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Fu Y, Wei J, Yao S, Zhang L, Zhang M, Zhuang X, Zhao C, Li J, Pang B. Rapid qualitative and quantitative detection of Salmonella typhimurium using a single-step dual photometric/fluorometric assay. Mikrochim Acta 2022; 189:218. [PMID: 35546375 DOI: 10.1007/s00604-022-05312-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 04/18/2022] [Indexed: 10/18/2022]
Abstract
A dual-signal photometric/fluorometric assay was established for rapid, qualitative, and quantitative detection of Salmonella typhimurium (S. typhimurium). This method was composed of two parts: (1) a single-step photometric (SSC) assay containing gold nanoparticles (AuNPs), poly-diallyldimethylammonium chloride (PDDA), and S. typhimurium-specific aptamer, and (2) a fluorescence (FL) assay containing carboxyl-modified CdSe/ZnS quantum dots (QDs-COOH). Users just need to drop samples contaminated with S. typhimurium into SSC assay; the apparent color change from red to blue can be observed in a short time (20 min). A smartphone app was developed to read the semiquantitative result. By subsequently adding one drop of FL assay into the reaction mixture, the generated fluorescence intensity reflected the concentration of S. typhimurium. The naked eye limit of detection (LOD) and fluorescent LOD were 103 cfu/mL and 10 cfu/mL, respectively. This method exhibited good selectivity. The reliability and practicability were verified by testing contaminated food, drinking water, and pets' urine.
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da Fonseca Mendonça AC, Portilho MM, da Silva JC, Caetano AR, Lewis-Ximenez LL, Melo Villar L. Optimization of a real time PCR methodology for HCV RNA quantification in saliva samples. J Virol Methods 2022; 302:114470. [PMID: 35063589 DOI: 10.1016/j.jviromet.2022.114470] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 01/11/2022] [Accepted: 01/17/2022] [Indexed: 11/17/2022]
Abstract
Saliva may be an alternative biological specimen to expand HCV detection. This study aims to evaluate an in-house quantitative RT-PCR for HCV RNA quantification in saliva. A total of 80 individuals (56 anti-HCV/HCV RNA + and 24 negative controls) donated serum and saliva, that were tested using an in-house quantitative PCR for HCV RNA. The median viral load was 4.77 log10 copies/mL (1.04-7.0 log10 copies/mL) in serum and 2.31 log10 copies/mL (1.0-3.84 log10 copies/mL) in saliva. A sensitivity and specificity of 80 % was observed for HCV detection in saliva, which demonstrates the usefulness of in-house real-time PCR to quantify HCV RNA in saliva samples, which might increase the access of molecular diagnosis of HCV in laboratories that lack complex infrastructures for molecular testing and in individuals with poor venous access.
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Liu D, Zhang B, Zhu L, Zheng L, Li S, Tan X, Yu Y, Li H. A Simple and Rapid Light-Initiated Chemiluminescence Assay for Quantitation of Artemisia-Specific Immunoglobulin E. Int Arch Allergy Immunol 2021; 183:490-497. [PMID: 34915490 DOI: 10.1159/000520511] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 10/26/2021] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Light-initiated chemiluminescence assay (LICA) is a homogeneous assay that has been successfully used for the quantitation of food allergen-specific immunoglobulin E (sIgE), but not inhaled allergen-sIgE. Simultaneously, current assays used to detect allergen-sIgE are serum consuming and/or time consuming. Hence, we established a method for the quantitation of Artemisia-sIgE based on LICA and verified its performance according to the clinical guideline documents, laying a foundation for the quantitation of inhaled and food allergen-sIgE in parallel on LICA. METHODS The assay was established after optimizing the first incubation time and the dilutions of Artemisia-coated chemibeads, biotinylated goat anti-human IgE, and serum. In order to quantitate Artemisia-sIgE, the calibration curve was established with a high positive serum of known concentration. The assay performance was confirmed per the clinical guideline documents. In addition, the correlation between the results of LICA and capture enzyme-linked immunosorbent assay was evaluated. RESULTS The developed LICA's coefficients of variation of repeatability and intermediate precision were 3.20%, 2.14%, and 3.85% and 4.30%, 4.00%, and 4.40%, respectively. The limit of detection was 0.10 kUA/L, and the limit of quantitation was 0.11 kUA/L. The range of linearity was from 0.27 kUA/L to 97.53 kUA/L (r = 0.9968). The correlation coefficient (r) for the correlation analysis between results of LICA and capture ELISA was 0.9087. This assay was successfully applied in 64 human serum samples, showing good sensitivity (82.20%) and specificity (100%). CONCLUSION An Artemisia-sIgE quantitation assay based on LICA was successfully established. Its performance satisfied the clinical requirements and could be widely used in clinical laboratories.
