An AHP-based regional COVID-19 vulnerability model and its application in China

Since the COVID-19 outbreak, four cities-Wuhan, Beijing, Urumqi and Dalian-have experienced the process from outbreak to stabilization. According to the China Statistical Yearbook and China Center for Disease Control records, regional, pathological, medical and response attributes were selected as regional vulnerability factors of infectious diseases. Then the Analytic Hierarchy Process (AHP) method was used to build a regional vulnerability index model for the infectious disease. The influence of the COVID-19 outbreak at a certain place was assessed computationally in terms of the number of days of epidemic duration and cumulative number of infections, and then fitted to the city data. The resulting correlation coefficient was 0.999952. The range of the regional vulnerability index for COVID-19 virus was from 0.0513 to 0.9379. The vulnerability indexes of Wuhan, Urumqi, Beijing and Dalian were 0.8733, 0.1951, 0.1566 and 0.1119, respectively. The lack of understanding of the virus became the biggest breakthrough point for the rapid spread of the virus in Wuhan. Due to inadequate prevention and control measures, the city of Urumqi was unable to trace the source of infection and close contacts, resulting in a relatively large impact. Beijing has both high population density and migration rate, which imply that the disease outbreak in this city had a great impact. Dalian has perfect prevention and good regional attributes. In addition, the regional vulnerability index model was used to analyze other Chinese cities. Accordingly, the regional vulnerability index and the prevention and control suggestions for them were discussed.

Supplementary Information

The online version contains supplementary material available at 10.1007/s40808-021-01244-y.

Applications of a picture fuzzy correlation coefficient in pattern analysis and decision-making

Picture fuzzy set is an efficient tool for dealing with uncertainty and vagueness, particularly in situations that require assimilation of more dimensions of linguistic assessment such as human voting, feature selection, etc. The correlation coefficient of picture fuzzy sets is a tool to determine the association of two picture fuzzy sets. It has several applications in various disciplines like science, engineering, and management. The prominent applications include decision-making, pattern recognition, clustering analysis, medical diagnosis, etc. In this paper, we introduce a new correlation coefficient for picture fuzzy sets with the justification of its advantages. This correlation coefficient is better than the existing correlation coefficients and other such measures in the picture fuzzy theory because it considers the picture fuzzy set as a whole and also expresses the nature (positive or negative) as well as the extent of association between two PFSs. By performing some comparative analysis based on the computation of correlation degree and linguistic hedges, we establish the effectiveness of the suggested correlation measure over some available correlation measures in a picture fuzzy environment. Further, in the context of pattern recognition, we examine the performance of the proposed correlation measure over some existing picture fuzzy correlation measures. Finally, we apply the suggested picture fuzzy correlation coefficient to a decision-making problem involving the selection of an appropriate COVID-19 mask.

Association between health literacy and mortality: a systematic review and meta-analysis

BACKGROUND

To identify the relationship between health literacy (HL) and mortality based on a systematic review and meta-analysis.

METHODS

Literature published from database inception until July 2020 was searched using the PubMed and Web of Science databases, using relevant keywords and clear inclusion and exclusion criteria. The search was limited to English language articles. Two reviewers independently selected studies and extracted data. Pooled correlation coefficients and their 95% confidence intervals (CI) between HL and mortality were estimated using Stata 15.0 software. Potential sources of heterogeneity were explored using subgroup analysis, sensitivity analysis, and meta-regression. Quality of the original studies that were included in the meta-analysis was evaluated using the Newcastle-Ottawa Scale. A funnel plot and Egger's test were used to determine whether significant publication bias was present.

RESULTS

Overall, 19 articles were included, reporting on a total of 41,149 subjects. Eleven were prospective cohort studies, and all articles were considered "good" quality. The most used screening instruments were the short Test of Functional Health Literacy (S-TOFHLA) in Adults and the Brief Health Literacy Screen (BHLS). Among 39,423 subjects (two articles did not report the number of patients with low HL), approximately 9202 (23%) had inadequate or marginal HL. The correlation coefficient between HL and mortality was 1.25 (95%CI = 0.25-0.44).

