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Marcus MA, Westphal AJ, Fakra SC. Classification of Fe-bearing species from K-edge XANES data using two-parameter correlation plots. JOURNAL OF SYNCHROTRON RADIATION 2008; 15:463-468. [PMID: 18728317 DOI: 10.1107/s0909049508018293] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2008] [Accepted: 06/16/2008] [Indexed: 05/26/2023]
Abstract
Solid iron compounds are extremely common in the environment as well as in meteorites and comets. Fe K-edge XANES (X-ray absorption near-edge structure) measurements can be carried out quickly, theoretically allowing one to categorize many areas within a sample or set of samples in a short time. However, interpretation of such data is not straightforward unless one has the appropriate reference spectra, hence a way of classifying an unknown spectrum to a family group (trivalent, divalent, oxide, silicate etc.) is required. Methods of abstracting Fe XANES spectra to produce pairs of variables which, when plotted, cluster in distinct regions depending on the family are presented. For instance, divalent minerals fall in a different region than trivalent minerals, and sulfides in a different region than oxides.
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Courtin-Nomade A, Soubrand-Colin M, Marcus MA, Fakra SC. Evidence for the incorporation of lead into barite from waste rock pile materials. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2008; 42:2867-2872. [PMID: 18497136 DOI: 10.1021/es702822k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Because Pb is one of the most toxic elements and is found as a major contaminant in mining environments, this study aims to identify the distribution of this element in host phases issued from the alteration of mine wastes. The sampling location was a former mine near Oakland, California (USA). This mine was once a source of sulfide minerals from which sulfuric acid was made. The material discussed in this paper was collected in iron hardpans that were formed within the waste rock pile resulting from the excavation work. In most contaminated environments (soils, mine waste), secondary metal-bearing phases arising from alteration processes are usually fine-grained (from 10 microm to less than 1 microm) and highly heterogeneous, requiring the use of micron-scale techniques. We performed micro-Raman spectroscopy, microscanning X-ray diffraction (SXRD), and microextended X-ray near edge spectroscopy (XANES) to determine the relationships between Pb and a Ba/Fe-rich host phase. Micro-Raman spectroscopy suggests that Pb is preferentially incorporated into barite rather than goethite. Results from micro-Raman experiments show the high sensitivity of this analytical tool to the incorporation of Pb into barite by being especially sensitive to the variations of the S-O bond and showing the characteristic bands due to the contribution of Pb. This association is confirmed and is well-illustrated by micro-SXRD mineral species maps showing the correlation between Pb and barite. Microfocused XANES indicates that Pb is present as Pb2+, agreeing with the in situ physicochemical parameters.
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Gräfe M, Tappero RV, Marcus MA, Sparks DL. Arsenic speciation in multiple metal environments: I. Bulk-XAFS spectroscopy of model and mixed compounds. J Colloid Interface Sci 2008; 320:383-99. [DOI: 10.1016/j.jcis.2008.01.028] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2007] [Revised: 01/09/2008] [Accepted: 01/18/2008] [Indexed: 11/16/2022]
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Manceau A, Nagy KL, Marcus MA, Lanson M, Geoffroy N, Jacquet T, Kirpichtchikova T. Formation of metallic copper nanoparticles at the soil-root interface. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2008; 42:1766-72. [PMID: 18441833 DOI: 10.1021/es072017o] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Copper is an essential element in the cellular electron-transport chain, but as a free ion it can catalyze production of damaging radicals. Thus, all life forms attempt to prevent copper toxicity. Plants diminish excess copper in two structural regions: rare hyperaccumulators bind cationic copper to organic ligands in subaerial tissues, whereas widespread metal-tolerant plants segregate copper dominantly in roots by mechanisms thought to be analogous. Here we show using synchrotron microanalyses that common wetlands plants Phragmites australis and Iris pseudoacorus can transform copper into metallic nanoparticles in and near roots with evidence of assistance by endomycorrhizal fungi when grown in contaminated soil in the natural environment. Biomolecular responses to oxidative stress, similar to reactions used to abiotically synthesize Cu0 nanostructures of controlled size and shape, likely cause the transformation. This newly identified mode of copper biomineralization by plant roots under copper stress may be common in oxygenated environments.