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Wei Y, Khoza T, Yu Y, Wang L, Liu B, Wang J, Gan L, Hao F, Shao G, Feng Z, Xiong Q. Development of an indirect competitive enzyme linked immunosorbent assay for the quantitative detection of Mycoplasma hyopneumoniae during the vaccine production process. J Immunol Methods 2021; 500:113196. [PMID: 34838793 DOI: 10.1016/j.jim.2021.113196] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 11/19/2021] [Accepted: 11/23/2021] [Indexed: 01/09/2023]
Abstract
Inactivated Mycoplasma hyopneumoniae vaccine is used extensively to control M. hyopneumoniae infection worldwide. Quantification techniques are essential in the process of standardizing and validating vaccines. In this study, we developed and optimized an indirect competitive enzyme linked immunosorbent assay (ic-ELISA) for the rapid quantification of M. hyopneumoniae antigen during vaccine production. Briefly, whole M. hyopneumoniae antigen was coated onto microtiter plates, and a polyclonal antibody against M. hyopneumoniae recombinant elongation factor thermo unstable (EF-Tu) protein was prepared and added with the samples to be tested. The methods were optimized and showed significant reproducibility, with coefficients of variation of 4.01% and 6.14% for the intra-and inter-assays, respectively. Quantification of M. hyopneumoniae cultures at different growth stages using the ic-ELISA test showed a similar curve to that of the traditional color changing units (CCU) assay, with a delay in the time when the amount reached the peak and started to fall. In the inactivated vaccine production process, the cultures could be harvested later than that for the live vaccine, at about 12 h after the end of the logarithmic growth phase. Different batches of cultures were measured for their relative potency value compared with the in-house reference vaccine, which was used to determine whether the cultures met the antigen amount requirements for vaccine preparation. The curves of the CCU titer and ic-ELISA titer in the logarithmic phase correlated strongly and a linear regression equation was established to calculate the CCU values rapidly using the ic-ELISA results. In conclusion, an ic-ELISA method was established to rapidly assess the amount of antigen in an M. hyopneumoniae culture during the vaccine production process.
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Zhang S, Chen H, Wang L, Qin X, Jiang BP, Ji SC, Shen XC, Liang H. A General Approach to Design Dual Ratiometric Fluorescent and Photoacoustic Probes for Quantitatively Visualizing Tumor Hypoxia Levels In Vivo. Angew Chem Int Ed Engl 2021; 61:e202107076. [PMID: 34227715 DOI: 10.1002/anie.202107076] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Indexed: 02/06/2023]
Abstract
Herein, we describe an energy balance strategy between fluorescence and photoacoustic effects by sulfur substitution to transform existing hemicyanine dyes (Cy) into optimized NIRF/PA dual ratiometric scaffolds. Based on this optimized scaffold, we reported the first dual-ratio response of nitroreductase probe AS-Cy-NO2 , which allows quantitative visualization of tumor hypoxia in vivo. AS-Cy-NO2 , composed of a new NIRF/PA scaffold thioxanthene-hemicyanine (AS-Cy-1) and a 4-nitrobenzene moiety, showed a 10-fold ratiometric NIRF enhancement (I773 /I733 ) and 2.4-fold ratiometric PA enhancement (PA730 /PA670 ) upon activation by a biomarker (nitroreductase, NTR) associated with tumor hypoxia. Moreover, the dual ratiometric NIRF/PA imaging accurately quantified the hypoxia extent with high sensitivity and high imaging depth in xenograft breast cancer models. More importantly, the 3D maximal intensity projection (MIP) PA images of the probe can precisely differentiate the highly heterogeneous oxygen distribution in solid tumor. Thus, this study provides a promising NIRF/PA scaffold that may be generalized for the dual ratiometric imaging of other disease-relevant biomarkers.
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Qiao Z, Cai Q, Fu Y, Lei C, Yang W. Visual and quantitative detection of E. coli O157:H7 by coupling immunomagnetic separation and quantum dot-based paper strip. Anal Bioanal Chem 2021; 413:4417-4426. [PMID: 34013400 DOI: 10.1007/s00216-021-03395-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 04/21/2021] [Accepted: 05/06/2021] [Indexed: 10/21/2022]
Abstract
Simple and visual quantitative detection of foodborne pathogens can effectively reduce the outbreaks of foodborne diseases. Herein, we developed a simple and sensitive quantum dot (QD)-based paper device for visual and quantitative detection of Escherichia coli (E. coli) O157:H7 based on immunomagnetic separation and nanoparticle dissolution-triggered signal amplification. In this study, E. coli O157:H7 was magnetically separated and labeled with silver nanoparticles (AgNPs), and the AgNP labels can be converted into millions of Ag ions, which subsequently quench the fluorescence of QDs in the paper strip, which along with the readout can be visualized and quantified by the change in length of fluorescent quenched band. Owing to the high capture efficiency and effective signal amplification, as low as 500 cfu mL-1 of E. coli O157:H7 could be easily detected by naked eyes. Furthermore, this novel platform was successfully applied to detect E. coli O157:H7 in spiked milk samples with good accuracy, indicating its potential in the detection of foodborne pathogens in real samples.
