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Cernatic F, Fromager E. Extended N-centered ensemble density functional theory of double electronic excitations. J Comput Chem 2024; 45:1945-1962. [PMID: 38700389 DOI: 10.1002/jcc.27387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Revised: 04/12/2024] [Accepted: 04/19/2024] [Indexed: 05/05/2024]
Abstract
A recent work (arXiv:2401.04685) has merged N-centered ensembles of neutral and charged electronic ground states with ensembles of neutral ground and excited states, thus providing a general and in-principle exact (so-called extended N-centered) ensemble density functional theory of neutral and charged electronic excitations. This formalism made it possible to revisit the concept of density-functional derivative discontinuity, in the particular case of single excitations from the highest occupied Kohn-Sham (KS) molecular orbital, without invoking the usual "asymptotic behavior of the density" argument. In this work, we address a broader class of excitations, with a particular focus on double excitations. An exact implementation of the theory is presented for the two-electron Hubbard dimer model. A thorough comparison of the true physical ground- and excited-state electronic structures with that of the fictitious ensemble density-functional KS system is also presented. Depending on the choice of the density-functional ensemble as well as the asymmetry of the dimer and the correlation strength, an inversion of states can be observed. In some other cases, the strong mixture of KS states within the true physical system makes the assignment "single excitation" or "double excitation" irrelevant.
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Affiliation(s)
- Filip Cernatic
- Laboratoire de Chimie Quantique, Institut de Chimie, CNRS/Université de Strasbourg, Strasbourg, France
| | - Emmanuel Fromager
- Laboratoire de Chimie Quantique, Institut de Chimie, CNRS/Université de Strasbourg, Strasbourg, France
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2
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Slattery SA, Yon JC, Valeev EF. Revisiting Artifacts of Kohn-Sham Density Functionals for Biosimulation. J Chem Theory Comput 2024; 20:6652-6660. [PMID: 39083031 PMCID: PMC11325537 DOI: 10.1021/acs.jctc.4c00712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
We revisit the problem of unphysical charge density delocalization/fractionalization induced by the self-interaction error of common approximate Kohn-Sham (KS) density functional theory functionals on simulation of small to medium-sized proteins in a vacuum. Aside from producing unphysical electron densities and total energies, the vanishing of the HOMO-LUMO gap associated with the unphysical charge delocalization leads to an unphysical low-energy spectrum and catastrophic failure of most popular solvers for the KS self-consistent field (SCF) problem. We apply a robust quasi-Newton SCF solver [ Phys. Chem. Chem. Phys. 2024, 26, 6557] to obtain solutions for some of these difficult cases. The anatomy of the charge delocalization is revealed by the natural deformation orbitals obtained from the density matrix difference between the Hartree-Fock and KS solutions; the charge delocalization not only can occur between charged fragments (such as in zwitterionic polypeptides) but also involves neutral fragments. The vanishing-gap phenomenon and troublesome SCF convergence are both attributed to the unphysical KS Fock operator eigenspectra of molecular fragments (e.g., amino acids or their side chains). Analysis of amino acid pairs suggests that the unphysical charge delocalization can be partially ameliorated by the use of some range-separated hybrid functionals but not by semilocal or standard hybrid functionals. Last, we demonstrate that solutions without the unphysical charge delocalization can be located even for semilocal KS functionals highly prone to such defects, but such solutions have non-Aufbau character and are unstable with respect to mixing of the non-overlapping "frontier" orbitals. Caution should be exercised when unexpectedly small (or vanishing) HOMO-LUMO gaps and atypical SCF convergence patterns (e.g., oscillatory) are observed in KS DFT simulations in any context (bio or otherwise).
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Affiliation(s)
- Samuel A Slattery
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Jaden C Yon
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Edward F Valeev
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
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3
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Mandal A, Berquist EJ, Herbert JM. A new parameterization of the DFT/CIS method with applications to core-level spectroscopy. J Chem Phys 2024; 161:044114. [PMID: 39051834 DOI: 10.1063/5.0220535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Accepted: 07/08/2024] [Indexed: 07/27/2024] Open
Abstract
Time-dependent density functional theory (TD-DFT) within a restricted excitation space is an efficient means to compute core-level excitation energies using only a small subset of the occupied orbitals. However, core-to-valence excitation energies are significantly underestimated when standard exchange-correlation functionals are used, which is partly traceable to systemic issues with TD-DFT's description of Rydberg and charge-transfer excited states. To mitigate this, we have implemented an empirically modified combination of configuration interaction with single substitutions (CIS) based on Kohn-Sham orbitals, which is known as "DFT/CIS." This semi-empirical approach is well-suited for simulating x-ray near-edge spectra, as it contains sufficient exact exchange to model charge-transfer excitations yet retains DFT's low-cost description of dynamical electron correlation. Empirical corrections to the matrix elements enable semi-quantitative simulation of near-edge x-ray spectra without the need for significant a posteriori shifts; this should be useful in complex molecules and materials with multiple overlapping x-ray edges. Parameter optimization for use with a specific range-separated hybrid functional makes this a black-box method intended for both core and valence spectroscopy. Results herein demonstrate that realistic K-edge absorption and emission spectra can be obtained for second- and third-row elements and 3d transition metals, with promising results for L-edge spectra as well. DFT/CIS calculations require absolute shifts that are considerably smaller than what is typical in TD-DFT.
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Affiliation(s)
- Aniket Mandal
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
| | | | - John M Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
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4
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Schröder LA, Anderson HL, Rončević I. Evaluating the interactions between vibrational modes and electronic transitions using frontier orbital energy derivatives. Chem Commun (Camb) 2024; 60:7606-7609. [PMID: 38952338 PMCID: PMC11257084 DOI: 10.1039/d4cc02066a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 06/24/2024] [Indexed: 07/03/2024]
Abstract
Vibrations affect molecular optoelectronic properties, even at zero kelvin. Accounting for these effects using computational modelling is costly, as it requires many calculations at geometries distorted from equilibrium. Here, we propose a low-cost method for identifying vibrations most strongly coupled to the electronic structure, based on using orbital energy derivatives as a diagnostic.
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Affiliation(s)
- Lisa A Schröder
- Department of Chemistry, Oxford University, Chemistry Research Laboratory, Oxford OX1 3TA, UK.
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, KIT Campus South, Fritz-Haber-Weg 2, D-76131 Karlsruhe, Germany
| | - Harry L Anderson
- Department of Chemistry, Oxford University, Chemistry Research Laboratory, Oxford OX1 3TA, UK.
| | - Igor Rončević
- Department of Chemistry, Oxford University, Chemistry Research Laboratory, Oxford OX1 3TA, UK.
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Kalinkin MO, Kellerman DG, Medvedeva NI. Ab initio study of stability and quadrupole coupling constants in borophosphates. Dalton Trans 2024; 53:11928-11937. [PMID: 38958061 DOI: 10.1039/d4dt01429d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
The DFT method was used to predict the formation energies and quadrupole coupling constants CQ in a series of borophosphates: Li3BP2O8, Li2NaBP2O8, Na3BP2O8, Li2B3PO8, Na5B2P3O13, LiNa2B5P2O14 and Na3B6PO13 composed of different networks and different amounts of borate and phosphate units. The change in formation energies with increasing number of B atoms in this series is attributed to the multiplicity of boron sites and is explained by density of states calculations. The calculated CQ values of 7Li, 23Na and 11B are correlated with the coordination and distortion of polyhedra to elucidate the influence of local and more distant environments. As for the CQ of 11B, it should be in the ranges of 0.26-0.36, 0.48-0.84 and ∼1 MHz for boron tetrahedral distortion indices of 0.004-0.013, 0.015-0.019 and 0.033, respectively, whereas CQ ∼3.0 MHz corresponds to boron in a triangular site. The obtained numerical relationships make it possible to predict the quadrupole frequencies for these nuclei based only on their local environment, and vice versa, to propose structural models from NMR data. These results provide guidance for studying similar characteristics of other borophosphates, the structure of which varies depending on the initial reaction, composition and temperature.
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Hu Y, Sheng X, Wang J, Baerends EJ. Dispersion Energies with the i-DMFT Method. J Chem Theory Comput 2024; 20:5466-5474. [PMID: 38916591 PMCID: PMC11238530 DOI: 10.1021/acs.jctc.4c00219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/26/2024]
Abstract
The recently proposed i-DMFT method [Wang and Baerends, Phys. Rev. Lett. 128, 013001 (2022)] has been proven to be ideally suited to recover strong static correlation in dissociating covalent bonds. Here, the application to van der Waals bonding is investigated using the prototype van der Waals systems triplet H2 and ground-state He2. It is demonstrated that the i-DMFT orbitals are in this case essentially different from the natural orbitals, and the i-DMFT occupations differ substantially from the NO occupations. This is shown to lead to rather deficient interaction potential curves, even if a reasonable well depth may be obtained by fitting of parameters. If the basis set is extended, however, it may no longer be possible to generate van der Waals bonding at all. The linear behavior of the two-electron cumulant energy Ecum as a function of the "entropy" S along a dissociation coordinate, which was the basis of i-DMFT, is distinctly poorer in the case of van der Waals bonding than for covalent bonding.
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Affiliation(s)
- Yihan Hu
- Anhui Province Key Laboratory for Control and Applications of Optoelectronic Information Materials, Anhui Normal University, Anhui, Wuhu 241000, China
| | - Xiaowei Sheng
- Anhui Province Key Laboratory for Control and Applications of Optoelectronic Information Materials, Anhui Normal University, Anhui, Wuhu 241000, China
| | - Jian Wang
- School of Science, Huzhou University, Zhejiang 313000, China
| | - Evert Jan Baerends
- Section Theoretical Chemistry, Faculty of Science, Vrije Universiteit, De Boelelaan 1108, Amsterdam 1081HV, The Netherlands
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Park W, Lashkaripour A, Komarov K, Lee S, Huix-Rotllant M, Choi CH. Toward Consistent Predictions of Core/Valence Ionization Potentials and Valence Excitation Energies by MRSF-TDDFT. J Chem Theory Comput 2024; 20:5679-5694. [PMID: 38902891 DOI: 10.1021/acs.jctc.4c00640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
Abstract
Optimizing exchange-correlation functionals for both core/valence ionization potentials (cIPs/vIPs) and valence excitation energies (VEEs) at the same time in the framework of MRSF-TDDFT is self-contradictory. To overcome the challenge, within the previous "adaptive exact exchange" or double-tuning strategy on Coulomb-attenuating XC functionals (CAM), a new XC functional specifically for cIPs and vIPs was first developed by enhancing exact exchange to both short- and long-range regions. The resulting DTCAM-XI functional achieved remarkably high accuracy in its predictions with errors of less than half eV. An additional concept of "valence attenuation", where the amount of exact exchange for the frontier orbital regions is selectively suppressed, was introduced to consistently predict both VEEs and IPs at the same time. The second functional, DTCAM-XIV, exhibits consistent overall prediction accuracy at ∼0.64 eV. By preferentially optimizing VEEs within the same "valence attenuation" concept, a third functional, DTCAM-VAEE, was obtained, which exhibits improved performance as compared to that of the previous DTCAM-VEE and DTCAM-AEE in the prediction of VEEs, making it an attractive alternative to BH&HLYP. As the combination of "adaptive exchange" and "valence attenuation" is operative, it would be exciting to explore its potential with a more tunable framework in the future.
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Affiliation(s)
- Woojin Park
- Department of Chemistry, Kyungpook National University, Daegu 41566, South Korea
| | - Alireza Lashkaripour
- Department of Chemistry, Kyungpook National University, Daegu 41566, South Korea
| | - Konstantin Komarov
- Center for Quantum Dynamics, Pohang University of Science and Technology, Pohang 37673, South Korea
- Department of Chemistry, University of Zürich, Zürich 8057, Switzerland
| | - Seunghoon Lee
- Department of Chemistry, Seoul National University, Seoul 151-747, South Korea
| | | | - Cheol Ho Choi
- Department of Chemistry, Kyungpook National University, Daegu 41566, South Korea
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Zhang Y, Yang J, Dong C, Li X. Introducing hafnium to atomically small- and medium-sized tin clusters (HfSn n0/-/2- (n = 4-17)): A computational investigation of geometrical and growth behavior, spectral properties, electronic configuration and thermochemistry. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 315:124277. [PMID: 38636426 DOI: 10.1016/j.saa.2024.124277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Revised: 03/30/2024] [Accepted: 04/11/2024] [Indexed: 04/20/2024]
Abstract
The global and local minimum configurations of single Hf atom doped Sn clusters are conducted via density function theory (DFT) combined with artificial bee colony algorithm (ABCluster). Furthermore, DFT method is also used to systematically investigate on their structural growth evolution, spectral and electronic information, thermochemical properties following the size of tin clusters doped Hf atom. Structurally, the ground-state geometries of neutral, anion and di-anion are discovered that, from n = 4, the number of Sn atoms in cluster, HfSnn0/-/2- adsorb additional Sn atom on the prior architecture one by one until forming n = 17 for HfSnn-10/-, as well as forming n = 16 for HfSnn-12-. And for the HfSn110/- and HfSn102- as beginning the species veritably develop sealed architectures. The strongest vibrational modes of sealed nanoclusters are stretching modes of Hf atom with infrared actives and breathing modes of the Sn cage framework with Raman actives, respectively. The natural population analysis (NPA) elucidates the stronger relationship between the Hf atoms and the tin frameworks in sealed clusters than that in unsealed clusters. The results of thermochemical properties, molecular orbital shell (MOs), adaptive natural density partitioning (AdNDP) and ultraviolet visible absorption spectrum (UV-Vis) indicate that, the HfSn16 with high symmetry of Td exhibits thermochemical stability and optoelectronic properties, which is utilized potentially as zero-dimensional unit of self-assembling fluorescent nanomaterials.
