A Compost Treatment Acts as a Suppressive Agent in Phytophthora capsici - Cucurbita pepo Pathosystem by Modifying the Rhizosphere Microbiota

Phytophthora capsici Leonian (PHC) is a filamentous pathogen oomycete that causes root, fruit, foliar and crown rot over a wide host range, including the economically and nutritionally important summer squash (Cucurbita pepo var. cylindrica L.) crop. PHC chemical control strategies are difficult to adopt, due to the limited number of registered chemicals that are permitted and the scalar harvest system. For these reasons, other strategies, such as the use of waste-based composts that can act as suppressive agents against several soilborne pathogens, have been studied intensively. It is well known that compost's microbiota plays an important role to confer its suppressive ability. In this study, four different composts were analyzed with both 16S rRNA gene and 18S rRNA gene real-time PCR amplification and with 26S gene amplicon-based sequencing; the total abundance of the bacterial and fungal communities was found to be higher compared to literature, thus confirming that the four composts were a good inoculum source for agricultural applications. The core mycobiota was mainly composed of 31 genera; nevertheless, it was possible to observe a clear predominance of the same few taxa in all the composts. The four composts were then tested, at different concentrations (1-10-20% v/v), to establish their ability to confer suppressiveness to the Phytophthora capsici (PHC) - Cucurbita pepo pathosystem in controlled greenhouse pot trials. A total of 12 compost mixtures were considered, and of these, one (Trichoderma-enriched compost at 10% v/v) was able to statistically reduce the disease incidence caused by PHC (by 50% compared to the untreated control). Hence, the microbiota composition of the most effective compost treatment was investigated and compared with untreated and chemical (metalaxyl) controls. Mycobiota sequencing showed genera differences between the three treatments, with relative abundances of several fungal genera that were significantly different among the samples. Moreover, PCA analyses clustered the compost treatment differently from the chemical and the untreated controls. These findings suggest that suppressive activity of a compost is strictly influenced by its microbiota and the applied dosage, but the ability to induce a shaping in the rhizosphere microbial composition is also required.

Mechanism of the Elution of Iron from a Slag-Compost Fertilizer for Restoring Seaweed Beds in Coastal Areas-Characteristic Changes of Steelmaking Slag and Humic Acids Derived from the Fertilizer during the Elution Process

The characteristic changes in steelmaking slag and humic acids (HAs) derived from a slag-compost fertilizer and their relation to the elution of Fe were evaluated in tank tests in Mashike, Hokkaido and Tsushima, Nagasaki. Analyses of iron, nitrogen and phosphate in the eluate, changes in the chemical states on the surface of the steelmaking slag, and the macro-structural features of the isolated HAs were investigated during the test. Temporal changes in Fe concentrations in the tanks were consistent with data collected in previous studies. Analyses of the surface by ⁵⁷Fe Mössbauer spectroscopy showed that the concentration of Fe²⁺ in the fertilizer decreased and the ratio of Fe³⁺ increased, indicating that Fe²⁺ was preferentially eluted from the slag surface. The yields of HAs were significantly decreased during the test when steelmaking slag was mixed with compost. Changes in the UV-vis absorptivities indicated that de-aromatization had occurred. These results indicate that microorganisms that were present under these experimental conditions became activated by the mixing of compost with steelmaking slag, and are closely related to the continuous elution of Fe. The residual Fe in the fertilizer after the tests was investigated by analyzing seawater and the levels of extractable Fe. The trends for extractable Fe concentrations were consistent with the results obtained by ⁵⁷Fe Mössbauer spectroscopy and UV-vis spectra.

[Effects of soil permeability improvement and purification of pollutants in urban green space under different matrix composition amendments]

Green land is important carrier in cities. We investigated the effects of soil permeability improvement and purification of pollutants under different matrix composition amendments in Xixian New Area, Shaanxi Province. Six materials, including biochar, vermiculite, perlite, compost, polyacrylamide (PAM) and coir, were mixed with basic materials that were composed of soil and sand (volume ratio of 4:4), and then incubated for 30 days. We analyzed bulk density, saturated hydraulic conductivity, saturated moisture, and total nitrogen (TN), total phosphorus (TP), chemical oxygen demand (COD), copper (Cu), zinc (Zn), cadmium (Cd) concentrations in pollutants. For biochar and compost with volume ratio of 0.5:1.5 (1) and 1:1 (2), 1%PAM application had the best effect on soil permeability (including bulk density, saturated hydraulic conductivity, and saturated moisture). The effect purification of TN and COD was better under the condition of biochar and compost (1) with 0.5% PAM amendment than that with 1% PAM amendment. Under biochar and compost (1) with 1%PAM treatment, the adsorption rate of Zn, Cd, Cu was 99.9%, 99.7%, and 97.2%, respectively. In general, biochar and compost (volume ratio of 0.5:1.5) with 1% PAM could be recommended as the media of the sponge city green land in Xixian New Area.