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Cai Y, Zhang S, Dong C, Yang J, Ma T, Zhang H, Cui Y, Hui W. Lateral flow immunoassay based on gold magnetic nanoparticles for the protein quantitative detection: Prostate-specific antigen. Anal Biochem 2021; 627:114265. [PMID: 34062149 DOI: 10.1016/j.ab.2021.114265] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 05/24/2021] [Accepted: 05/26/2021] [Indexed: 11/18/2022]
Abstract
Point-of-care testing (POCT) demands for rapidly obtaining test results by means of portable analytical instruments and auxiliary reagents at the sampling site. It's important for tumor marker to be recognized and detected in early clinical diagnosis. Many studies focused on producing small portable devices that would allow fast, accurate, and on-site detection. This study aimed to report a magnetic quantitative lateral flow immunoassay (LFIA) system based on poly (acrylic acid) (PAA)-modified gold magnetic nanoparticles (PGMNs) for detecting prostate-specific antigen (PSA) qualitatively and quantitatively. The result was easily achievable with a portable magnetic reader within 15 min. Under optimal conditions, as low as 0.17 ng/mL PSA could be detected. The method was validated using a well-established Solin electrochemiluminescence immunoassay and showed high consistency in detecting 84 serum samples (R2 = 0.98). The quantitative LFIA based on PGMNs established in this study was proven to be rapid, accurate, sensitive, and inexpensive. As a POCT, it can be potentially developed for the quantitative diagnosis of other disease-related protein biomarkers.
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Li S, Wen W, Guo J, Wang S, Wang J. Development of non-enzymatic and photothermal immuno-sensing assay for detecting the enrofloxacin in animal derived food by utilizing black phosphorus-platinum two-dimensional nanomaterials. Food Chem 2021; 357:129766. [PMID: 33892357 DOI: 10.1016/j.foodchem.2021.129766] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2020] [Revised: 03/26/2021] [Accepted: 04/06/2021] [Indexed: 02/04/2023]
Abstract
The two-dimensional black phosphorus nanosheets (BPNSs) provide strong support for the construction of nanozymes with high catalytic performance due to the sheet structure and high electronic activity. A peroxidase-like BP-Pt nanocomposites was successfully synthesized using the instability of BPNS, a non-enzymatic immunosensing assay (NISA) was established with BP-Pt as immunosensing probe. Take the antibiotic enrofloxacin (ENR) as the target, NISA realized the highly sensitive ENR detection with detection limit (IC15) of 0.005 μg/L. In addition, based on the good photothermal performance of oxTMB at 808 nm, a photothermal immunosensing assay (PT-NISA) was established, and ENR detection results was similar to NISA were obtained. In the analysis of the samples, the same detection results as the commercially available enzyme-linked immunoassay kit were obtained. These NISA and PT-NISA provide a more rapid and promising strategy for detecting food contaminants, and was expected to be used to detect other highly sensitive biological macromolecules.
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Lu J, Wu Z, Liu B, Wang C, Wang Q, Zhang L, Wang Z, Chen C, Fu Y, Li C, Li T. A time-resolved fluorescence lateral flow immunoassay for rapid and quantitative serodiagnosis of Brucella infection in humans. J Pharm Biomed Anal 2021; 200:114071. [PMID: 33866295 DOI: 10.1016/j.jpba.2021.114071] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Revised: 04/09/2021] [Accepted: 04/10/2021] [Indexed: 02/06/2023]
Abstract
Brucellosis is a worldwide infectious zoonotic disease, posing severe threats to human health and social-economic development. By comparing with time-consuming, low sensitive and non-quantitative conventional serological methods, herein, protein G (prG) coupled with europium nanospheres (EuNPs) (detection probe) and highly purified Brucella lipopolysaccharide (LPS) (capture antigen) were used to develop a novel time-resolved fluorescence lateral flow immunoassay (TF-LFIA) for detecting anti-Brucella IgG antibody in human plasmas. The entire testing took 15 min. With a satisfactory purity, the purified LPS weakly cross-reacted with Y. enterocolitica O9 diagnostic antibody; however, none reacted with sera from patients with other Gram-negative bacterial infections. Following coefficient of determination (R2 = 0.9961), 0.3 IU/mL was reported as the limit of detection (LOD), much lower than those of Serological Agglutination Test (SAT), Rose-Bengal Plate Agglutination Test (RBPT) and colloidal gold LFIA (CG-LFIA). Intra-day and inter-day precisions (CV, coefficient variation) of TF-LFIA varied less than 8% or 12 %, while intra-day and inter-day accuracies were 94-106 % or 93-107 %, respectively. The correlation coefficient (R2) of TF-LFIA measurement to the different concentrations of spiked Brucella antibody was 0.9967, suggesting TF-LFIA had high reliability and reproducibility. TF-LFIA was demonstrated for 100 % specificity, 98.57 % sensitivity and 99.63 % accuracy in detection of Brucella antibody from clinical samples, respectively, significantly higher compared to SAT and RBPT. In conclusion, the established TF-LFIA is a simple, rapid and quantitative immunoassay for early diagnosis or epidemiological surveillance of Brucella infection in humans.
