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Kalmár C, Turányi T, Zsély IG, Papp M, Hegedűs F. The importance of chemical mechanisms in sonochemical modelling. ULTRASONICS SONOCHEMISTRY 2022; 83:105925. [PMID: 35149378 PMCID: PMC8841831 DOI: 10.1016/j.ultsonch.2022.105925] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 01/11/2022] [Accepted: 01/16/2022] [Indexed: 05/24/2023]
Abstract
A state-of-the-art chemical mechanism is introduced to properly describe chemical processes inside a harmonically excited spherical bubble placed in water and saturated with oxygen. The model uses up-to-date Arrhenius-constants, collision efficiency factors and takes into account the pressure-dependency of the reactions. Duplicated reactions are also applied, and the backward reactions rates are calculated via suitable thermodynamic equilibrium conditions. Our proposed reaction mechanism is compared to three other chemical models that are widely applied in sonochemistry and lack most of the aforementioned modelling issues. In the governing equations, only the reaction mechanisms are compared, all other parts of the models are identical. The chemical yields obtained by the different modelling techniques are taken at the maximum expansion of the bubble. A brief parameter study is made with different pressure amplitudes and driving frequencies at two equilibrium bubble sizes. The results show that due to the deficiencies of the former reaction mechanisms employed in the sonochemical literature, several orders of magnitude differences of the chemical yields can be observed. In addition, the trends along a control parameter can also have dissimilar characteristics that might lead to false optimal operating conditions. Consequently, an up-to-date and accurate chemical model is crucial to make qualitatively and quantitatively correct conclusions in sonochemistry.
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Xiong J, Wang H, Yao J, He Q, Ma J, Yang J, Liu C, Chen Y, Huangfu X, Liu H. A critical review on sulfur reduction of aqueous selenite: Mechanisms and applications. JOURNAL OF HAZARDOUS MATERIALS 2022; 422:126852. [PMID: 34399225 DOI: 10.1016/j.jhazmat.2021.126852] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 07/28/2021] [Accepted: 08/05/2021] [Indexed: 06/13/2023]
Abstract
Selenite, which is extremely toxic at high concentrations, can easily be enriched in natural aquatic environments due to human activities, which causes great harm to ecosystems. Sulfur reduction can effectively reduce soluble selenite in large quantities to nontoxic solid elemental selenium, which plays a significant role in controlling the toxicity and cycle of selenium. In view of the bright prospects of the sulfur reduction reaction of selenite, this review comprehensively summarizes the continuous development in the sulfidation of selenite. First, the geochemical characteristics of aqueous selenium in different sulfur systems involving species distribution and various phase types at Eh-pH conditions were summarized. Second, sulfur reductions of selenite with chemical sulfide in natural water environments, sulfur reductase and extracellular polymer substances containing thiol groups in sulfate-reducing bacteria have been reviewed to further understand the corresponding mechanisms, rates and influencing factors. Furthermore, applications of sulfur reduction of selenium, including removal of selenium, enrichment of selenium, synthesis of selenoproteins and prevention of leakage of selenium, were also summarized. Finally, this review identified future research needs for the sulfidation of selenite for environmental applications.
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Altarawneh M, Almatarneh MH, Dlugogorski BZ. Thermal decomposition of perfluorinated carboxylic acids: Kinetic model and theoretical requirements for PFAS incineration. CHEMOSPHERE 2022; 286:131685. [PMID: 34388878 DOI: 10.1016/j.chemosphere.2021.131685] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Revised: 07/21/2021] [Accepted: 07/25/2021] [Indexed: 05/27/2023]
Abstract
Thermal decomposition of high-fluorine content PFAS streams for the disposal of old generations of concentrates of firefighting foams, exhausted ion-exchanged resins and granular activated carbon, constitutes the preferred method for destruction of these materials. This contribution studies the thermal transformation of perfluoropentanoic acid (C4F9C(O)OH, PFPA), as a model PFAS species, in gas-phase reactions over broad ranges of temperature and residence time, which characterise incinerators and cement kilns. Our focus is only on gas-phase reactions, to formulate a gas-phase submodel that, in future, could be used in comprehensive simulation of thermal destruction of PFAS; such comprehensive models will need to comprise fluorine mineralisation on flyash and in clinker material. Our submodel consists of 56 reactions and 45 species, and includes new pathways that cover the initial decomposition channels of PFPA, including those that lead to the formation of the n-C4F9 radical, the abstraction of hydroxyl H by O/H radicals, the fragmentation of the n-C4F9 radical, reactions between HF and perfluoropentanoic acid, as well as between HF and heptafluorobutanoyl fluoride (C3F7COF), and the cyclisation reactions. The model illustrates the formation of a wide spectrum of small CnFm and CnHFm compounds in the temperature window of 800-1500 K, 2 and 25 s residence time in a plug flow reactor, providing theoretical estimates for the operating conditions of PFAS thermal destruction systems. The initiation reactions involve the loss of HF and formation of the transition α-lactone species that converts to C3F7COF, with C4F9C(O)OH completely decomposed at 1020 K for 2 s residence time. At 1500 K, we predict the emission of ꞉CF2 (biradical difluorocarbene), HF, CO2, CO, CF4, C2F6, and C2F4, but at < 1400 K, we note the formation of 1H-nonafluorobutane (C4HF9), phosgene (COF2), and heptafluorobutanoyl fluoride (C3F7COF), with 1-C4F8, 2-C4F8 and C3HF7 persisting to 1500 K. We demonstrate that, the gas-phase pyrolysis processes by themselves convert PFAS to HF and short-chain fluorocarbons, with similar product distribution for short (2 s) and long (25 s) residence times, as long as the treatment temperature exceeds 1500 K. These residence times reflect those encountered in incinerators and cement kilns, respectively. Thermokinetic and mechanistic insights revealed herein shall assist to innovate PFAS thermal disposal technologies, and, from a fundamental perspective, to accelerate research progress in modelling of gas/solid reactions that mineralise PFAS-derived fluorine.