Revealing the Inner Dynamics of Fulvic Acid from Different Compost-Amended Soils through Microbial and Chemical Analyses

The formation of fulvic acid (FA), an aromatic compound, is affected by the compost amendment. This study aimed to assess the extent of the humification of FA in soil amended with seven different composts. Results showed that composts improved the FA concentration in soil. Parallel factor (PARAFAC) analysis, combined with hetero-two-dimensional correlation spectroscopy (hetero-2DCOS), indicated that the inner changes in FA components determined the evolution of mineralization. The diversity in the composts used and the dominant microbes present might be responsible for the evolution of different mechanisms of FA transformation. Structural equation models (SEMs) demonstrated that the FA components were transformed directly by microbes, or indirectly via changes in the total organic carbon (TOC) and total nitrogen (TN) contents, C:N ratio, humic substance (HS) levels, and humic acid (HA): FA ratio, which regulate the microbial community structure. Our results will be useful for improving the bioavailability of compost products and realizing sustainable utilization of the soil.

First azole-resistant Aspergillus fumigatus isolates with the environmental TR46 /Y121F/T289A mutation in Iran

Background

Azole resistance in Aspergillus fumigatus is an emerging problem and reported from all continents. As triazole antifungals are the mainstay of therapy in the management of invasive aspergillosis, azole‐resistant A fumigatus has become a major medical concern and with complicated clinical management.

Objective

Screening of environmental presence of azole‐resistant A fumigatus in Iran.

Methods

Compost from Northern Iran, collected between 2017 and 2018, was screened for the presence of azole‐resistant A fumigatus with azole‐containing agar. Phenotypic MICs were obtained from selected, molecularly confirmed isolates. cyp51A gene sequencing and genotyping of azole‐resistant isolates were done.

Results

Among 300 compost samples, three A fumigatus isolates had high voriconazole MICs (≥16 mg/L) and harboured the TR₄₆/Y121F/T289A mutation in the cyp51A gene. Microsatellite typing of these isolates showed that two strains had the same allele across all nine examined microsatellite loci and were genotypically related to Indian azole‐resistant strains. The other isolate had a different genotype.

Conclusion

This is the first report of A fumigatus with TR₄₆/Y121F/T289A mutation from the region. Monitoring and surveillance of antifungal susceptibility of clinical A fumigatus is warranted in Iran and elsewhere in the region.

Short-Term Nitrogen Fertilization Affects Microbial Community Composition and Nitrogen Mineralization Functions in an Agricultural Soil

Soil extracellular enzymes play a significant role in the N mineralization process. However, few studies have documented the linkage between enzyme activity and the microbial community that performs the function. This study examined the effects of inorganic and organic N fertilization on soil microbial communities and their N mineralization functions over 4 years. Soils were collected from silage corn field plots with four contrasting N treatments: control (no additional N), ammonium sulfate (AS; 100 and 200 kg of N ha^-1), and compost (200 kg of N ha^-1). Illumina amplicon sequencing was used to comprehensively assess the overall bacterial community (16S rRNA genes), bacterial ureolytic community (ureC), and bacterial chitinolytic community (chiA). Selected genes involved in N mineralization were also examined using quantitative real-time PCR and metagenomics. Enzymes (and marker genes) included protease (npr and sub), chitinase (chiA), urease (ureC), and arginase (rocF). Compost significantly increased diversity of overall bacterial communities even after one application, while ammonium fertilizers had no influence on the overall bacterial communities over four seasons. Bacterial ureolytic and chitinolytic communities were significantly changed by N fertilization. Compost treatment strongly elevated soil enzyme activities after 4 years of repeated application. Functional gene abundances were not significantly affected by N treatments, and they were not correlated with corresponding enzyme activities. N mineralization genes were recovered from soil metagenomes based on a gene-targeted assembly. Understanding how the structure and function of soil microbial communities involved with N mineralization change in response to fertilization practices may indicate suitable agricultural management practices that improve ecosystem services while reducing negative environmental consequences.IMPORTANCE Agricultural N management practices influence the enzymatic activities involved in N mineralization. However, specific enzyme activities do not identify the microbial species directly involved in the measured process, leaving the link between the composition of the microbial community and the production of key enzymes poorly understood. In this study, the application of high-throughput sequencing, real-time PCR, and metagenomics shed light on how the abundance and diversity of microorganisms involved in N mineralization respond to N management. We suggest that N fertilization has significantly changed bacterial ureolytic and chitinolytic communities.