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Zhang Y, Ding C, Li C, Wang X. Advances in fluorescent probes for detection and imaging of amyloid-β peptides in Alzheimer's disease. Adv Clin Chem 2021; 103:135-190. [PMID: 34229849 DOI: 10.1016/bs.acc.2020.08.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Amyloid plaques generated from the accumulation of amyloid-β peptides (Aβ) fibrils in the brain is one of the main hallmarks of Alzheimer's disease (AD), a most common neurodegenerative disorder. Aβ aggregation can produce neurotoxic oligomers and fibrils, which has been widely accepted as the causative factor in AD pathogenesis. Accordingly, both soluble oligomers and insoluble fibrils have been considered as diagnostic biomarkers for AD. Among the existing analytical methods, fluorometry using fluorescent probes has exhibited promising potential in quantitative detection and imaging of both soluble and insoluble Aβ species, providing a valuable approach for the diagnosis and drug development of AD. In this review, the most recent advances in the fluorescent probes for soluble or insoluble Aβ aggregates are discussed in terms of design strategy, probing mechanism, and potential applications. In the end, future research directions of fluorescent probes for Aβ species are also proposed.
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Zhang Q, Song H, Yu M, Zhang H, Li Z. Preparation of Yellow Fluorescent N,O-CDs and its Application in Detection of ClO . J Fluoresc 2021; 31:659-666. [PMID: 33534115 DOI: 10.1007/s10895-021-02686-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2021] [Accepted: 01/19/2021] [Indexed: 12/11/2022]
Abstract
Accurate and efficient detection of ClO- was extremely important due to the harm of ROS in the environment and organism. In this paper, yellow fluorescent N,O-CDs were successfully prepared by the solvothermal method. The microscopic size of the N,O-CDs was approximately spherical with an average particle size of 4.8 ± 0.8 nm. The fluorescence quantum yield in ethanol solution was calculated as 10.5 % using fluorescein as the standard reference. The as-fabricated N,O-CDs had high sensitivity and low detection limit (7.5 µM) for quantitatively detecting ClO- with a linear range from 0.07 mM to 0.16 mM. The probe not only shows good selectivity and anti-interference to metal ions, anions and amino acids but also has excellent light stability and thermal stability. Also, a wide selection range for pH was demonstrated.
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Mei M, Mu L, Liang S, Wang Y, She G, Shi W. A general configurational strategy to quencher-free aptasensors. Biosens Bioelectron 2021; 178:113025. [PMID: 33529860 DOI: 10.1016/j.bios.2021.113025] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 01/17/2021] [Accepted: 01/20/2021] [Indexed: 11/28/2022]
Abstract
The aptasensor, developed from the aptamer, has aroused wide concern in recent years owing to its high sensitivity and specificity. However, the quenching unit involved in the most of the aptasensors is indispensable to the fabrication of an aptasensor, which would undoubtedly increase the complexity of the device. In this study, a facile strategy was developed for construction of the quencher-free aptasensors, in which the quenching units can be omitted, and only an aptamer strand and a fluorophore are necessary. Distinguishable from the configuration of the traditional ones, the aptasensors developed in this work rationally employed the intrinsic quenching abilities of the analytes to directly regulate the fluorescence of the fluorophore. Furthermore, the aptamer strand as a discriminatory unit efficiently captured the corresponding analytes to around the fluorophores. As a result, the fluorescence of the aptasensor can be significantly sensitive to the analytes. The generality of the current design is evidenced by the successful fabrication of seven quencher-free aptasensors for Cu2+, Ag+, Hg2+, ATP and dopamine through 6-FAM labeling aptamers of Cu2+, Ag+, Hg2+, ATP, dopamine, 5-TAMRA and ROX labeling aptamers of Cu2+. Present strategy endows an aptasensor with a simple structure, high selectivity and fine sensitivity. The configuration of the quencher-free aptasensors fabricated in this work can be readily utilized for more aptasensors.
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A modified nanocomposite biosensor for quantitative l-glutamate detection in beef. Meat Sci 2020; 168:108185. [PMID: 32487350 DOI: 10.1016/j.meatsci.2020.108185] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 03/29/2020] [Accepted: 05/08/2020] [Indexed: 11/22/2022]
Abstract
A new biosensor for detecting l-glutamate (l-Glu) in beef was developed. Firstly, a bare Au electrode was surface-modified by gold nanoparticles (Au NPs), graphene oxide (GO), and chitosan (CS) as immobilized materials, and then its surface was connected with l-glutamate oxidase (GluOx). The modified Au NPs/GO/CS electrode was characterized by scanning electron microscopy, and the formation mechanism was elaborated. The response current of the l-Glu biosensor maximized to 0.08 mA at pH 7.5 and 0.09 mA at 30 °C, with a detection range of 0.2-1.4 mM and a detection limit of 0.023 mM. The l-Glu biosensor had high accuracy, and its results linearly fitted with those of the amino acid analyzer with a coefficient of 0.996. The l-Glu biosensor had high selectivity, repeatability, and stability and detected higher l-Glu content in the cooked beef than in the raw beef.