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Chen H, Xia A, Zhu X, Huang Y, Zhu X, Liao Q. Hydrothermal hydrolysis of algal biomass for biofuels production: A review. BIORESOURCE TECHNOLOGY 2022; 344:126213. [PMID: 34715338 DOI: 10.1016/j.biortech.2021.126213] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/18/2021] [Accepted: 10/20/2021] [Indexed: 06/13/2023]
Abstract
Hydrothermal hydrolysis is an energy-efficient and economical pretreatment technology to disrupt the algal cells and hydrolyze the intracellular compounds, thereby promoting the biofuels production of fermentation. However, complex reaction mechanisms, unpredictable rheological properties of algal slurry, and immature continuous reactors still constrain the commercialization of such a process. To systematically understand the existing status and lay a foundation for promoting the technology, the chemical mechanism of hydrothermal hydrolysis of algal biomass is elaborated in this paper, and the influences of temperature, residence time, total solid content, and pH, on the biomethane production of hydrolyzed algal biomass are summarized. Besides, a comprehensive overview of the rheological behavior of algal slurries is discussed at various operational factors. The recent advances in flow, heat and mass transfer model coupling with the generic kinetics model in continuous reactors and the application of energy-saving strategies for efficient algal biomass pretreatment are detailed reviewed.
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Mai S, Holzer M, Andreeva A, González L. Jahn-Teller Effects in a Vanadate-Stabilized Manganese-Oxo Cubane Water Oxidation Catalyst. Chemistry 2021; 27:17066-17077. [PMID: 34643965 PMCID: PMC9298120 DOI: 10.1002/chem.202102539] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Indexed: 12/11/2022]
Abstract
Heuristic rules that allow identifying the preferred mixed‐valence isomers and Jahn‐Teller axis arrangements in the water oxidation catalyst [(Mn4O4)(V4O13)(OAc)3]n− and its activated form [(Mn4O4)(V4O13)(OAc)2(H2O)(OH)]n− are derived. These rules are based on computing all combinatorially possible mixed‐valence isomers and Jahn‐Teller axis arrangements of the MnIII atoms, and associate energetic costs with some structural features, like crossings of multiple Jahn‐Teller axes, the location of these axes, or the involved ligands. It is found that the different oxidation states localize on different Mn centers, giving rise to clear Jahn‐Teller distortions, unlike in previous crystallographic findings where an apparent valence delocalization was found. The low barriers that connect different Jahn‐Teller axis arrangements suggest that the system quickly interconverts between them, leading to the observation of averaged bond lengths in the crystal structure. We conclude that the combination of cubane‐vanadate bonds that are chemically inert, cubane‐acetate/water bonds that can be activated through a Jahn‐Teller axis, and low activation barriers for intramolecular rearrangement of the Jahn‐Teller axes plays an essential role in the reactivity of this and probably related compounds.
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Phan TT, Dao LTT, Giang LPT, Nguyen MT, Nguyen HMT. Mechanistic insights into the dehydrogenation of formaldehyde, formic acid and methanol using the Pt 4 cluster as a promising catalyst. J Mol Graph Model 2021; 111:108096. [PMID: 34875503 DOI: 10.1016/j.jmgm.2021.108096] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Revised: 11/22/2021] [Accepted: 11/23/2021] [Indexed: 11/28/2022]
Abstract
Reaction mechanisms of the dehydrogenation of formaldehyde, formic acid and methanol on the Pt4 cluster were computationally investigated using density functional theory (DFT) with the B3LYP functional in the conjunction with the aug-cc-pVTZ basis sets for H, C and O atoms, and the cc-pVDZ-PP basis set for Pt. Herein, the key mechanistic aspects of three possible pathways of the dehydrogenation of these compounds are summarized. The results indicate that the formation of H2 and CO or CO2 molecules is more energetically favorable than the generation of H and H2O, HCHO products. Generally, the formation of H2 molecule in the presence of catalysts is more favorable than the direct decomposition of either HCHO, HCOOH or CH3OH molecule. The use of Pt4 catalyst significantly reduces the energy barriers for C-H and O-H bond cleavage of all three compounds to 14, 9 and 12 kcal/mol, respectively. The decomposition of HCOOH is found to be the most energetically favorable. In addition, the mechanistic insights of the reactions confirm the reduction of the energy barriers of the gas-phase dehydrogenation by 67-82 kcal/mol and bring it to the values smaller than 14 kcal/mol in the presence of the Pt4 catalysts.