Collection of ear corn residue and its utilization as a bulking agent for cow manure composting

This study examined the collection, storage, and utilization of ear corn residue as a bulking agent for composting. Ear corn residue left in fields was collected by a sequence of windrowing and round baling operations, which showed a collection efficiency of 53%-56%. More than 70% of the corn stalks had lengths shorter than 15 cm. The moisture content of corn residue collected in late October was approximately 58%; it decreased to 23% during storage. Dried corn residue was mixed with raw manure in two different ways, namely using complete mixing (CM) treatment or creating a bottom layer of residue, and a total of 3.4 t of the manure and ear corn residue mixture were composted using a pilot-scale composting apparatus. The results showed that the CM treatment resulted in higher temperature generation and produced less odorous and well-degraded compost after 2 months of composting, while the odorous compounds in the compost with corn residue as the bottom layer remained similar to those of the initial compost. To sufficiently utilize the advantages of the ear corn residue, thorough mixing of the corn residue with raw manure is preferable; this procedure produced well-degraded and safety compost in a shorter time period.

Analysis of Multiclass Antibiotics in Lettuce by Liquid Chromatography-Tandem Mass Spectrometry to Monitor Their Plant Uptake

The main entry routes of antibiotics in the environment are the application of organic wastes to improve soil quality and the irrigation with recycled water. Once in the environment, antibiotics can be introduced in the food chain through their uptake by crops. This paper describes the development of an analytical method based on ultrasound-assisted extraction for the determination of seven antibiotics in lettuce. The developed method was applied to evaluate antibiotic uptake by lettuce grown in pots fertilized with composted poultry litter doped with a mixture of antibiotics to reach a final concentration of 2.5 µg/g in soil. Lettuce were harvested after 21, 36, and 55 days. Five of the seven studied antibiotics were found in all samples. The highest uptake was found for lincomycin (51 ng/g fresh weight) followed by sulfamethoxazole (44 ng/g fresh weight) and sulfamethazine (21 ng/g fresh weight) in lettuce harvested after 21 days. An important decrease of their levels was observed after 36 days, but these levels remained similar after 55 days. Although levels found in lettuce were low, the presence of antibiotics demonstrates the need for further assessing food safety risks related with the use of soil amendments or irrigation water contaminated with antibiotics.

Calcium-Enriched Animal Manure Alleviates the Adverse Effects of Salt Stress on Growth, Physiology and Nutrients Homeostasis of Zea mays L

Soil salinity and sodicity are among the main problems for optimum crop production in areas where rainfall is not enough for leaching of salts out of the rooting zone. Application of organic and Ca-based amendments have the potential to increase crop yield and productivity under saline–alkaline soil environments. Based on this hypothesis, the present study was conducted to evaluate the potential of compost, Ca-based fertilizer industry waste (Ca-FW), and Ca-fortified compost (Ca-FC) to increase growth and yield of maize under saline–sodic soil conditions. Saline–sodic soil conditions with electrical conductivity (EC) levels (1.6, 5, and 10 dS m⁻¹) and sodium adsorption ratio (SAR) = 15, were developed by spiking soil with a solution containing NaCl, Na₂SO₄, MgSO₄, and CaCl₂. Results showed that soil salinity and sodicity significantly reduced plant growth, yield, physiological, and nutrient uptake parameters. However, the application of Ca-FC caused a remarkable increase in the studied parameters of maize at EC levels of 1.6, 5, and 10 dS m⁻¹ as compared to the control. In addition, Ca-FC caused the maximum decrease in Na⁺/K⁺ ratio in shoot up to 85.1%, 71.79%, and 70.37% at EC levels of 1.6, 5, and 10 dS m⁻¹, respectively as compared to the control treatment. Moreover, nutrient uptake (NPK) was also significantly increased with the application of Ca-FC under normal as well as saline–sodic soil conditions. It is thus inferred that the application of Ca-FC could be an effective amendment to enhance growth, yield, physiology, and nutrient uptake in maize under saline–sodic soil conditions constituting the novelty of this work.