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Shanmugaraj K, Sasikumar T, Campos CH, Ilanchelian M, Mangalaraja RV, Torres CC. Colorimetric determination of cysteamine based on the aggregation of polyvinylpyrrolidone-stabilized silver nanoparticles. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 236:118281. [PMID: 32335419 DOI: 10.1016/j.saa.2020.118281] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 03/19/2020] [Accepted: 03/19/2020] [Indexed: 06/11/2023]
Abstract
A simple, colorimetric and visual method is described for the determination of cysteamine (CA) using polyvinylpyrrolidone-stabilized silver nanoparticles (PVP-AgNPs) as a colorimetric probe. The sensing method was based on the aggregation of PVP-AgNPs that led to the changes in the color and absorption profile of the probe. The aggregation of PVP-AgNPs in the presence of CA was evidenced by using transmission electron microscopy (TEM), zeta and dynamic light scattering (DLS) measurements. A distinct color transition could be observed with the naked eye from pale yellow color of PVP-AgNPs to purple. PVP-AgNPs probe showed an excellent selectivity towards CA versus other interfering biomolecules, cations and anions. Furthermore, the colorimetric probe had a linear response for CA from 0.1 to 1.0 μM concentration range with the limit of detection (LOD) of 4.9 nM. The prepared probe was successfully utilized for the determination of CA in blood serum as biological samples.
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Deng L, He XY, Tang B, Xiang Y, Yue JJ. An improved quantitative real-time polymerase chain reaction technology for Helicobacter pylori detection in stomach tissue and its application value in clinical precision testing. BMC Biotechnol 2020; 20:33. [PMID: 32571272 PMCID: PMC7310109 DOI: 10.1186/s12896-020-00624-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Accepted: 05/19/2020] [Indexed: 12/11/2022] Open
Abstract
BACKGROUND Helicobacter pylori (H. pylori) infection is a serious human health threat. The empiric H. pylori treatment paradigm guided by traditional testing technologies has led to antibiotic resistance. Here, we improved the qPCR method to provide technical support for precision H. pylori diagnosis and treatment. METHODS Two pairs of primers and probes targeting the glmM gene were designed to detect H. pylori, and a multiplex qPCR method was established for virulence factor detection. Then, a rapid urease test (RUT), culturing and qPCR were performed on 141 specimens collected from Xinqiao Hospital of China in 2017 to evaluate the qPCR detection capability. Finally, the H. pylori infectious amount and virulence genes were detected by qPCR. RESULTS 1. The improved qPCR method which used two pairs of primers had a higher detection rate (100%) and better accuracy (p = 0.000), compared with the qPCR using a pair of primers. It also had better consistency with the bacterial culture than with RUT (Kappa =0.440, p < 0.001). 2. The H. pylori infectious amount was significantly positively associated with gastritis in corpus (p = 0.003) and gastric erosion (p = 0.043). The H. pylori infectious amount in gastric precancerous patients was significantly lower than that in H. pylori-positive patients (p < 0.05), and the infectious H. pylori-vacA s1+ amount was significantly greater than that of H. pylori-vacA s1- (p < 0.05). 3. The vacA s1 frequency was significantly higher than that of vacA m1/cagA+/babA2+ in chronic superficial gastritis (p = 0.000), peptic ulcer (p = 0.037) and gastric erosion (p = 0.009). The H. pylori-vacA+/cagA+/babA2+ frequency showed a significant positive correlation (p < 0.05). CONCLUSIONS The H. pylori infectious amount and presence of H. pylori virulence factors showed complex correlations with gastric disease occurrence and development. The improved qPCR with good detection performance can be used for quantitative H. pylori detection and testing for the virulence genes vacA s1, vacA m1, cagA and babA2 simultaneously. These findings will provide valuable information for disease diagnosis and treatment.
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Shang Y, Xu Y, Huang K, Luo Y, Xu W. Multiplex pyrosequencing quantitative detection combined with universal primer-multiplex-PCR for genetically modified organisms. Food Chem 2020; 320:126634. [PMID: 32208182 DOI: 10.1016/j.foodchem.2020.126634] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 02/27/2020] [Accepted: 03/16/2020] [Indexed: 10/24/2022]
Abstract
A multiplex pyrosequencing quantitative detection technique combined with universal primer-multiplex-PCR (UP-M-PCR) was established. In this study, a pyrosequencing results analysis software was first self-compiled, which realized the DNA sequences degeneration, and converted the pyrosequencing results and base composition of the target sequences into mathematic relations. Five calculation models were put forward based on the actual situation, which adjusted the values smaller than zero or the detection limit. By applying this method, samples containing five genetically modified (GM) lines mixed in random ratio were quantified, it showed that the quantification was very close to the actual value, and the detection sensitivity was as low as 1.47% of a single component, which satisfied most labeling policies. This novel method is realized without fluorescent group labeling, hence the number of targets is not limited by factors inherent in method or equipment, and is proven to be a reliable tool for the quantitative detection.