CONCLUSION

Lower HL was associated with an increased risk of death. This finding should be considered carefully and confirmed by further research.

Construction of flood loss function for cities lacking disaster data based on three-dimensional (object-function-array) data processing

Reliable loss estimation is crucial for flood risk management. As the current standard form of flood loss assessment, it is difficult to fit the Flood Inundated Depth-Loss Rate Function (FILF) due to the lack of historical data in most inland arid and semi-arid plain cities. To address the current trend of increasing flood risk, it has become increasingly important to develop a scientific and reasonable loss assessment function or model for these cities. Therefore, the flood loss rate data of several cities were transferred through amplified characteristic indices to form a loss rate transfer vector of cities lacking disaster data based on the analogy principle. Three-dimensional data processing rules were then set, including the priority sequence of object dimensional variance and the greatest correlation coefficient (CC) of the joint dimension of function and array. Finally, a FILF of cities lacking disaster data was constructed after three-level optimization. The FILF of eight property types was calculated taking Zhengzhou City, China, as the study area. The optimal function and array dimensions were F₆ (Biquadratic) and D₄-D₆, respectively. All CCs exceeded 0.9935, with an average of 0.9971. The joint fitting results also showed that the function dimension was more sensitive to the FILF than the array dimension. The simulated total flood loss of the Jinshui District in 20 years was 2.46 billion yuan, and there was clear spatial disparity in economic loss. This study is expected to resolve the problem of the absence of a loss function in cities or regions lacking data to support urban flood risk management.

Solar radiation prediction using boosted decision tree regression model: A case study in Malaysia

Reliable and accurate prediction model capturing the changes in solar radiation is essential in the power generation and renewable carbon-free energy industry. Malaysia has immense potential to develop such an industry due to its location in the equatorial zone and its climatic characteristics with high solar energy resources. However, solar energy accounts for only 2-4.6% of total energy utilization. Recently, in developed countries, various prediction models based on artificial intelligence (AI) techniques have been applied to predict solar radiation. In this study, one of the most recent AI algorithms, namely, boosted decision tree regression (BDTR) model, was applied to predict the changes in solar radiation based on collected data in Malaysia. The proposed model then compared with other conventional regression algorithms, such as linear regression and neural network. Two different normalization techniques (Gaussian normalizer binning normalizer), splitting size, and different input parameters were investigated to enhance the accuracy of the models. Sensitivity analysis and uncertainty analysis were introduced to validate the accuracy of the proposed model. The results revealed that BDTR outperformed other algorithms with a high level of accuracy. The funding of this study could be used as a reliable tool by engineers to improve the renewable energy sector in Malaysia and provide alternative sustainable energy resources.

Changes in the concentration of air pollutants before and after the COVID-19 blockade period and their correlation with vegetation coverage

In order to control the spread of COVID-19, China had implemented strict lockdown measures. The closure of cities had had a huge impact on human production and consumption activities, which had greatly reduced population mobility. This article used air pollutant data from 341 cities in mainland China and divided these cities into seven major regions based on geographic conditions and climatic environment. The impact of urban blockade on air quality during COVID-19 was studied from the perspectives of time, space, and season. In addition, this article used Normalized Difference Vegetation Index (NDVI) to systematically analyze the characteristics of air pollution in the country and used the Pearson correlation coefficient to explore the relationship between NDVI and the air pollutant concentrations during the COVID-19 period. Then, linear regression was used to find the quantitative relationship between NDVI and AQI, and the fitting effect of the model was found to be significant through t test. Finally, some countermeasures were proposed based on the analysis results, and suggestions were provided for improving air quality. This paper has drawn the following conclusions: (1) the concentration of pollutants varied greatly in different regions, and the causes of their pollution sources were also different. The region with the largest decline in AQI was the Northeast China (60.01%), while the AQI in the southwest China had the smallest change range, and its value had increased by 1.72%. In addition, after the implementation of the city blockade, the concentration of NO2 in different regions dropped the most, but the increase in O3 was more obvious. (2) Higher vegetation coverage would have a beneficial impact on the atmospheric environment. Areas with higher NDVI values have relatively low AQI. There is a negative correlation between NDVI and AQI, and an average increase of 0.1 in NDVI will reduce AQI by 3.75 (95% confidence interval). In the case of less human intervention, the higher the vegetation coverage, the lower the local pollutant concentration will be. Therefore, the degree of vegetation coverage would have a direct or indirect impact on air pollution.