Quick Analysis of Organic Amendments via Portable X-ray Fluorescence Spectrometry

The determination of heavy metals in soils and organic amendments, such as compost, manure, biofertilizer, and sludge, generally involves the digestion of samples with aqua regia, and the determination of those in the solution using various techniques. Portable X-ray fluorescence (PXRF) has many advantages in relation to traditional analytical techniques. However, PXRF determines the total elemental content and, until now, its use for the analysis of organic amendments has been limited. The objective of this work is the calibration of a PXRF instrument to determine the aqua regia-soluble elemental contents directly in solid samples of organic amendments. Our proposal will avoid the digestion step and the use of other laboratory techniques. Using a training set of samples, calibration functions were obtained that allow the determination of the aqua regia-soluble contents from the PXRF readings of total contents. The calibration functions (obtained by multiple linear regression) allowed the quantitative determination of the aqua regia-soluble contents of Fe, K, P, S, Zn, Cu, Pb, Sr, Cr, and Mn, as well as the organic matter content and a semi-quantitative assessment of Al, Ca, V, Ba, Ni, and As contents. The readings of Si, Fe, Al, Ca, K, or S were used as correction factors, indicating that the calibrations functions found are truly based on the chemical composition of the sample matrix. This study will allow a fast, cheap, and reliable field analysis of organic amendments and of other biomass-based materials.

Deep soil inventories reveal that impacts of cover crops and compost on soil carbon sequestration differ in surface and subsurface soils

Increasing soil organic carbon (SOC) via organic inputs is a key strategy for increasing long-term soil C storage and improving the climate change mitigation and adaptation potential of agricultural systems. A long-term trial in California's Mediterranean climate revealed impacts of management on SOC in maize-tomato and wheat-fallow cropping systems. SOC was measured at the initiation of the experiment and at year 19, at five depth increments down to 2 m, taking into account changes in bulk density. Across the entire 2 m profile, SOC in the wheat-fallow systems did not change with the addition of N fertilizer, winter cover crops (WCC), or irrigation alone and decreased by 5.6% with no inputs. There was some evidence of soil C gains at depth with both N fertilizer and irrigation, though high variation precluded detection of significant changes. In maize-tomato rotations, SOC increased by 12.6% (21.8 Mg C/ha) with both WCC and composted poultry manure inputs, across the 2 m profile. The addition of WCC to a conventionally managed system increased SOC stocks by 3.5% (1.44 Mg C/ha) in the 0-30 cm layer, but decreased by 10.8% (14.86 Mg C/ha) in the 30-200 cm layer, resulting in overall losses of 13.4 Mg C/ha. If we only measured soil C in the top 30 cm, we would have assumed an increase in total soil C increased with WCC alone, whereas in reality significant losses in SOC occurred when considering the 2 m soil profile. Ignoring the subsoil carbon dynamics in deeper layers of soil fails to recognize potential opportunities for soil C sequestration, and may lead to false conclusions about the impact of management practices on C sequestration.

100 Years Since Tolaas: Bacterial Blotch of Mushrooms in the 21st Century

Among the biotic constraints of common mushroom (Agaricus bisporus) production, bacterial blotch is considered the most important mushroom disease in terms of global prevalence and economic impact. Etiology and management of bacterial blotch has been a major concern since its original description in 1915. Although Pseudomonas tolaasii is thought to be the main causal agent, various Pseudomonas species, as well as organisms from other genera have been reported to cause blotch symptoms on mushroom caps. In this review, we provide an updated overview on the etiology, epidemiology, and management strategies of bacterial blotch disease. First, diversity of the causal agent(s) and utility of high throughput sequencing-based approaches in the precise characterization and identification of blotch pathogen(s) is explained. Further, due to the limited options for use of conventional pesticides in mushroom farms against blotch pathogen(s), we highlight the role of balanced threshold of relative humidity and temperature in mushroom farms to combat the disease in organic and conventional production. Additionally, we discuss the possibility of the use of biological control agents (either antagonistic mushroom-associated bacterial strains or bacteriophages) for blotch management as one of the sustainable approaches for 21^st century agriculture. Finally, we aim to elucidate the association of mushroom microbiome in cap development and productivity on one hand, and blotch incidence/outbreaks on the other hand.