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Zhou Y, Liang P, Zhang D, Tang L, Dong Q, Jin S, Ni D, Yu Z, Ye J. A facile seed growth method to prepare stable Ag@ZrO 2 core-shell SERS substrate with high stability in extreme environments. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 228:117676. [PMID: 31767414 DOI: 10.1016/j.saa.2019.117676] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 10/16/2019] [Accepted: 10/17/2019] [Indexed: 06/10/2023]
Abstract
A stable substrate is extraordinarily important for the trace detection of Surface Enhanced Raman Scattering technique. We have designed in this paper a simple seed growth method to prepare Ag@ZrO2 core-shell nanoparticles as well as regulate the core-shell ratio by adjusted concentration of zirconium propoxides added. The shell thickness effect and spacing on SERS activities have been simulated in different finite time domains, which goes perfectly with those previous experiment results. With Ag@ZrO2 core-shell nanoparticles adopted as the SERS substrate and R6G as molecular probe, the detection range could reach as great as 10-8 M. The regression model, obtained through principal component analysis, is adopted for some rapid and precise detection; and the determination coefficient (R2) is going up to 0.9743, proving that the SERS substrate we have prepared has extremely high detection accuracy. To explore the stability of core-shell nanoparticles, we have taken both two different cases of strong acid solution as well as strong alkali solution for the core-shell nanoparticle etching, and this is how a SERS test could be carried out. These experimental results have indicated that the outer zirconia layer could keep the silver surface from oxidation and its stability is ensured, quite crucial for the applied SERS.
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Construction of a recyclable oxidase-mimicking Fe 3O 4@MnO x-based colorimetric sensor array for quantifying and identifying chlorophenols. Anal Chim Acta 2020; 1107:203-212. [PMID: 32200895 DOI: 10.1016/j.aca.2020.02.024] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 01/30/2020] [Accepted: 02/10/2020] [Indexed: 11/20/2022]
Abstract
Chlorophenols (CPs) are known as a class of pollutants posing a great threat to the environment and human health because of their carcinogenesis and teratogenesis, and thus exploring convenient and efficient methods for their detection and identification becomes particularly important. Herein, we report a recyclable colorimetric sensor array according to the oxidase-mimicking catalytic characteristics of Fe3O4@MnOx for the high-performance quantification and differentiation of typical CPs. The core-shell Fe3O4@MnOx prepared by growing oxidase-like MnOx nanoflakes on the surface of magnetic Fe3O4 particles via a hydrothermal process can exhibit excellent catalytic activity to trigger the color reaction of CPs and 4-aminoantipyrine with the participation of O2. By utilizing the Fe3O4@MnOx-catalyzed color reaction, high-sensitivity quantitative analysis of CPs, taking 2-chlorophenol as a model, was realized, providing a detection limit as low as 0.85 μM. Given different chlorine substitution places and numbers in CPs impact the reaction kinetics diversely, a new nanozyme-based colorimetric sensor array was further constructed for the successful differentiation of various CPs with the help of hierarchical cluster analysis and principal component analysis. Accurate double-blind identification of unknown samples using the proposed sensor array was also demonstrated, indicating its reliability for practical practice.
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A single cell droplet microfluidic system for quantitative determination of food-borne pathogens. Talanta 2019; 209:120571. [PMID: 31892085 DOI: 10.1016/j.talanta.2019.120571] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 11/13/2019] [Accepted: 11/14/2019] [Indexed: 11/21/2022]
Abstract
Single-cell detection methods are already of great significance for many bioanalysis applications, and droplet microfluidics technology is understood as particularly a powerful tool. Salmonella infection is a major hygienic problem worldwide that causes major public health and economic damage, and preventing Salmonella outbreaks requires detection food-borne detection methods that are rapid, portable, and reliable, ideally without the need for complicated pre-treatment protocol steps. Herein, we present a single-cell-level analysis method based on droplet microfluidics that can sensitively and rapidly detect Salmonella directly from food samples. Specifically, this method achieves single-cell encapsulation of Salmonella in droplets of a growth medium with resazurin that enables fluorescence-based detection of pathogens within 5 h. The ratio of positive droplets in a Poisson Distribution is used for quantitation, and the detection limit of our system determined to be 50 CFU/mL, a value lower than conventional analytical methods for assessing Salmonella contamination. Our experimental results demonstrate the precise and highly sensitive performance of a single-cell-precision, droplet-based microfluidic chip analytical method for monitoring pathogenic bacteria in food. Beyond our example case of Salmonella detection from milk samples, our work lays the foundation for a new generation of microfluidics-based analytical technologies for both public health and food safety applications which can undoubtedly benefit from increases in the sensitivity and rapidity of food-borne pathogen detection.