Impact of the inversion and air pollution on the number of patients with Covid-19 in the metropolitan city of Tehran

There is a downward curve between increasing inversion altitude and the number of coronavirus patients during all periods. As temperature inversion altitude increases, the pollutants are dispersed in a greater thickness of the atmosphere and the concentration of the pollutants decreases on the earth's surface. At the same time, the number of patients with Covid-19 reduces. Although investigation of the effect of severity of pollutants on the number of coronavirus patients showed poor significance level during the periods, a decreasing and increasing relationship was shown. in 1- and 9-14-day periods, the correlation coefficient was negative. As a result, the effect of the severity of pollutants and Covid-19 is not observed on 1- and9-14-day periods. Conversely, during2-8-day periods, a positive correlation coefficient was observed. Therefore, the time between infection with the virus and the onset of symptoms of this disease is between 2 and 8 days, in which the 3-day period showed the highest correlation. Considering the relationship between inversion altitude, the severity of pollutants and the number of patients during 2-5-day periods, it can be concluded that in the metropolitan city of Tehran, the maximum infection of this virus and the onset of symptoms is between 2 and 5 days.

Guidelines for correlation coefficient threshold settings in metabolite correlation networks exemplified on a potato association panel

BACKGROUND

Correlation network analysis has become an integral tool to study metabolite datasets. Networks are constructed by omitting correlations between metabolites based on two thresholds-namely the r and the associated p-values. While p-value threshold settings follow the rules of multiple hypotheses testing correction, guidelines for r-value threshold settings have not been defined.

RESULTS

Here, we introduce a method that allows determining the r-value threshold based on an iterative approach, where different networks are constructed and their network topology is monitored. Once the network topology changes significantly, the threshold is set to the corresponding correlation coefficient value. The approach was exemplified on: (i) a metabolite and morphological trait dataset from a potato association panel, which was grown under normal irrigation and water recovery conditions; and validated (ii) on a metabolite dataset of hearts of fed and fasted mice. For the potato normal irrigation correlation network a threshold of Pearson's |r|≥ 0.23 was suggested, while for the water recovery correlation network a threshold of Pearson's |r|≥ 0.41 was estimated. For both mice networks the threshold was calculated with Pearson's |r|≥ 0.84.

CONCLUSIONS

Our analysis corrected the previously stated Pearson's correlation coefficient threshold from 0.4 to 0.41 in the water recovery network and from 0.4 to 0.23 for the normal irrigation network. Furthermore, the proposed method suggested a correlation threshold of 0.84 for both mice networks rather than a threshold of 0.7 as applied earlier. We demonstrate that the proposed approach is a valuable tool for constructing biological meaningful networks.

Mediative fuzzy logic mathematical model: A contradictory management prediction in COVID-19 pandemic

This paper presents a model based on mediative fuzzy logic in this COVID-19 pandemic. COVID-19 (novel coronavirus respiratory disease) has become a pandemic now and the whole world has been affected by this disease. Different methodologies and many prediction techniques based on various models have been developed so far. In the present article, we have developed a mediative fuzzy correlation technique based on the parameters for COVID-19 patients from different parts of India. The proposed mediative fuzzy correlation technique provides the relation between the increments of COVID-19 positive patients in terms of the passage of increment with respect to time. The peaks of infected cases in connection with the other condition are estimated from the available data. The mediative fuzzy logic mathematical model can be utilized to find a good fit or a contradictory model for any pandemic model. The proposed approach to the prediction in COVID-19 based on mediative fuzzy logic has produced promising results for the continuous contradictory prediction in India.