The Characteristics of Carbon, Nitrogen and Sulfur Transformation During Cattle Manure Composting-Based on Different Aeration Strategies

This study aimed to investigate the characteristics of gaseous emission (methane-CH₄, carbon dioxide-CO₂, nitrous oxide-N₂O, nitric oxide-NO, hydrogen sulfide-H₂S and sulfur dioxide-SO₂) and the conservation of carbon (C), nitrogen (N), and sulfur (S) during cattle manure composting under different aeration strategies. Three aeration strategies were set as C60, C100, and I60, representing the different combinations of aeration method (continuous-C or intermittent-I) and aeration rate (60 or 100 L·min^-1·m^-3). Results showed that C, N, S mass was reduced by 48.8-53.1%, 29.8-35.9% and 19.6-21.9%, respectively, after the composing process. Among the three strategies, the intermittent aeration treatment I60 obtained the highest N₂O emissions, resulting in the highest N loss and greenhouse gas (GHG) emissions when the GHG emissions from power consumption were not considered. Within two continuous aeration treatments, lower aeration rates in C60 caused lower CO₂, N₂O, NO, and SO₂ emissions but higher CH₄ emissions than those from C100. Meanwhile, C and N losses were also lowest in the C60 treatment. H₂S emission was not detected because of the more alkaline pH of the compost material. Thus, C60 can be recommended for cattle manure composting because of its nutrient conservation and mitigation of major gas and GHG emissions.

Deinking sludge compost stability and maturity assessment using Fourier transform infrared spectroscopy and thermal analysis

Thermal composting is an important and useful way to transfer raw organic matter into value-added product rich in humic substances. Furthermore, thermal composting is a very promising way to reduce deinking paper sludge pollutions, which are difficult to remove. The objective of this study was to investigate the behaviour of the composting process of deinking paper sludge with poultry manure over 14 months. Two composts were used: C1 (70/30: deinking paper sludge/poultry manure) and C2 (50/50: deinking paper sludge/poultry manure). The compost stability and maturity were assessed via physico-chemical and thermal analyses: thermogravimetric analysis, differential thermal analysis and diffuse reflectance infrared Fourier transform spectroscopy. Diffuse reflectance infrared Fourier transform spectroscopy analysis provided chemical information for the presence of aromatic, phenolic, aliphatic and polysaccharidic structures. Thermogravimetry analyses revealed that both deinking paper sludge composts were rich in humic acids. The ratio E4/E6 (fulvic acids/humic acids) was also carried out to characterise the maturity index of composts. After 14 months, the compost C2 is more stable, mature and rich in humic acids than compost C1. Furthermore, the addition of poultry manure to the deinking paper sludge-based composts enhanced the formation of humic substances. From 0 to 14 months of composting, the concentration of polychlorinated biphenyls decreased from 0.2 to 0.1 mg kg^-1 and from 0.6 to 0.2 mg kg^-1 for C1 and C2, respectively.

Portable and Low-Cost Respirometric Microsystem for the Static and Dynamic Respirometry Monitoring of Compost

Composting is considered an option for the disposal of organic waste; however, the development of portable and low-cost systems for its monitoring is of high interest. Therefore, in this study, respirometric microsystems were designed and tested including two integrated oxygen sensors for the measurement of compost samples under static and dynamic conditions with high portability and ease of use. The cost of each sensor was calculated as 2 USD, while the cost of the whole respirometric microsystem was calculated as 6 USD. The electronic system for real-time monitoring was also designed and implemented. The designed systems were tested for over 6 weeks for the determination of compost quality using real samples. The respirometric microsystem was compared to a commercial respirometry system and a standard laboratory test using hierarchical analysis which included costs, portability accuracy, analysis time, and integration of new technologies. The analysis showed a global score of 6.87 for the respirometric microsystem compared to 6.70 for the standard laboratory test and 3.26 for the commercial system.

Highly sensitive analytical method for herbicide clopyralid residue in cattle manure compost with ultraperformance liquid chromatography tandem mass spectrometry

A micro liquid-liquid extraction has been applied to sample preparation in the current authorized method for clopyralid in compost. The method rendered matrix effects practically negligible during determination with ultraperformance liquid chromatography-electrospray ionization tandem mass spectrometry with an improved limit of quantification of 0.7 µg/kg dry weight. Moreover, it had good accuracy and reproducibility. Therefore, the method is proposed as a highly effective routine analytical technique for investigating the actual status of clopyralid residue in compost.