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Chen J, Meng HM, An Y, Geng X, Zhao K, Qu L, Li Z. Structure-switching aptamer triggering hybridization displacement reaction for label-free detection of exosomes. Talanta 2019; 209:120510. [PMID: 31892034 DOI: 10.1016/j.talanta.2019.120510] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Revised: 10/15/2019] [Accepted: 10/26/2019] [Indexed: 01/06/2023]
Abstract
Exosomes play important roles in intercellular communications, tumor migration and invasion. However, the specific detection of cancer exosomes remains as a big challenge due to its low concentration in biofluids. Therefore, the sensitive and selective detection of cancer cells-derived exosomes has attracted growing attention owing to their potential in diagnostic and prognostic applications. Activatable strategies have received great attention for the detection of low abundant analytes due to their high sensitivity. Herein, based on molecular recognition between DNA aptamer and exosome surface biomarker (protein tyrosine kinase-7), a novel activatable and label-free strategy was designed for highly sensitive and specific sensing of exosomes. In this work, the target exosomes trigger strand replacement reaction to form G-quadruplex, which result in an obvious fluorescence enhancement of N-methylmesoporphyrin IX due to the bonding between G-quadruplex and N-methylmesoporphyrin IX. Under the optimum experimental conditions, the linear range for exosomes was measured to be 5.0 × 105-5.0 × 107 particles/μL and the detection limit (LOD) was calculated to be 3.4 × 105 particles/μL (3σ). This assay possesses high specificity to distinguish exosomes derived from different cell lines, and has successfully been validated in patient and healthy plasma samples. Furthermore, the probe can effectively detect the exosomes in 30% fetal bovine serum, indicating that the biological matrix has a negligible effect on this method. This developed label-free, convenient and highly sensitive biosensor will offer a great opportunity for exosomes quantification in biological study and clinical application.
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Reproducibility of antigen-immobilized enzyme-linked immunosorbent assay (ELISA) and sandwich ELISA for quantitative detection of NNV particles. J Virol Methods 2019; 275:113754. [PMID: 31629807 DOI: 10.1016/j.jviromet.2019.113754] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Revised: 09/04/2019] [Accepted: 10/13/2019] [Indexed: 12/15/2022]
Abstract
Nervous necrosis virus (NNV) is a fish virus belonging to family Nodaviridae. In this study, we prepared partially aggregated and monometric NNV particles to determine reproducibility of two different enzyme-linked immunosorbent assays (ELISAs): antigen-immobilized ELISA and sandwich ELISA. Passing ratios of purified NNV particles through ultrafilters with molecular weight cut off (MWCO) of 105, 3 × 105 and 106 were 0%, 35.2% and 80.3%, respectively, suggesting that purified NNV particles were partially aggregated whereas those in filtrates with MWCO of 3 × 105 could be monometric. Both NNV particles were subjected to ELISAs. Reduction ratios of ELISA values by 2-fold dilution of antigens were 50% in sandwich ELISA regardless of aggregation state of NNV particles. In contrast, those in antigen-immobilized ELISA were 42% (partially aggregated NNV) to 43% (monometric NNV), which were lower than the theoretical value (50%). This could be due to changes in aggregation state of NNV particles during dry-immobilization. Sandwich ELISA has excellent reproducibility from five times of experiments, in comparison with antigen-immobilized ELISA. Furthermore, available range of regression lines (R2 > 0.99) in sandwich ELISA was wider than that in antigen-immobilized ELISA. These results revealed that sandwich ELISA had better quantitativeness, reproducibility and available range of ELISA values than antigen-immobilized ELISA.
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Shao H, Wen X, Ding Y, Hong X, Zhao H. Colorimetric determination of copper(II) by using branched-polyethylenimine droplet evaporation on a superhydrophilic-superhydrophobic micropatterned surface. Mikrochim Acta 2019; 186:701. [PMID: 31620903 DOI: 10.1007/s00604-019-3805-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Accepted: 09/08/2019] [Indexed: 12/31/2022]
Abstract
A colorimetric method is described for the determination of Cu(II). It is based on branched polyethylenimine (BPEI) droplet evaporation on a superhydrophilic-superhydrophobic polystyrene micropatterned surface. Exposure to Cu(II) leads to a color change from colorless to light blue and dark blue. The micropatterned surface was fabricated via combining electrospinning with oxygen plasma and served as a detection substrate. Analysis requires only a single drop of blood. The method has a linear response in the 5.0 μM to 2.5 mM Cu(II) concentration range which is within the physiological range (15.7 ∼ 23.6 μM). Compared to an assay in solution, the detection limit is decreased from 386 nM to 89 nM. Excellent selectivity over other metal ions and anions was achieved. Graphical abstract A rapid and sensitive colorimetric detection platform for Cu(II) was fabricated by using branched-polyethylenimine droplet evaporation on a superhydrophilic-superhydrophobic micropatterned surface. Only a single drop of blood was needed for the analysis. The sensitivity was improved about 4.3 times.