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Fang X, Andersson MP, Wang Z, Song W, Li S. Density functional theory study on the initial reactions of d-Xylose and d-Xylulose dehydration to furfural. Carbohydr Res 2021; 511:108463. [PMID: 34741878 DOI: 10.1016/j.carres.2021.108463] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Revised: 10/19/2021] [Accepted: 10/22/2021] [Indexed: 11/27/2022]
Abstract
The mechanism of the initial reactions in the acid-catalytic conversion of d-xylose/d-xylulose to furfural was studied with density functional theory. The reactions included mutual transformations among d-xylose, d-xylulose and the intermediate of 1,2-enediol. The catalytic performances of several acids including H2SO4, HNO3, HCl, HBr and HI, and the solvent effects of water and THF (tetrahydrofuran) were studied. A simplified kinetic model of the d-xylose/d-xylulose-to-furfural conversion in water solvent was built, with the assumption that the conversion from 1,2-enediol to furfural was the rate-limiting step and could be treated as one-step reaction. The simulation can well fit the experimental regulation, which verifies the rationality of the model simplification. The dominant reaction pathways from d-xylose/d-xylulose to furfural were deduced based on the calculated energy barriers and corresponding reaction rate constants, with different acid catalysis and reaction mediums.
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Pinkard BR, Shetty S, Stritzinger D, Bellona C, Novosselov IV. Destruction of perfluorooctanesulfonate (PFOS) in a batch supercritical water oxidation reactor. CHEMOSPHERE 2021; 279:130834. [PMID: 34134433 DOI: 10.1016/j.chemosphere.2021.130834] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 05/03/2021] [Accepted: 05/05/2021] [Indexed: 05/22/2023]
Abstract
Effective technologies are needed for the destruction of per- and polyfluoroalkyl substances (PFAS). One promising technology is supercritical water oxidation (SCWO), which can be accommodated in batch or continuous reactors. Many PFAS-laden wastes consist primarily of solid particles, and batch SCWO processing may offer safe end-of-life PFAS destruction for these feedstocks. In this study, perfluorooctanesulfonate (PFOS) is reacted via supercritical water oxidation in a batch reactor at temperatures between 425 and 500 °C and residence times from 0 to 60 min, to determine the effect of both parameters on the extent of destruction and defluorination. Analysis of liquid products via targeted LC-QToF-MS does not indicate production of intermediate fluorocarbons. However, a low fluorine mass balance at temperatures of 425 and 450 °C may indicate the existence of fluorinated species in the gaseous and/or liquid product which are not detected by targeted analysis. Destruction and defluorination efficiencies are determined for each tested condition, with a maximum 70.0% PFOS destruction and 78.2% defluorination achieved after 60 min of reaction at 500 °C.
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Riyaz M, Gupta S, Goel N. First Principle Studies to Tailor Graphene Through Synergistic Effect as a Highly Efficient Electrocatalyst for Oxygen Evolution Reaction. Chemphyschem 2021; 22:1141-1147. [PMID: 33871907 DOI: 10.1002/cphc.202001020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 04/07/2021] [Indexed: 11/06/2022]
Abstract
The Oxygen Evolution Reaction (OER) is one of the major roadblocks for electrocatalytic oxidation of water (water splitting) and for designing efficient metal-air batteries. Herein, we present a comprehensive study to design graphene based efficient electrocatalyst, modified by doping with main group elements Al, Si, P, S and co-doping with B and N, for OER using DFT computations. Four elementary steps in the OER reaction have been traced, free energy change for each elementary step was calculated considering thermodynamic corrections. Out of all the doped models, S doped graphene shows maximum efficiency that was further enhanced by adjusting the concentration of codopants B and N around the active dopant site. Our results show that synergy between codopants B and N and dopant S atom leads to high electrocatalytic efficiency of modified graphene towards OER and brings down the overpotential to as low as 0.44 V.
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Fukushima R, Tardif O, Kaita S, Wakatsuki Y, Koga N. Polymerization via Insertion of Ethylene into Al-C bond under Mild Conditions: Mechanistic Studies on the Promotion Exerted by a Catalytic Amount of Cationic Gadolinium Metallocene. Chem Asian J 2021; 16:1403-1416. [PMID: 33792197 DOI: 10.1002/asia.202100193] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 03/26/2021] [Indexed: 11/06/2022]
Abstract
The cationic gadolinium metallocene [(C5 Me5 )2 Gd][B(C6 F5 )4 ], when combined with an excess amount of Al(i Bu)3 , efficiently produces polyethylene at 80 °C under 0.8 MPa pressure of ethylene. After quenching, the resulting polyethylene has ethyl group at one end and isobutyl group at the other terminal. Because no Gd-alkyl species appears to be involved, a mechanism with conventional coordinative chain transfer polymerization (CCTP) is not feasible. Density functional theory (DFT) analyses indicate a novel mechanism in which the cationic Gd plays a crucial role by coordinating ethylene and assists the insertion of the coordinated ethylene into Al-C bond.