Predicting the number of article citations in the field of attention-deficit/hyperactivity disorder (ADHD) with the 100 top-cited articles since 2014: a bibliometric analysis

BACKGROUND

Attention-deficit/hyperactivity disorder (ADHD) is a common neurodevelopmental disorder in children or early adolescents with an estimated worldwide prevalence of 7.2%. Numerous articles related to ADHD have been published in the literature. However, which articles had ultimate influence is still unknown, and what factors affect the number of article citations remains unclear as well. This bibliometric analysis (1) visualizes the prominent entities with 1 picture using the top 100 most-cited articles, and (2) investigates whether medical subject headings (i.e., MeSH terms) can be used in predicting article citations.

METHODS

By searching the PubMed Central^® (PMC) database, the top 100 most-cited abstracts relevant to ADHD since 2014 were downloaded. Citation rank analysis was performed to compare the dominant roles of article types and topic categories using the pyramid plot. Social network analysis (SNA) was performed to highlight prominent entities for providing a quick look at the study result. The authors examined the MeSH prediction effect on article citations using its correlation coefficients (CC).

RESULTS

The most frequent article types and topic categories were research support by institutes (56%) and epidemiology (28%). The most productive countries were the United States (42%), followed by the United Kingdom (13%), Germany (9%), and the Netherlands (9%). Most articles were published in the Journal of the American Academy of Child and Adolescent Psychiatry (15%) and JAMA Psychiatry (9%). MeSH terms were evident in prediction power on the number of article citations (correlation coefficient = 0.39; t = 4.1; n = 94; 6 articles were excluded because they do not have MeSH terms).

CONCLUSIONS

The breakthrough was made by developing 1 dashboard to display 100 top-cited articles on ADHD. MeSH terms can be used in predicting article citations on ADHD. These visualizations of the top 100 most-cited articles could be applied to future academic pursuits and other academic disciplines.

Inference of Gene Coexpression Networks from Bulk-Based RNA-Sequencing Data

Gene coexpression networks (GCNs) are useful tools for inferring gene functions and understanding biological processes when properly constructed. Traditional microarray analysis is being more frequently replaced by bulk-based RNA-sequencing as a method for quantifying gene expression. This new technology requires improved statistical methods for generating GCNs. This chapter explores several popular methods for constructing GCNs using bulk-based RNA-Seq data, such as distribution-based methods and normalization techniques, implemented using the statistical programming language R.

Examining the correlation between the weather conditions and COVID-19 pandemic in India: A mathematical evidence

In this article, for the analysis of Covid-19 progression in India, we present new insights to formulate a data-driven epidemic model and approximation algorithm using the real data on infection, recovery and death cases with respect to weather in the view of mathematical variables.

Glycoconjugate vaccine batch consistency assessed by objective comparison of circular dichroism spectra

Circular dichroism (CD) spectra of biopharmaceutical protein, or protein conjugate, products contain information about their secondary and tertiary structures, which can answer to increasing regulatory interest in demonstrating consistent higher order structures of production batches. Widespread routine use of CD in a regulatory environment requires objective, statistically based, and validated methods to analyse and compare spectra against product specifications. Correlation approaches to compare spectra, developed and tested on monoclonal antibodies, are here used to assess the consistency of Hib PRP-CRM197 glycoconjugate immunogen batches, by analysis of historical data sets. Deconvolution of spectra into Gaussian peaks was used to model the spectrum and allow a more detailed description of spectral differences. Two groups of spectra [and hence samples] were distinguished. The analyses are discussed in the context of spectral comparison approaches, inter-laboratory studies, potential regulatory use and sources of uncertainty between spectra. Data analysis methods implemented here can also support stability and formulation studies.

