FPT values (ARS behavior) of residents and transients were generally correlated with greater densities of edge habitat. Although we observed high individual variation in space use, our study found substantive differences in habitat use between residents and transients, providing further evidence that complexity and plasticity of coyote habitat use is influenced by territorial strategy.
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Clontz LM, Pepin KM, VerCauteren KC, Beasley JC. Influence of biotic and abiotic factors on home range size and shape of invasive wild pigs (Sus scrofa). PEST MANAGEMENT SCIENCE 2022; 78:914-928. [PMID: 34719092 DOI: 10.1002/ps.6701] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 10/18/2021] [Accepted: 10/30/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Determining factors influencing animal movements at a temporal scale that is similar to that at which management actions are conducted (e.g. weekly) is crucial for identifying efficient methods of wildlife conservation and management. Using global positioning system (GPS) data from 49 wild pigs in the southeast United States, we constructed weekly 50% and 95% utilization distributions to quantify the effects of biotic and abiotic factors on weekly core area and home range size, as well as home range shape. RESULTS We found vegetative composition (i.e. proportion of bottomland hardwoods), season (based on forage availability), meteorological conditions (i.e. temperature and pressure), and sex influenced wild pig weekly home range and core area size, while vegetative composition (i.e. proportion of upland pines) and landscape features (i.e. distance to streams) also were important factors influencing home range shape. At close distances to streams, wild pigs had more elongate home ranges when their home ranges comprised less upland pine habitat; however, farther from streams, there was no change in home range shape across fluctuating proportions of upland pines. CONCLUSION These results demonstrate that fine-scale wild pig home ranges and movements are pliable from week to week and influenced by several habitat, landscape, and meteorological attributes that can easily be quantified from available land use and meteorological databases. These findings are important for designing monitoring studies, identifying high risk zones for disease transmission, planning response to disease emergence events, and allowing more effective and efficient short-term management planning.
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Street GM, Potts JR, Börger L, Beasley JC, Demarais S, Fryxell JM, McLoughlin PD, Monteith KL, Prokopenko CM, Ribeiro MC, Rodgers AR, Strickland BK, Beest FM, Bernasconi DA, Beumer LT, Dharmarajan G, Dwinnell SP, Keiter DA, Keuroghlian A, Newediuk LJ, Oshima JEF, Rhodes O, Schlichting PE, Schmidt NM, Vander Wal E. Solving the sample size problem for resource selection functions. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13701] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Turner KL, Conner LM, Beasley JC. Effects of red imported fire ant (Solenopsis invicta) control on carrion use by vertebrate scavengers. FOOD WEBS 2021. [DOI: 10.1016/j.fooweb.2021.e00212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Cunningham K, Hinton TG, Luxton JJ, Bordman A, Okuda K, Taylor LE, Hayes J, Gerke HC, Chinn SM, Anderson D, Laudenslager ML, Takase T, Nemoto Y, Ishiniwa H, Beasley JC, Bailey SM. Evaluation of DNA damage and stress in wildlife chronically exposed to low-dose, low-dose rate radiation from the Fukushima Dai-ichi Nuclear Power Plant accident. ENVIRONMENT INTERNATIONAL 2021; 155:106675. [PMID: 34120002 DOI: 10.1016/j.envint.2021.106675] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Revised: 05/24/2021] [Accepted: 05/25/2021] [Indexed: 06/12/2023]
Abstract
The health effects associated with chronic low-dose, low-dose rate (LD-LDR) exposures to environmental radiation are uncertain. All dose-effect studies conducted outside controlled laboratory conditions are challenged by inherent complexities of ecological systems and difficulties quantifying dose to free-ranging organisms in natural environments. Consequently, the effects of chronic LD-LDR radiation exposures on wildlife health remain poorly understood and much debated. Here, samples from wild boar (Sus scrofa leucomystax) and rat snakes (Elaphe spp.) were collected between 2016 and 2018 across a gradient of radiation exposures in Fukushima, Japan. In vivo biomarkers of DNA damage and stress were evaluated as a function of multiple measurements of radiation dose. Specifically, we assessed frequencies of dicentric chromosomes (Telomere-Centromere Fluorescence in situ Hybridization: TC-FISH), telomere length (Telo-FISH, qPCR), and cortisol hormone levels (Enzyme Immunoassay: EIA) in wild boar, and telomere length (qPCR) in snakes. These biological parameters were then correlated to robust calculations of radiation dose rate at the time of capture and plausible upper bound lifetime dose, both of which incorporated internal and external dose. No significant relationships were observed between dicentric chromosome frequencies or telomere length and dose rate at capture or lifetime dose (p value range: 0.20-0.97). Radiation exposure significantly associated only with cortisol, where lower concentrations were associated with higher dose rates (r2 = 0.58; p < 0.0001), a relationship that was likely due to other (unmeasured) factors. Our results suggest that wild boar and snakes chronically exposed to LD-LDR radiation sufficient to prohibit human occupancy were not experiencing significant adverse health effects as assessed by biomarkers of DNA damage and stress.