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Affiliation(s)
- Yanpeng Zhang
- College of Chemical Engineering, Inner Mongolia University of Technology, and Inner Mongolia Key Laboratory of Theoretical and Computational Chemistry Simulation, Hohhot 010051, People's Republic of China
| | - Jucai Yang
- College of Chemical Engineering, Inner Mongolia University of Technology, and Inner Mongolia Key Laboratory of Theoretical and Computational Chemistry Simulation, Hohhot 010051, People's Republic of China; College of Resources and Environmental Engineering, Inner Mongolia University of Technology, Hohhot 010051, People's Republic of China
| | - Caixia Dong
- College of Resources and Environmental Engineering, Inner Mongolia University of Technology, Hohhot 010051, People's Republic of China.
| | - Xiaojun Li
- College of Science, Xi'an University of Posts and Telecommunications, Xi'an 710121, Shaanxi, People's Republic of China.
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9
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Brütting M, Bahmann H, Kümmel S. Combining Local Range Separation and Local Hybrids: A Step in the Quest for Obtaining Good Energies and Eigenvalues from One Functional. J Phys Chem A 2024; 128:5212-5223. [PMID: 38905018 DOI: 10.1021/acs.jpca.4c02787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/23/2024]
Abstract
Some of the most successful exchange-correlation approximations in density functional theory are "hybrids", i.e., they rely on combining semilocal density functionals with exact nonlocal Fock exchange. In recent years, two classes of hybrid functionals have emerged as particularly promising: range-separated hybrids on the one hand, and local hybrids on the other hand. These functionals offer the hope to overcome a long-standing "observable dilemma", i.e., the fact that density functionals typically yield either a good description of binding energies, as obtained, e.g., in global and local hybrids, or physically interpretable eigenvalues, as obtained, e.g., in optimally tuned range-separated hybrids. Obtaining both of these characteristics from one and the same functional with the same set of parameters has been a long-standing challenge. We here discuss combining the concepts of local range separation and local hybrids as part of a constraint-guided quest for functionals that overcome the observable dilemma.
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Affiliation(s)
- Moritz Brütting
- Theoretical Physics IV, University of Bayreuth, 95440 Bayreuth, Germany
| | - Hilke Bahmann
- Physical and Theoretical Chemistry, University of Wuppertal, 42097 Wuppertal, Germany
| | - Stephan Kümmel
- Theoretical Physics IV, University of Bayreuth, 95440 Bayreuth, Germany
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10
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Jia L, Brémond É, Zaida L, Gaüzère B, Tognetti V, Joubert L. Predicting redox potentials by graph-based machine learning methods. J Comput Chem 2024. [PMID: 38923574 DOI: 10.1002/jcc.27380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 03/25/2024] [Accepted: 04/19/2024] [Indexed: 06/28/2024]
Abstract
The evaluation of oxidation and reduction potentials is a pivotal task in various chemical fields. However, their accurate prediction by theoretical computations, which is a complementary task and sometimes the only alternative to experimental measurement, may be often resource-intensive and time-consuming. This paper addresses this challenge through the application of machine learning techniques, with a particular focus on graph-based methods (such as graph edit distances, graph kernels, and graph neural networks) that are reviewed to enlighten their deep links with theoretical chemistry. To this aim, we establish the ORedOx159 database, a comprehensive, homogeneous (with reference values stemming from density functional theory calculations), and reliable resource containing 318 one-electron reduction and oxidation reactions and featuring 159 large organic compounds. Subsequently, we provide an instructive overview of the good practice in machine learning and of commonly utilized machine learning models. We then assess their predictive performances on the ORedOx159 dataset through extensive analyses. Our simulations using descriptors that are computed in an almost instantaneous way result in a notable improvement in prediction accuracy, with mean absolute error (MAE) values equal to 5.6 kcal mol- 1 $$ {}^{-1} $$ for reduction and 7.2 kcal mol- 1 $$ {}^{-1} $$ for oxidation potentials, which paves a way toward efficient in silico design of new electrochemical systems.
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Affiliation(s)
- Linlin Jia
- The PRG Group, Institute of Computer Science, University of Bern, Bern, Switzerland
| | - Éric Brémond
- Université Paris Cité, ITODYS, CNRS, Paris, France
| | | | - Benoit Gaüzère
- LITIS, Univ Rouen Normandie, INSA Rouen Normandie, Université Le Havre Normandie, Normandie Univ, Rouen, France
| | - Vincent Tognetti
- Normandy Univ., COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS, Mont St Aignan Cedex, France
| | - Laurent Joubert
- Normandy Univ., COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS, Mont St Aignan Cedex, France
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11
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Montero-Cabrera LA, Montero-Alejo AL, Aspuru-Guzik A, García de la Vega JM, Piris M, Díaz-Fernández LA, Pérez-Badell Y, Guerra-Barroso A, Alfonso-Ramos JE, Rodríguez J, Fuentes ME, de Armas CM. Alternative CNDOL Fockians for fast and accurate description of molecular exciton properties. J Chem Phys 2024; 160:214108. [PMID: 38828812 DOI: 10.1063/5.0208809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2024] [Accepted: 05/14/2024] [Indexed: 06/05/2024] Open
Abstract
CNDOL is an a priori, approximate Fockian for molecular wave functions. In this study, we employ several modes of singly excited configuration interaction (CIS) to model molecular excitation properties by using four combinations of the one electron operator terms. Those options are compared to the experimental and theoretical data for a carefully selected set of molecules. The resulting excitons are represented by CIS wave functions that encompass all valence electrons in the system for each excited state energy. The Coulomb-exchange term associated to the calculated excitation energies is rationalized to evaluate theoretical exciton binding energies. This property is shown to be useful for discriminating the charge donation ability of molecular and supermolecular systems. Multielectronic 3D maps of exciton formal charges are showcased, demonstrating the applicability of these approximate wave functions for modeling properties of large molecules and clusters at nanoscales. This modeling proves useful in designing molecular photovoltaic devices. Our methodology holds potential applications in systematic evaluations of such systems and the development of fundamental artificial intelligence databases for predicting related properties.
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Affiliation(s)
- Luis A Montero-Cabrera
- Laboratorio de Química Computacional y Teórica, Departamento de Química Física, Universidad de La Habana, 10400 Havana, Cuba
- Donostia International Physics Center (DIPC), 20018 Donostia - San Sebastián, Basque Country, Spain
| | - Ana L Montero-Alejo
- Departamento de Física, Facultad de Ciencias Naturales, Matemática y del Medio Ambiente (FCNMM), Universidad Tecnológica Metropolitana; Ñuñoa, Santiago 7800002, Chile
| | - Alan Aspuru-Guzik
- Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | | | - Mario Piris
- Donostia International Physics Center (DIPC), 20018 Donostia - San Sebastián, Basque Country, Spain
| | - Lourdes A Díaz-Fernández
- Laboratorio de Química Computacional y Teórica, Departamento de Química Física, Universidad de La Habana, 10400 Havana, Cuba
| | - Yoana Pérez-Badell
- Laboratorio de Química Computacional y Teórica, Departamento de Química Física, Universidad de La Habana, 10400 Havana, Cuba
| | - Alberto Guerra-Barroso
- Laboratorio de Química Computacional y Teórica, Departamento de Química Física, Universidad de La Habana, 10400 Havana, Cuba
| | - Javier E Alfonso-Ramos
- Laboratorio de Química Computacional y Teórica, Departamento de Química Física, Universidad de La Habana, 10400 Havana, Cuba
| | - Javier Rodríguez
- Laboratorio de Química Computacional y Teórica, Departamento de Química Física, Universidad de La Habana, 10400 Havana, Cuba
| | - María E Fuentes
- Facultad de Ciencias Químicas, Universidad Autónoma de Chihuahua, Chihuahua, 31100 Chihuahua, Mexico
| | - Carlos M de Armas
- Laboratorio de Química Computacional y Teórica, Departamento de Química Física, Universidad de La Habana, 10400 Havana, Cuba
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12
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Achazi AJ, Fataj X, Rohland P, Hager MD, Schubert US, Mollenhauer D. Development of a multi-step screening procedure for redox active molecules in organic radical polymer anodes and as redox flow anolytes. J Comput Chem 2024; 45:1112-1129. [PMID: 38258532 DOI: 10.1002/jcc.27299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 12/13/2023] [Accepted: 12/15/2023] [Indexed: 01/24/2024]
Abstract
Benzo[d]-X-zolyl-pyridinyl (XO, S, NH) radicals represent a promising class of redox-active molecules for organic batteries. We present a multistep screening procedure to identify the most promising radical candidates. Experimental investigations and highly correlated wave function-based calculations are performed to determine benchmark redox potentials. Based on these, the accuracies of different methods (semi-empirical, density functional theory, wave function-based), solvent models, dispersion corrections, and basis sets are evaluated. The developed screening procedure consists of three steps: First, a conformer search is performed with CREST. The molecules are selected based on the redox potentials calculated using GFN2-xTB. Second, HOMO energies calculated with reparametrized B3LYP-D3(BJ) and the def2-SVP basis set are used as selection criteria. The final molecules are selected based on the redox potentials calculated from Gibbs energies using BP86-D3(BJ)/def2-TZVP. With this multistep screening approach, promising molecules can be suggested for synthesis, and structure-property relationships can be derived.
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Affiliation(s)
- Andreas J Achazi
- Physikalisch-Chemisches Institut, Justus-Liebig-Universität Gießen, Gießen, Germany
- Zentrum für Materialforschung, Justus-Liebig-Universität Gießen, Gießen, Germany
| | - Xhesilda Fataj
- Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena, Jena, Germany
- Center for Energy and Environmental Chemistry Jena (CEEC Jena), Friedrich Schiller University Jena, Jena, Germany
| | - Philip Rohland
- Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena, Jena, Germany
- Center for Energy and Environmental Chemistry Jena (CEEC Jena), Friedrich Schiller University Jena, Jena, Germany
| | - Martin D Hager
- Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena, Jena, Germany
- Center for Energy and Environmental Chemistry Jena (CEEC Jena), Friedrich Schiller University Jena, Jena, Germany
| | - Ulrich S Schubert
- Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena, Jena, Germany
- Center for Energy and Environmental Chemistry Jena (CEEC Jena), Friedrich Schiller University Jena, Jena, Germany
| | - Doreen Mollenhauer
- Physikalisch-Chemisches Institut, Justus-Liebig-Universität Gießen, Gießen, Germany
- Zentrum für Materialforschung, Justus-Liebig-Universität Gießen, Gießen, Germany
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13
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Jindal V, Aldahdooh MKR, Gomez ED, Janik MJ, Milner ST. Tight-binding model predicts exciton energetics and structure for photovoltaic molecules. Phys Chem Chem Phys 2024; 26:15472-15483. [PMID: 38751347 DOI: 10.1039/d4cp00554f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2024]
Abstract
Conjugated molecules and polymers are being designed as acceptor and donor materials for organic photovoltaic (OPV) cells. OPV performance depends on generation of free charge carriers through dissociation of excitons, which are electron-hole pairs created when a photon is absorbed. Here, we develop a tight-binding model to describe excitons on homo-oligomers, alternating co-oligomers, and a non-fullerene acceptor - IDTBR. We parameterize our model using density functional theory (DFT) energies of neutral, anion, cation, and excited states of constituent moieties. A symmetric molecule like IDTBR has two ends where an exciton can sit; but the product wavefunction approximation for the exciton breaks symmetry. So, we introduce a tight-binding model with full correlation between electron and hole, which allows the exciton to coherently explore both ends of the molecule. Our approach predicts optical singlet excitation energies for oligomers of varying length as well as IDTBR in good agreement with time-dependent DFT and spectroscopic results.
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Affiliation(s)
- Vishal Jindal
- Department of Chemical Engineering, The Pennsylvania State University, USA.
| | | | - Enrique D Gomez
- Department of Chemical Engineering, The Pennsylvania State University, USA.
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA
| | - Michael J Janik
- Department of Chemical Engineering, The Pennsylvania State University, USA.
| | - Scott T Milner
- Department of Chemical Engineering, The Pennsylvania State University, USA.
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA
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14
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Madden E, Zwijnenburg MA. The effect of particle size on the optical and electronic properties of hydrogenated silicon nanoparticles. Phys Chem Chem Phys 2024; 26:11695-11707. [PMID: 38563473 DOI: 10.1039/d4cp00119b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
We use a combination of many-body perturbation theory and time-dependent density functional theory to study the optical and electronic properties of hydrogen terminated silicon nanoparticles. We predict that the lowest excited states of these silicon nanoparticles are excitonic in character and that the corresponding excitons are completely delocalised over the volume of the particle. The size of the excitons is predicted to increase proportionally with the particle size. Conversely, we predict that the fundamental gap, the optical gap, and the exciton binding energy increase with decreasing particle size. The exciton binding energy is predicted to counter-act the variation in the fundamental gap and hence to reduce the variation of the optical gap with particle size. The variation in the exciton binding energy itself is probably caused by a reduction in the dielectric screening with decreasing particle size. The intensity of the excited state corresponding to the optical gap and other low energy excitations are predicted to increase with decreasing particle size. We explain this increase in terms of the 'band structure' becoming smeared out in reciprocal space with decreasing particle size, increasing the 'overlap' between the occupied and unoccupied quasiparticle states and thus, the oscillator strength. Fourier transforms of the lowest excitons show that they inherit the periodicity of the frontier quasiparticle states. This, combined with the delocalisation of the exciton and the large exciton binding energy, means that the excitons in silicon nanoparticles combine aspects of Wannier-Mott, delocalisation and effect of periodicity of the underlying structure, and Frenkel, large exciton binding energy, excitons.