Emulsifiers from Partially Composted Olive Waste

Partial (one month) composting of solid olive processing waste is shown to produce extractable emulsifiers. Size exclusion chromatography (SEC) and Fourier-transform infra-red spectroscopy (FTIR) show that these consist of polysaccharides and proteins from the composted waste. Aqueous extraction at pH 5, pH 7, and pH 9 all yield extracts rich in oligosacchrides and oligopeptides which derive from the break-down of the macromolecules under composting, with the extract obtained at pH 5 being the richer in such components. Fourier-transform infra-red (FTIR) spectroscopy also confirms that these materials consist of proteinic and poly/oligosaccharidic populations. These materials can emulsify stable oil-in-water emulsions at pH 3 for a few days, while the same emulsions collapse in less than 24 h at pH 7. Confocal microscopy and droplet size distribution data suggest that Ostwald ripening, rather than coalescence, is the major course of emulsion instability. The above point to a short-process alternative to full composting in producing a high added value product from solid olive processing waste.

Application of Organic Fertilizers Affect the Citrus Leafminer, Phyllocnistis citrella (Lepidoptera: Gracillariidae) Infestation and Citrus Canker Disease in Nursery Plantations

Citrus leafminer (CLM), Phyllocnistis citrella Stainton (Lepidoptera: Gracillariidae), is one of the most important insect pests of Pakistan's citrus nursery stock and caused extensive damage to young flushes. The organic compost is a widespread technique used to manage insect pests and plant diseases. Different composts (biofert, tara root and vermicompost) at 0.5 and 0.25 kg/plant concentration in comparison to NPK fertilizer at 0.4 and 0.2 g/plant were evaluated for CLM infestation and the associated citrus canker disease in nursery plantations of Citrus reticulata Blanco. Application of biofert at 0.5 kg/plant reduced the CLM infestation up to 54.5% during Fall-2016 and 39.1% during Summer-2017 in comparison to control treatment. The CLM larval density was also found lower by the application of biofert followed by vermicompost during both seasons. Both concentrations of biofert followed by vermicompost at 0.5 kg/plant resulted in remarkable protection against citrus canker disease in both flushes. The incidence of canker associated with CLM infested leaves was also studied and found lower by the application of biofert and vermicompost compared with control treatment. Conclusively, the soil amendment using biofert and vermicompost affects the CLM population and canker infection in nursery plantations. These organic fertilizers can be used in future citrus IPM programs as a tool to suppress the CLM population and citrus canker disease.

Composting as a strategy to recycle aquatic animal waste: Case study of a research centre in São Paulo State, Brazil

Aquaculture is a fast-growing activity in Brazil and around the world, which generates large amounts of waste from fingerling production to the final consumer. Among several possibilities for the management of these wastes, windrow composting stands out as a simple and low-cost method. In this study, 16 composting piles were assembled with wood shavings and peanut shells and managed according to two methods; one with carcasses recharges and another without. A description of the daily occurrences and management details were made. Temperature and moisture content were monitored and at the end of the decomposition process, and after 60 and 100 days of curing, physic-chemical analysis was performed to assess composts quality. A germination index test was performed to assess composts phytotoxicity. All piles exceeded 55 °C for more than 15 days (with the aid of turnings) and germination indices were above 50% for both lettuce and cress seeds. Total nitrogen concentration among composts varied from 22.1 to 33.2 g kg^-1 and carbon:nitrogen ratios were below 20, while pH values were above 6.0 in all composts. Curing composts for 60 and 100 days did not influence any of the physic-chemical characteristics of all composts, so this practice can be dodged, thus avoiding unnecessary land use and increasing production costs. The type of management adopted for carcasses of aquatic animals influenced total and inorganic nitrogen, C/N ratio, organic matter and pH values of the composts, being recommended the recharge of carcasses to improve composts stability and quality.

Use of raw and composted poultry litter in lettuce produced under field conditions: microbiological quality and safety assessment

Lettuce (Lactuca sativa L.) constitutes one the most important vegetable crops worldwide. Poultry litter is being applied as an economically suitable alternative to nitrogen fertilizers in lettuce cultivation. However, little is known about the effects of this practice over this fresh product safety that is usually consumed as a salad. The aim of this work was to determine the microbiological quality and the nitrate content in lettuce produced, under field conditions, using either raw or composted poultry litter, coming from the same original batch. Two experiments were conducted in the experimental field of Facultad de Ciencias Agrarias (UNL, Santa Fe, Argentina) to assess the effects of recently extracted poultry litter that consisted of broiler chicken manure plus rice husk, or composted for 12 mo. The application amounts were: 20 T ha-1 (T1); 40 T ha-1 (T2); and no application of manure (T). Increasing the applied quantities had also increased the health risk associated with lettuce consumption, due to higher nitrate levels and microbial contamination. However, these risks were reduced by composting the material. Even when lettuce contamination with faecal bacteria was mainly due to the use of poultry litter, the number and incidence of pathogens were reduced when properly composted manure was applied instead of raw one. Increasing the dose of poultry litter applied also increases the health risk in lettuce. Though, when the material is properly composted, its fertilizing capacity is maintained, giving proper yields with lower nitrate levels and microbial contamination by enterobacteria.