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Kilgo JC, Garabedian JE, Vukovich M, Schlichting PE, Byrne ME, Beasley JC. Food resources affect territoriality of invasive wild pig sounders with implications for control. Sci Rep 2021; 11:18821. [PMID: 34552124 PMCID: PMC8458451 DOI: 10.1038/s41598-021-97798-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 08/30/2021] [Indexed: 11/13/2022] Open
Abstract
Interest in control methods for invasive wild pigs (Sus scrofa) has increased due to their range expansion, population growth, and an improved understanding of their destructive ecological and economic effects. Recent technological advances in traps for control of pig populations facilitate capture of entire social groups (sounders), but the efficacy of “whole-sounder” trapping strategies is heavily dependent on the degree of territoriality among sounders, a topic little research has explored. We assessed territoriality in wild pig sounders on the Savannah River Site, South Carolina, USA, and examined whether availability of food resources provided by a municipal-waste landfill affected among-sounder territoriality. We estimated utilization distribution overlap and dynamic interactions among 18 neighboring sounders around a landfill. We found that although neighboring sounders overlapped in space, intensity of use in shared areas was uniformly low, indicating territorial behavior. Neighbors tended to share slightly more space when closer to the landfill waste cells, indicating availability of a super-abundant resource somewhat weakens the degree of territoriality among sounders. Nevertheless, we conclude that sounders behaved in a generally territorial manner, and we discuss implications for whole-sounder trapping programs, particularly near concentrated resources such as landfills and crop fields.
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Sebastián-González E, Morales-Reyes Z, Botella F, Naves-Alegre L, Pérez-García JM, Mateo-Tomás P, Olea PP, Moleón M, Barbosa JM, Hiraldo F, Arrondo E, Donázar JA, Cortés-Avizanda A, Selva N, Lambertucci SA, Bhattacharjee A, Brewer AL, Abernethy EF, Turner KL, Beasley JC, DeVault TL, Gerke HC, Rhodes OE, Ordiz A, Wikenros C, Zimmermann B, Wabakken P, Wilmers CC, Smith JA, Kendall CJ, Ogada D, Frehner E, Allen ML, Wittmer HU, Butler JRA, du Toit JT, Margalida A, Oliva-Vidal P, Wilson D, Jerina K, Krofel M, Kostecke R, Inger R, Per E, Ayhan Y, Sancı M, Yılmazer Ü, Inagaki A, Koike S, Samson A, Perrig PL, Spencer EE, Newsome TM, Heurich M, Anadón JD, Buechley ER, Gutiérrez-Cánovas C, Elbroch LM, Sánchez-Zapata JA. Functional traits driving species role in the structure of terrestrial vertebrate scavenger networks. Ecology 2021; 102:e03519. [PMID: 34449876 DOI: 10.1002/ecy.3519] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 05/10/2021] [Accepted: 05/24/2021] [Indexed: 11/11/2022]
Abstract
Species assemblages often have a non-random nested organization, which in vertebrate scavenger (carrion-consuming) assemblages is thought to be driven by facilitation in competitive environments. However, not all scavenger species play the same role in maintaining assemblage structure, as some species are obligate scavengers (i.e., vultures) and others are facultative, scavenging opportunistically. We used a database with 177 vertebrate scavenger species from 53 assemblages in 22 countries across five continents to identify which functional traits of scavenger species are key to maintaining the scavenging network structure. We used network analyses to relate ten traits hypothesized to affect assemblage structure with the "role" of each species in the scavenging assemblage in which it appeared. We characterized the role of a species in terms of both the proportion of monitored carcasses on which that species scavenged, or scavenging breadth (i.e., the species "normalized degree"), and the role of that species in the nested structure of the assemblage (i.e., the species "paired nested degree"), therefore identifying possible facilitative interactions among species. We found that species with high olfactory acuity, social foragers, and obligate scavengers had the widest scavenging breadth. We also found that social foragers had a large paired nested degree in scavenger assemblages, probably because their presence is easier to detect by other species to signal carcass occurrence. Our study highlights differences in the functional roles of scavenger species and can be used to identify key species for targeted conservation to maintain the ecological function of scavenger assemblages.