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Cui Z, Zhang X, Cheng Z, Li Y, Xiao H. Quantitative analysis of SO 2, H 2S and CS 2 mixed gases based on ultraviolet differential absorption spectrometry. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 215:187-195. [PMID: 30825866 DOI: 10.1016/j.saa.2019.01.075] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2017] [Revised: 01/23/2019] [Accepted: 01/26/2019] [Indexed: 06/09/2023]
Abstract
SO2, H2S and CS2 are the decomposition components of insulating gas SF6. The detection of these gases is significant for the online monitoring and fault diagnosis of SF6 electrical equipment. In this study, an ultraviolet differential optical absorption spectrometry (UV-DOAS) platform for detecting the concentration of SO2, H2S and CS2 mixed gases was established and a quantitatively detecting method was proposed. Firstly, the concentration of SO2 was calculated by the spectrum data at 300 nm band. Then the gas mixture spectra of H2S and CS2 at 200 nm band were obtained after linear deduction of SO2 spectrum. By wavelet extraction and fourier transform, the spectral information of H2S and CS2 was separated and the concentrations of the two gases were calculated. The method can detect the concentrations of SO2 (1-20 ppm), H2S (1-20 ppm) and CS2 (0.01-2 ppm) ternary gas mixture and the detection limits of SO2, H2S and CS2 are 0.44 ppm, 0.49 ppm and 3.23 ppb. This method has good detection sensitivity and high detection precision, which is suitable for the on-line monitoring of SF6 gas insulated equipment.
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Li S, Zhang Y, Wen W, Sheng W, Wang J, Wang S, Wang J. A high-sensitivity thermal analysis immunochromatographic sensor based on au nanoparticle-enhanced two-dimensional black phosphorus photothermal-sensing materials. Biosens Bioelectron 2019; 133:223-229. [PMID: 30951982 DOI: 10.1016/j.bios.2019.03.039] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 03/15/2019] [Accepted: 03/18/2019] [Indexed: 11/17/2022]
Abstract
For the first time, a quantitative photothermal-sensing immunochromatographic sensor (PT-ICS) is described using Au nanoparticle-enhanced two-dimensional black phosphorus (BP-Au) as signal component for the photothermal-sensing antibody probe. BP-Au has good photothermal properties at 808 nm, and the photothermal conversion efficiency of the BP-Au nanosheet increased by 12.9% over the black phosphorus nanosheet alone. In addition, the antibody was more easily coupled to this nanosheet due to the good physical adsorption capacity of Au nanoparticles. We used this PT-ICS to detect veterinary antibiotics enrofloxacin (ENR), the photothermal-sensing antibody probe was competitive captured by ENR target and antigen coating on test (T) lines of the sensor. This process was exothermic under an 808 nm laser, and the thermal energy decreased as the ENR in the sample increased. This thermal energy was recorded by an infrared thermal imager or an infrared thermometer, and the concentration of the ENR residues in animal-derived foods was obtained by analyzing the temperature changes in T-lines. Under optimal conditions, the PT-ICS exhibited sensitive and specific detection of ENR from 0.03 μg/L to 10 μg/L with detection limits of 0.023 μg/L. The results agreed well with a commercial enzyme-linked-immunosorbent assay kit. This PT-ICS provided a promising strategy for the detection of ENR residues in animal-derived foods and expected to be used for the detection of other highly sensitive biomacromolecules.
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Tan DM, Lyu SL, Liu W, Zeng XY, Lan L, Qu C, Zhuge SY, Zhong YX, Xie YH, Li XG. Utility of Droplet Digital PCR Assay for Quantitative Detection of Norovirus in Shellfish, from Production to Consumption in Guangxi, China. BIOMEDICAL AND ENVIRONMENTAL SCIENCES : BES 2018; 31:713-720. [PMID: 30423272 DOI: 10.3967/bes2018.096] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Accepted: 09/17/2018] [Indexed: 06/09/2023]
Abstract
OBJECTIVE Shellfish are recognized as important vehicles of norovirus-associated gastroenteritis. The present study aimed to monitor norovirus contamination in oysters along the farm-to-fork continuum in Guangxi, a major oyster production area in Southwestern China. METHODS Oyster samples were collected monthly from farms, markets, and restaurants, from January to December 2016. Norovirus was detected and quantified by one-step reverse transcription-droplet digital polymerase chain reaction (RT-ddPCR). RESULTS A total of 480 oyster samples were collected and tested for norovirus genogroups I and II. Norovirus was detected in 20.7% of samples, with genogroup II predominating. No significant difference was observed in norovirus prevalence among different sampling sites. The norovirus levels varied widely, with a geometric mean of 19,300 copies/g in digestive glands. Both norovirus prevalence and viral loads showed obvious seasonality, with a strong winter bias. CONCLUSION This study provides a systematic analysis of norovirus contamination 'from the farm to the fork' in Guangxi. RT-ddPCR can be a useful tool for detection and quantification of low amounts of norovirus in the presence of inhibitors found particularly in foodstuffs. This approach will contribute to the development of strategies for controlling and reducing the risk of human illness resulting from shellfish consumption.
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