Some physicochemical parameters and 226Ra concentration in groundwater samples of North Guilan, Iran

The ²²⁶Ra concentration and some physicochemical parameters have been measured in thermal spring waters used for medical therapy and drinking purposes in the Astara basin of North Guilan, Iran. The radon emanation method was performed using the AB-5 photomultiplier tube to measure the ²²⁶Ra concentration in water samples. Also, the physicochemical parameters of the water were measured in situ using a portable multimeter-VWR multi. The average concentrations of ²²⁶Ra were ranged between 3.4 ± 0.06 to 38.2 ± 0.08 mBq l^-1. For all samples, the ²²⁶Ra concentration values range is lower than the maximum admissible value recommended by the WHO report. The relation between the physicochemical parameters and ²²⁶Ra activity concentration of groundwater was assessed. The results indicate a significant correlation coefficient between ²²⁶Ra concentration and T, as well as acidity pH. Anomalously high ²²⁶Ra concentrations in groundwater are preferentially found in high temperate and electric conductivity along with the acidic environment.

Prediction of new active cases of coronavirus disease (COVID-19) pandemic using multiple linear regression model

INTRODUCTION AND AIMS

The COVID-19 pandemic originated from the city of Wuhan of China has highly affected the health, socio-economic and financial matters of the different countries of the world. India is one of the countries which is affected by the disease and thousands of people on daily basis are getting infected. In this paper, an analysis of daily statistics of people affected by the disease are taken into account to predict the next days trend in the active cases in Odisha as well as India.

MATERIAL AND METHODS

A valid global data set is collected from the WHO daily statistics and correlation among the total confirmed, active, deceased, positive cases are stated in this paper. Regression model such as Linear and Multiple Linear Regression techniques are applied to the data set to visualize the trend of the affected cases.

RESULTS

Here a comparison of Linear Regression and Multiple Linear Regression model is performed where the score of the model R²_{tends to be 0.99 and 1.0 which indicates a strong prediction model to forecast the next coming days active cases. Using the Multiple Linear Regression model as on July month, the forecast value of 52,290 active cases are predicted towards the next month of 15th August in India and 9,358 active cases in Odisha if situation continues like this way.} CONCLUSION: These models acquired remarkable accuracy in COVID-19 recognition. A strong correlation factor determines the relationship among the dependent (active) with the independent variables (positive, deceased, recovered).

Phenotyping for drought resistance in bread wheat using physiological and biochemical traits

Drought is one of the most prominent limiting factors that negatively affect crop productivity by manipulating its physiological pathway. One hundred twenty diverse bread wheat genotypes were used in a pot experiment to explore the relationship among their fifteen physio-biochemical traits (PBT) by using multivariate analysis, heatmapping and stress tolerance index (STI) for grain yield as a marker trait to identify high yielding genotype with maximum stress tolerance capability. Increased proline and sugar accumulation were observed from control to moisture deficient environments by 159% and 122%, respectively. Moreover, leaf membrane stability index (LMSI), leaf relative water content (LRWC), relative dry weight (RDW), chlorophyll content, leaf surface area (LSA), Leaf succulence (LS), canopy temperature depression (CTD), relative excised leaf water loss (RELWL) and leaf osmotic potential (LOP) showed significantly decreasing trend in drought stress treatment as compared to well-watered plants by -21%, -21%, -34%, -22%, -38%, -37%, -46%, -18% and -35% respectively. Additionally, principal component analysis and genotype by trait biplot analysis showed that initial 7 principal components (PC1 to PC7) represented 77.27% and 79.02% of total cumulative variation under control and drought stress respectively. Genotypic-Phenotypic correlation revealed that most of the attributes were higher in case of genotypic correlation component (rg) as compared to the phenotypic correlation component (rp) indicating more genetic association between traits. The darker and lighter colour scale produced by heatmap exhibited contrasting nature of genotypes, as positive side with higher values represented drought resistance while values on the negative side with lower values showed susceptible performance of genotypes. Our results concluded that the studied PBT associated with STI for grain yield are the main factors which may contribute in improved productivity of wheat crop and if these traits show appropriate performance under stress condition the crop will show the more productive returns under changing climate.

BTrackS limits of stability test is a reliable assessment of volitional dynamic postural control

BACKGROUND

Unconstrained limits of stability assessment reveals aspects of volitional postural sway control that are inaccessible by other means. Prior versions of this assessment include instructions to sway towards predefined targets, and may not capture the full capability of the individual.