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Webster SC, Chamberlain MJ, Hinton JW, Beasley JC. Isotope analysis reveals dietary overlap among sympatric canids. J Mammal 2021. [DOI: 10.1093/jmammal/gyab077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
When colonizing new regions, invading species might compete strongly with phylogenetically related species native to the regions they are colonizing, eventually leading to coexistence or displacement. In the southeast of the United States, recently established coyotes (Canis latrans) compete with red fox (Vulpes vulpes) and gray fox (Urocyon cinereoargenteus), although it remains unclear if competition is leading to resource partitioning or displacement by species. Using nitrogen and carbon stable isotopes, we tested the hypothesis that coyotes compete with foxes for food resources, with canids partitioning those resources to mitigate competition. We compared diets of canids in the southeast to those in the Plains region of the United States, a region where all three species historically have coexisted. We analyzed 217 hair samples from both regions pre-1960, prior to coyote colonization of the southeast, and post-2000, after coyotes were ubiquitous there, to assess differences in diet among species for both regions (southeast versus Plains and time periods, pre- versus postcolonization by coyotes). Modeling revealed significant dietary overlap among historical and contemporary populations in the southeast. Historically, all species partitioned resources in the Plains. Contemporarily, red fox and coyotes co-occurring in the Plains overlapped in diet; however, gray fox diet did not overlap with those of red fox and coyotes. Absence of partitioning in diet among co-occurring canids in the southeast indicates that interspecific competition could be strong in the region. Competition among canid populations in the southeast could lead to further resource partitioning among species that promotes coexistence or competitive exclusion of smaller fox species where coyote populations are abundant.
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Yang A, Boughton RK, Miller RS, Wight B, Anderson WM, Beasley JC, VerCauteren KC, Pepin KM, Wittemyer G. Spatial variation in direct and indirect contact rates at the wildlife-livestock interface for informing disease management. Prev Vet Med 2021; 194:105423. [PMID: 34246115 DOI: 10.1016/j.prevetmed.2021.105423] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 06/28/2021] [Accepted: 07/01/2021] [Indexed: 12/18/2022]
Abstract
Little is known about disease transmission relevant contact rates at the wildlife-livestock interface and the factors shaping them. Indirect contact via shared resources is thought to be important but remains unquantified in most systems, making it challenging to evaluate the impact of livestock management practices on contact networks. Free-ranging wild pigs (Sus scrofa) in North America are an invasive, socially-structured species with an expanding distribution that pose a threat to livestock health given their potential to transmit numerous livestock diseases, such as pseudorabies, brucellosis, trichinellosis, and echinococcosis, among many others. Our objective in this study was to quantify the spatial variations in direct and indirect contact rates among wild pigs and cattle on a commercial cow-calf operation in Florida, USA. Using GPS data from 20 wild pigs and 11 cattle and a continuous-time movement model, we extracted three types of spatial contacts between wild pigs and cattle, including direct contact, indirect contact in the pastoral environment (unknown naturally occurring resources), and indirect contact via anthropogenic cattle resources (feed supplements and water supply troughs). We examined the effects of sex, spatial proximity, and cattle supplement availability on contact rates at the species level and characterized wild pig usage of cattle supplements. Our results suggested daily pig-cattle direct contacts occurred only occasionally, while a significant number of pig-cattle indirect contacts occurred via natural resources distributed heterogeneously across the landscape. At cattle supplements, more indirect contacts occurred at liquid molasses than water troughs or molasses-mineral block tubs due to higher visitation rates by wild pigs. Our results can be directly used for parameterizing epidemiological models to inform risk assessment and optimal control strategies for controlling transmission of shared diseases.
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Beasley JC, Clontz LM, Rakowski A, Snow NP, VerCauteren KC. Evaluation of a warfarin bait for controlling invasive wild pigs (Sus scrofa). PEST MANAGEMENT SCIENCE 2021; 77:3057-3067. [PMID: 33644948 DOI: 10.1002/ps.6351] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 02/09/2021] [Accepted: 02/28/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Wild pigs (Sus scrofa) cause widespread environmental and economic damage, and as a result are subjected to extensive control. Current management strategies have proven insufficient, and there is growing interest in use of toxicants to control invasive populations of this species. In 2017 a low-dose warfarin bait was federally approved for use in controlling wild pigs in the United States. However, no states have allowed use of this bait due to unanswered questions regarding welfare concerns, field efficacy, and non-target impacts. RESULTS All captive wild pigs fed 0.005% warfarin baits in no choice feeding trials succumbed in an average of 8 days from exposure. Behavioral symptoms of warfarin exposure included vomiting, external bleeding, abnormal breathing, incoordination, and limping. Postmortem examinations revealed hemorrhaging in organs and muscles, particularly the legs, gastrointestinal tract, and abdomen. Warfarin residues in tissues averaged 1.0 mg kg-1 for muscle, 3.9 mg kg-1 for liver, and 2.8 mg kg-1 for small intestines. Field testing revealed wild pigs required extensive training to access bait within pig-specific bait stations, and once acclimated, exhibited reluctance to consume toxic baits, resulting in no mortalities across two separate field deployments of toxic bait. CONCLUSION Our results suggest wild pigs are susceptible to low-dose warfarin, and warfarin residues in pig tissues postmortem are generally low. However, although warfarin-based baits are currently approved for use by the US Environmental Protection Agency, further improvements to pig-specific bait delivery systems and bait palatability are needed, as well as additional research to quantify efficacy, cost, and non-target impacts prior to widespread implementation. © 2021 Society of Chemical Industry. This article has been contributed to by US Government employees and their work is in the public domain in the USA.