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Yano J, Robblee J, Pushkar Y, Marcus MA, Bendix J, Workman JM, Collins TJ, Solomon EI, George SD, Yachandra VK. Polarized X-ray absorption spectroscopy of single-crystal Mn(V) complexes relevant to the oxygen-evolving complex of photosystem II. J Am Chem Soc 2007; 129:12989-3000. [PMID: 17918832 PMCID: PMC3976719 DOI: 10.1021/ja071286b] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
High-valent Mn-oxo species have been suggested to have a catalytically important role in the water splitting reaction which occurs in the Photosystem II membrane protein. In this study, five- and six-coordinate mononuclear Mn(V) compounds were investigated by polarized X-ray absorption spectroscopy in order to understand the electronic structure and spectroscopic characteristics of high-valent Mn species. Single crystals of the Mn(V)-nitrido and Mn(V)-oxo compounds were aligned along selected molecular vectors with respect to the X-ray polarization vector using X-ray diffraction. The local electronic structure of the metal site was then studied by measuring the polarization dependence of X-ray absorption near-edge spectroscopy (XANES) pre-edge spectra (1s to 3d transition) and comparing with the results of density functional theory (DFT) calculations. The Mn(V)-nitrido compound, in which the manganese is coordinated in a tetragonally distorted octahedral environment, showed a single dominant pre-edge peak along the MnN axis that can be assigned to a strong 3d(z(2))-4p(z) mixing mechanism. In the square pyramidal Mn(V)-oxo system, on the other hand, an additional peak was observed at 1 eV below the main pre-edge peak. This component was interpreted as a 1s to 3d(xz,yz) transition with 4px,y mixing, due to the displacement of the Mn atom out of the equatorial plane. The XANES results have been correlated to DFT calculations, and the spectra have been simulated using a TD (time-dependent)-DFT approach. The relevance of these results to understanding the mechanism of the photosynthetic water oxidation is discussed.
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81
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Sarret G, Isaure MP, Marcus MA, Harada E, Choi YE, Pairis S, Fakra S, Manceau A. Chemical forms of calcium in Ca,Zn- and Ca,Cd-containing grains excreted by tobacco trichomes. CAN J CHEM 2007. [DOI: 10.1139/v07-076] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Tobacco (Nicotiana tabacum L. cv. Xanthi) plants exposed to toxic levels of zinc and cadmium excrete metals through their leaf trichomes (epidermal hairs) as Zn,Ca- and Cd,Ca-containing grains. Little is known about the nature and formation mechanism of these precipitates. The chemical, crystalline, and noncrystalline compositions of individual grains produced by tobacco were studied by scanning electron microscopy coupled with energy dispersive X-ray analysis (SEM-EDX), micro-X-ray diffraction (µXRD), and calcium K-edge micro X-ray absorption near edge structure (µXANES) spectroscopy. Zinc is predominantly incorporated in calcite and cadmium in calcite and vaterite. Aragonite, which occurs occasionally, does not seem to contain trace metals. In addition to being precipitated in its three possible polymorphic forms, calcite, aragonite, and vaterite, calcium is also speciated as amorphous CaCO3 and possibly organic Ca in some grains. Most often, a particular grain consists of two or more crystalline and noncrystalline phases. The observed variability of intra- and inter-grain elemental and phase composition suggests that this biomineralization process is not constrained by biological factors but instead results from thermodynamically and kinetically controlled reactions. This study illustrates the potential of laterally resolved X-ray synchrotron radiation techniques (µXRD and µXANES) to study biomineralization and metal immobilization processes in plants.Key words: biomineralization, detoxification, micro-XANES, micro-XRD.
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Chan EM, Marcus MA, Fakra S, ElNaggar M, Mathies RA, Alivisatos AP. Millisecond Kinetics of Nanocrystal Cation Exchange Using Microfluidic X-ray Absorption Spectroscopy. J Phys Chem A 2007; 111:12210-5. [PMID: 17887656 DOI: 10.1021/jp073474u] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We describe the use of a flow-focusing microfluidic reactor to measure the kinetics of the CdSe-to-Ag2Se nanocrystal cation exchange reaction using micro-X-ray absorption spectroscopy (microXAS). The small microreactor dimensions facilitate the millisecond mixing of CdSe nanocrystals and Ag+ reactant solutions, and the transposition of the reaction time onto spatial coordinates enables the in situ observation of the millisecond reaction using microXAS. Selenium K-edge absorption spectra show the progression of CdSe nanocrystals to Ag2Se over the course of 100 ms without the presence of long-lived intermediates. These results, along with supporting stopped-flow absorption experiments, suggest that this nanocrystal cation exchange reaction is highly efficient and provide insight into how the reaction progresses in individual particles. This experiment illustrates the value and potential of in situ microfluidic X-ray synchrotron techniques for detailed studies of the millisecond structural transformations of nanoparticles and other solution-phase reactions in which diffusive mixing initiates changes in local bond structures or oxidation states.