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Sun Y, Chen X, Liu L, Xu F, Zhang X. Mechanisms and kinetics studies of the atmospheric oxidation of eugenol by hydroxyl radicals and ozone molecules. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 770:145203. [PMID: 33736372 DOI: 10.1016/j.scitotenv.2021.145203] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 01/09/2021] [Accepted: 01/11/2021] [Indexed: 06/12/2023]
Abstract
Eugenol is a representative methoxyphenol derived from the pyrolysis of lignin containing a branched alkene group. Its concentration in the atmosphere is equivalent to guaiacol and syringol. In this present paper, the gas phase reaction mechanisms and kinetic parameters of eugenol with hydroxyl radicals (OH) and ozone molecules (O3) were calculated at the M06-2×/6-311+G(3df,2p)//M06-2×/6-311+G(d,p) level. There are two distinct reaction types between eugenol and OH. In particular, Path2 is most favorable in the OH additions, whereas IM16 is most advantageous in H atom abstraction pathways. OH additions have more advantages than H abstraction reactions. Thus, the comprehensive and detailed reaction schemes for the further reactions of IM2 were presented. The main products generated by IM2 are methyl (Z)-3-(2-formylpenta-1,4-dien-1-yl)-2-hydroxyoxirane-2-carboxylate (P2B-4), 2-methoxy-2-oxoacetic acid (P2B-10), 2-allylmalealdehyde (P2B-11) and other carbonyl or carboxyl compounds. As for the reaction of eugenol with O3, the cycloaddition reactions and subsequent oxidative degradation processes were also explored, which yielded the most dominant product 2-(4-hydroxy-3-methoxyphenyl) acetaldehyde (P8-1). The reaction constants of the primary reactions for eugenol with OH and O3 under the temperature range of 225- 375 K were successively calculated by POLYRATE and MESMER program. At 298 K and 1 atm, the respective rate coefficients are 5.91 × 10-11 and 5.48 × 10-16 cm3 molecule-1 s-1 and the corresponding atmospheric lifetimes are 4.70 h and 0.72 h. The short lifetimes suggest that once eugenol enters the atmosphere, it is likely to be rapidly degraded. This work aims to provide theoretical guidance for the photochemical reaction mechanisms of eugenol with OH and O3, and present a reference for more experimental researches.
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Chen TY, Chen J, Tang Y, Zhou J, Guo Y, Chang WC. Current Understanding toward Isonitrile Group Biosynthesis and Mechanism. CHINESE J CHEM 2021; 39:463-472. [PMID: 34658601 PMCID: PMC8519408 DOI: 10.1002/cjoc.202000448] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Accepted: 09/21/2020] [Indexed: 12/20/2022]
Abstract
Isonitrile group has been identified in many natural products. Due to the broad reactivity of N≡C triple bond, these natural products have valuable pharmaceutical potentials. This review summarizes the current biosynthetic pathways and the corresponding enzymes that are responsible for isonitrile-containing natural product generation. Based on the strategies utilized, two fundamentally distinctive approaches are discussed. In addition, recent progress in elucidating isonitrile group formation mechanisms is also presented.
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Ding Z, Yi Y, Wang W, Zhang Q. Atmospheric degradation of chrysene initiated by OH radical: A quantum chemical investigation. CHEMOSPHERE 2021; 263:128267. [PMID: 33297211 DOI: 10.1016/j.chemosphere.2020.128267] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 08/27/2020] [Accepted: 09/02/2020] [Indexed: 06/12/2023]
Abstract
Chrysene, a four-ring polycyclic aromatic hydrocarbon (PAH), is recalcitrant to biodegradation and persistent in the environment due to its low water solubility. Here, we investigated the atmospheric degradation process of chrysene initiated by OH radical in the presence of O2 and NOX using quantum chemical calculations. The reaction mechanisms were elucidated by density functional theory (DFT) at M06-2X/6-311++G(3df,2p)//M06-2X/6-311+G(d,p) level, and the kinetics calculations were conducted with Rice-Ramsperger-Kassel-Marcus (RRKM) theory. The results show that the oxidation products of atmospheric chrysene are oxygenated PAHs (OPAHs) and nitro-PAHs (NPAHs), including nitro-chrysene, hydroxychrysene, hydroxychrysenone, 11-benzo[a]fluorenone and dialdehydes. Most of the products have deleterious effects on the environment and human beings due to their acute toxicity, carcinogenicity and mutagenicity. The overall rate constant for the reaction of chrysene with OH radical is 4.48 × 10-11 cm3 molecule-1 s-1 and the atmospheric lifetime of chrysene determined by OH radical is 6.4 h. The present work provided a comprehensive understanding on the degradation mechanisms and kinetics of chrysene, which could help to clarify its atmospheric fate and environmental risks.
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Cordero FM, Brandi A. Synthesis of β-Lactams and β-Homoprolines by Fragmentative Rearrangement of 5-Spirocyclopropaneisoxazolidines Mediated by Acids. CHEM REC 2020; 21:284-294. [PMID: 33241920 DOI: 10.1002/tcr.202000136] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 11/10/2020] [Indexed: 11/12/2022]
Abstract
Azetidinones and β-amino acids serve as useful building blocks in synthetic organic chemistry and their structural motifs are often found in biologically active compounds. Due to the importance of these compounds, several synthetic strategies have been developed and availability of new synthetic approaches is highly desirable. In this account, we describe the development of an original method that allows the preparation of β-lactam and β-homoproline derivatives not easily accessible through traditional processes. The serendipitous discovery made in our lab in 2000 involved the formation of a β-lactam by heating a mixture of an alkylidenecyclopropane tethered to a formyl group with N-methylhydroxylamine hydrochloride. Investigation of the process resulted in disclosing an alternative synthetic method of azetidinones based on an acid induced fragmentative rearrangement of cycloadducts of nitrones with suitable methylenecyclopropane derivatives. Herein, the scope of this process is reviewed. In addition, both experimental and computational studies of the mechanism for this peculiar fragmentative rearrangement are presented.