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Chinn SM, Kilgo JC, Vukovich MA, Beasley JC. Influence of intrinsic and extrinsic attributes on neonate survival in an invasive large mammal. Sci Rep 2021; 11:11033. [PMID: 34040083 PMCID: PMC8155080 DOI: 10.1038/s41598-021-90495-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 05/12/2021] [Indexed: 02/04/2023] Open
Abstract
Understanding factors influencing survival of neonates for wild species is important for successful management, particularly for determining drivers of population dynamics. Wild pigs (Sus scrofa) are invasive and populations are rapidly increasing in part due to high reproductive capacity. Survival of adults is generally high, however, survival of piglets, and particularly neonates, is largely unknown. We located neonates at the natal nest and quantified survival in relation to individual and maternal biological attributes, and environmental variables. During 2017-2020, we captured 50 neonates from 13 litters and documented 28 mortalities (56%) over six weeks. Survival was positively influenced by pelage coloration, likely as a form of camouflage from predators. Male neonates had higher survival. They were born larger than females, which could be beneficial for thermoregulation and competition for milk. Neonates born to larger sows had lower survival. Sow size was positively correlated with litter size, and this finding may reflect the increased nutritional demands of sustaining large litters, or difficulties in defending more neonates against predators. Neonates born in warmer months had higher survival than those born in cooler months. Neonates are inefficient thermoregulators, thus being born in warmer months could be beneficial for maintaining homeostasis as well as access to more food resources. These are the largest and most complete data for neonate wild pig survival and will inform population models for the development of management strategies to reduce negative impacts of this destructive invasive species on native ecosystems.
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Tisdale CA, Leaphart JC, Beasley JC, Martin JA. Accumulation of Contaminants by Wild Turkeys and Potential for Consumer Exposure. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2021; 40:1222-1231. [PMID: 33332657 DOI: 10.1002/etc.4967] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Revised: 10/14/2020] [Accepted: 12/14/2020] [Indexed: 06/12/2023]
Abstract
Despite their popularity as a game species across North America, little is known about contaminant burdens in wild turkeys (Meleagris gallopavo) inhabiting areas of environmental contamination, and their potential to expose human and wildlife consumers. We compared trace element concentrations and radionuclide activity in muscle and liver tissues of turkeys inhabiting the Savannah River Site (USA), an area with known anthropogenic contaminant inputs, with turkeys from uncontaminated areas offsite. In addition, we tested breast feathers from a subset of individuals for mercury (Hg) to assess the viability of nonlethal sampling for quantifying Hg concentrations. Finally, we quantified arsenic, Hg, and selenium (Se) in blood of live-captured turkeys inhabiting a coal ash basin on the Savannah River Site. Compared with reference samples, we found that turkeys inhabiting the Savannah River Site contained elevated Hg levels in both muscle and liver tissues, and lower concentrations of chromium. Turkeys from the ash basin also had elevated levels of Se. We found a positive correlation between breast muscle and feather Hg concentrations (F1,59 = 267.5, R2 = 0.82, p < 0.001), suggesting that feathers can potentially be used as a nonlethal sampling technique. All elements analyzed were below reference limits set by the Centers for Disease Control and Prevention for safe consumption. Thus, our data suggest that turkeys likely are not an important pathway of contaminant exposure on the Savannah River Site or other areas with similar contaminant distributions. Environ Toxicol Chem 2021;40:1222-1231. © 2020 SETAC.