Biofilm Formation and Synthesis of Antimicrobial Compounds by the Biocontrol Agent Bacillus velezensis QST713 in an Agaricus bisporus Compost Micromodel

Bacillus velezensis QST713 is widely used as a biological control agent for crop protection and disease suppression. This strain is used industrially in France for the protection of Agaricus bisporus against Trichoderma aggressivum f. europaeum, which causes green mold disease. The efficacy of this biocontrol process was evaluated in a previous study, yet the mode of its action has not been explored under production conditions. In order to decipher the underlying biocontrol mechanisms for effective biofilm formation by strain QST713 in the compost and for the involvement of antimicrobial compounds, we developed a simplified micromodel for the culture of A. bisporus during its early culture cycle. By using this micromodel system, we studied the transcriptional response of strain QST713 in the presence or absence of A. bisporus and/or T. aggressivum in axenic industrial compost. We report the overexpression of several genes of the biocontrol agent involved in biofilm formation in the compost compared to their expression during growth in broth compost extract either in the exponential growth phase (the epsC, blsA, and tapA genes) or in the stationary growth phase (the tapA gene), while a gene encoding a flagellar protein (hag) was underexpressed. We also report the overexpression of Bacillus velezensis QST713 genes related to surfactin (srfAA) and fengycin (fenA) production in the presence of the fungal pathogen in the compost.IMPORTANCE Biocontrol agents are increasingly used to replace chemical pesticides to prevent crop diseases. In the button mushroom field in France, the use of Bacillus velezensis QST713 as a biocontrol agent against the green mold Trichoderma aggressivum has been shown to be efficient. However, the biocontrol mechanisms effective in the Agaricus bisporus/Trichoderma aggressivum/Bacillus velezensis QST713 pathosystem are still unknown. Our paper focuses on the exploration of the bioprotection mechanisms of the biocontrol agent Bacillus velezensis QST713 during culture of the button mushroom (Agaricus bisporus) in a micromodel culture system to study the specific response of strain QST713 in the presence of T. aggressivum and/or A. bisporus.

Effect of Organic Inputs and Solarization for the Suppression of Rhizoctonia solani in Woody Ornamental Plant Production

Soilborne diseases are the most economically significant problem faced by Southern region nursery producers. The goal of this research was to improve Rhizoctonia root rot disease management through the use of soil solarization alone and in combination with biofumigant cover crops-arugula 'Astro' (Eruca vesicaria ssp. sativa), mustard green 'Amara' (Brassica carinata), and turnip 'Purple top forage' (B. rapa); good quality compost and mustard meal amendment. The experiments were established as on-farm trials in 2016 and 2017 with prevalent Rhizoctonia solani population in propagation beds. All three biofumigant cover crops, arugula 'Astro', mustard green 'Amara', and turnip 'Purple top forage' in combination with solarization were able to reduce the Rhizoctonia root rot in flowering cherry 'Kwanzan' plants in nursery propagation beds. Compost amendment increased the flowering cherry rooted cuttings growth (plant weight, root weight, and plant height) compared to other treatments. Soil solarization in combination with cover crops and organic inputs could be used as part of an integrated approach to manage Rhizoctonia root rot in nursery crop propagation beds.

Effects of Dairy Manure-Based Amendments and Soil Texture on Lettuce- and Radish-Associated Microbiota and Resistomes