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Affiliation(s)
- Eimear Madden
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK.
| | - Martijn A Zwijnenburg
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK.
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15
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Scott JM, Dale SG, McBroom J, Gould T, Li Q. Size Isn't Everything: Geometric Tuning in Polycyclic Aromatic Hydrocarbons and Its Implications for Carbon Nanodots. J Phys Chem A 2024; 128:2003-2014. [PMID: 38470339 DOI: 10.1021/acs.jpca.3c07416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Recent developments in light-emitting carbon nanodots and molecular organic semiconductors have seen renewed interest in the properties of polycyclic aromatic hydrocarbons (PAHs) as a family. The networks of delocalized π electrons in sp2-hybridized carbon grant PAHs light-emissive properties right across the visible spectrum. However, the mechanistic understanding of their emission energy has been limited due to the ground state-focused methods of determination. This computational chemistry work, therefore, seeks to validate existing rules and elucidate new features and characteristics of PAHs that influence their emissions. Predictions based on (time-dependent) density functional theory account for the full 3-dimensional electronic structure of ground and excited states and reveal that twisting and near-degeneracies strongly influence emission spectra and may therefore be used to tune the color of PAHs and, hence, carbon nanodots. We particularly note that the influence of twisting goes beyond torsional destabilization of the ground-state and geometric relaxation of the excited state, with a third contribution associated with the electric transition dipole. Symmetries and peri-condensation may also have an effect, but this could not be statistically confirmed. In pursuing this goal, we demonstrate that with minimal changes to molecular size, the entire visible spectrum may be spanned by geometric modification alone; we have also provided a first estimate of emission energy for 35 molecules currently lacking published emission spectra as well as clear guidelines for when more sophisticated computational techniques are required to predict the properties of PAHs accurately.
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Affiliation(s)
- James M Scott
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
- School of Engineering and Built Environment, Griffith University, Nathan, Queensland 4111, Australia
| | - Stephen G Dale
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
- The Institute for Functional Intelligent Materials (I-FIM), National University of Singapore, 4 Science Drive 2, Singapore 117544, Singapore
| | - James McBroom
- School of Environment and Science, Griffith University, Nathan, Queensland 4111, Australia
| | - Tim Gould
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
- School of Environment and Science, Griffith University, Nathan, Queensland 4111, Australia
| | - Qin Li
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
- School of Engineering and Built Environment, Griffith University, Nathan, Queensland 4111, Australia
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16
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Mazraedoost S, Žuvela P, Ulenberg S, Bączek T, Liu JJ. Cross-column density functional theory-based quantitative structure-retention relationship model development powered by machine learning. Anal Bioanal Chem 2024:10.1007/s00216-024-05243-7. [PMID: 38507043 DOI: 10.1007/s00216-024-05243-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 03/03/2024] [Accepted: 03/06/2024] [Indexed: 03/22/2024]
Abstract
Quantitative structure-retention relationship (QSRR) modeling has emerged as an efficient alternative to predict analyte retention times using molecular descriptors. However, most reported QSRR models are column-specific, requiring separate models for each high-performance liquid chromatography (HPLC) system. This study evaluates the potential of machine learning (ML) algorithms and quantum mechanical (QM) descriptors to develop QSRR models that can predict retention times across three different reversed-phase HPLC columns under varying conditions. Four machine learning methods-partial least squares (PLS) regression, ridge regression (RR), random forest (RF), and gradient boosting (GB)-were compared on a dataset of 360 retention times for 15 aromatic analytes. Molecular descriptors were calculated using density functional theory (DFT). Column characteristics like particle size and pore size and experimental conditions like temperature and gradient time were additionally used as descriptors. Results showed that the GB-QSRR model demonstrated the best predictive performance, with Q2 of 0.989 and root mean square error of prediction (RMSEP) of 0.749 min on the test set. Feature analysis revealed that solvation energy (SE), HOMO-LUMO energy gap (∆E HOMO-LUMO), total dipole moment (Mtot), and global hardness (η) are among the most influential predictors for retention time prediction, indicating the significance of electrostatic interactions and hydrophobicity. Our findings underscore the efficiency of ensemble methods, GB and RF models employing non-linear learners, in capturing local variations in retention times across diverse experimental setups. This study emphasizes the potential of cross-column QSRR modeling and highlights the utility of ML models in optimizing chromatographic analysis.
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Affiliation(s)
- Sargol Mazraedoost
- Intelligent Systems Laboratory, Department of Chemical Engineering, Pukyong National University, Busan, 48513, Republic of Korea
| | - Petar Žuvela
- Intelligent Systems Laboratory, Department of Chemical Engineering, Pukyong National University, Busan, 48513, Republic of Korea
| | - Szymon Ulenberg
- Department of Pharmaceutical Chemistry, Medical University of Gdańsk, Gen. J. Hallera 107, 80-416, Gdańsk, Poland
| | - Tomasz Bączek
- Department of Pharmaceutical Chemistry, Medical University of Gdańsk, Gen. J. Hallera 107, 80-416, Gdańsk, Poland
| | - J Jay Liu
- Intelligent Systems Laboratory, Department of Chemical Engineering, Pukyong National University, Busan, 48513, Republic of Korea.
- Institute of Cleaner Production Technology, Pukyong National University, (48513) 45, Yongso-Ro, Nam-Gu, Busan, South Korea.
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17
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Qin L, Liu YQ, Liu R, Yang X, Cui ZH, Zhao L, Pan S, Fau S, Frenking G. Analysis of the Unusual Chemical Bonds and Dipole Moments of AeF - (Ae=Be-Ba): A Lesson in Covalent Bonding. Chemistry 2024; 30:e202304136. [PMID: 38206568 DOI: 10.1002/chem.202304136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/10/2024] [Accepted: 01/11/2024] [Indexed: 01/12/2024]
Abstract
Quantum chemical calculations of the anions AeF- (Ae=Be-Ba) have been carried out using ab initio methods at the CCSD(T)/def2-TZVPP level and density functional theory employing BP86 with various basis sets. The detailed bonding analyses using different charge- and energy partitioning methods show that the molecules possess three distinctively different dative bonds in the lighter species with Ae=Be, Mg and four dative bonds when Ae=Ca, Sr, Ba. The occupied 2p atomic orbitals (AOs) and to a lesser degree the occupied 2s AO of F- donate electronic charge into the vacant spx(σ) and p(π) orbitals of Be and Mg which leads to a triple bond Ae F-. The heavier Ae atoms Ca, Sr, Ba use their vacant (n-1)d AOs as acceptor orbitals which enables them to form a second σ donor bond with F- that leads to quadruply bonded Ae F- (Ae=Ca-Ba). The presentation of molecular orbitals or charge distribution using only one isodensity value may give misleading information about the overall nature of the orbital or charge distribution. Better insights are given by contour line diagrams. The ELF calculations provide monosynaptic and disynaptic basins of AeF- which nicely agree with the analysis of the occupied molecular orbitals and with the charge density difference maps. A particular feature of the covalent bonds in AeF- concerns the inductive interaction of F- with the soft valence electrons in the (n)s valence orbitals of Ae. The polarization of the (n)s2 electrons induces a (n)spx hybridized lone-pair orbital at atom Ae, which yields a large dipole moment with the negative end at Ae. The concomitant formation of a vacant (n)spx AO of atom Ae, which overlaps with the occupied 2p(σ) AO of F-, leads to a strong covalent σ bond.
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Affiliation(s)
- Lei Qin
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Yu-Qian Liu
- Institute of Atomic and Molecular Physics, Jilin University, 130023, Changchun, China
| | - Ruiqin Liu
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Xing Yang
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, 130023, Changchun, China
| | - Lili Zhao
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, 130023, Changchun, China
| | - Stefan Fau
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, D-35043, Marburg, Germany
| | - Gernot Frenking
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, D-35043, Marburg, Germany
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18
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Mortensen JJ, Larsen AH, Kuisma M, Ivanov AV, Taghizadeh A, Peterson A, Haldar A, Dohn AO, Schäfer C, Jónsson EÖ, Hermes ED, Nilsson FA, Kastlunger G, Levi G, Jónsson H, Häkkinen H, Fojt J, Kangsabanik J, Sødequist J, Lehtomäki J, Heske J, Enkovaara J, Winther KT, Dulak M, Melander MM, Ovesen M, Louhivuori M, Walter M, Gjerding M, Lopez-Acevedo O, Erhart P, Warmbier R, Würdemann R, Kaappa S, Latini S, Boland TM, Bligaard T, Skovhus T, Susi T, Maxson T, Rossi T, Chen X, Schmerwitz YLA, Schiøtz J, Olsen T, Jacobsen KW, Thygesen KS. GPAW: An open Python package for electronic structure calculations. J Chem Phys 2024; 160:092503. [PMID: 38450733 DOI: 10.1063/5.0182685] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 01/15/2024] [Indexed: 03/08/2024] Open
Abstract
We review the GPAW open-source Python package for electronic structure calculations. GPAW is based on the projector-augmented wave method and can solve the self-consistent density functional theory (DFT) equations using three different wave-function representations, namely real-space grids, plane waves, and numerical atomic orbitals. The three representations are complementary and mutually independent and can be connected by transformations via the real-space grid. This multi-basis feature renders GPAW highly versatile and unique among similar codes. By virtue of its modular structure, the GPAW code constitutes an ideal platform for the implementation of new features and methodologies. Moreover, it is well integrated with the Atomic Simulation Environment (ASE), providing a flexible and dynamic user interface. In addition to ground-state DFT calculations, GPAW supports many-body GW band structures, optical excitations from the Bethe-Salpeter Equation, variational calculations of excited states in molecules and solids via direct optimization, and real-time propagation of the Kohn-Sham equations within time-dependent DFT. A range of more advanced methods to describe magnetic excitations and non-collinear magnetism in solids are also now available. In addition, GPAW can calculate non-linear optical tensors of solids, charged crystal point defects, and much more. Recently, support for graphics processing unit (GPU) acceleration has been achieved with minor modifications to the GPAW code thanks to the CuPy library. We end the review with an outlook, describing some future plans for GPAW.
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Affiliation(s)
- Jens Jørgen Mortensen
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Ask Hjorth Larsen
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Mikael Kuisma
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Aleksei V Ivanov
- Riverlane Ltd., St Andrews House, 59 St Andrews Street, Cambridge CB2 3BZ, United Kingdom
| | - Alireza Taghizadeh
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Andrew Peterson
- School of Engineering, Brown University, Providence, Rhode Island 02912, USA
| | - Anubhab Haldar
- Department of Electrical and Computer Engineering, Boston University, Boston, Massachusetts 02215, USA
| | - Asmus Ougaard Dohn
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark and Science Institute and Faculty of Physical Sciences, VR-III, University of Iceland, Reykjavík 107, Iceland
| | - Christian Schäfer
- Department of Physics, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden
| | - Elvar Örn Jónsson
- Science Institute and Faculty of Physical Sciences, University of Iceland, VR-III, 107 Reykjavík, Iceland
| | - Eric D Hermes
- Quantum-Si, 29 Business Park Drive, Branford, Connecticut 06405, USA
| | | | - Georg Kastlunger
- CatTheory, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Gianluca Levi
- Science Institute and Faculty of Physical Sciences, University of Iceland, VR-III, 107 Reykjavík, Iceland
| | - Hannes Jónsson
- Science Institute and Faculty of Physical Sciences, University of Iceland, VR-III, 107 Reykjavík, Iceland
| | - Hannu Häkkinen
- Departments of Physics and Chemistry, Nanoscience Center, University of Jyväskylä, FI-40014 Jyväskylä, Finland
| | - Jakub Fojt
- Department of Physics, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden
| | - Jiban Kangsabanik
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Joachim Sødequist
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Jouko Lehtomäki
- Department of Applied Physics, Aalto University, P.O. Box 11100, 00076 Aalto, Finland
| | - Julian Heske
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Jussi Enkovaara
- CSC-IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland
| | - Kirsten Trøstrup Winther
- SUNCAT Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Marcin Dulak
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Marko M Melander
- Department of Chemistry, Nanoscience Center, University of Jyväskylä, FI-40014 Jyväskylä, Finland
| | - Martin Ovesen
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Martti Louhivuori
- CSC-IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland
| | - Michael Walter
- FIT Freiburg Centre for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany
| | - Morten Gjerding
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Olga Lopez-Acevedo
- Biophysics of Tropical Diseases, Max Planck Tandem Group, University of Antioquia UdeA, 050010 Medellin, Colombia
| | - Paul Erhart
- Department of Physics, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden
| | - Robert Warmbier
- School of Physics and Mandelstam Institute for Theoretical Physics, University of the Witwatersrand, 1 Jan Smuts Avenue, 2001 Johannesburg, South Africa
| | - Rolf Würdemann
- Freiburger Materialforschungszentrum, Universität Freiburg, Stefan-Meier-Straße 21, D-79104 Freiburg, Germany
| | - Sami Kaappa
- Computational Physics Laboratory, Tampere University, P.O. Box 692, FI-33014 Tampere, Finland
| | - Simone Latini
- Nanomade, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Tara Maria Boland
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Thomas Bligaard
- Department of Energy Conversion and Storage, Technical University of Denmark, DK-2800 Lyngby, Denmark
| | - Thorbjørn Skovhus
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Toma Susi
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
| | - Tristan Maxson
- Department of Chemical and Biological Engineering, The University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - Tuomas Rossi
- CSC-IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland
| | - Xi Chen
- School of Physical Science and Technology, Lanzhou University, Lanzhou, Gansu 730000, China
| | | | - Jakob Schiøtz
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Thomas Olsen
- CAMD, Department of Physics, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
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19
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Herbert JM. Visualizing and characterizing excited states from time-dependent density functional theory. Phys Chem Chem Phys 2024; 26:3755-3794. [PMID: 38226636 DOI: 10.1039/d3cp04226j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2024]
Abstract
Time-dependent density functional theory (TD-DFT) is the most widely-used electronic structure method for excited states, due to a favorable combination of low cost and semi-quantitative accuracy in many contexts, even if there are well recognized limitations. This Perspective describes various ways in which excited states from TD-DFT calculations can be visualized and analyzed, both qualitatively and quantitatively. This includes not just orbitals and densities but also well-defined statistical measures of electron-hole separation and of Frenkel-type exciton delocalization. Emphasis is placed on mathematical connections between methods that have often been discussed separately. Particular attention is paid to charge-transfer diagnostics, which provide indicators of when TD-DFT may not be trustworthy due to its categorical failure to describe long-range electron transfer. Measures of exciton size and charge separation that are directly connected to the underlying transition density are recommended over more ad hoc metrics for quantifying charge-transfer character.