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Cabot A, Puntes VF, Shevchenko E, Yin Y, Balcells L, Marcus MA, Hughes SM, Alivisatos AP. Vacancy coalescence during oxidation of iron nanoparticles. J Am Chem Soc 2007. [PMID: 17676738 DOI: 10.1021/ja072574a/suppl_file/ja072574asi20070723_122555.pdf] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/23/2023]
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Cabot A, Puntes VF, Shevchenko E, Yin Y, Balcells L, Marcus MA, Hughes SM, Alivisatos AP. Vacancy coalescence during oxidation of iron nanoparticles. J Am Chem Soc 2007; 129:10358-60. [PMID: 17676738 DOI: 10.1021/ja072574a] [Citation(s) in RCA: 275] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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85
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Werner ML, Nico PS, Marcus MA, Anastasio C. Use of micro-XANES to speciate chromium in airborne fine particles in the Sacramento Valley. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2007; 41:4919-24. [PMID: 17711203 DOI: 10.1021/es070430q] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
While particulate matter (PM) in the atmosphere can lead to a wide array of negative health effects, the cause of toxicity is largely unknown. One aspect of PM that likely affects health is the chemical composition, in particular the transition metals within the particles. Chromium is one transition metal of interest due to its two major oxidation states, with Cr(III) being much less toxic compared to Cr(VI). Using microfocused X-ray absorption near edge structure (micro-XANES), we analyzed the Cr speciation in fine particles (diameters < or = 2.5 microm) collected at three sites in the Sacramento Valley of northern California. The microfocused X-ray beam enables us to look at very small areas on the filter with a resolution of typically 5-7 micrometers. With XANES we are able to not only distinguish between Cr(VI) and Cr(III), but also to identify different types of Cr(III) and more reduced Cr species. At all of our sampling sites the main Cr species were Cr(III), with Cr(OH)3 or a Cr-Fe, chromite-like, phase being the dominant species. Cr(VI)-containing particles were found only in the most urban site. All three sites contained some reduced Cr species, either Cr(0) or Cr3C2, although these were minor components. This work demonstrates that micro-XANES can be used as a minimally invasive analytical tool to investigate the composition of ambient PM.
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86
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Arai Y, Marcus MA, Tamura N, Davis JA, Zachara JM. Spectroscopic evidence for uranium bearing precipitates in vadose zone sediments at the Hanford 300-area site. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2007; 41:4633-9. [PMID: 17695908 DOI: 10.1021/es062196u] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Uranium (U) solid-state speciation in vadose zone sediments collected beneath the former North Process Pond (NPP) in the 300 Area of the Hanford site (Washington) was investigated using multi-scale techniques. In 30 day batch experiments, only a small fraction of total U (approximately 7.4%) was released to artificial groundwater solutions equilibrated with 1% pCO2. Synchrotron-based micro-X-rayfluorescence spectroscopy analyses showed that U was distributed among at least two types of species: (i) U discrete grains associated with Cu and (ii) areas with intermediate U concentrations on grains and grain coatings. Metatorbernite (Cu[UO2]2[PO4]2 x 8H2O) and uranophane (Ca[UO2]2[SiO3(OH)]2 x 5H2O) at some U discrete grains, and muscovite at U intermediate concentration areas, were identified in synchrotron-based micro-X-ray diffraction. Scanning electron microscopy/energy dispersive X-ray analyses revealed 8-10 microm size metatorbernite particles that were embedded in C-, Al-, and Si-rich coatings on quartz and albite grains. In mu- and bulk-X-ray absorption structure (mu-XAS and XAS) spectroscopy analyses, the structure of metatorbernite with additional U-C and U-U coordination environments was consistently observed at U discrete grains with high U concentrations. The consistency of the mu- and bulk-XAS analyses suggests that metatorbernite may comprise a significant fraction of the total U in the sample. The entrapped, micrometer-sized metatorbernite particles in C-, Al-, and Si-rich coatings, along with the more soluble precipitated uranyl carbonates and uranophane, likely control the long-term release of U to water associated with the vadose zone sediments.
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Guo JH, Gupta A, Sharma P, Rao KV, Marcus MA, Dong CL, Guillen JMO, Butorin SM, Mattesini M, Glans PA, Smith KE, Chang CL, Ahuja R. X-ray spectroscopic study of the charge state and local ordering of room-temperature ferromagnetic Mn-doped ZnO. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2007; 19:172202. [PMID: 21690936 DOI: 10.1088/0953-8984/19/17/172202] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The charge state and local ordering of Mn doped into a pulsed laser deposited single-phase thin film of ZnO are investigated by using x-ray absorption spectroscopy at the O K-edge, Mn K-edge and L-edge, and x-ray emission spectroscopy at the O K-edge and Mn L-edge. This film is ferromagnetic at room temperature. EXAFS measurement shows that Mn(2+) replaces the Zn site in tetrahedral symmetry, and there is no evidence for either metallic Mn or MnO in the film. Upon Mn doping, the top of O 2p valence band extends into the bandgap, indicating additional charge carriers being created.
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Yuhas BD, Fakra S, Marcus MA, Yang P. Probing the local coordination environment for transition metal dopants in zinc oxide nanowires. NANO LETTERS 2007; 7:905-9. [PMID: 17335268 DOI: 10.1021/nl0626939] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
It is hypothesized that a highly ordered, relatively defect-free dilute magnetic semiconductor system should act as a weak ferromagnet. Transition-metal-doped ZnO nanowires, being single crystalline, single domain, and single phase, are used here as a model system for probing the local dopant coordination environments using X-ray absorption spectroscopy and diffraction. Our X-ray spectroscopic data clearly show that the dopant resides in a uniform environment, and that the doping does not induce a large degree of disorder in the nanowires. This homogeneous nature of the doping inside the oxide matrix correlates well with observed weakly ferromagnetic behavior of the nanowires.