Dairy cattle are routinely treated with antibiotics, and the resulting manure or composted manure is commonly used as a soil amendment for crop production, raising questions regarding the potential for antibiotic resistance to propagate from "farm to fork." The objective of this study was to compare the microbiota and "resistomes" (i.e., carriage of antibiotic resistance genes [ARGs]) associated with lettuce leaf and radish taproot surfaces grown in different soils amended with dairy manure, compost, or chemical fertilizer only (control). Manure was collected from antibiotic-free dairy cattle (DC) or antibiotic-treated dairy cattle (DA), with a portion composted for parallel comparison. Amendments were applied to loamy sand or silty clay loam, and lettuce and radishes were cultivated to maturity in a greenhouse. Metagenomes were profiled via shotgun Illumina sequencing. Radishes carried a distinct ARG composition compared to that of lettuce, with greater relative abundance of total ARGs. Taxonomic species richness was also greater for radishes by 1.5-fold. The resistomes of lettuce grown with DC compost were distinct from those grown with DA compost, DC manure, or fertilizer only. Further, compost applied to loamy sand resulted in twofold-greater relative abundance of total ARGs on lettuce than when applied to silty clay loam. The resistomes of radishes grown with biological amendments were distinct from the corresponding fertilizer controls, but effects of composting or antibiotic use were not measureable. Cultivation in loamy sand resulted in higher species richness for both lettuce and radishes than when grown in silty clay loam by 2.2-fold and 1.2-fold, respectively, when amended with compost.IMPORTANCE A controlled, integrated, and replicated greenhouse study, along with comprehensive metagenomic analysis, revealed that multiple preharvest factors, including antibiotic use during manure collection, composting, biological soil amendment, and soil type, influence vegetable-borne resistomes. Here, radishes, a root vegetable, carried a greater load of ARGs and species richness than lettuce, a leafy vegetable. However, the lettuce resistome was more noticeably influenced by upstream antibiotic use and composting. Network analysis indicated that cooccurring ARGs and mobile genetic elements were almost exclusively associated with conditions receiving raw manure amendments, suggesting that composting could alleviate the mobility of manure-derived resistance traits. Effects of preharvest factors on associated microbiota and resistomes of vegetables eaten raw are worthy of further examination in terms of potential influence on human microbiomes and spread of antibiotic resistance. This research takes a step toward identifying on-farm management practices that can help mitigate the spread of agricultural sources of antibiotic resistance.

Thermal resistance of Clostridium difficile endospores in dairy compost upon exposure to wet and dry heat treatments

AIM

Thermal resistance of Clostridium difficile endospores in finished dairy compost was compared at 55 and 65°C under wet and dry heat conditions.

METHODS AND RESULTS

A three-strain cocktail of C. difficile endospores was inoculated into dairy compost to a final concentration of c. 5·5 log CFU per gram and the moisture content (MC) of the compost was adjusted to be 20, 30 and 40%. For the dry heat treatment at 55 and 65°C, the compost samples were placed in an environmental chamber, whereas for the wet heat treatment, the inoculated compost samples were placed in a tray submerged in a water bath. The MCs of composts were maintained well throughout the wet heat treatment while the dry heat treatment reduced the MCs of composts to <10% by the end of come-up time. During the come-up time, the log endospore reductions at a selected temperature were not significantly different in compost with three selected MCs, in each heat treatment. During the holding time, endospore counts reduced by <0·5 log CFU per gram at 55 and 65°C of dry heat treatment, whereas 0·7-0·8 and 0·6-3·0 log CFU per gram reductions were observed at 55 and 65°C in wet heat treatment respectively.

CONCLUSION

The recommended minimum composting guidelines were not sufficient to reduce C. difficile endospore counts to an undetectable level (five endospores per gram). Increasing the temperature of thermophilic phase to 65°C, and maintaining higher MCs of composting feedstocks have significant (P < 0·05) effects on the endospore inactivation.

SIGNIFICANCE AND IMPACT OF THE STUDY

Our study identified factors that significantly affecting the thermal resistance of C. difficile endospores during composting, and the results suggest the current composting guidelines need to be amended in order to reduce the dissemination of C. difficile endospores in agricultural environment.

Current Scenario of the Tehran Municipal Solid Waste Handling Rules towards Green Technology

This study aims to study the waste management process and recycling of municipal waste in Tehran. Currently, Kahrizak is the defined landfill area which collects the waste generated from 22 districts of Tehran. The organic wastes undergo to the windrow composting method in order to manage the partial of the waste generated in the city. Samples from the compost pile generated in Kahrizak were examined to evaluate its fertilizer value to be used further by the farmers. The results show that the obtained compost does not reach the acceptable quality to be used further in agriculture, due to lack of homogeneity, aeration and presence of heavy metals. Overall, it has been concluded that, due to the improper waste segregation and management prior to sending to landfill and presence of non-organic materials such as hazardous metals and medical wastes, causes difficulties in proper waste management, implementation and producing high quality compost. Based on this study the existence of stakeholders, society, economy and proper handling rules can effectively improve the waste management system in the country and leads to the sustainable green environment.