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Affiliation(s)
- John M Herbert
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA.
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20
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Zhang Y, Yang J, Dong C. Structural Growth Pattern, Electronic Configurations, and Spectral and Thermochemistry Properties of ZrSn n0/-/2- ( n = 4-17) Nanoscale Compounds: A Systematic Study Using Density Functional Theory. ACS OMEGA 2024; 9:3675-3690. [PMID: 38284033 PMCID: PMC10809232 DOI: 10.1021/acsomega.3c07674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 11/29/2023] [Accepted: 12/27/2023] [Indexed: 01/30/2024]
Abstract
By performing density functional theory (DFT) calculations for geometric optimization in conjunction with the artificial bee colony algorithm for cluster (ABCluster) global search approach, the ground-state structures of the neutral, anionic, and dianionic ZrSnn0/-/2- (n = 4-17) nanoscale compounds are obtained. Their structural growth evolution, spectral information, and electronic and thermochemical properties are investigated. Regarding the architectural evolution of the neutral, anion, and dianionic species, ZrSnn0/-/2- (n = 4-17) compounds possess two different stages of adsorption patterns in which, when n = 4-7 and n = 8-17, ZrSn40/-/2- and ZrSn80/-/2- compounds as the basic motif adsorb Sn atoms to become the larger clusters, respectively. The simulated photoelectron spectra (PES) of anionic compounds are in good agreement with the available experimental PES. The infrared and Raman spectra can be summarized as follows: under infrared vibrational modes, the sealed cages of ZrSnn0/-/2- compounds belong to the deformation mode, and under Raman vibrational modes, they belong to the breathing mode of the Sn cage framework. The density of states (DOS) spectra and natural population analysis (NPA) indicate that the interaction between the Zr atom and Snn frameworks of capsulated compounds has been developing stronger than for unsealed compounds. The results of thermochemical properties, molecular orbital shell (MOs) analysis, and ultraviolet-visible (UV-vis) absorption spectrum indicate that the neutral ZrSn16 nanoscale compound possesses not only both thermodynamic and chemical stability but also far-infrared sensing and optoelectronic properties and hence, is the best building block motif for new multipurpose nanoscale materials.
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Affiliation(s)
- Yanpeng Zhang
- College
of Chemical Engineering, Inner Mongolia
University of Technology, and Inner Mongolia Key Laboratory of Theoretical
and Computational Chemistry Simulation, Hohhot 010051, People’s Republic of China
| | - Jucai Yang
- College
of Chemical Engineering, Inner Mongolia
University of Technology, and Inner Mongolia Key Laboratory of Theoretical
and Computational Chemistry Simulation, Hohhot 010051, People’s Republic of China
- College
of Resources and Environmental Engineering, Inner Mongolia University of Technology, Hohhot 010051, People’s Republic of China
| | - Caixia Dong
- College
of Resources and Environmental Engineering, Inner Mongolia University of Technology, Hohhot 010051, People’s Republic of China
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21
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Wessling R, Delgado Andrés R, Morhenn I, Acker P, Maftuhin W, Walter M, Würfel U, Esser B. Phenothiazine-Based Donor-Acceptor Polymers as Multifunctional Materials for Charge Storage and Solar Energy Conversion. Macromol Rapid Commun 2024; 45:e2200699. [PMID: 36333908 DOI: 10.1002/marc.202200699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 10/14/2022] [Indexed: 11/06/2022]
Abstract
The increasing energy demand for diverse applications requires new types of devices and materials. Multifunctional materials that can fulfill different roles are of high interest as they can allow fabricating devices that can both convert and store energy. Herein, organic donor-acceptor redox polymers that can function as charge storage materials in batteries and as donor materials in bulk heterojunction (BHJ) photovoltaic devices are investigated. Based on its reversible redox chemistry, phenothiazine is used as the main building block in the conjugated copolymer design and combined with diketopyrrolopyrrol and benzothiadiazole as electron-poor comonomers to shift the optical absorption into the visible region. The resulting polymers show excellent cycling stability as positive electrode materials in lithium-organic batteries at discharge potentials of 3.6-3.7 V versus Li/Li+ as well as good performances in BHJ solar cells with up to 1.9% power conversion efficiency. This study shows that the design of such multifunctional materials is possible, however, that it also faces challenges, as essential properties for good device function can lead to diametrically opposite requirements in materials design.
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Affiliation(s)
- Robin Wessling
- Freiburg Materials Research Center (FMF), University of Freiburg, Stefan-Meier-Straße 21, 79104, Freiburg, Germany
- Cluster of Excellence livMatS @ FIT - Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110, Freiburg, Germany
- Institute for Organic Chemistry, University of Freiburg, Albertstraße 21, 79104, Freiburg, Germany
| | - Rodrigo Delgado Andrés
- Freiburg Materials Research Center (FMF), University of Freiburg, Stefan-Meier-Straße 21, 79104, Freiburg, Germany
- Cluster of Excellence livMatS @ FIT - Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110, Freiburg, Germany
| | - Isabel Morhenn
- Institute for Organic Chemistry, University of Freiburg, Albertstraße 21, 79104, Freiburg, Germany
| | - Pascal Acker
- Institute for Organic Chemistry, University of Freiburg, Albertstraße 21, 79104, Freiburg, Germany
| | - Wafa Maftuhin
- Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110, Freiburg, Germany
| | - Michael Walter
- Cluster of Excellence livMatS @ FIT - Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110, Freiburg, Germany
- Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110, Freiburg, Germany
- Fraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstr. 11, 79108, Freiburg, Germany
| | - Uli Würfel
- Freiburg Materials Research Center (FMF), University of Freiburg, Stefan-Meier-Straße 21, 79104, Freiburg, Germany
- Cluster of Excellence livMatS @ FIT - Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110, Freiburg, Germany
- Fraunhofer Institute for Solar Energy Systems ISE, Heidenhofstr. 2, 79110, Freiburg, Germany
| | - Birgit Esser
- Freiburg Materials Research Center (FMF), University of Freiburg, Stefan-Meier-Straße 21, 79104, Freiburg, Germany
- Cluster of Excellence livMatS @ FIT - Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110, Freiburg, Germany
- Institute for Organic Chemistry, University of Freiburg, Albertstraße 21, 79104, Freiburg, Germany
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22
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Jordan R, Maisuls I, Nair SS, Dietzek-Ivanšić B, Strassert CA, Klein A. Enhanced luminescence properties through heavy ancillary ligands in [Pt(C^N^C)(L)] complexes, L = AsPh 3 and SbPh 3. Dalton Trans 2023. [PMID: 38013458 DOI: 10.1039/d3dt03225f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
Abstract
In the frame of our research aiming to develop efficient triplet-emitting materials, we are exploring the concept of introducing additional heavy atoms into cyclometalated transition metal complexes to enhance intersystem-crossing (ISC) and thus triplet emission through increased spin-orbit coupling (SOC). In an in-depth proof-of-principle study we investigated the double cyclometalated Pt(II) complexes [Pt(C^N^C)(PnPh3)] (HC^N^CH = 2,6-diphenyl-pyridine (H2dpp) or dibenzoacridine (H2dba); Pn = pnictogen atoms P, As, Sb, or Bi) through a combined experimental and theoretical approach. The derivatives containing Pn = P, As, and Sb were synthesised and characterised comprehensively using single crystal X-ray diffraction (scXRD), UV-vis absorption and emission spectroscopy, transient absorption (TA) spectroscopy and cyclic voltammetry (CV). Across the series P < As < Sb, a red-shift is observed concerning absorption and emission maxima as well as optical and electrochemical HOMO-LUMO gaps. Increased photoluminescence quantum yields ΦL and radiative rates kr from mixed metal-to-ligand charge transfer (MLCT)/ligand centred (LC) triplet states are observed for the heavier homologues. Transient absorption spectroscopy showed processes in the ps range that were assigned to the population of the T1 state by ISC. The heavy PnPh3 ancillary ligands are found to enhance the emission efficiency due to both higher Pt-Pn bond strength and stronger SOC related to increased MLCT character of the excited states. The experimental findings are mirrored in hybrid (TD-)DFT calculations. This allowed for extrapolation to the rather elusive Bi derivatives, which were synthetically not accessible. This shortcoming is attributed to the transmetalation of phenyl groups from BiPh3 to Pt, as supported by experimental NMR/MS as well as DFT studies.
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Affiliation(s)
- Rose Jordan
- University of Cologne, Faculty for Mathematics and Natural Sciences, Department of Chemistry, Institute for Inorganic Chemistry, Greinstrasse 6, D-50939 Köln, Germany.
| | - Iván Maisuls
- Universität Münster, Institut für Anorganische und Analytische Chemie, CiMIC, CeNTech, Heisenbergstraße 11, D-48149 Münster, Germany.
| | - Shruthi S Nair
- Friedrich Schiller University Jena, Institute for Physical Chemistry (IPC), Helmholtzweg 4, 07743 Jena, Germany.
- Leibniz Institute for Photonic Technologies Jena (IPHT), Research Department Functional Interfaces, Albert-Einstein-Str. 9, 07745 Jena, Germany.
| | - Benjamin Dietzek-Ivanšić
- Friedrich Schiller University Jena, Institute for Physical Chemistry (IPC), Helmholtzweg 4, 07743 Jena, Germany.
- Leibniz Institute for Photonic Technologies Jena (IPHT), Research Department Functional Interfaces, Albert-Einstein-Str. 9, 07745 Jena, Germany.
| | - Cristian A Strassert
- Universität Münster, Institut für Anorganische und Analytische Chemie, CiMIC, CeNTech, Heisenbergstraße 11, D-48149 Münster, Germany.
| | - Axel Klein
- University of Cologne, Faculty for Mathematics and Natural Sciences, Department of Chemistry, Institute for Inorganic Chemistry, Greinstrasse 6, D-50939 Köln, Germany.
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23
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Komarov K, Park W, Lee S, Huix-Rotllant M, Choi CH. Doubly Tuned Exchange-Correlation Functionals for Mixed-Reference Spin-Flip Time-Dependent Density Functional Theory. J Chem Theory Comput 2023; 19:7671-7684. [PMID: 37844129 DOI: 10.1021/acs.jctc.3c00884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2023]
Abstract
It is demonstrated that significant accuracy improvements in MRSF-TDDFT can be achieved by introducing two different exchange-correlation (XC) functionals for the reference Kohn-Sham DFT and the response part of the calculations, respectively. Accordingly, two new XC functionals of doubly tuned Coulomb attenuated method-vertical excitation energy (DTCAM-VEE) and DTCAM-AEE were developed on the basis of the "adaptive exact exchange (AEE)" concept in the framework of the Coulomb-attenuating XC functionals. The values by DTCAM-VEE are in excellent agreement with those of Thiel's set [mean absolute errors (MAEs) and the interquartile range (IQR) values of 0.218 and 0.327 eV, respectively]. On the other hand, DTCAM-AEE faithfully reproduced the qualitative aspects of conical intersections (CIs) of trans-butadiene and thymine and the nonadiabatic molecular dynamics (NAMD) simulations on thymine. The latter functional also remarkably exhibited the exact 1/R asymptotic behavior of the charge-transfer state of an ethylene-tetrafluoroethylene dimer and the accurate potential energy surfaces (PESs) along the two torsional angles of retinal protonated Schiff base model with six double bonds (rPSB6). Overall, DTCAM-AEE generally performs well, as its MAE (0.237) and IQR (0.41 eV) are much improved as compared to BH&HLYP. The current idea can also be applied to other XC functionals as well as other variants of linear response theories, opening a new way of developing XC functionals.