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Kheidorova EE, Homel KV, Nikiforov ME, Shpak AV, Dombrovski VC, Shkvyrya MS, Schlichting PE, Beasley JC, Vishnevsky DA, Yakovlev YB. Genetic diversity of the free-living population of Przewalski's horses in the Chernobyl Exclusion Zone. THERIOLOGIA UKRAINICA 2021. [DOI: 10.15407/tu2008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The present study is aimed at evaluating the genetic diversity, genetic status and the extent of hybridization with the domestic horse for the Przhevalski’s horse (Equus ferus przewalskii Poliakov 1881) population free-ranging in the territory of the Chernobyl Exclusion Zone (CEZ) in Belarus and Ukraine. The sample size included 12 individuals (10 sampled in the Belarusian part of the CEZ and 2 from the Ukrainian part of the CEZ). Ten microsatellites recommended by the International Society for Animal Genetics (ISAG) for horse genetic status and pedigree determination were used as markers in this study. The fragment analysis data obtained utilising this microsatellite panel determined that two individuals from Belarus possess no allelic variants typical for Przhevalski’s horse. Most of the other individuals presented diagnostically valuable allelic variants. Demographic history analysis for the population did not indicate any drastic population shrinkage events in the population’s recent history. The studied population is characterised by heterogeneous population structure with signs of inbreeding (0.21 %), intermediate level of genetic diversity (He = 0.63) and allelic richness (5.15), possesses 16 unique alleles among 2 microsatellite loci and valuable alleles for loci HMS3 and HMS7 (46.4 and 67.9 % specific alleles for Przhevalski’s horse, respectively). Genetic structure evaluation for the population was performed via Bayesian population structure analysis and factorial correspondence analysis (FCA), which indicated the presence of intrapopulation genetic subdivision. Taking into account the obtained indicators of genetic diversity, we may conclude on the relatively favourable status of Przewalski’s horse in the exclusion zone with good potential for the long-term existence of the species population in the wild. In order to minimise inbreeding effects and the risk of a decline in genetic diversity in the population of Przewalski’s horse of the exclusion zone, as well as to increase the value of this free-living group to preserve the gene pool of the species as a whole, it is necessary to provide detailed genetic monitoring of the livestock’s state, as well as develop a regional population management plan, including measures aimed to minimise the possibility of further hybridisation of wild horses with domestic ones.
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Yang A, Schlichting P, Wight B, Anderson WM, Chinn SM, Wilber MQ, Miller RS, Beasley JC, Boughton RK, VerCauteren KC, Wittemyer G, Pepin KM. Effects of social structure and management on risk of disease establishment in wild pigs. J Anim Ecol 2021; 90:820-833. [PMID: 33340089 DOI: 10.1111/1365-2656.13412] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Accepted: 11/16/2020] [Indexed: 11/29/2022]
Abstract
Contact heterogeneity among hosts determines invasion and spreading dynamics of infectious disease, thus its characterization is essential for identifying effective disease control strategies. Yet, little is known about the factors shaping contact networks in many wildlife species and how wildlife management actions might affect contact networks. Wild pigs in North America are an invasive, socially structured species that pose a health concern for domestic swine given their ability to transmit numerous devastating diseases such as African swine fever (ASF). Using proximity loggers and GPS data from 48 wild pigs in Florida and South Carolina, USA, we employed a probabilistic framework to estimate weighted contact networks. We determined the effects of sex, social group and spatial distribution (monthly home-range overlap and distance) on wild pig contact. We also estimated the impacts of management-induced perturbations on contact and inferred their effects on ASF establishment in wild pigs with simulation. Social group membership was the primary factor influencing contacts. Between-group contacts depended primarily on space use characteristics, with fewer contacts among groups separated by >2 km and no contacts among groups >4 km apart within a month. Modelling ASF dynamics on the contact network demonstrated that indirect contacts resulting from baiting (a typical method of attracting wild pigs or game species to a site to enhance recreational hunting) increased the risk of disease establishment by ~33% relative to direct contact. Low-intensity population reduction (<5.9% of the population) had no detectable impact on contact structure but reduced predicted ASF establishment risk relative to no population reduction. We demonstrate an approach for understanding the relative role of spatial, social and individual-level characteristics in shaping contact networks and predicting their effects on disease establishment risk, thus providing insight for optimizing disease control in spatially and socially structured wildlife species.
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Bastille-Rousseau G, Schlichting PE, Keiter DA, Smith JB, Kilgo JC, Wittemyer G, Vercauteren KC, Beasley JC, Pepin KM. Multi-level movement response of invasive wild pigs (Sus scrofa) to removal. PEST MANAGEMENT SCIENCE 2021; 77:85-95. [PMID: 32738020 DOI: 10.1002/ps.6029] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 07/15/2020] [Accepted: 08/01/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Lethal removal of invasive species, such as wild pigs (Sus scrofa), is often the most efficient approach for reducing their negative impacts. Wild pigs are one of the most widespread and destructive invasive mammals in the USA. Lethal management techniques are a key approach for wild pigs and can alter wild pig spatial behavior, but it is unclear how wild pigs respond to the most common removal technique, trapping. We investigated the spatial behavior of wild pigs following intensive removal of conspecifics via trapping at three sites within the Savannah River Site, SC, USA. We evaluated changes in wild pig densities, estimated temporal shifts in home-range properties, and evaluated fine-scale movement responses of wild pigs to removal. RESULTS We observed a significant reduction in the density of wild pigs in one site following removal via trapping while a qualitative reduction was observed in another site. We found little evidence of shifts in pig home-ranging behavior following removal. However, we did observe a nuanced response in movement behavior of wild pigs to the removal at the scale of the GPS locations (4 h), including increased movement speed and reduced selection for vegetation rich areas. CONCLUSION Our work provides a better understanding of the impact of removal via trapping on wild pig movement and its implications for management. The lack of shift in home-range characteristics observed illustrates how targeted trapping could be used to provide temporary relief for species sensitive to wild pig consumption such as ground nesting birds or agricultural crops.