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Jackson RE, Marcus MA, Gould F, Bradley JR, Van Duyn JW. Cross-resistance responses of CrylAc-selected Heliothis virescens (Lepidoptera: Noctuidae) to the Bacillus thuringiensis protein vip3A. JOURNAL OF ECONOMIC ENTOMOLOGY 2007; 100:180-6. [PMID: 17370826 DOI: 10.1603/0022-0493(2007)100[180:crochv]2.0.co;2] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
One susceptible and three Cry1Ac-resistant strains of tobacco budworm, Heliothis virescens (F.) (Lepidoptera: Noctuidae), were used in laboratory studies to determine the level of cross-resistance between the Bacillus thuringiensis (Berliner) toxins Cry1Ac and Vip3A by using concentration-mortality and leaf tissue experiments. Concentration-mortality data demonstrated that the three Cry1Ac-resistant H. virescens strains, YHD2, KCBhyb, and CxC, were at least 215- to 316-fold resistant to Cry1Ac compared with the susceptible strain, YDK. Results from Vip3A concentration-mortality tests indicated that mortality was similar among all four H. virescens strains. Relative larval growth on Cry1Ac reflected concentration-mortality test results, because YHD2 larval growth was mostly unaffected by the Cry1Ac concentrations tested. Growth ratios for KCBhyb and CXC indicated that they had a more moderate level of resistance to Cry1Ac than did YHD2. Relative larval growth on Vip3A was highly variable at lower concentrations, but it was more consistent on concentrations of Vip3A above 25 microg/ml. Differences in larval growth among strains on Vip3A were not as pronounced as seen in Cry1Ac experiments. Mortality and larval growth also was assessed in leaf tissue bioassays in which YDK, CxC, and KCBhyb neonates were placed onto leaf disks from non-Bt and Bt cotton, Gossypium hirsutum L., for 5 d. Three Bt lines were used in an initial bioassay and consisted of two Vip3A-containing lines, COT203 and COT102, and a Cry1Ac-producing line. Mortality of KCBhyb and CXC was lower than that of YDK larvae in the presence of leaf tissue from the Cry1Ac-producing line. Additionally, increased larval growth and leaf tissue consumption on Cry1Ac-containing leaf disks was observed for KCBhyb and CXC. Mortality and larval weights were similar among strains when larvae were fed leaf tissue of either non-Bt, COT203, or COT102. A subsequent leaf tissue bioassay was conducted that evaluated four cotton lines: non-Bt, Cry1Ab-expressing, Vip3A-expressing, and pyramided-toxin plants that produced both Cry1Ab and Vip3A. Mortality levels were similar among strains when fed non-Bt, Vip3A-expressing, or pyramided-toxin leaf tissues. Mortality was higher for YDK than for KCBhyb or CXC on Cry1Ab-expressing leaf tissues. No differences in larval weights were observed among strains for any genotype tested. Results of these experiments demonstrate that cross-resistance is nonexistent between CrylAc and Vip3A in H. virescens. Thus, the introduction of Vip3A-producing lines could delay Cry1Ac-resistance evolution in H. virescens, if these lines gain a significant share of the market.
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Tappero R, Peltier E, Gräfe M, Heidel K, Ginder-Vogel M, Livi KJT, Rivers ML, Marcus MA, Chaney RL, Sparks DL. Hyperaccumulator Alyssum murale relies on a different metal storage mechanism for cobalt than for nickel. THE NEW PHYTOLOGIST 2007; 175:641-654. [PMID: 17688581 DOI: 10.1111/j.1469-8137.2007.02134.x] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
The nickel (Ni) hyperaccumulator Alyssum murale has been developed as a commercial crop for phytoremediation/phytomining Ni from metal-enriched soils. Here, metal co-tolerance, accumulation and localization were investigated for A. murale exposed to metal co-contaminants. A. murale was irrigated with Ni-enriched nutrient solutions containing basal or elevated concentrations of cobalt (Co) or zinc (Zn). Metal localization and elemental associations were investigated in situ with synchrotron X-ray microfluorescence (SXRF) and computed-microtomography (CMT). A. murale hyperaccumulated Ni and Co (> 1000 microg g(-1) dry weight) from mixed-metal systems. Zinc was not hyperaccumulated. Elevated Co or Zn concentrations did not alter Ni accumulation or localization. SXRF images showed uniform Ni distribution in leaves and preferential localization of Co near leaf tips/margins. CMT images revealed that leaf epidermal tissue was enriched with Ni but devoid of Co, that Co was localized in the apoplasm of leaf ground tissue and that Co was sequestered on leaf surfaces near the tips/margins. Cobalt-rich mineral precipitate(s) form on leaves of Co-treated A. murale. Specialized biochemical processes linked with Ni (hyper)tolerance in A. murale do not confer (hyper)tolerance to Co. A. murale relies on a different metal storage mechanism for Co (exocellular sequestration) than for Ni (vacuolar sequestration).