RESEARCH QUESTION

This study sought to establish the test-retest reliability of a novel limits of stability protocol.

METHODS

Volitional sway area was determined during unconstrained trials, where participants were instructed to explore their ability to sway towards the perimeter of their base of support. Visual feedback was provided via computer monitor. Forty healthy young adults (mean age = 20.2 ± 1.3, 15 males, 25 females) participated in this study. Trials were collected in three sessions, repeated at the same time of the same day, with one week between. Reliability was assessed using IntraClass Correlation Coefficients (ICC), considering the total area of sway as well as quadrant level area.

RESULTS

Reliability was moderate between the first and second session (0.583), and much higher 0.921) between the second and third session. The quadrant level reliability was poor to excellent (0.183-0.791), with similar trends between the three sessions.

SIGNIFICANCE

Ultimately, these results indicate that the novel limits of stability test is reliable. However, it is recommended that a practice trial be conducted prior to baseline establishment.

The role of climate in the trend and variability of Ethiopia's cereal crop yields

Food security has been and will continue to be a major challenge in Ethiopia. The country's smallholder, rainfed agriculture renders its food production system extremely vulnerable to climate variability and extremes. In this study, we investigate the impact of past climate variability and change on the yields of five major cereal crops in Ethiopia-barley, maize, millet, sorghum, and wheat-during the period 1979-2014 using the Decision Support System for Agrotechnology Transfer (DSSAT) crop model. The model is calibrated at both the site and agroecological-zone scales. At the sites studied, the model results suggest that climate in the past four decades may have contributed to an increasing trend in maize yield, a decreasing trend in wheat yield, and no clear trend in the yields of barley and millet; cereal crop yield is positively correlated with growing season solar radiation and temperature, but negatively correlated with growing season precipitation. For modeled cereal crops across the nation during the study period, yield in western Ethiopia is positively correlated with solar radiation and day time temperature; in the eastern and southeastern Ethiopia where water is a limiting factor for growth, yield is positively correlated with precipitation but negatively correlated with solar radiation and both day time and night time temperature. The national average of simulated yields of most crops (except maize) showed an overall decreasing (although not statistically significant) trend induced by past climate variability and changes. Over a large portion of the highly productive areas where there is a negative correlation between yield and temperature, yield is simulated to have significantly decreased over the past four decades, an indication of adverse climate impact in the past and potential food security concern in the future.

Fast and effective removal of contamination from scalp electrical recordings

OBJECTIVE

To present a new, automated and fast artefact-removal approach which significantly reduces the effect of contamination in scalp electrical recordings.

METHOD

We used spectral and temporal characteristics of different sources recorded during a typical scalp electrical recording in order to improve a fast and effective artefact removal approach. Our experiments show that correlation coefficient and spectral gradient of brain components differ from artefactual components. We trained two binary support vector machine classifiers such that one separates brain components from muscle components, and the other separates brain components from mains power and environmental components. We compared the performance of the proposed approach with seven currently used alternatives on three datasets, measuring mains power artefact reduction, muscle artefact reduction and retention of brain neurophysiological responses.

RESULTS

The proposed approach significantly reduces the main power and muscle contamination from scalp electrical recording without affecting brain neurophysiological responses. None of the competitors outperformed the new approach.

CONCLUSIONS

The proposed approach is the best choice for artefact reduction of scalp electrical recordings. Further improvements are possible with improved component analysis algorithms.

SIGNIFICANCE

This paper provides a definitive answer to an important question: Which artefact removal algorithm should be used on scalp electrical recordings?

Cryo_fit: Democratization of flexible fitting for cryo-EM

Cryo-electron microscopy (cryo-EM) is becoming a method of choice for describing native conformations of biomolecular complexes at high resolution. The rapid growth of cryo-EM in recent years has created a high demand for automated solutions, both in hardware and software. Flexible fitting of atomic models to three-dimensional (3D) cryo-EM reconstructions by molecular dynamics (MD) simulation is a popular technique but often requires technical expertise in computer simulation. This work introduces cryo_fit, a package for the automatic flexible fitting of atomic models in cryo-EM maps using MD simulation. The package is integrated with the Phenix software suite. The module was designed to automate the multiple steps of MD simulation in a reproducible manner, as well as facilitate refinement and validation through Phenix. Through the use of cryo_fit, scientists with little experience in MD simulation can produce high quality atomic models automatically and better exploit the potential of cryo-EM.