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Tabak MA, Norouzzadeh MS, Wolfson DW, Newton EJ, Boughton RK, Ivan JS, Odell EA, Newkirk ES, Conrey RY, Stenglein J, Iannarilli F, Erb J, Brook RK, Davis AJ, Lewis J, Walsh DP, Beasley JC, VerCauteren KC, Clune J, Miller RS. Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2. Ecol Evol 2020; 10:10374-10383. [PMID: 33072266 PMCID: PMC7548173 DOI: 10.1002/ece3.6692] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 06/29/2020] [Accepted: 07/31/2020] [Indexed: 11/24/2022] Open
Abstract
Motion‐activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter‐out images that do not contain animals. These approaches are often limited by model transferability, as a model trained to recognize species from one location might not work as well for the same species in different locations. Furthermore, these methods often require advanced computational skills, making them inaccessible to many biologists. We used 3 million camera trap images from 18 studies in 10 states across the United States of America to train two deep neural networks, one that recognizes 58 species, the “species model,” and one that determines if an image is empty or if it contains an animal, the “empty‐animal model.” Our species model and empty‐animal model had accuracies of 96.8% and 97.3%, respectively. Furthermore, the models performed well on some out‐of‐sample datasets, as the species model had 91% accuracy on species from Canada (accuracy range 36%–91% across all out‐of‐sample datasets) and the empty‐animal model achieved an accuracy of 91%–94% on out‐of‐sample datasets from different continents. Our software addresses some of the limitations of using machine learning to classify images from camera traps. By including many species from several locations, our species model is potentially applicable to many camera trap studies in North America. We also found that our empty‐animal model can facilitate removal of images without animals globally. We provide the trained models in an R package (MLWIC2: Machine Learning for Wildlife Image Classification in R), which contains Shiny Applications that allow scientists with minimal programming experience to use trained models and train new models in six neural network architectures with varying depths.
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Rhodes OE, Bréchignac F, Bradshaw C, Hinton TG, Mothersill C, Arnone JA, Aubrey DP, Barnthouse LW, Beasley JC, Bonisoli-Alquati A, Boring LR, Bryan AL, Capps KA, Clément B, Coleman A, Condon C, Coutelot F, DeVol T, Dharmarajan G, Fletcher D, Flynn W, Gladfelder G, Glenn TC, Hendricks S, Ishida K, Jannik T, Kapustka L, Kautsky U, Kennamer R, Kuhne W, Lance S, Laptyev G, Love C, Manglass L, Martinez N, Mathews T, McKee A, McShea W, Mihok S, Mills G, Parrott B, Powell B, Pryakhin E, Rypstra A, Scott D, Seaman J, Seymour C, Shkvyria M, Ward A, White D, Wood MD, Zimmerman JK. Integration of ecosystem science into radioecology: A consensus perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 740:140031. [PMID: 32559536 DOI: 10.1016/j.scitotenv.2020.140031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 06/04/2020] [Accepted: 06/04/2020] [Indexed: 06/11/2023]
Abstract
In the Fall of 2016 a workshop was held which brought together over 50 scientists from the ecological and radiological fields to discuss feasibility and challenges of reintegrating ecosystem science into radioecology. There is a growing desire to incorporate attributes of ecosystem science into radiological risk assessment and radioecological research more generally, fueled by recent advances in quantification of emergent ecosystem attributes and the desire to accurately reflect impacts of radiological stressors upon ecosystem function. This paper is a synthesis of the discussions and consensus of the workshop participant's responses to three primary questions, which were: 1) How can ecosystem science support radiological risk assessment? 2) What ecosystem level endpoints potentially could be used for radiological risk assessment? and 3) What inference strategies and associated methods would be most appropriate to assess the effects of radionuclides on ecosystem structure and function? The consensus of the participants was that ecosystem science can and should support radiological risk assessment through the incorporation of quantitative metrics that reflect ecosystem functions which are sensitive to radiological contaminants. The participants also agreed that many such endpoints exit or are thought to exit and while many are used in ecological risk assessment currently, additional data need to be collected that link the causal mechanisms of radiological exposure to these endpoints. Finally, the participants agreed that radiological risk assessments must be designed and informed by rigorous statistical frameworks capable of revealing the causal inference tying radiological exposure to the endpoints selected for measurement.