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Freeman JL, Lindblom SD, Quinn CF, Fakra S, Marcus MA, Pilon-Smits EAH. Selenium accumulation protects plants from herbivory by Orthoptera via toxicity and deterrence. THE NEW PHYTOLOGIST 2007; 175:490-500. [PMID: 17635224 DOI: 10.1111/j.1469-8137.2007.02119.x] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
To investigate whether selenium (Se) accumulation in plants provides a chemical defense against generalist insect herbivores, the feeding preference and performance of a mix of orthopteran species were investigated. The selenium hyperaccumulator Stanleya pinnata and accumulator Brassica juncea were used in herbivory studies in the laboratory, and S. pinnata was also used in a manipulative field experiment. In laboratory studies, both crickets and grasshoppers avoided plants pretreated with selenate, while those given no choice died after eating leaves with elevated Se (447 +/- 68 and 230 +/- 68 microg Se g(-1) DW, respectively). B. juncea has previously been shown to accumulate selenate, while S. pinnata hyperaccumulates methyl-selenocysteine. Thus, these findings demonstrate that both inorganic and organic forms of selenium protect plants from herbivory. Grasshoppers fed S. pinnata contained methylselenocysteine in their midgut and absorbed this form into surrounding tissues. In a manipulative field experiment, methylselenocysteine protected S. pinnata from invertebrate herbivory and increased its long-term survival rate over an entire growth season. * In native habitats of selenium hyperaccumulators, orthopterans represent a major group of insect herbivores. Protection offered by organic selenium accumulation against these herbivores may have promoted the evolution of selenium hyperaccumulation in plants.
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Flynn GJ, Bleuet P, Borg J, Bradley JP, Brenker FE, Brennan S, Bridges J, Brownlee DE, Bullock ES, Burghammer M, Clark BC, Dai ZR, Daghlian CP, Djouadi Z, Fakra S, Ferroir T, Floss C, Franchi IA, Gainsforth Z, Gallien JP, Gillet P, Grant PG, Graham GA, Green SF, Grossemy F, Heck PR, Herzog GF, Hoppe P, Hörz F, Huth J, Ignatyev K, Ishii HA, Janssens K, Joswiak D, Kearsley AT, Khodja H, Lanzirotti A, Leitner J, Lemelle L, Leroux H, Luening K, Macpherson GJ, Marhas KK, Marcus MA, Matrajt G, Nakamura T, Nakamura-Messenger K, Nakano T, Newville M, Papanastassiou DA, Pianetta P, Rao W, Riekel C, Rietmeijer FJM, Rost D, Schwandt CS, See TH, Sheffield-Parker J, Simionovici A, Sitnitsky I, Snead CJ, Stadermann FJ, Stephan T, Stroud RM, Susini J, Suzuki Y, Sutton SR, Taylor S, Teslich N, Troadec D, Tsou P, Tsuchiyama A, Uesugi K, Vekemans B, Vicenzi EP, Vincze L, Westphal AJ, Wozniakiewicz P, Zinner E, Zolensky ME. Elemental compositions of comet 81P/Wild 2 samples collected by Stardust. Science 2006; 314:1731-5. [PMID: 17170294 DOI: 10.1126/science.1136141] [Citation(s) in RCA: 186] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
We measured the elemental compositions of material from 23 particles in aerogel and from residue in seven craters in aluminum foil that was collected during passage of the Stardust spacecraft through the coma of comet 81P/Wild 2. These particles are chemically heterogeneous at the largest size scale analyzed ( approximately 180 ng). The mean elemental composition of this Wild 2 material is consistent with the CI meteorite composition, which is thought to represent the bulk composition of the solar system, for the elements Mg, Si, Mn, Fe, and Ni to 35%, and for Ca and Ti to 60%. The elements Cu, Zn, and Ga appear enriched in this Wild 2 material, which suggests that the CI meteorites may not represent the solar system composition for these moderately volatile minor elements.