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Hiraoka S, Takahashi S, Sato H. Coordination Self-Assembly Processes Revealed by Collaboration of Experiment and Theory: Toward Kinetic Control of Molecular Self-Assembly. CHEM REC 2020; 21:443-459. [PMID: 33241912 DOI: 10.1002/tcr.202000124] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Revised: 11/11/2020] [Accepted: 11/11/2020] [Indexed: 12/16/2022]
Abstract
The importance of the collaboration of experiment and theory has been proven in many examples in science and technology. Here, such a new example is shown in the investigation of molecular self-assembly process, which is a complicated multi-step chemical reaction occurring in the reaction network composed of a huge number of intermediates. An experimental method, QASAP (quantitative analysis of self-assembly process), developed by us and a numerical approach, NASAP (numerical analysis of self-assembly process), that analyzes the experimental data obtained by QASAP to draw detail molecular self-assembly pathways, which was also developed by us, are introduced, and their application to the investigation of Pd(II)-mediated coordination assemblies are presented. Further, the possibility of the prediction of the outcomes of molecular self-assembly by varying the reaction conditions is also demonstrated. Finally, a future direction in the field of artificial molecular self-assembly based on pathway-dependent self-assembly, that is, kinetic control of molecular self-assembly is discussed.
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Kohse-Höinghaus K. Combustion in the future: The importance of chemistry. PROCEEDINGS OF THE COMBUSTION INSTITUTE. INTERNATIONAL SYMPOSIUM ON COMBUSTION 2020; 38:S1540-7489(20)30501-0. [PMID: 33013234 PMCID: PMC7518234 DOI: 10.1016/j.proci.2020.06.375] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Revised: 05/18/2020] [Accepted: 06/28/2020] [Indexed: 06/11/2023]
Abstract
Combustion involves chemical reactions that are often highly exothermic. Combustion systems utilize the energy of chemical compounds released during this reactive process for transportation, to generate electric power, or to provide heat for various applications. Chemistry and combustion are interlinked in several ways. The outcome of a combustion process in terms of its energy and material balance, regarding the delivery of useful work as well as the generation of harmful emissions, depends sensitively on the molecular nature of the respective fuel. The design of efficient, low-emission combustion processes in compliance with air quality and climate goals suggests a closer inspection of the molecular properties and reactions of conventional, bio-derived, and synthetic fuels. Information about flammability, reaction intensity, and potentially hazardous combustion by-products is important also for safety considerations. Moreover, some of the compounds that serve as fuels can assume important roles in chemical energy storage and conversion. Combustion processes can furthermore be used to synthesize materials with attractive properties. A systematic understanding of the combustion behavior thus demands chemical knowledge. Desirable information includes properties of the thermodynamic states before and after the combustion reactions and relevant details about the dynamic processes that occur during the reactive transformations from the fuel and oxidizer to the products under the given boundary conditions. Combustion systems can be described, tailored, and improved by taking chemical knowledge into account. Combining theory, experiment, model development, simulation, and a systematic analysis of uncertainties enables qualitative or even quantitative predictions for many combustion situations of practical relevance. This article can highlight only a few of the numerous investigations on chemical processes for combustion and combustion-related science and applications, with a main focus on gas-phase reaction systems. It attempts to provide a snapshot of recent progress and a guide to exciting opportunities that drive such research beyond fossil combustion.
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Key Words
- 2M2B, 2-methyl-2-butene
- AFM, atomic force microscopy
- ALS, Advanced Light Source
- APCI, atmospheric pressure chemical ionization
- ARAS, atomic resonance absorption spectroscopy
- ATcT, Active Thermochemical Tables
- BC, black carbon
- BEV, battery electric vehicle
- BTL, biomass-to-liquid
- Biofuels
- CA, crank angle
- CCS, carbon capture and storage
- CEAS, cavity-enhanced absorption spectroscopy
- CFD, computational fluid dynamics
- CI, compression ignition
- CRDS, cavity ring-down spectroscopy
- CTL, coal-to-liquid
- Combustion
- Combustion chemistry
- Combustion diagnostics
- Combustion kinetics
- Combustion modeling
- Combustion synthesis
- DBE, di-n-butyl ether
- DCN, derived cetane number
- DEE, diethyl ether
- DFT, density functional theory
- DFWM, degenerate four-wave mixing
- DMC, dimethyl carbonate
- DME, dimethyl ether
- DMM, dimethoxy methane
- DRIFTS, diffuse reflectance infrared Fourier transform spectroscopy
- EGR, exhaust gas recirculation
- EI, electron ionization
- Emissions
- Energy
- Energy conversion
- FC, fuel cell
- FCEV, fuel cell electric vehicle
- FRET, fluorescence resonance energy transfer
- FT, Fischer-Tropsch
- FTIR, Fourier-transform infrared
- Fuels
- GC, gas chromatography
- GHG, greenhouse gas
- GTL, gas-to-liquid
- GW, global warming
- HAB, height above the burner
- HACA, hydrogen abstraction acetylene addition
- HCCI, homogeneous charge compression ignition
- HFO, heavy fuel oil