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Leaphart JC, Korotasz AM, Bryan AL, Beasley JC. Environmental fate of radiocesium in biota inhabiting a contaminated ecosystem on the U.S. Department of Energy's Savannah River Site. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2020; 222:106321. [PMID: 32892897 DOI: 10.1016/j.jenvrad.2020.106321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 05/25/2020] [Accepted: 05/27/2020] [Indexed: 06/11/2023]
Abstract
Although biomagnification of radiocesium (137Cs) has been reported in food webs, most previous research has been limited to select trophic linkages. Few studies have included a comprehensive survey of fauna associated with aquatic, semi-aquatic, and terrestrial habitats within a single study framework. The objectives of this study were to advance our understanding of the dynamics of 137Cs accumulation within food webs by quantifying 137Cs activity across a wide range of biota found within a contaminated canal, as well as test the hypothesis that life-stage and body size influence 137Cs bioaccumulation in select herpetofauna. With extensive sampling across multiple taxa collected from a contaminated canal system and associated floodplain on the Savannah River Site, we assessed 137Cs activity and stable nitrogen isotopes for both aquatic organisms that were restricted to the contaminated effluent canal, and semi-aquatic organisms able to move freely between the contaminated canal and the adjacent uncontaminated terrestrial habitat. We found 137Cs activity to be highly variable among species, with evidence for and against biomagnification in semi-aquatic and aquatic organisms, respectively. Furthermore, 137Cs activity decreased with life stage and body size in bullfrogs (Lithobates catesbeianus), despite post-metamorphic bullfrogs having a more carnivorous diet compared to tadpoles, while cottonmouths (Agkistrodon piscivorus) retained similar 137Cs activity regardless of their age and size. Although evidence of biomagnification has been observed in some contaminated systems, results of our study suggest the extent to which 137Cs biomagnifies within food webs is context-dependent and likely influenced by a suite of biotic and abiotic factors. Further, our data indicate sampling of a broad suite of species and environmental attributes are needed to elucidate the fate and dynamics of anthropogenic pollutants within contaminated ecosystems.
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Gerke HC, Hinton TG, Takase T, Anderson D, Nanba K, Beasley JC. Radiocesium concentrations and GPS-coupled dosimetry in Fukushima snakes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 734:139389. [PMID: 32464388 DOI: 10.1016/j.scitotenv.2020.139389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 05/10/2020] [Accepted: 05/10/2020] [Indexed: 06/11/2023]
Abstract
One of the largest releases of radioactive contamination in history occurred at Japan's Fukushima Daiichi Nuclear Power Plant (FDNPP). Although the accident happened in 2011, questions still persist regarding its ecological impacts. For example, relatively little is known about radiocesium accumulation in snakes, despite their high trophic status, limited home range sizes, and close association with soil where many radionuclides accumulate. This study presents one of the most comprehensive radioecological studies of snakes published to date using a combination of whole-body radiocesium analyses, GPS transmitters, and optically stimulated luminescence (OSL) dosimeters. The objectives were to: 1) quantify whole-body radiocesium activity concentrations and internal dose rates among several common species of snakes within and around the Fukushima Exclusion Zone (FEZ), 2) determine effects of species, sex, and body size on radiocesium activity concentrations, 3) measure external dose rates using GPS-coupled dosimeters deployed on free-ranging snakes, 4) compare field-derived empirical dose rates to those generated by computer simulation software (i.e., the ERICA tool), and 5) determine if incorporating snake behavior into computer models improve simulated estimates of external dose. Whole-body radiocesium levels for snakes were highly variable among individuals (16 to 25,000 Bq/kg, FW), but were influenced more by levels of local contamination than species, sex, or size. Doses recorded by OSL dosimeters on snakes, as well as modeling in ERICA, suggest that individual movements and behavior have a substantial influence on dose rates to snakes. However, dose estimates produced with ERICA were comparable to dose received by tracked snakes. The average external plus internal dose rate for snakes captured in the FEZ was 3.6-3.9 μGy/h, with external dose contributing 80% to the total. Further research regarding reptile-specific benchmark dose rates would improve risk assessment for reptiles in radiologically contaminated areas.