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Zolensky ME, Zega TJ, Yano H, Wirick S, Westphal AJ, Weisberg MK, Weber I, Warren JL, Velbel MA, Tsuchiyama A, Tsou P, Toppani A, Tomioka N, Tomeoka K, Teslich N, Taheri M, Susini J, Stroud R, Stephan T, Stadermann FJ, Snead CJ, Simon SB, Simionovici A, See TH, Robert F, Rietmeijer FJM, Rao W, Perronnet MC, Papanastassiou DA, Okudaira K, Ohsumi K, Ohnishi I, Nakamura-Messenger K, Nakamura T, Mostefaoui S, Mikouchi T, Meibom A, Matrajt G, Marcus MA, Leroux H, Lemelle L, Le L, Lanzirotti A, Langenhorst F, Krot AN, Keller LP, Kearsley AT, Joswiak D, Jacob D, Ishii H, Harvey R, Hagiya K, Grossman L, Grossman JN, Graham GA, Gounelle M, Gillet P, Genge MJ, Flynn G, Ferroir T, Fallon S, Fakra S, Ebel DS, Dai ZR, Cordier P, Clark B, Chi M, Butterworth AL, Brownlee DE, Bridges JC, Brennan S, Brearley A, Bradley JP, Bleuet P, Bland PA, Bastien R. Mineralogy and petrology of comet 81P/Wild 2 nucleus samples. Science 2006; 314:1735-9. [PMID: 17170295 DOI: 10.1126/science.1135842] [Citation(s) in RCA: 531] [Impact Index Per Article: 29.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The bulk of the comet 81P/Wild 2 (hereafter Wild 2) samples returned to Earth by the Stardust spacecraft appear to be weakly constructed mixtures of nanometer-scale grains, with occasional much larger (over 1 micrometer) ferromagnesian silicates, Fe-Ni sulfides, Fe-Ni metal, and accessory phases. The very wide range of olivine and low-Ca pyroxene compositions in comet Wild 2 requires a wide range of formation conditions, probably reflecting very different formation locations in the protoplanetary disk. The restricted compositional ranges of Fe-Ni sulfides, the wide range for silicates, and the absence of hydrous phases indicate that comet Wild 2 experienced little or no aqueous alteration. Less abundant Wild 2 materials include a refractory particle, whose presence appears to require radial transport in the early protoplanetary disk.
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Brownlee D, Tsou P, Aléon J, Alexander CMO, Araki T, Bajt S, Baratta GA, Bastien R, Bland P, Bleuet P, Borg J, Bradley JP, Brearley A, Brenker F, Brennan S, Bridges JC, Browning ND, Brucato JR, Bullock E, Burchell MJ, Busemann H, Butterworth A, Chaussidon M, Cheuvront A, Chi M, Cintala MJ, Clark BC, Clemett SJ, Cody G, Colangeli L, Cooper G, Cordier P, Daghlian C, Dai Z, D'Hendecourt L, Djouadi Z, Dominguez G, Duxbury T, Dworkin JP, Ebel DS, Economou TE, Fakra S, Fairey SAJ, Fallon S, Ferrini G, Ferroir T, Fleckenstein H, Floss C, Flynn G, Franchi IA, Fries M, Gainsforth Z, Gallien JP, Genge M, Gilles MK, Gillet P, Gilmour J, Glavin DP, Gounelle M, Grady MM, Graham GA, Grant PG, Green SF, Grossemy F, Grossman L, Grossman JN, Guan Y, Hagiya K, Harvey R, Heck P, Herzog GF, Hoppe P, Hörz F, Huth J, Hutcheon ID, Ignatyev K, Ishii H, Ito M, Jacob D, Jacobsen C, Jacobsen S, Jones S, Joswiak D, Jurewicz A, Kearsley AT, Keller LP, Khodja H, Kilcoyne ALD, Kissel J, Krot A, Langenhorst F, Lanzirotti A, Le L, Leshin LA, Leitner J, Lemelle L, Leroux H, Liu MC, Luening K, Lyon I, Macpherson G, Marcus MA, Marhas K, Marty B, Matrajt G, McKeegan K, Meibom A, Mennella V, Messenger K, Messenger S, Mikouchi T, Mostefaoui S, Nakamura T, Nakano T, Newville M, Nittler LR, Ohnishi I, Ohsumi K, Okudaira K, Papanastassiou DA, Palma R, Palumbo ME, Pepin RO, Perkins D, Perronnet M, Pianetta P, Rao W, Rietmeijer FJM, Robert F, Rost D, Rotundi A, Ryan R, Sandford SA, Schwandt CS, See TH, Schlutter D, Sheffield-Parker J, Simionovici A, Simon S, Sitnitsky I, Snead CJ, Spencer MK, Stadermann FJ, Steele A, Stephan T, Stroud R, Susini J, Sutton SR, Suzuki Y, Taheri M, Taylor S, Teslich N, Tomeoka K, Tomioka N, Toppani A, Trigo-Rodríguez JM, Troadec D, Tsuchiyama A, Tuzzolino AJ, Tyliszczak T, Uesugi K, Velbel M, Vellenga J, Vicenzi E, Vincze L, Warren J, Weber I, Weisberg M, Westphal AJ, Wirick S, Wooden D, Wopenka B, Wozniakiewicz P, Wright I, Yabuta H, Yano H, Young ED, Zare RN, Zega T, Ziegler K, Zimmerman L, Zinner E, Zolensky M. Comet 81P/Wild 2 Under a Microscope. Science 2006; 314:1711-6. [PMID: 17170289 DOI: 10.1126/science.1135840] [Citation(s) in RCA: 740] [Impact Index Per Article: 41.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The Stardust spacecraft collected thousands of particles from comet 81P/Wild 2 and returned them to Earth for laboratory study. The preliminary examination of these samples shows that the nonvolatile portion of the comet is an unequilibrated assortment of materials that have both presolar and solar system origin. The comet contains an abundance of silicate grains that are much larger than predictions of interstellar grain models, and many of these are high-temperature minerals that appear to have formed in the inner regions of the solar nebula. Their presence in a comet proves that the formation of the solar system included mixing on the grandest scales.