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Affiliation(s)
- Konstantin Komarov
- Center for Quantum Dynamics, Pohang University of Science and Technology, Pohang 37673, South Korea
| | - Woojin Park
- Department of Chemistry, Kyungpook National University, Daegu 41566, South Korea
| | - Seunghoon Lee
- Department of Chemistry, Seoul National University, Seoul, 151-747, South Korea
| | | | - Cheol Ho Choi
- Department of Chemistry, Kyungpook National University, Daegu 41566, South Korea
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24
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Gao XF, Liu GH, Hu XK, Chen LL, Zhu BC, Zheng DS, Liao YH. DFT-Based Study of the Structure, Stability, and Spectral and Optical Properties of Gas-Phase NbMg n ( n = 2-12) Clusters. ACS OMEGA 2023; 8:41391-41401. [PMID: 37970033 PMCID: PMC10633863 DOI: 10.1021/acsomega.3c05113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 10/09/2023] [Accepted: 10/12/2023] [Indexed: 11/17/2023]
Abstract
Gas-phase NbMgn (n = 2-12) clusters were fully searched by CALYPSO software, and then the low-energy isomers were further optimized and calculated under DFT. It is shown that the three lowest energy isomers of NbMgn (n = 3-12) at each size are grown from two seed structures, i.e., tetrahedral and pentahedral structures, and the transition size occurs at the NbMg8 cluster. Interestingly, the relative stability calculations of the NbMg8 cluster ground-state isomer stand out under the examination of several parameters' calculations. The charge-transfer properties of the clusters of the ground-state isomers of various sizes had been comprehensively investigated. In order to be able to provide data guidance for future experimental probing of these ground-state clusters, this work also predicted infrared and Raman spectra at the same level of theoretical calculations. The results show that the multipeak nature of the IR and Raman spectra predicts that it is difficult to distinguish them directly. Finally, the optical properties of these clusters were investigated by calculating the static linear, second-order nonlinear, and third-order nonlinear coefficients. Importantly and interestingly, the NbMg8 cluster was shown to have superior nonlinear optical characteristics to all other clusters; thus, it is a powerful candidate for a potentially ultrasensitive nonlinear optical response device for some special purpose.
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Affiliation(s)
- Xiao-Feng Gao
- School
of Mathematics and Physics, Hubei Polytechnic
University, Huangshi 435003, People’s
Republic of China
- School
of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, People’s
Republic of China
| | - Guang-Hui Liu
- Daye
Special Steel Co., LTD, Huangshi 435003, People’s
Republic of China
| | - Xian-Kai Hu
- School
of Mathematics and Physics, Hubei Polytechnic
University, Huangshi 435003, People’s
Republic of China
| | - Lan-Li Chen
- School
of Mathematics and Physics, Hubei Polytechnic
University, Huangshi 435003, People’s
Republic of China
| | - Ben-Chao Zhu
- School
of Public Health, Hubei University of Medicine, Shiyan 442000, People’s Republic of China
| | - Ding-Shan Zheng
- School
of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, People’s
Republic of China
| | - Yan-Hua Liao
- School
of Mathematics and Physics, Hubei Polytechnic
University, Huangshi 435003, People’s
Republic of China
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25
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Franzke Y, Holzer C, Andersen JH, Begušić T, Bruder F, Coriani S, Della Sala F, Fabiano E, Fedotov DA, Fürst S, Gillhuber S, Grotjahn R, Kaupp M, Kehry M, Krstić M, Mack F, Majumdar S, Nguyen BD, Parker SM, Pauly F, Pausch A, Perlt E, Phun GS, Rajabi A, Rappoport D, Samal B, Schrader T, Sharma M, Tapavicza E, Treß RS, Voora V, Wodyński A, Yu JM, Zerulla B, Furche F, Hättig C, Sierka M, Tew DP, Weigend F. TURBOMOLE: Today and Tomorrow. J Chem Theory Comput 2023; 19:6859-6890. [PMID: 37382508 PMCID: PMC10601488 DOI: 10.1021/acs.jctc.3c00347] [Citation(s) in RCA: 37] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Indexed: 06/30/2023]
Abstract
TURBOMOLE is a highly optimized software suite for large-scale quantum-chemical and materials science simulations of molecules, clusters, extended systems, and periodic solids. TURBOMOLE uses Gaussian basis sets and has been designed with robust and fast quantum-chemical applications in mind, ranging from homogeneous and heterogeneous catalysis to inorganic and organic chemistry and various types of spectroscopy, light-matter interactions, and biochemistry. This Perspective briefly surveys TURBOMOLE's functionality and highlights recent developments that have taken place between 2020 and 2023, comprising new electronic structure methods for molecules and solids, previously unavailable molecular properties, embedding, and molecular dynamics approaches. Select features under development are reviewed to illustrate the continuous growth of the program suite, including nuclear electronic orbital methods, Hartree-Fock-based adiabatic connection models, simplified time-dependent density functional theory, relativistic effects and magnetic properties, and multiscale modeling of optical properties.
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Affiliation(s)
- Yannick
J. Franzke
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35032 Marburg, Germany
| | - Christof Holzer
- Institute
of Theoretical Solid State Physics, Karlsruhe
Institute of Technology (KIT), Wolfgang-Gaede-Str. 1, 76131 Karlsruhe, Germany
| | - Josefine H. Andersen
- DTU
Chemistry, Department of Chemistry, Technical
University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
| | - Tomislav Begušić
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, Pasadena, California 91125, United States
| | - Florian Bruder
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35032 Marburg, Germany
| | - Sonia Coriani
- DTU
Chemistry, Department of Chemistry, Technical
University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
| | - Fabio Della Sala
- Institute
for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, 73100 Lecce, Italy
- Center for
Biomolecular Nanotechnologies @UNILE, Istituto
Italiano di Tecnologia, Via Barsanti, 73010 Arnesano, Italy
| | - Eduardo Fabiano
- Institute
for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, 73100 Lecce, Italy
- Center for
Biomolecular Nanotechnologies @UNILE, Istituto
Italiano di Tecnologia, Via Barsanti, 73010 Arnesano, Italy
| | - Daniil A. Fedotov
- DTU
Chemistry, Department of Chemistry, Technical
University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Susanne Fürst
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Technische Universität Berlin, Straße des 17 Juni 135, 10623, Berlin, Germany
| | - Sebastian Gillhuber
- Institute
of Inorganic Chemistry, Karlsruhe Institute
of Technology (KIT), Engesserstr. 15, 76131 Karlsruhe, Germany
| | - Robin Grotjahn
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Martin Kaupp
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Technische Universität Berlin, Straße des 17 Juni 135, 10623, Berlin, Germany
| | - Max Kehry
- Institute
of Physical Chemistry, Karlsruhe Institute
of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Marjan Krstić
- Institute
of Theoretical Solid State Physics, Karlsruhe
Institute of Technology (KIT), Wolfgang-Gaede-Str. 1, 76131 Karlsruhe, Germany
| | - Fabian Mack
- Institute
of Physical Chemistry, Karlsruhe Institute
of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Sourav Majumdar
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Brian D. Nguyen
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Shane M. Parker
- Department
of Chemistry, Case Western Reserve University, 10900 Euclid Ave, Cleveland, Ohio 44106 United States
| | - Fabian Pauly
- Institute
of Physics, University of Augsburg, Universitätsstr. 1, 86159 Augsburg, Germany
| | - Ansgar Pausch
- Institute
of Physical Chemistry, Karlsruhe Institute
of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Eva Perlt
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - Gabriel S. Phun
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Ahmadreza Rajabi
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Dmitrij Rappoport
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Bibek Samal
- Department
of Chemical Sciences, Tata Institute of
Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
| | - Tim Schrader
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - Manas Sharma
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - Enrico Tapavicza
- Department
of Chemistry and Biochemistry, California
State University, Long Beach, 1250 Bellflower Boulevard, Long
Beach, California 90840-9507, United States
| | - Robert S. Treß
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Vamsee Voora
- Department
of Chemical Sciences, Tata Institute of
Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
| | - Artur Wodyński
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Technische Universität Berlin, Straße des 17 Juni 135, 10623, Berlin, Germany
| | - Jason M. Yu
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Benedikt Zerulla
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz-Platz
1, 76344 Eggenstein-Leopoldshafen Germany
| | - Filipp Furche
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Christof Hättig
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Marek Sierka
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - David P. Tew
- Physical
and Theoretical Chemistry Laboratory, University
of Oxford, South Parks
Road, Oxford OX1 3QZ, United Kingdom
| | - Florian Weigend
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35032 Marburg, Germany
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26
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Park W, Komarov K, Lee S, Choi CH. Mixed-Reference Spin-Flip Time-Dependent Density Functional Theory: Multireference Advantages with the Practicality of Linear Response Theory. J Phys Chem Lett 2023; 14:8896-8908. [PMID: 37767969 PMCID: PMC10561896 DOI: 10.1021/acs.jpclett.3c02296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Accepted: 09/21/2023] [Indexed: 09/29/2023]
Abstract
The density functional theory (DFT) and linear response (LR) time-dependent (TD)-DFT are of the utmost importance for routine computations. However, the single reference formulation of DFT suffers in the description of open-shell singlet systems such as diradicals and bond-breaking. LR-TDDFT, on the other hand, finds difficulties in the modeling of conical intersections, doubly excited states, and core-level excitations. In this Perspective, we demonstrate that many of these limitations can be overcome by recently developed mixed-reference (MR) spin-flip (SF)-TDDFT, providing an alternative yet accurate route for such challenging situations. Empowered by the practicality of the LR formalism, it is anticipated that MRSF-TDDFT can become one of the major workhorses for general routine tasks.
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Affiliation(s)
- Woojin Park
- Department
of Chemistry, Kyungpook National University, Daegu 41566, South Korea
| | - Konstantin Komarov
- Center
for Quantum Dynamics, Pohang University
of Science and Technology, Pohang 37673, South Korea
| | - Seunghoon Lee
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, Pasadena, California 91125, United States
| | - Cheol Ho Choi
- Department
of Chemistry, Kyungpook National University, Daegu 41566, South Korea
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27
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Wang F, Bu Y. A Ground-State Dual-Descriptor Strategy for Screening Efficient Singlet Fission Systems. J Phys Chem Lett 2023; 14:7198-7207. [PMID: 37549938 DOI: 10.1021/acs.jpclett.3c01554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/09/2023]
Abstract
Exploration of singlet fission (SF) materials is vital for enhancing the photoelectric conversion efficiency of photovoltaic devices, and the development of an effective screening means is in great demand. In this work, we for the first time propose a promising dual-descriptor strategy to predict the SF energetics (ΔESF) from ground-state electronic properties, the gap (GapHL) and exchange energy (KHL) between the highest occupied and lowest unoccupied molecular orbitals (HOMO and LUMO), where GapHL plays a dominant role and KHL acts as a correction. This strategy is statistically verified through exploring the effect of N-doping on the electronic/energetic properties of the N-doped tetracene derivatives and isomers. Several rules of thumb are suggested, and the reliability of this strategy is validated by comparison with experiments. This work proposes a novel strategy for exploring SF chromophores with insights into the SF energetics from ground-state properties and certainly has fundamental interest and generality in exploring efficient SF-capable materials.
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Affiliation(s)
- Fangkun Wang
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, People's Republic of China
| | - Yuxiang Bu
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, People's Republic of China
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28
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Komarov K, Mironov V, Lee S, Pham BQ, Gordon MS, Choi CH. High-performance strategies for the recent MRSF-TDDFT in GAMESS. J Chem Phys 2023; 158:2890476. [PMID: 37184015 DOI: 10.1063/5.0148005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 05/02/2023] [Indexed: 05/16/2023] Open
Abstract
Multiple ERI (Electron Repulsion Integral) tensor contractions (METC) with several matrices are ubiquitous in quantum chemistry. In response theories, the contraction operation, rather than ERI computations, can be the major bottleneck, as its computational demands are proportional to the multiplicatively combined contributions of the number of excited states and the kernel pre-factors. This paper presents several high-performance strategies for METC. Optimal approaches involve either the data layout reformations of interim density and Fock matrices, the introduction of intermediate ERI quartet buffer, and loop-reordering optimization for a higher cache hit rate. The combined strategies remarkably improve the performance of the MRSF (mixed reference spin flip)-TDDFT (time-dependent density functional theory) by nearly 300%. The results of this study are not limited to the MRSF-TDDFT method and can be applied to other METC scenarios.
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Affiliation(s)
- Konstantin Komarov
- Center for Quantum Dynamics, Pohang University of Science and Technology, Pohang 37673, South Korea
| | - Vladimir Mironov
- Department of Chemistry, Kyungpook National University, Daegu 41566, South Korea
| | - Seunghoon Lee
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Buu Q Pham
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Mark S Gordon
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Cheol Ho Choi
- Department of Chemistry, Kyungpook National University, Daegu 41566, South Korea
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29
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AIO3∙H6TeO6 (A=NH4, Rb): Two Telluric Acid and Iodate Co-Crystalline Compounds with Second Harmonic Generation Response. CHINESE JOURNAL OF STRUCTURAL CHEMISTRY 2023. [DOI: 10.1016/j.cjsc.2023.100025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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30
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Nguyen TH, Le KM, Nguyen LH, Truong TN. Machine Learning-Based Quantitative Structure-Property Relationships for the Electronic Properties of Cyano Polycyclic Aromatic Hydrocarbons. ACS OMEGA 2023; 8:464-472. [PMID: 36643419 PMCID: PMC9835191 DOI: 10.1021/acsomega.2c05159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 11/15/2022] [Indexed: 06/17/2023]
Abstract
In this study, quantitative structure-property relationships (QSPR) based on a machine learning (ML) methodology and the truncated degree of π-orbital overlap (DPO) to predict the electronic properties, namely, the bandgaps, electron affinities, and ionization potentials of the cyano polycyclic aromatic hydrocarbon (CN-PAH) chemical class were developed. The level of theory B3LYP/6-31+G(d) of density functional theory (DFT) was used to calculate a total of 926 data points for the development of the QSPR model. To include the substituents effects, a new descriptor was added to the DPO model. Consequently, the new ML-DPO model yields excellent linear correlations to predict the desired electronic properties with high accuracy to within 0.2 eV for all multi-CN-substituted PAHs and 0.1 eV for the mono-CN-substituted PAH subclass.