- HRTEM, high-resolution transmission electron microscopy
- IC, internal combustion
- ICEV, internal combustion engine vehicle
- IE, ionization energy
- IPCC, Intergovernmental Panel on Climate Change
- IR, infrared
- JSR, jet-stirred reactor
- KDE, kernel density estimation
- KHP, ketohydroperoxide
- LCA, lifecycle analysis
- LH2, liquid hydrogen
- LIF, laser-induced fluorescence
- LIGS, laser-induced grating spectroscopy
- LII, laser-induced incandescence
- LNG, liquefied natural gas
- LOHC, liquid organic hydrogen carrier
- LT, low-temperature
- LTC, low-temperature combustion
- MBMS, molecular-beam MS
- MDO, marine diesel oil
- MS, mass spectrometry
- MTO, methanol-to-olefins
- MVK, methyl vinyl ketone
- NOx, nitrogen oxides
- NTC, negative temperature coefficient
- OME, oxymethylene ether
- OTMS, Orbitrap MS
- PACT, predictive automated computational thermochemistry
- PAH, polycyclic aromatic hydrocarbon
- PDF, probability density function
- PEM, polymer electrolyte membrane
- PEPICO, photoelectron photoion coincidence
- PES, photoelectron spectrum/spectra
- PFR, plug-flow reactor
- PI, photoionization
- PIE, photoionization efficiency
- PIV, particle imaging velocimetry
- PLIF, planar laser-induced fluorescence
- PM, particulate matter
- PM10 PM2,5, sampled fractions with sizes up to ∼10 and ∼2,5 µm
- PRF, primary reference fuel
- QCL, quantum cascade laser
- RCCI, reactivity-controlled compression ignition
- RCM, rapid compression machine
- REMPI, resonance-enhanced multi-photon ionization
- RMG, reaction mechanism generator
- RON, research octane number
- Reaction mechanisms
- SI, spark ignition
- SIMS, secondary ion mass spectrometry
- SNG, synthetic natural gas
- SNR, signal-to-noise ratio
- SOA, secondary organic aerosol
- SOEC, solid-oxide electrolysis cell
- SOFC, solid-oxide fuel cell
- SOx, sulfur oxides
- STM, scanning tunneling microscopy
- SVO, straight vegetable oil
- Synthetic fuels
- TDLAS, tunable diode laser absorption spectroscopy
- TOF-MS, time-of-flight MS
- TPES, threshold photoelectron spectrum/spectra
- TPRF, toluene primary reference fuel
- TSI, threshold sooting index
- TiRe-LII, time-resolved LII
- UFP, ultrafine particle
- VOC, volatile organic compound
- VUV, vacuum ultraviolet
- WLTP, Worldwide Harmonized Light Vehicle Test Procedure
- XAS, X-ray absorption spectroscopy
- YSI, yield sooting index
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Fujimori S, Inoue S. Small Molecule Activation by Two-Coordinate Acyclic Silylenes. Eur J Inorg Chem 2020; 2020:3131-3142. [PMID: 32999589 PMCID: PMC7507849 DOI: 10.1002/ejic.202000479] [Citation(s) in RCA: 61] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Indexed: 02/05/2023]
Abstract
In recent decades, the chemistry of stable silylenes (R2Si:) has evolved significantly. The first major development in this chemistry was the isolation of a silicocene which is stabilized by the Cp* (Cp* = η5-C5Me5) ligand in 1986 and subsequently the isolation of a first N-heterocyclic silylene (NHSi:) in 1994. Since the groundbreaking discoveries, a large number of isolable cyclic silylenes and higher coordinated silylenes, i.e. Si(II) compounds with coordination number greater than two, have been prepared and the properties investigated. However, the first isolable two-coordinate acyclic silylene was finally reported in 2012. The achievements in the synthesis of acyclic silylenes have allowed for the utilization of silylenes in small molecule activation including inert H2 activation, a process previously exclusive to transition metals. This minireview highlights the developments in silylene chemistry, specifically two-coordinate acyclic silylenes, including experimental and computational studies which investigate the extremely high reactivity of the acyclic silylenes.
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68
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Lobayan RM, Bochicchio RC, Pérez Del Valle C. Topological population analysis and pairing/unpairing electron distribution evolution: Atomic B3 + cluster bending mode, a case study. J Mol Graph Model 2020; 100:107696. [PMID: 32763795 DOI: 10.1016/j.jmgm.2020.107696] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 06/26/2020] [Accepted: 07/12/2020] [Indexed: 12/01/2022]
Abstract
Local and non-local topological treatment of electronic distributions are applied to a simple out of equilibrium case of an electron-deficient three-atom cluster, B3+. The bending movement is described in detail through the onset and disappearance of critical points defining two kinds of molecular structures, characterizing a transition state (TS) and predicting two stable equilibrium geometries. All points in this rich evolution and the structural change in the out of equilibrium conformations has been featured and distinguished by the behavior of the population magnitudes and of the paired and unpaired electron densities within the non-local and local points of view of the topological formalism. The unpaired or electron hole density appears as relevant in both versions, the non-local or integrated one, in which it is sometimes called free-valence and also for its complementary counterpart, the local one, to describe and to quantify the interatomic interactions. The stability of the cluster B3+ is characterized in terms of a topologically defined ring structure and the highest total two- and three-center populations, thus showing the role of the geometry, the covalence, and the complex patterns. Consideration of the electron correlation effects constitutes the basement of the results gathered, thus displaying their influence in the formation and breaking of boron bonding interactions.