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Freeman JL, Quinn CF, Marcus MA, Fakra S, Pilon-Smits EAH. Selenium-Tolerant Diamondback Moth Disarms Hyperaccumulator Plant Defense. Curr Biol 2006; 16:2181-92. [PMID: 17113382 DOI: 10.1016/j.cub.2006.09.015] [Citation(s) in RCA: 78] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2006] [Revised: 08/31/2006] [Accepted: 09/02/2006] [Indexed: 10/23/2022]
Abstract
BACKGROUND Some plants hyperaccumulate the toxic element selenium (Se) to extreme levels, up to 1% of dry weight. The function of this intriguing phenomenon is obscure. RESULTS Here, we show that the Se in the hyperaccumulator prince's plume (Stanleya pinnata) protects it from caterpillar herbivory because of deterrence and toxicity. In its natural habitat, however, a newly discovered variety of the invasive diamondback moth (Plutella xylostella) has disarmed this elemental defense. It thrives on plants containing highly toxic Se levels and shows no oviposition or feeding deterrence, in contrast to related varieties. Interestingly, a Se-tolerant wasp (Diadegma insulare) was found to parasitize the tolerant moth. The insect's Se tolerance mechanism was revealed by X-ray absorption spectroscopy and liquid chromatography-mass spectroscopy, which showed that the Se-tolerant moth and its parasite both accumulate methylselenocysteine, the same form found in the hyperaccumulator plant, whereas related sensitive moths accumulate selenocysteine. The latter is toxic because of its nonspecific incorporation into proteins. Indeed, the Se-tolerant diamondback moth incorporated less Se into protein. Additionally, the tolerant variety sequestered Se in distinct abdominal areas, potentially involved in detoxification and larval defense to predators. CONCLUSIONS Although Se hyperaccumulation protects plants from herbivory by some invertebrates, it can give rise to the evolution of unique Se-tolerant herbivores and thus provide a portal for Se into the local ecosystem. In a broader context, this study provides insight into the possible ecological implications of using Se-enriched crops as a source of anti-carcinogenic selenocompounds and for the remediation of Se-polluted environments.
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Freeman JL, Zhang LH, Marcus MA, Fakra S, McGrath SP, Pilon-Smits EAH. Spatial imaging, speciation, and quantification of selenium in the hyperaccumulator plants Astragalus bisulcatus and Stanleya pinnata. PLANT PHYSIOLOGY 2006; 142:124-34. [PMID: 16920881 PMCID: PMC1557614 DOI: 10.1104/pp.106.081158] [Citation(s) in RCA: 169] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2006] [Accepted: 07/20/2006] [Indexed: 05/11/2023]
Abstract
Astragalus bisulcatus and Stanleya pinnata hyperaccumulate selenium (Se) up to 1% of plant dry weight. In the field, Se was mostly present in the young leaves and reproductive tissues of both hyperaccumulators. Microfocused scanning x-ray fluorescence mapping revealed that Se was hyperaccumulated in trichomes in young leaves of A. bisulcatus. None of 10 other elements tested were accumulated in trichomes. Micro x-ray absorption spectroscopy and liquid chromatography-mass spectrometry showed that Se in trichomes was present in the organic forms methylselenocysteine (MeSeCys; 53%) and gamma-glutamyl-MeSeCys (47%). In the young leaf itself, there was 30% inorganic Se (selenate and selenite) in addition to 70% MeSeCys. In young S. pinnata leaves, Se was highly concentrated near the leaf edge and surface in globular structures that were shown by energy-dispersive x-ray microanalysis to be mainly in epidermal cells. Liquid chromatography-mass spectrometry revealed both MeSeCys (88%) and selenocystathionine (12%) inside leaf edges. In contrast, both the Se accumulator Brassica juncea and the nonaccumulator Arabidopsis thaliana accumulated Se in their leaf vascular tissues and mesophyll cells. Se in hyperaccumulators appears to be mobile in both the xylem and phloem because Se-treated S. pinnata was found to be highly toxic to phloem-feeding aphids, and MeSeCys was present in the vascular tissues of a S. pinnata young leaf petiole as well as in guttation fluid. The compartmentation of organic selenocompounds in specific storage areas in the plant periphery appears to be a unique property of Se hyperaccumulators. The high concentration of Se in the plant periphery may contribute to Se tolerance and may also serve as an elemental plant defense mechanism.