Investigating the relationships among lung function variables in chronic obstructive pulmonary disease in men

Background

In patients with chronic obstructive pulmonary disease (COPD), the independent contributions of individual lung function variables to outcomes may be lower when they are modelled together if they are collinear. In addition, lung volume measurements may not be necessary after spirometry data have been obtained. However, these hypotheses depend on whether forced vital capacity (FVC) can predict total lung capacity (TLC). Moreover, the definitions of hyperinflation and air trapping according to lung function variables overlap and need be clarified. Therefore, the aim of this study was to evaluate the relationships among various lung function parameters to elucidate these issues.

Methods

Demographic data and 26 parameters of full lung function were measured in 94 men with COPD and analyzed using factor and correlation analyses.

Results

Factor analysis revealed five latent factors. Inspiratory capacity (IC)/TLC and residual volume (RV)/TLC were most strongly correlated with all other lung volumes. IC/TLC, RV/TLC, and functional residual capacity (FRC)/TLC were collinear and were potential markers of air trapping, whereas TLC%, FRC%, and RV% were collinear and were potential markers of hyperinflation. RV/TLC >0.4 (or IC/TLC <0.4) was comparable with the ratio of forced expiratory volume in one second (FEV₁) and FVC <0.7. FVC% and FEV₁% were poorly correlated with TLC%. The correlation study showed that TLC%, RV/TLC, and FEV₁% could be used to represent individual latent factors for hyperinflation, air trapping, inspiration, expiration, and obstruction. Combined with diffusion capacity%, these four factors could be used to represent comprehensive lung function.

Conclusions

This study identified collinear relationships among individual lung function variables and thus selecting variables with close relationships for correlation studies should be performed with caution. This study also differentiated variables for air trapping and lung hyperinflation. Lung volume measurements are still required even when spirometry data are available. Four out of 26 lung function variables from individual latent factors could be used to concisely represent lung function.

Using Google Maps to display the pattern of coauthor collaborations on the topic of schizophrenia: A systematic review between 1937 and 2017

Schizophrenia is a severe mental disorder affecting more than 21 million people worldwide. Scientific collaborations are required to research schizophrenia. However, there have been limited publications to date investigating scientific collaborations in schizophrenia research or reporting individual researchers' achievements(IRA) for authors. This study aimed to investigate the pattern of coauthor collaborations in schizophrenia research. We conducted a bibliometric study of international scientific publications on schizophrenia. About 57,964 abstracts were identified and downloaded from MEDLINE. All were examined using social network analysis (SNA) on February 20, 2018. The clusters of author nationalities, the authors, and the medical subject headings (MESH) terms were presented on Google Maps. A total of 36,934 articles met the inclusion criteria. The mean number of authors per article increased from 4.5 in 2008 to 6.4 in 2017. The proportion of published articles decreased in North America from 46.7% in 2008, to 32.3% in 2017. In contrast, the proportion of published articles in Asia increased from 14.5% in 1998 to 23.9% in 2017. Among the countries generating schizophrenia research the most prominent is China (corr. = 0.98), followed by India (corr. = 0.94), and France (corr. = 0.93). The representative of the biggest cluster is the author Michael F Green from the United States. The top three MESH terms are physiopathology, schizophrenic psychology, and complications. The scientific interest in schizophrenia remains significant. The application of bibliometric indicators of production is evident in the growth of scientific literature on the topic of schizophrenia.