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69
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Sun Y, Chen X, Xu F, Wang X. Quantum chemical calculations on the mechanism and kinetics of ozone-initiated removal of p-coumaryl alcohol in the atmosphere. CHEMOSPHERE 2020; 253:126744. [PMID: 32302911 DOI: 10.1016/j.chemosphere.2020.126744] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 04/03/2020] [Accepted: 04/06/2020] [Indexed: 06/11/2023]
Abstract
p-Coumaryl alcohol (p-CMA), as the simplest lignin precursor, was determined in the process of lignin polymer degradation and wood smoke. However, its transformation and migration in the atmosphere have not been well clarified. In this work, the gas-phase reaction mechanisms and kinetic parameters of ozone-initiated removal of p-CMA were performed by using quantum chemical calculations. Seven primary addition reaction pathways were summarized. A more comprehensive and detailed reaction routes of the favorable Criegee intermediate (IM9) were presented, including the reactions with small molecules, as well as its own isomerization and decomposition reactions. p-Hydroxybenzaldehyde (P1) is the most dominant product in the further reactions of IM9 and the subsequent ozonolysis mechanisms of P1 also were elucidated. All thermodynamic calculations were investigated on the density functional theory (DFT) method at the M06-2X/6-311 + G (3df, 2p)//M06-2X/6-311 + G (d,p) level. The overall and individual rate constants have estimated by using the KiSThelP under typical atmospheric temperature (198-338 K) and pressure. The total rate constant is 3.37 × 10-16 cm3 molecule-1 s-1 at 298 K and 1 atm. In addition, the atmospheric lifetime of p-CMA by ozone-determined is 1.18 h under the average ozone concentration of 7 × 1011 molecules cm-3. The short lifetime indicates that the degradation processes of p-CMA determined by O3 cannot be ignored, especially in areas where the tip concentration of O3 molecules is high. The present study provides a synthetical investigation on ozonolysis of p-CMA for the first time and enriches our understanding of atmospheric oxidation processes of other lignin compounds.
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70
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Sredojević DN, Raju RK, Moncho S, Belić MR, Brothers EN. Computational investigation of cobalt and copper bis (oxothiolene) complexes as an alternative for olefin purification. J Mol Model 2020; 26:205. [PMID: 32651713 PMCID: PMC7351838 DOI: 10.1007/s00894-020-04445-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Accepted: 06/15/2020] [Indexed: 12/02/2022]
Abstract
Considering that olefins present a large volume feedstock, it is reasonable to expect that their purification is industrially critical. After the discovery of the nickel bis (dithiolene) complex Ni(S2C2(CF3)2)2 that exhibits electro-catalytic activity with olefins but tends to decompose by a competitive reaction route, related complexes have been explored experimentally and theoretically. In this paper, a computational examination is performed on differently charged cobalt and copper bis (oxothiolene) complexes [M (OSC2(CN)2)2] to test their potential applicability as the catalysts for olefin purification, using the simplest olefin, ethylene. Possible reaction pathways for ethylene addition on these complexes were explored, to determine whether some of these candidates can avoid the reaction route that leads to decomposition, which is distinctive from the nickel complex, and to form stable adducts that can subsequently release ethylene by reduction. Our calculations suggest that the neutral cobalt complex might be an alternative catalyst, because all its forms can bind ethylene to produce stable interligand adducts with moderate to low activation barriers, rather than to form intraligand adducts that lead to decomposition. The calculations also predict that these interligand adducts are capable of releasing ethylene upon reduction. In addition, it can produce the desired interligand adducts following two different reaction pathways, assigned as the direct and the indirect, with no need for anion species as co-catalysts, which is crucial for the nickel complex. Thus, the olefin purification process could be much simpler by using this catalyst.
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71
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Xu Z, Zhou Y, Sun Z, Zhang D, Huang Y, Gu S, Chen W. Understanding reactions and pore-forming mechanisms between waste cotton woven and FeCl 3 during the synthesis of magnetic activated carbon. CHEMOSPHERE 2020; 241:125120. [PMID: 31683447 DOI: 10.1016/j.chemosphere.2019.125120] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 10/12/2019] [Accepted: 10/13/2019] [Indexed: 06/10/2023]
Abstract
FeCl3 is a valuable iron salt used in the synthesis of magnetic waste cotton woven-based activated carbon. Although it has received extensive research attention, more information is required regarding its interactions with the carbon matrix. This systematic study describes the potential reactions of FeCl3 and waste cotton woven. First, the textural properties of waste cotton woven-based activated carbon synthesized under various conditions were investigated via element analysis, N2 sorption/desorption isotherms, and scanning electron microscopy. Then, the possible reaction mechanisms were deduced through various characterization methods. The results demonstrate that FeCl3 can lower the initial decomposition temperature of WCW to 135 °C and catalyze decarboxylation and decarbonylation at 100-330 °C to elevate the formation of microporous structures. Moreover, FeCl3 can also form Lewis acid sites at 330-700 °C and promote the cross-linking reaction to develop intricate microporous structures and carbonaceous materials with the synergistic effect of Fe3+ and Cl-. FeCl3 could be used as a template-like agent to form mesoporous structures. Meanwhile, it can also act as a magnetizer that Fe3O4 derived from the decomposition of FeCl3 would insert into the carbon matrix and combine with C-Cl to tailor the magnetic controllable activated carbon. Finally, we confirmed that extending the activation time could convert the structure of waste cotton woven-based activated carbon and increase the number of active sites, thereby further improving the catalytic properties of FeCl3 in pore formation.
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72
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Galvão ES, D'Azeredo Orlando MT, Santos JM, Lima AT. Uncommon chemical species in PM 2.5 and PM 10 and its potential use as industrial and vehicular markers for source apportionment studies. CHEMOSPHERE 2020; 240:124953. [PMID: 31574435 DOI: 10.1016/j.chemosphere.2019.124953] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2019] [Revised: 09/19/2019] [Accepted: 09/23/2019] [Indexed: 06/10/2023]
Abstract
Chemical characterization of PM2.5 and PM10 is important to identify potential compounds that induce biological responses that translate into cardio-respiratory health problems. This study shows the reliability of the use of crystalline phases, identified in samples from receptor sites, as source markers, helping researchers to infer the main sources of air pollution, even without the use of receptor models. PM2.5 and PM10 samples were collected at two sites in an urban industrialized region located at southeast of Brazil and analyzed by Synchrotron X-ray Diffraction to identify crystalline compounds. Results show 5 PM10 and PM2.5 species not previously reported in the literature. We propose reaction mechanisms for these species and identify specific sources for each crystalline phase found: BaTiO3 was found in PM10 receptor samples and proved to be a vehicular marker formed during brake action; maghemite (γ-Fe2O3), pyracmonite [(NH4)3Fe(SO4)3], ammonium perchlorate (NH3OHClO4) and potassium ferrate (K2Fe2O4) were found in PM2.5 proved to be markers of industrial activities. The crystalline phases found in PM samples from receptor sites and the mechanisms of reactions showed the reliability of the use of crystalline phases as source markers in the identification of potential sources of air pollution without misinterpretation of the likely source.