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Sarret G, Harada E, Choi YE, Isaure MP, Geoffroy N, Fakra S, Marcus MA, Birschwilks M, Clemens S, Manceau A. Trichomes of tobacco excrete zinc as zinc-substituted calcium carbonate and other zinc-containing compounds. PLANT PHYSIOLOGY 2006; 141:1021-34. [PMID: 16731580 PMCID: PMC1489912 DOI: 10.1104/pp.106.082743] [Citation(s) in RCA: 85] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2006] [Revised: 04/28/2006] [Accepted: 05/22/2006] [Indexed: 05/09/2023]
Abstract
Tobacco (Nicotiana tabacum L. cv Xanthi) plants were exposed to toxic levels of zinc (Zn). Zn exposure resulted in toxicity signs in plants, and these damages were partly reduced by a calcium (Ca) supplement. Confocal imaging of intracellular Zn using Zinquin showed that Zn was preferentially accumulated in trichomes. Exposure to Zn and Zn + Ca increased the trichome density and induced the production of Ca/Zn mineral grains on the head cells of trichomes. These grains were aggregates of submicrometer-sized crystals and poorly crystalline material and contained Ca as major element, along with subordinate amounts of Zn, manganese, potassium, chlorine, phosphorus, silicon, and magnesium. Micro x-ray diffraction revealed that the large majority of the grains were composed essentially of metal-substituted calcite (CaCO3). CaCO3 polymorphs (aragonite and vaterite) and CaC2O4 (Ca oxalate) mono- and dihydrate also were identified, either as an admixture to calcite or in separate grains. Some grains did not diffract, although they contained Ca, suggesting the presence of amorphous form of Ca. The presence of Zn-substituted calcite was confirmed by Zn K-edge micro-extended x-ray absorption fine structure spectroscopy. Zn bound to organic compounds and Zn-containing silica and phosphate were also identified by this technique. The proportion of Zn-substituted calcite relative to the other species increased with Ca exposure. The production of Zn-containing biogenic calcite and other Zn compounds through the trichomes is a novel mechanism involved in Zn detoxification. This study illustrates the potential of laterally resolved x-ray synchrotron radiation techniques to study biomineralization and metal homeostasis processes in plants.
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Ryser AL, Strawn DG, Marcus MA, Fakra S, Johnson-Maynard JL, Möller G. Microscopically focused synchrotron X-ray investigation of selenium speciation in soils developing on reclaimed mine lands. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2006; 40:462-7. [PMID: 16468390 DOI: 10.1021/es051674i] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Chemical speciation determines Se solubility and therefore its bioavailability and potential for transport in the environment. In this study we investigated the speciation of Se in soil developed on reclaimed mine sites in the U.S. Western Phosphate Resource Area (WPRA) using micro-X-ray absorption near-edge structure (micro-XANES) spectroscopy and micro-X-ray fluorescence (micro-XRF) mapping. Selenium was nonuniformly distributed in the soils and positively correlated with Fe, Mn, Cu, Zn, and Ni. Sixteen points of interest (POI) from three soil samples were analyzed with micro-XANES spectroscopy. The XANES data indicated that Se is present in the soils in at least three oxidation states, Se(-II, 0), Se(IV), and Se(VI). Selenides or elemental Se dominated 7 of the 16 POI. Selenate was the dominant species at only one of the POI. The remaining eight POI were composed of both Se(IV) and Se(VI), with minor Se(-II, 0) contributions. The results of this research suggest that the reduced Se species in the soil parent material are oxidizing to Se(VI), one of the more mobile species of Se in the environment. This information can be used to better predict and manage Se availability in soils.
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Khalil M, Marcus MA, Smeigh AL, McCusker JK, Chong HHW, Schoenlein RW. Picosecond X-ray Absorption Spectroscopy of a Photoinduced Iron(II) Spin Crossover Reaction in Solution. J Phys Chem A 2005; 110:38-44. [PMID: 16392837 DOI: 10.1021/jp055002q] [Citation(s) in RCA: 154] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
In this study, we perform steady-state and time-resolved X-ray absorption spectroscopy (XAS) on the iron K-edge of [Fe(tren(py)3)](PF6)2 dissolved in acetonitrile solution. Static XAS measurements on the low-spin parent compound and its high-spin analogue, [Fe(tren(6-Me-py)3)](PF6)2, reveal distinct spectroscopic signatures for the two spin states in the X-ray absorption near-edge structure (XANES) and in the X-ray absorption fine structure (EXAFS). For the time-resolved studies, 100 fs, 400 nm pump pulses initiate a charge-transfer transition in the low-spin complex. The subsequent electronic and geometric changes associated with the formation of the high-spin excited state are probed with 70 ps, 7.1 keV, tunable X-ray pulses derived from the Advanced Light Source (ALS). Modeling of the transient XAS data reveals that the average iron-nitrogen (Fe-N) bond is lengthened by 0.21+/-0.03 A in the high-spin excited state relative to the ground state within 70 ps. This structural modification causes a change in the metal-ligand interactions as reflected by the altered density of states of the unoccupied metal orbitals. Our results constitute the first direct measurements of the dynamic atomic and electronic structural rearrangements occurring during a photoinduced FeII spin crossover reaction in solution via picosecond X-ray absorption spectroscopy.
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