Inference of Gene Co-expression Networks from Single-Cell RNA-Sequencing Data

Single-cell RNA-Sequencing is a pioneering extension of bulk-based RNA-Sequencing technology. The "guilt-by-association" heuristic has led to the use of gene co-expression networks to identify genes that are believed to be associated with a common cellular function. Many methods that were developed for bulk-based RNA-Sequencing data can continue to be applied to single-cell data, and several of the most widely used methods are explored. Several methods for leveraging the novel time information contained in single-cell data when constructing gene co-expression networks, which allows for the incorporation of directed associations, are also discussed.

Rapid identification of soil organic matter level via visible and near-infrared spectroscopy: Effects of two-dimensional correlation coefficient and extreme learning machine

Accurate estimation of soil organic matter (SOM) is essential in understanding the spatial distribution of SOM to identify areas that need fertilization and the required grade of those fertilizers. Visible and near-infrared spectroscopy is a promising alternative to time consuming and costly conventional soil assessment methods. However, this approach is highly dependent on selecting suitable preprocessing strategies and data mining techniques for regression analysis. In this study, 2D correlation coefficients, including ratio, difference, and normalized difference indices, were introduced to select sensitive spectral parameters. The performance of extreme learning machine (ELM) was evaluated via comparison with that of support vector machine (SVM) for SOM estimation. A total of 257 soil samples were collected from Hubei Province, Central China, with SOM contents and reflectance spectra measured in the laboratory. Five spectral pretreatments, except for the raw spectra, were applied. SVM and ELM models were calibrated on spectral parameters selected by one-dimensional and 2D correlation coefficients and subsequently applied to predict SOM. Results showed that 2D correlation coefficient can effectively highlight the detailed SOM information compared with that of one-dimensional correlation coefficient. The ELM models yielded superior predictability relative to SVM models in all eight established models. The most excellent estimation accuracy was obtained by 2D ratio index and ELM (TRI-ELM) method, with an independent validation R² and a ratio of performance to interquartile range of 0.83 and 3.49, respectively. The SOM fertility levels of predicted SOM showed that TRI-ELM method presented the largest similarity to laboratory-measured SOM levels, and misclassified samples were all concentrated within one error level. In summary, our study indicates that the TRI-ELM model is a rapid, inexpensive, and relatively accurate method for identifying SOM fertility level.

The relationship between health literacy and quality of life: a systematic review and meta-analysis

Background

Low health literacy often has an association with poor health outcomes such as low levels of self-efficacy, increased mortality, poor health status and reduced quality of life (QOL). The aim of the study was to quantitatively evaluate the relationship between health literacy (HL) and QOL based on a systematic review and meta-analysis.

Methods

EMBASE, PubMed, Web of Science, Elsevier, Cochrane Library, and Chinese electronic databases such as CNKI, and Wanfang were searched from 1970 until February 1, 2018. The pooled correlation coefficient (PCOR) and its 95% confidence interval (CI) between HL and QOL were estimated using R software. Potential sources of heterogeneity were explored using subgroup analysis, sensitivity analysis, and meta-regression.

Results

Twenty-three studies, with a total of 12,303 subjects,were included. The PCOR between HL and QOL was 0.35 (95%CI: 0.25–0.44). Considering different dimensions of HL, the PCOR between QOL and health knowledge, health behavior, health belief, and health skill were 0.36 (95% CI: 0.04–0.61), 0.36 (95%CI: 0.13–0.55), 0.39 (95%CI: 0.10–0.62), and 0.42 (95%CI: 0.03–0.69), respectively. The PCOR between HL and the two dimensions of QOL was lower than the total PCOR between HL and QOL. In subgroup analysis, the PCOR between HL and QOL was 0.46 (95%CI: 0.13, 0.69) among community residents, 0.45 (95%CI: 0.27, 0.61) in China, and 0.45 (95%CI: 0.24, 0.62) based on cohort studies. Sensitivity analyses showed that the stability of results had no significant after excluding the study (p < 0.001). Meta-regression showed that cohort study design, studies conducted in China, and publication before 2012 may be important influencing factors.

Conclusions

Health literacy was moderately correlated with quality of life, but this finding needs to be supported by more evidence.

Electronic supplementary material

The online version of this article (10.1186/s12955-018-1031-7) contains supplementary material, which is available to authorized users.