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73
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Wang Y, Qi K, Yu S, Jia G, Cheng Z, Zheng L, Wu Q, Bao Q, Wang Q, Zhao J, Cui X, Zheng W. Revealing the Intrinsic Peroxidase-Like Catalytic Mechanism of Heterogeneous Single-Atom Co-MoS 2. NANO-MICRO LETTERS 2019; 11:102. [PMID: 34138037 PMCID: PMC7770872 DOI: 10.1007/s40820-019-0324-7] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 10/05/2019] [Indexed: 05/20/2023]
Abstract
The single-atom nanozyme is a new concept and has tremendous prospects to become a next-generation nanozyme. However, few studies have been carried out to elucidate the intrinsic mechanisms for both the single atoms and the supports in single-atom nanozymes. Herein, the heterogeneous single-atom Co-MoS2 (SA Co-MoS2) is demonstrated to have excellent potential as a high-performance peroxidase mimic. Because of the well-defined structure of SA Co-MoS2, its peroxidase-like mechanism is extensively interpreted through experimental and theoretical studies. Due to the different adsorption energies of substrates on different parts of SA Co-MoS2 in the peroxidase-like reaction, SA Co favors electron transfer mechanisms, while MoS2 relies on Fenton-like reactions. The different catalytic pathways provide an intrinsic understanding of the remarkable performance of SA Co-MoS2. The present study not only develops a new kind of single-atom catalyst (SAC) as an elegant platform for understanding the enzyme-like activities of heterogeneous nanomaterials but also facilitates the novel application of SACs in biocatalysis.
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74
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Bordón AG, Pila AN, Profeta MI, Romero JM, Jorge LC, Jorge NL, Sainz-Díaz CI, Grand A, Hernández-Laguna A. Theoretical study of the gas-phase thermolysis reaction of 3,6-dimethyl-1,2,4,5-tetroxane. Methyl and axial-equatorial substitution effects. J Mol Model 2019; 25:217. [PMID: 31292745 DOI: 10.1007/s00894-019-4092-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 06/11/2019] [Indexed: 10/26/2022]
Abstract
Organic peroxides are interesting compounds with a broad range of properties from antimalarial and antimicrobial activities to explosive character. In this work the gas-phase thermolysis reaction mechanism of the 3,6-dimethyl-1,2,4,5-tetroxane (DMT) is studied by DFT calculations, considering axial-axial, axial-equatorial, and equatorial-equatorial position isomers. The critical points of the singlet (S) and triplet (T) potential energy surfaces (PES) are calculated. Three mechanisms are considered: i) S-concerted, ii) S-stepwise, and iii) T-stepwise. The first intermediate of the reaction through S-stepwise-PES is a diradical open structure, o, yielding, as products, two molecules of acetaldehyde and one of O2 in the S state. The S-stepwise-mechanism gives exothermic reaction energies (Er) in the three position isomers. The S-concerted mechanism yields very high activation energies (Ea) in comparison with those of the S-stepwise mechanism. In the T-stepwise mechanism, a triplet open structure (T-o) is first considered, yielding an Er 12 kcal mol-1 more exothermic than that of the S-mechanisms. The S-o and T-o are similar in structure and energies; therefore, a crossing from the S- to T-PES is produced at the o intermediate as a consequence of a spin-orbit coupling. The highest Ea is the first step after o intermediate, and thus it is considered the rate limiting step. Therefore, the Er at the T-PES is more in agreement with the Er of the exothermic experimental diperoxide products. Ea, Er, and O···O distances are studied as a function of the number of methyl groups and the position isomerization.
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75
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Tripodi GL, Correra TC, Angolini CFF, Ferreira BRV, Maître P, Eberlin MN, Roithová J. The Intermediates in Lewis Acid Catalysis with Lanthanide Triflates. European J Org Chem 2019; 2019:3560-3566. [PMID: 31680777 PMCID: PMC6813638 DOI: 10.1002/ejoc.201900171] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Indexed: 01/27/2023]
Abstract
Lanthanide triflates are effective Lewis acid catalysts in reactions involving carbonyl compounds due to their high oxophilicity and water stability. Despite the growing interest, the identity of the catalytic species formed in lanthanide catalysed reactions is still unknown. We have therefore used mass spectrometry and ion spectroscopy to intercept and characterize the intermediates in a reaction catalysed by ytterbium and dysprosium triflates. We were able to identify a number of lanthanide intermediates formed in a simple condensation reaction between a C‐acid and an aldehyde. Results show correlation between the reactivity of lanthanide complexes and their charge state and suggest that the triply charged complexes play a key role in lanthanide catalysed reactions. Spectroscopic data of the gaseous ions accompanied by theoretical calculations reveal that the difference between catalytic efficiencies of ytterbium and dysprosium ions can be explained by their different electrophilicity.
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