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Affiliation(s)
- Tuan H. Nguyen
- Institute
for Computational Science and Technology, Ho Chi Minh City700000, Vietnam
- Faculty
of Chemical Engineering, Ho Chi Minh City
University of Technology, 268 Ly Thuong Kiet Street, District 10, Ho Chi Minh City7000000, Vietnam
| | - Khang M. Le
- Faculty
of Chemistry, VNUHCM-University of Science, 227 Nguyen Van Cu Street, Ho Chi Minh City700000, Vietnam
| | - Lam H. Nguyen
- Institute
for Computational Science and Technology, Ho Chi Minh City700000, Vietnam
- Faculty
of Chemistry, VNUHCM-University of Science, 227 Nguyen Van Cu Street, Ho Chi Minh City700000, Vietnam
| | - Thanh N. Truong
- Department
of Chemistry, University of Utah, Salt Lake City, Utah84112, United States
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31
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Generalized exciton with a noninteger particle and hole charge as an excitation order. ADVANCES IN QUANTUM CHEMISTRY 2023. [DOI: 10.1016/bs.aiq.2023.01.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
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32
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Teale AM, Helgaker T, Savin A, Adamo C, Aradi B, Arbuznikov AV, Ayers PW, Baerends EJ, Barone V, Calaminici P, Cancès E, Carter EA, Chattaraj PK, Chermette H, Ciofini I, Crawford TD, De Proft F, Dobson JF, Draxl C, Frauenheim T, Fromager E, Fuentealba P, Gagliardi L, Galli G, Gao J, Geerlings P, Gidopoulos N, Gill PMW, Gori-Giorgi P, Görling A, Gould T, Grimme S, Gritsenko O, Jensen HJA, Johnson ER, Jones RO, Kaupp M, Köster AM, Kronik L, Krylov AI, Kvaal S, Laestadius A, Levy M, Lewin M, Liu S, Loos PF, Maitra NT, Neese F, Perdew JP, Pernal K, Pernot P, Piecuch P, Rebolini E, Reining L, Romaniello P, Ruzsinszky A, Salahub DR, Scheffler M, Schwerdtfeger P, Staroverov VN, Sun J, Tellgren E, Tozer DJ, Trickey SB, Ullrich CA, Vela A, Vignale G, Wesolowski TA, Xu X, Yang W. DFT exchange: sharing perspectives on the workhorse of quantum chemistry and materials science. Phys Chem Chem Phys 2022; 24:28700-28781. [PMID: 36269074 PMCID: PMC9728646 DOI: 10.1039/d2cp02827a] [Citation(s) in RCA: 62] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 08/09/2022] [Indexed: 12/13/2022]
Abstract
In this paper, the history, present status, and future of density-functional theory (DFT) is informally reviewed and discussed by 70 workers in the field, including molecular scientists, materials scientists, method developers and practitioners. The format of the paper is that of a roundtable discussion, in which the participants express and exchange views on DFT in the form of 302 individual contributions, formulated as responses to a preset list of 26 questions. Supported by a bibliography of 777 entries, the paper represents a broad snapshot of DFT, anno 2022.
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Affiliation(s)
- Andrew M. Teale
- School of Chemistry, University of Nottingham, University ParkNottinghamNG7 2RDUK
| | - Trygve Helgaker
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - Andreas Savin
- Laboratoire de Chimie Théorique, CNRS and Sorbonne University, 4 Place Jussieu, CEDEX 05, 75252 Paris, France.
| | - Carlo Adamo
- PSL University, CNRS, ChimieParisTech-PSL, Institute of Chemistry for Health and Life Sciences, i-CLeHS, 11 rue P. et M. Curie, 75005 Paris, France.
| | - Bálint Aradi
- Bremen Center for Computational Materials Science, University of Bremen, P.O. Box 330440, D-28334 Bremen, Germany.
| | - Alexei V. Arbuznikov
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7Straße des 17. Juni 13510623Berlin
| | | | - Evert Jan Baerends
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands.
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56125 Pisa, Italy.
| | - Patrizia Calaminici
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), CDMX, 07360, Mexico.
| | - Eric Cancès
- CERMICS, Ecole des Ponts and Inria Paris, 6 Avenue Blaise Pascal, 77455 Marne-la-Vallée, France.
| | - Emily A. Carter
- Department of Mechanical and Aerospace Engineering and the Andlinger Center for Energy and the Environment, Princeton UniversityPrincetonNJ 08544-5263USA
| | | | - Henry Chermette
- Institut Sciences Analytiques, Université Claude Bernard Lyon1, CNRS UMR 5280, 69622 Villeurbanne, France.
| | - Ilaria Ciofini
- PSL University, CNRS, ChimieParisTech-PSL, Institute of Chemistry for Health and Life Sciences, i-CLeHS, 11 rue P. et M. Curie, 75005 Paris, France.
| | - T. Daniel Crawford
- Department of Chemistry, Virginia TechBlacksburgVA 24061USA,Molecular Sciences Software InstituteBlacksburgVA 24060USA
| | - Frank De Proft
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium.
| | | | - Claudia Draxl
- Institut für Physik and IRIS Adlershof, Humboldt-Universität zu Berlin, 12489 Berlin, Germany. .,Fritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany
| | - Thomas Frauenheim
- Bremen Center for Computational Materials Science, University of Bremen, P.O. Box 330440, D-28334 Bremen, Germany. .,Beijing Computational Science Research Center (CSRC), 100193 Beijing, China.,Shenzhen JL Computational Science and Applied Research Institute, 518110 Shenzhen, China
| | - Emmanuel Fromager
- Laboratoire de Chimie Quantique, Institut de Chimie, CNRS/Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France.
| | - Patricio Fuentealba
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile.
| | - Laura Gagliardi
- Department of Chemistry, Pritzker School of Molecular Engineering, The James Franck Institute, and Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, USA.
| | - Giulia Galli
- Pritzker School of Molecular Engineering and Department of Chemistry, The University of Chicago, Chicago, IL, USA.
| | - Jiali Gao
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China. .,Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA
| | - Paul Geerlings
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium.
| | - Nikitas Gidopoulos
- Department of Physics, Durham University, South Road, Durham DH1 3LE, UK.
| | - Peter M. W. Gill
- School of Chemistry, University of SydneyCamperdown NSW 2006Australia
| | - Paola Gori-Giorgi
- Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands.
| | - Andreas Görling
- Chair of Theoretical Chemistry, University of Erlangen-Nuremberg, Egerlandstrasse 3, 91058 Erlangen, Germany.
| | - Tim Gould
- Qld Micro- and Nanotechnology Centre, Griffith University, Gold Coast, Qld 4222, Australia.
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, University of Bonn, Beringstrasse 4, 53115 Bonn, Germany.
| | - Oleg Gritsenko
- Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands.
| | - Hans Jørgen Aagaard Jensen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, DK-5230 Odense M, Denmark.
| | - Erin R. Johnson
- Department of Chemistry, Dalhousie UniversityHalifaxNova ScotiaB3H 4R2Canada
| | - Robert O. Jones
- Peter Grünberg Institut PGI-1, Forschungszentrum Jülich52425 JülichGermany
| | - Martin Kaupp
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, 10623, Berlin.
| | - Andreas M. Köster
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav)CDMX07360Mexico
| | - Leeor Kronik
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovoth, 76100, Israel.
| | - Anna I. Krylov
- Department of Chemistry, University of Southern CaliforniaLos AngelesCalifornia 90089USA
| | - Simen Kvaal
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - Andre Laestadius
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - Mel Levy
- Department of Chemistry, Tulane University, New Orleans, Louisiana, 70118, USA.
| | - Mathieu Lewin
- CNRS & CEREMADE, Université Paris-Dauphine, PSL Research University, Place de Lattre de Tassigny, 75016 Paris, France.
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, NC 27599-3420, USA. .,Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599-3290, USA
| | - Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
| | - Neepa T. Maitra
- Department of Physics, Rutgers University at Newark101 Warren StreetNewarkNJ 07102USA
| | - Frank Neese
- Max Planck Institut für Kohlenforschung, Kaiser Wilhelm Platz 1, D-45470 Mülheim an der Ruhr, Germany.
| | - John P. Perdew
- Departments of Physics and Chemistry, Temple UniversityPhiladelphiaPA 19122USA
| | - Katarzyna Pernal
- Institute of Physics, Lodz University of Technology, ul. Wolczanska 219, 90-924 Lodz, Poland.
| | - Pascal Pernot
- Institut de Chimie Physique, UMR8000, CNRS and Université Paris-Saclay, Bât. 349, Campus d'Orsay, 91405 Orsay, France.
| | - Piotr Piecuch
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA. .,Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan 48824, USA
| | - Elisa Rebolini
- Institut Laue Langevin, 71 avenue des Martyrs, 38000 Grenoble, France.
| | - Lucia Reining
- Laboratoire des Solides Irradiés, CNRS, CEA/DRF/IRAMIS, École Polytechnique, Institut Polytechnique de Paris, F-91120 Palaiseau, France. .,European Theoretical Spectroscopy Facility
| | - Pina Romaniello
- Laboratoire de Physique Théorique (UMR 5152), Université de Toulouse, CNRS, UPS, France.
| | - Adrienn Ruzsinszky
- Department of Physics, Temple University, Philadelphia, Pennsylvania 19122, USA.
| | - Dennis R. Salahub
- Department of Chemistry, Department of Physics and Astronomy, CMS – Centre for Molecular Simulation, IQST – Institute for Quantum Science and Technology, Quantum Alberta, University of Calgary2500 University Drive NWCalgaryAlbertaT2N 1N4Canada
| | - Matthias Scheffler
- The NOMAD Laboratory at the FHI of the Max-Planck-Gesellschaft and IRIS-Adlershof of the Humboldt-Universität zu Berlin, Faradayweg 4-6, D-14195, Germany.
| | - Peter Schwerdtfeger
- Centre for Theoretical Chemistry and Physics, The New Zealand Institute for Advanced Study, Massey University Auckland, 0632 Auckland, New Zealand.
| | - Viktor N. Staroverov
- Department of Chemistry, The University of Western OntarioLondonOntario N6A 5B7Canada
| | - Jianwei Sun
- Department of Physics and Engineering Physics, Tulane University, New Orleans, LA 70118, USA.
| | - Erik Tellgren
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - David J. Tozer
- Department of Chemistry, Durham UniversitySouth RoadDurhamDH1 3LEUK
| | - Samuel B. Trickey
- Quantum Theory Project, Deptartment of Physics, University of FloridaGainesvilleFL 32611USA
| | - Carsten A. Ullrich
- Department of Physics and Astronomy, University of MissouriColumbiaMO 65211USA
| | - Alberto Vela
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), CDMX, 07360, Mexico.
| | - Giovanni Vignale
- Department of Physics, University of Missouri, Columbia, MO 65203, USA.
| | - Tomasz A. Wesolowski
- Department of Physical Chemistry, Université de Genève30 Quai Ernest-Ansermet1211 GenèveSwitzerland
| | - Xin Xu
- Shanghai Key Laboratory of Molecular Catalysis and Innovation Materials, Collaborative Innovation Centre of Chemistry for Energy Materials, MOE Laboratory for Computational Physical Science, Department of Chemistry, Fudan University, Shanghai 200433, China.
| | - Weitao Yang
- Department of Chemistry and Physics, Duke University, Durham, NC 27516, USA.
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Belle R, Kamps JJAG, Poater J, Kumar K, Pieters BJGE, Salah E, Claridge TDW, Paton RS, Bickelhaupt FM, Kawamura A, Schofield CJ, Mecinović J. Reading and erasing of the phosphonium analogue of trimethyllysine by epigenetic proteins. Commun Chem 2022; 5:10.1038/s42004-022-00640-4. [PMID: 36071790 PMCID: PMC7613515 DOI: 10.1038/s42004-022-00640-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 02/03/2022] [Indexed: 01/27/2023] Open
Abstract
N ε-Methylation of lysine residues in histones plays an essential role in the regulation of eukaryotic transcription. The 'highest' methylation mark, N ε-trimethyllysine, is specifically recognised by N ε-trimethyllysine binding 'reader' domains, and undergoes demethylation, as catalysed by 2-oxoglutarate dependent JmjC oxygenases. We report studies on the recognition of the closest positively charged N ε-trimethyllysine analogue, i.e. its trimethylphosphonium derivative (KPme3), by N ε-trimethyllysine histone binding proteins and Nε-trimethyllysine demethylases. Calorimetric and computational studies with histone binding proteins reveal that H3KP4me3 binds more tightly than the natural H3K4me3 substrate, though the relative differences in binding affinity vary. Studies with JmjC demethylases show that some, but not all, of them can accept the phosphonium analogue of their natural substrates and that the methylation state selectivity can be changed by substitution of nitrogen for phosphorus. The combined results reveal that very subtle changes, e.g. substitution of nitrogen for phosphorus, can substantially affect interactions between ligand and reader domains / demethylases, knowledge that we hope will inspire the development of highly selective small molecules modulating their activity.