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Thomas JC, Oladeinde A, Kieran TJ, Finger JW, Bayona‐Vásquez NJ, Cartee JC, Beasley JC, Seaman JC, McArthur JV, Rhodes OE, Glenn TC. Co-occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site. Microb Biotechnol 2020; 13:1179-1200. [PMID: 32363769 PMCID: PMC7264878 DOI: 10.1111/1751-7915.13578] [Citation(s) in RCA: 67] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 03/31/2020] [Accepted: 04/01/2020] [Indexed: 01/20/2023] Open
Abstract
Contaminants such as heavy metals may contribute to the dissemination of antimicrobial resistance (AMR) by enriching resistance gene determinants via co-selection mechanisms. In the present study, a survey was performed on soils collected from four areas at the Savannah River Site (SRS), South Carolina, USA, with varying contaminant profiles: relatively pristine (Upper Three Runs), heavy metals (Ash Basins), radionuclides (Pond B) and heavy metal and radionuclides (Tim's Branch). Using 16S rRNA gene amplicon sequencing, we explored the structure and diversity of soil bacterial communities. Sites with legacies of metal and/or radionuclide contamination displayed significantly lower bacterial diversity compared to the reference site. Metagenomic analysis indicated that multidrug and vancomycin antibiotic resistance genes (ARGs) and metal resistance genes (MRGs) including those associated with copper, arsenic, iron, nickel and zinc were prominent in all soils including the reference site. However, significant differences were found in the relative abundance and diversity of certain ARGs and MRGs in soils with metal/radionuclide contaminated soils compared to the reference site. Co-occurrence patterns revealed significant ARG/MRG subtypes in predominant soil taxa including Acidobacteriaceae, Bradyrhizobium, Mycobacterium, Streptomyces, Verrumicrobium, Actinomadura and Solirubacterales. Overall, the study emphasizes the potential risk of human activities on the dissemination of AMR in the environment.
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Leaphart JC, Oldenkamp RE, Bryan AL, Kennamer RA, Beasley JC. Patterns of Trace Element Accumulation in Waterfowl Restricted to Impoundments Holding Coal Combustion Waste. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2020; 39:1052-1059. [PMID: 32096287 DOI: 10.1002/etc.4697] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 11/26/2019] [Accepted: 02/20/2020] [Indexed: 06/10/2023]
Abstract
Waterfowl are often exposed to and readily accumulate anthropogenic contaminants when foraging in polluted environments. Settling impoundments containing coal combustion waste (CCW) enriched in trace elements such as arsenic (As), selenium (Se), and mercury (Hg) are often used by free-ranging migratory and resident waterfowl and represent potential sources for contaminant uptake. To assess accumulation of CCW contaminants, we experimentally restricted waterfowl to a CCW-contaminated impoundment and quantified trace element burdens in blood, muscle, and liver tissues over known periods of exposure (between 3 and 92 d). From these data we developed models 1) to predict elemental bioaccumulation with increased exposure time, and 2) to predict muscle/liver burdens based on concentrations in blood as a nondestructive sampling method. Although Hg and As did not bioaccumulate in our waterfowl, we observed an increase in Se concentrations in muscle, liver, and blood tissues over the duration of our experiment. Furthermore, we found that blood may be used as an effective nondestructive sampling alternative to predict muscle and liver tissue concentrations in birds contaminated with Se and As through dietary exposure. These data provide unique insights into accumulation rates of contaminants for waterfowl utilizing habitats contaminated with CCW and demonstrate the efficacy of nonlethal sampling of waterfowl to quantify contaminant exposure. Environ Toxicol Chem 2020;39:1052-1059. © 2020 SETAC.
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Silva AE, Barnes BF, Coyle DR, Abernethy EF, Turner KL, Rhodes OE, Beasley JC, Gandhi KJK. Effects of industrial disturbances on biodiversity of carrion-associated beetles. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 709:135158. [PMID: 31905577 DOI: 10.1016/j.scitotenv.2019.135158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Revised: 10/21/2019] [Accepted: 10/22/2019] [Indexed: 06/10/2023]
Abstract
Energy production systems such as nuclear reactors and coal-burning power plants produce a multitude of waste contaminants including radionuclides, trace elements, and heavy metals. Among invertebrates, much of the effort to understand the impact of these contaminants has focused in aquatic environments, while relatively less attention has been on terrestrial communities. We investigated the effects of trace element and radionuclide contamination on assemblages of beetles that are drawn to vertebrate carrion. Samples were collected from riparian sites at the Savannah River Site in South Carolina to compare trap catches (i.e., measure of relative abundance) of beetles and species diversity along a habitat gradient (0-300 m) away from an aquatic habitat and between uncontaminated and contaminated sites. We collected 17,800 carrion-associated beetles representing 112 species in nine families, which were classified as either scavenger or predatory beetles. Beetle catches and species diversity were generally higher at contaminated than uncontaminated sites. These trends were likely driven by scavenger species, which showed similar patterns between sites, whereas patterns of catches and species diversity were variable between sites for predatory beetles. Species compositions of contaminated and uncontaminated sites were generally distinct, however habitat edges appeared to substantially affect beetle assemblages. Overall, our study suggests carrion beetle assemblages are sensitive to edge effects and may exhibit variable responses to the presence of anthropogenic contaminants or disturbances associated with energy production systems. Such results reflect the inherent variability among individual beetle species, populations, and communities to local environmental conditions, and underscores the need for multi-taxa approach in environmental impact assessments.
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