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Affiliation(s)
- Roman Belle
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
- Chemistry—School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU UK
| | - Jos J. A. G. Kamps
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Jordi Poater
- ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain
- Departament de Química Inorgànica i Orgànica & IQTCUB, Universitat de Barcelona, Martí i Franquès 1-11, 08028 Barcelona, Spain
| | - Kiran Kumar
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
| | - Bas J. G. E. Pieters
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Eidarus Salah
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
| | - Timothy D. W. Claridge
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
| | - Robert S. Paton
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
| | - F. Matthias Bickelhaupt
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling, Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
| | - Akane Kawamura
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
- Chemistry—School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU UK
| | - Christopher J. Schofield
- Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA UK
| | - Jasmin Mecinović
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark
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Purushothaman P, Karpagam S. Thiophene-Appended Benzothiazole Compounds for Ratiometric Detection of Copper and Cadmium Ions with Comparative Density Functional Theory Studies and Their Application in Real-Time Samples. ACS OMEGA 2022; 7:41361-41369. [PMID: 36406525 PMCID: PMC9670728 DOI: 10.1021/acsomega.2c05157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 10/20/2022] [Indexed: 06/16/2023]
Abstract
A thirst for the development of a simple fluorescence probe for enhanced sensing application has been achieved by synthesizing a stupendous thiophene-appended benzothiazole-conjugated compound L2. The synthesized compound L2 was characterized using nuclear magnetic resonance and mass spectrometry techniques. Furthermore, a photophysical property of L1 and L2 reveals the enhanced emission spectrum of L2 because of a restricted spin-orbital coupling as a result of increased conjugation compared to the ligand L1. Therefore, comparative studies were undertaken for L1 and L2. Henceforth, L2 was deployed for the ratiometric detection of Cd2+ ions in THF:water and L1 for the detection of Cu2+ ions in THF medium. The chemosensor L2 shows an outstanding water tolerance up to 60% and is stable between pH 2 and 7. This level of water tolerance and stability make L2 a suitable probe for analyzing real-time and biological samples. While the cadmium ion was added to L2, there was a significant red shift in emission from 496 to 549 nm, which indicates the controlled ICT due to complex formation. The metal-ligand complexation was also confirmed by noticing a decreased band gap of metal complex compared to the ligand as calculated using Tauc's plot with solid-phase UV data. The stoichiometric ratio was obtained by Job's plot that exhibited a 1:1 ratio of L2 and Cd2+ ions, and the limit of detection (LOD) was found to be 2.25 nM by the photoluminescence spectroscopic technique. The fluorescence lifetime of both L2 and L2-Cd2+ was found to be 58.3 ps and 0.147 ns, respectively. Alongside, the colorimetric-assisted ratiometric detection of Cu2+ by L1 with 1:2 stoichiometric ratio having an LOD of 1.06 × 10-7 M was also performed. Furthermore, the practical applicability of the probe L2 in sensing cadmium was tested in sewage water and vegetable extract; the recovery was approximately 98 and 99%, respectively. The experimental data were supported by theoretical investigation of structures of L1, L2, L1-Cu2+ , and L2-Cd2+ , complex formation, charge transfer mechanism, and band gap measurements done by quantum chemical density functional theory calculations.
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35
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Wang H, Dong C, Yang J. Theoretical Insights into the Geometrical Evolution, Photoelectron Spectra, and Vibrational Properties of YGe n - ( n = 6-20) Anions: From Y-Linked to Y-Encapsulated Structures. ACS OMEGA 2022; 7:36330-36342. [PMID: 36278055 PMCID: PMC9583326 DOI: 10.1021/acsomega.2c03983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
The structural evolution behavior of germanium anionic clusters doped with the rare-earth metal yttrium, YGe n - (n = 6-20), has been investigated using a mPW2PLYP density functional scheme and an ABCluster structure searching technique. The results reveal that with increasing cluster size n, the structure evolution pattern is from the Y-linked framework (n = 10-14), where Y serves as a linker (the Y atom bridges two germanium subclusters), to the Y-encapsulated framework (n = 15-20), where the Y atom is located in the center of the Ge cage. The simulated PES spectra show satisfying agreement with the experimental PES spectra for n = 12-20, which reveals that the global minimum structures reported here are reliable. In particular, the anionic YGe16 - nanocluster is found to be the most stable structure in the size range of n = 6-20 through analyzes of the relative stability, highest occupied molecular orbital (HOMO)-lowest unoccupied molecular orbital (LUMO) gap, spherical jellium model, and isochemical shielding surface. Moreover, spectral properties such as infrared and Raman spectra were reported. In addition, the UV-vis spectra of the YGe16 - nanocluster are in good agreement with solar energy distribution, showing that such substances serve as multifunctional building blocks to be potentially used in optoelectronic devices or solar energy converters.
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Affiliation(s)
- Haibo Wang
- School
of Chemical Engineering, Inner Mongolia
University of Technology, and Inner Mongolia Key Laboratory of Theoretical
and Computational Chemistry Simulation, Hohhot010051, Peoples Republic of China
| | - Caixia Dong
- School
of Mining and Technology, Inner Mongolia
University of Technology, Hohhot010051, Peoples Republic of
China
| | - Jucai Yang
- School
of Chemical Engineering, Inner Mongolia
University of Technology, and Inner Mongolia Key Laboratory of Theoretical
and Computational Chemistry Simulation, Hohhot010051, Peoples Republic of China
- School
of Energy and Power Engineering, Inner Mongolia
University of Technology, Hohhot010051, Peoples Republic of
China
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36
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Miranda-Quintana RA, Smiatek J. Electronic properties of amino acids and nucleobases: similarity classes and pairing principles from chemical reactivity indices. Phys Chem Chem Phys 2022; 24:22477-22486. [PMID: 36106477 DOI: 10.1039/d2cp02767d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a new classification scheme for amino acids and nucleobases based on the electronic properties of the individual molecules. Using chemical reactivity indices such as electronegativity, electrophilicity, and chemical hardness, we can identify similarities and differences between each class of amino acids and nucleobases. Notable differences emerge in particular with regard to high, neutral or low electronegativity as well as different combinations of chemical hardness. Our approach allows us to relate these insights to the properties of the side groups in terms of a unique reference scheme. We further show that hydrophobic differences between amino acids are rather negligible in the context of electronic properties. Our classification scheme also rationalizes the occurrence of distinct stable nucleobase pairs and clearly emphasizes certain differences between individual molecules. The stability and abundant occurrence of Watson-Crick nucleobase pairs is further discussed in the context of the minimum electrophilicity principle.
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Affiliation(s)
| | - Jens Smiatek
- Institute for Computational Physics, University of Stuttgart, Allmandring 3, D-70569 Stuttgart, Germany.
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Sudarkova SM, Ioffe IN. E/ Z photoisomerization pathway in pristine and fluorinated di(3-furyl)ethenes. Phys Chem Chem Phys 2022; 24:23749-23757. [PMID: 36156663 DOI: 10.1039/d2cp02563a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report an XMCQDPT2 study of the E/Z photoisomerization in a series of fluorinated di(3-furyl)ethenes (3DFEs). Upon excitation, pristine and low-fluorinated 3DFE show conventional behavior of many diarylethenes: unhindered twisting motion toward the pyramidalized zwitterionic state where relaxation to the ground state occurs. However, deep fluorination of 3DFEs can hamper E-to-Z isomerization by giving rise to an alternative excited-state relaxation pathway: an out-of-plane motion of a ring fluorine atom. Importantly, the case of fluorinated 3DFEs reveals serious deficiencies of the popular TDDFT approach. With some commonly used exchange-correlation functionals, the alternative relaxation pathway is not reproduced and, moreover, an irrelevant ring rotation coordinate is predicted instead. Nevertheless, TDDFT remains qualitatively adequate for the E-to-Z twisting coordinate taken alone.
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Affiliation(s)
- Svetlana M Sudarkova
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia.
| | - Ilya N Ioffe
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia.
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38
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Wang K, Miao L, Jia Z, Wang R, Yin G, Zhu X, Moro R, Ma L. Structural evolution and electronic properties of pure and semiconductor atom doped in clusters: In n - , In n Si - , and In n Ge - (n = 3-16). J Comput Chem 2022; 43:1978-1984. [PMID: 36125399 DOI: 10.1002/jcc.26998] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 08/07/2022] [Accepted: 08/18/2022] [Indexed: 11/12/2022]
Abstract
The bonding and electronic properties of Inn - , Inn Si- , and Inn Ge- (n = 3-16) clusters have been computationally investigated. An intensive global search for the ground-state structures of these clusters were conducted using the genetic algorithm coupled with density functional theory (DFT). The ground-state structures of these clusters have been identified through the comparison between simulated photoelectron spectra (PES) of the found lowest-energy isomers and the experimentally measured ones. Doping semiconductor atom (Si or Ge) can significantly change the structures of the In clusters in most sizes, and the dopant prefers to be surrounded by In atoms. There are three structural motifs for Inn X- (X = Si, Ge, n = 3-16), and the transition occurs at sizes n = 5 and 13. All Inn Si- and Inn Ge- share the same configurations and similar electronic properties except for n = 8. Among all above studied clusters, In13 - stands out with the largest vertical detachment energy (VDE), HOMO-LUMO gap, (Eb ) and second order energy difference Δ2 E due to its closed electronic shell of (1S)2 (1P)6 (1D)10 (2S)2 (1F)14 (2P)6 . Similarly, the neutral In12 X (X = Si, Ge) clusters are also identified as superatoms but with electronic configuration of (1S)2 (1P)6 (2S)2 (1D)10 (1F)14 (2P)6 .
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Affiliation(s)
- Kai Wang
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
| | - Lin Miao
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
| | - Zezhao Jia
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
| | - Runyu Wang
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
| | - Guangjia Yin
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
| | - Xiaodong Zhu
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
| | - Ramiro Moro
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
| | - Lei Ma
- Tianjin International Center for Nanoparticles and Nanosystems, Tianjin University, Tianjin, China
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39
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Spectroscopic Behaviour of Copper(II) Complexes Containing 2-Hydroxyphenones. Molecules 2022; 27:molecules27186033. [PMID: 36144769 PMCID: PMC9503792 DOI: 10.3390/molecules27186033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 08/29/2022] [Accepted: 09/07/2022] [Indexed: 11/17/2022] Open
Abstract
Theoretical investigations by density functional theory (DFT) and time-dependent DFT (TD-DFT) methods shed light on how the type of ligand or attached groups influence the electronic structure, absorption spectrum, electron excitation, and intramolecular and interfacial electron transfer of the Cu(II) complexes under study. The findings provide new insight into the designing and screening of high-performance dyes for dye-sensitized solar cells (DSSCs).
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40
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Breitwieser K, Bahmann H, Weiss R, Munz D. Gauging Radical Stabilization with Carbenes. Angew Chem Int Ed Engl 2022; 61:e202206390. [PMID: 35796423 PMCID: PMC9545232 DOI: 10.1002/anie.202206390] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Indexed: 11/29/2022]
Abstract
Carbenes, including N‐heterocyclic carbene (NHC) ligands, are used extensively to stabilize open‐shell transition metal complexes and organic radicals. Yet, it remains unknown, which carbene stabilizes a radical well and, thus, how to design radical‐stabilizing C‐donor ligands. With the large variety of C‐donor ligands experimentally investigated and their electronic properties established, we report herein their radical‐stabilizing effect. We show that radical stabilization can be understood by a captodative frontier orbital description involving π‐donation to‐ and π‐donation from the carbenes. This picture sheds a new perspective on NHC chemistry, where π‐donor effects usually are assumed to be negligible. Further, it allows for the intuitive prediction of the thermodynamic stability of covalent radicals of main group‐ and transition metal carbene complexes, and the quantification of redox non‐innocence.
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Affiliation(s)
- Kevin Breitwieser
- Coordination Chemistry Saarland University Campus C4.1 66123 Saarbrücken Germany
| | - Hilke Bahmann
- Physical and Theoretical Chemistry Saarland University Campus B2.2 66123 Saarbrücken Germany
| | - Robert Weiss
- Organische Chemie Friedrich-Alexander-Universität (FAU) Erlangen-Nürnberg Henkestr. 42 91054 Erlangen Germany
| | - Dominik Munz
- Coordination Chemistry Saarland University Campus C4.1 66123 Saarbrücken Germany
- Inorganic and General Chemistry Friedrich-Alexander-Universität (FAU) Erlangen-Nürnberg Egerlandstr. 1 91058 Erlangen Germany
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Wang Y, Pan H, Lin D, Li S, Wang Y, Sanvito S, Hou S. Robust covalent pyrazine anchors forming highly conductive and polarity-tunable molecular junctions with carbon electrodes. Phys Chem Chem Phys 2022; 24:21337-21347. [PMID: 36043392 DOI: 10.1039/d2cp02318k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In molecular electronics, electrode-molecule anchoring strategies play a crucial role in the design of stable and high-performance functional single-molecule devices. Herein, we employ aromatic pyrazine as anchors to connect a central anthracene molecule to carbon electrodes including graphene and armchair single-walled carbon nanotubes (SWCNTs), and theoretically investigate their atomic structures and electronic transport properties. These molecular junctions can be constructed via condensation reactions of the central molecules terminated with ortho-phenylenediamines with ortho-quinone-functionalized nanogaps of graphene and SWCNT electrodes. With two direct C-N covalent bonds connecting the central molecule site-selectively to carbon electrodes in a coplanar way, pyrazine anchors are advantageous for forming stable and structurally well-defined molecular junctions, being expected to reduce the uncertainty about the electrode-molecule linkage motifs. The junction transport is highly efficient due to the coplanar geometry and the ensuing strong π-type molecule-electrode electronic coupling. Furthermore, our calculations show that molecular junctions with pyrazine anchors and carbon electrodes are usually n-type electronic devices; upon hydrogenation of pyridinic nitrogen atoms, the device polarity can be tuned to p-type, indicating that the pyrazine anchors can also serve as a powerful platform for tailoring in situ the polarity of charge carriers in carbon-electrode molecular electronic devices.
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Affiliation(s)
- Yudi Wang
- Key Laboratory for the Physics and Chemistry of Nanodevices, School of Electronics, Peking University, Beijing 100871, China.
| | - Haoyang Pan
- Key Laboratory for the Physics and Chemistry of Nanodevices, School of Electronics, Peking University, Beijing 100871, China. .,Centre for Nanoscale Science and Technology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Dongying Lin
- Key Laboratory for the Physics and Chemistry of Nanodevices, School of Electronics, Peking University, Beijing 100871, China.
| | - Shi Li
- Key Laboratory for the Physics and Chemistry of Nanodevices, School of Electronics, Peking University, Beijing 100871, China.
| | - Yongfeng Wang
- Key Laboratory for the Physics and Chemistry of Nanodevices, School of Electronics, Peking University, Beijing 100871, China.
| | - Stefano Sanvito
- School of Physics, AMBER and CRANN Institute, Trinity College, Dublin 2, Ireland
| | - Shimin Hou
- Key Laboratory for the Physics and Chemistry of Nanodevices, School of Electronics, Peking University, Beijing 100871, China. .,Centre for Nanoscale Science and Technology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
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42
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Yang Z, Rehman AU, Cao Z, Yang J. Structural evolution, photoelectron spectra and vibrational properties of anionic GdGe n - ( n = 5-18) nanoalloy clusters: a DFT insight. RSC Adv 2022; 12:22020-22030. [PMID: 36043068 PMCID: PMC9364359 DOI: 10.1039/d2ra04037a] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/01/2022] [Indexed: 12/02/2022] Open
Abstract
The structural growth of Gd-doped germanium anionic nanoclusters, GdGen− (n = 5–18), has been explored via quantum chemistry calculations using the mPW2PLYP method and an unprejudiced structural searching technique known as ABCluster. The optimized geometries exhibited that when n = 10–14, the structural evolution favors the Gd-linked configuration where the Gd atom as a connector bridges two Ge subgroups, while the Gd atom is encapsulated in a closed cage-like Ge frame when n = 15–18. The properties like magnetic moment, charge transfer, relative stability, HOMO–LUMO gap, photoelectron spectra, and infrared and Raman spectra have been predicted. The information of these spectra could provide extra approaches to experimentally determine the electronic structures and equilibrium configuration of these compounds. The largest spin magnetic moment of 7 μB is attained via half-filled 4f states. The GdGe16− nanocluster is determined to be a superatom because its total valence of 75 electrons can be distributed to the orbital sequence of 1S21P6(4f7)1D101F142S22P21G182P42D10, which complies with not only Hund's rule, but also the spherical jellium model. Particularly, its UV-Vis spectra match well with solar energy distribution. Such materials act as nano multifunctional building units potentially used in solar energy converters or ultra-highly sensitive near-infrared photodetectors. The structural evolution, electronic and vibrational properties of GdGen− (n=5-18) nanoclusters were studied by quantum chemical calculations, which revealed GdGe16− nanocluster is a superatom to the orbital of 1S21P6(4f7)1D101F142S22P21G182P42D10.![]()
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Affiliation(s)
- Zhaofeng Yang
- School of Chemical Engineering, Inner Mongolia University of Technology, Inner Mongolia Key Laboratory of Theoretical and Computational Chemistry Simulation Hohhot 010051 Peoples Republic of China
| | - Aziz U Rehman
- School of Chemical Engineering, Inner Mongolia University of Technology, Inner Mongolia Key Laboratory of Theoretical and Computational Chemistry Simulation Hohhot 010051 Peoples Republic of China
| | - Zhenzhu Cao
- School of Chemical Engineering, Inner Mongolia University of Technology, Inner Mongolia Key Laboratory of Theoretical and Computational Chemistry Simulation Hohhot 010051 Peoples Republic of China
| | - Jucai Yang
- School of Chemical Engineering, Inner Mongolia University of Technology, Inner Mongolia Key Laboratory of Theoretical and Computational Chemistry Simulation Hohhot 010051 Peoples Republic of China .,School of Energy and Power Engineering, Inner Mongolia University of Technology Hohhot 010051 Peoples Republic of China
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43
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Breitwieser K, Bahmann H, Weiss R, Munz D. Gauging Radical Stabilization with Carbenes. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kevin Breitwieser
- Saarland University: Universitat des Saarlandes Coordination Chemistry GERMANY
| | - Hilke Bahmann
- Saarland University: Universitat des Saarlandes Theoretical Chemistry GERMANY
| | - Robert Weiss
- FAU Erlangen Nuremberg: Friedrich-Alexander-Universitat Erlangen-Nurnberg Organic Chemistry GERMANY
| | - Dominik Munz
- Universitat des Saarlandes Inorganic Chemistry: Coordination Chemistry Campus C 4.1 66123 Saarbrücken GERMANY
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44
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Tseplin EE, Tseplina SN, Lukin VG, Khvostenko OG. Resonant charge transfer in the interaction of hyperthermal anions with a technical graphite-like conducting surface. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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45
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Yang X, Elbert SM, Rominger F, Mastalerz M. A Series of Soluble Thieno-Fused Coronene Nanoribbons of Precise Lengths. J Am Chem Soc 2022; 144:9883-9892. [DOI: 10.1021/jacs.2c02645] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Xuan Yang
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Sven M. Elbert
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Frank Rominger
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Michael Mastalerz
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
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46
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Windom ZW, Perera A, Bartlett RJ. Examining fundamental and excitation gaps at the thermodynamic limit: A combined (QTP) DFT and coupled cluster study on trans-polyacetylene and polyacene. J Chem Phys 2022; 156:204308. [DOI: 10.1063/5.0086158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Interest in ab initio property prediction of π-conjugated polymers for technological applications places significant demand on “cost-effective” and conceptual computational methods, particularly effective, one-particle theories. This is particularly relevant in the case of Kohn–Sham Density Functional Theory (KS-DFT) and its new competitors that arise from correlated orbital theory, the latter defining the QTP family of DFT functionals. This study presents large, ab initio equation of motion-coupled cluster calculations using the massively parallel ACESIII to target the fundamental bandgap of two prototypical organic polymers, trans-polyacetylene (tPA) and polyacene (Ac), and provides an assessment of the new quantum theory project (QTP) functionals for this problem. Further results focusing on the 1 A g (1 A g), 1 B u (1 B2 u), and 3 B u (3 B2 u) excited states of tPA (Ac) are also presented. By performing calculations on oligomers of increasing size, extrapolations to the thermodynamic limit for the fundamental and all excitation gaps, as well as estimations of the exciton binding energy, are made. Thermodynamic-limit results for a combination of “optimal” and model geometries are presented. Calculated results for excitations that are adequately described using a single-particle model illustrate the benefits of requiring a KS-DFT functional to satisfy the Bartlett ionization potential theorem.
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Affiliation(s)
- Zachary W. Windom
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435, USA
| | - Ajith Perera
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435, USA
| | - Rodney J. Bartlett
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435, USA
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47
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Baerends EJ. Chemical potential, derivative discontinuity, fractional electrons, jump of the Kohn-Sham potential, atoms as thermodynamic open systems, and other (mis)conceptions of the density functional theory of electrons in molecules. Phys Chem Chem Phys 2022; 24:12745-12766. [PMID: 35593143 DOI: 10.1039/d2cp01585d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Many references exist in the density functional theory (DFT) literature to the chemical potential of the electrons in an atom or a molecule. The origin of this notion has been the identification of the Lagrange multiplier μ = ∂E/∂N in the Euler-Lagrange variational equation for the ground state density as the chemical potential of the electrons. We first discuss why the Lagrange multiplier in this case is an arbitrary constant and therefore cannot be a physical characteristic of an atom or molecule. The switching of the energy derivative ("chemical potential") from -I to -A when the electron number crosses the integer, called integer discontinuity or derivative discontinuity, is not physical but only occurs when the nonphysical noninteger electron systems and the corresponding energy and derivative ∂E/∂N are chosen in a specific discontinuous way. The question is discussed whether in fact the thermodynamical concept of a chemical potential can be defined for the electrons in such few-electron systems as atoms and molecules. The conclusion is that such systems lack important characteristics of thermodynamic systems and do not afford the definition of a chemical potential. They also cannot be considered as analogues of the open systems of thermodynamics that can exchange particles with an environment (a particle bath or other members of a Gibbsian ensemble). Thermodynamical (statistical mechanical) concepts like chemical potential, open systems, grand canonical ensemble etc. are not applicable to a few electron system like an atom or molecule. A number of topics in DFT are critically reviewed in light of these findings: jumps in the Kohn-Sham potential when crossing an integer number of electrons, the band gap problem, the deviation-from-straight-lines error, and the role of ensembles in DFT.
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48
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Zhang L, Shu Y, Xing C, Chen X, Sun S, Huang Y, Truhlar DG. Recommendation of Orbitals for G0W0 Calculations on Molecules and Crystals. J Chem Theory Comput 2022; 18:3523-3537. [PMID: 35580263 DOI: 10.1021/acs.jctc.2c00242] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The many-body GW approximation, especially the G0W0 method, has been widely used for condensed matter and molecules to calculate quasiparticle energies for ionization, electron attachment, and band gaps. Because G0W0 calculations are well-known to have a strong dependence on the orbitals, the goal of the present work is to provide guidance on the choice of density functional used to generate orbitals and to recommend a choice that gives the most broadly accurate results. We have systematically investigated the dependence of G0W0 calculations on the orbitals for 100 molecules and 8 crystals by considering orbitals obtained with a diverse set of Kohn-Sham (KS) and generalized KS (GKS) functionals (63 functionals plus Hartree-Fock). The percentage of Hartree-Fock exchange employed in density functionals has been found to have strong influence on the predicted molecular ionization energy and crystal fundamental band gaps (with optimum values between 40 and 56%), but to have less effect on predicting molecular electron affinities. The low cost of the Gaussian implementation, even with hybrid functionals in periodic calculations, the better performance of global hybrids as compared to range-separated hybrids of either than screened exchange or long-range-corrected type, and the relatively low cost of global-hybrid-functional periodic calculations using Gaussians means that one can employ global-hybrid functionals at a very reasonable cost and obtain more accurate band gaps of semiconductors than are obtained by the methods currently widely employed, namely local gradient approximations. We single out three global-hybrid functionals that give especially good results for both molecules (100 in the test set) and crystals (8 in the test set, for all of which our benchmark data are the proper band gap rather than an optical band gap uncorrected for exciton effects).
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Affiliation(s)
- Linyao Zhang
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, PR China.,School of Chemistry and Chemical Engineering, Harbin Institute of Technology, Harbin 150001, PR China
| | - Yinan Shu
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Chang Xing
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, PR China.,School of Astronautics, Harbin Institute of Technology, Harbin 150001, PR China
| | - Xiye Chen
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, PR China.,School of Chemistry and Chemical Engineering, Harbin Institute of Technology, Harbin 150001, PR China
| | - Shaozeng Sun
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, PR China
| | - Yudong Huang
- School of Chemistry and Chemical Engineering, Harbin Institute of Technology, Harbin 150001, PR China
| | - Donald G Truhlar
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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49
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Shirai S, Horiba T, Hirai H. Calculation of Core-Excited and Core-Ionized States Using Variational Quantum Deflation Method and Applications to Photocatalyst Modeling. ACS OMEGA 2022; 7:10840-10853. [PMID: 35382310 PMCID: PMC8973155 DOI: 10.1021/acsomega.2c01053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/03/2022] [Indexed: 06/14/2023]
Abstract
The possibility of performing quantum-chemical calculations using quantum computers has attracted much interest. Variational quantum deflation (VQD) is a quantum-classical hybrid algorithm for the calculation of excited states with noisy intermediate-scale quantum devices. Although the validity of this method has been demonstrated, there have been few practical applications, primarily because of the uncertain effect of calculation conditions on the results. In the present study, calculations of the core-excited and core-ionized states for common molecules based on the VQD method were examined using a classical computer, focusing on the effects of the weighting coefficients applied in the penalty terms of the cost function. Adopting a simplified procedure for estimating the weighting coefficients based on molecular orbital levels allowed these core-level states to be successfully calculated. The O 1s core-ionized state for a water molecule was calculated with various weighting coefficients, and the resulting ansatz states were systematically examined. The application of this technique to functional materials was demonstrated by calculating the core-level states for titanium dioxide (TiO2) and nitrogen-doped TiO2 models. The results demonstrate that VQD calculations employing an appropriate cost function can be applied to the analysis of functional materials in conjunction with an experimental approach.
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50
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Gould T, Hashimi Z, Kronik L, Dale SG. Single Excitation Energies Obtained from the Ensemble "HOMO-LUMO Gap": Exact Results and Approximations. J Phys Chem Lett 2022; 13:2452-2458. [PMID: 35266399 DOI: 10.1021/acs.jpclett.2c00042] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
In calculations based on density functional theory, the "HOMO-LUMO gap" (difference between the highest occupied and lowest unoccupied molecular orbital energies) is often used as a low-cost, ad hoc approximation for the lowest excitation energy. Here we show that a simple correction based on rigorous ensemble density functional theory makes the HOMO-LUMO gap exact in principle and significantly more accurate in practice. The introduced perturbative ensemble density functional theory approach predicts different and useful values for singlet-singlet and singlet-triplet excitations, using semilocal and hybrid approximations. Excitation energies are similar in quality to time-dependent density functional theory, especially at high fractions of exact exchange. The approach therefore offers an easy-to-implement and low-cost route to robust prediction of molecular excitation energies.
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Affiliation(s)
- Tim Gould
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, QLD 4111, Australia
| | - Zahed Hashimi
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, QLD 4111, Australia
| | - Leeor Kronik
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovoth 76100, Israel
| | - Stephen G Dale
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, QLD 4111, Australia
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