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Cao T, Liu Y, Gao C, Yuan Y, Chen W, Zhang T. Understanding Nanoscale Interactions between Minerals and Microbes: Opportunities for Green Remediation of Contaminated Sites. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024. [PMID: 39093060 DOI: 10.1021/acs.est.4c05324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
Abstract
In situ contaminant degradation and detoxification mediated by microbes and minerals is an important element of green remediation. Improved understanding of microbe-mineral interactions on the nanoscale offers promising opportunities to further minimize the environmental and energy footprints of site remediation. In this Perspective, we describe new methodologies that take advantage of an array of multidisciplinary tools─including multiomics-based analysis, bioinformatics, machine learning, gene editing, real-time spectroscopic and microscopic analysis, and computational simulations─to identify the key microbial drivers in the real environments, and to characterize in situ the dynamic interplay between minerals and microbes with high spatiotemporal resolutions. We then reflect on how the knowledge gained can be exploited to modulate the binding, electron transfer, and metabolic activities at the microbe-mineral interfaces, to develop new in situ contaminant degradation and detoxication technologies with combined merits of high efficacy, material longevity, and low environmental impacts. Two main strategies are proposed to maximize the synergy between minerals and microbes, including using mineral nanoparticles to enhance the versatility of microorganisms (e.g., tolerance to environmental stresses, growth and metabolism, directed migration, selectivity, and electron transfer), and using microbes to synthesize and regenerate highly dispersed nanostructures with desired structural/surface properties and reactivity.
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Affiliation(s)
- Tianchi Cao
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, Tianjin 300350, P. R. China
| | - Yaqi Liu
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, Tianjin 300350, P. R. China
| | - Cheng Gao
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, Tianjin 300350, P. R. China
| | - Yuxin Yuan
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, Tianjin 300350, P. R. China
| | - Wei Chen
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, Tianjin 300350, P. R. China
| | - Tong Zhang
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, Tianjin 300350, P. R. China
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Wang CQ, Yao B, Wei JA, Gao XY, Zhang DY, Pan XL. Mechanisms for enhanced lignin humification with reduced organic matter loss by goethite in biogas residue composting. BIORESOURCE TECHNOLOGY 2023; 389:129795. [PMID: 37783240 DOI: 10.1016/j.biortech.2023.129795] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 08/29/2023] [Accepted: 09/18/2023] [Indexed: 10/04/2023]
Abstract
In this study, effects of three iron (oxyhydr)oxides on the biogas residue composting, i.e., composting with goethite (CFe1), hematite (CFe2) or magnetite (CFe3), were investigated. Results showed that composting performance of CFe1 was much better than those of CFe2 and CFe3. Addition of goethite increased temperature of CFe1 and enhanced lignin humification. More than 31.49% of Fe(III) in goethite was reduced to amorphous Fe(II) during the composting, suggesting that goethite worked as electron acceptor for microbial metabolism and heat generation. The functional bacteria Chloroflexi and Actinobacteria, and genes encoding key enzymes (AA1 family), which play essential roles in humification of lignin, were enriched in CFe1. Besides, goethite reduced 10.96% organic matter (OM) loss probably by increasing the molecular size and aggregation of OM for its protection during the composting. This study shows that adding goethite is an efficient strategy to enhancing the humification of lignin-rich biowaste.
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Affiliation(s)
- Cai-Qin Wang
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China; Mizuda Group Co. LTD, Huzhou 313000, China
| | - Bing Yao
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China
| | - Ji-An Wei
- Mizuda Group Co. LTD, Huzhou 313000, China
| | - Xin-Yi Gao
- Mizuda Group Co. LTD, Huzhou 313000, China
| | - Dao-Yong Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China.
| | - Xiang-Liang Pan
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Hangzhou 310014, China
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Xia Q, Liu R, Chen X, Chen Z, Zhu JJ. In Vivo Voltammetric Imaging of Metal Nanoparticle-Catalyzed Single-Cell Electron Transfer by Fermi Level-Responsive Graphene. RESEARCH (WASHINGTON, D.C.) 2023; 6:0145. [PMID: 37223464 PMCID: PMC10200910 DOI: 10.34133/research.0145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 04/20/2023] [Indexed: 05/25/2023]
Abstract
Metal nanomaterials can facilitate microbial extracellular electron transfer (EET) in the electrochemically active biofilm. However, the role of nanomaterials/bacteria interaction in this process is still unclear. Here, we reported the single-cell voltammetric imaging of Shewanella oneidensis MR-1 at the single-cell level to elucidate the metal-enhanced EET mechanism in vivo by the Fermi level-responsive graphene electrode. Quantified oxidation currents of ~20 fA were observed from single native cells and gold nanoparticle (AuNP)-coated cells in linear sweep voltammetry analysis. On the contrary, the oxidation potential was reduced by up to 100 mV after AuNP modification. It revealed the mechanism of AuNP-catalyzed direct EET decreasing the oxidation barrier between the outer membrane cytochromes and the electrode. Our method offered a promising strategy to understand the nanomaterials/bacteria interaction and guide the rational construction of EET-related microbial fuel cells.
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Affiliation(s)
- Qing Xia
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering,
Nanjing University, Nanjing 210023, P. R. China
| | - Rui Liu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering,
Nanjing University, Nanjing 210023, P. R. China
| | - Xueqin Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering,
Nanjing University, Nanjing 210023, P. R. China
| | - Zixuan Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering,
Nanjing University, Nanjing 210023, P. R. China
| | - Jun-Jie Zhu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering,
Nanjing University, Nanjing 210023, P. R. China
- Shenzhen Research Institute of Nanjing University, Shenzhen 518000, P. R. China
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Bañuelos JL, Borguet E, Brown GE, Cygan RT, DeYoreo JJ, Dove PM, Gaigeot MP, Geiger FM, Gibbs JM, Grassian VH, Ilgen AG, Jun YS, Kabengi N, Katz L, Kubicki JD, Lützenkirchen J, Putnis CV, Remsing RC, Rosso KM, Rother G, Sulpizi M, Villalobos M, Zhang H. Oxide- and Silicate-Water Interfaces and Their Roles in Technology and the Environment. Chem Rev 2023; 123:6413-6544. [PMID: 37186959 DOI: 10.1021/acs.chemrev.2c00130] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Interfacial reactions drive all elemental cycling on Earth and play pivotal roles in human activities such as agriculture, water purification, energy production and storage, environmental contaminant remediation, and nuclear waste repository management. The onset of the 21st century marked the beginning of a more detailed understanding of mineral aqueous interfaces enabled by advances in techniques that use tunable high-flux focused ultrafast laser and X-ray sources to provide near-atomic measurement resolution, as well as by nanofabrication approaches that enable transmission electron microscopy in a liquid cell. This leap into atomic- and nanometer-scale measurements has uncovered scale-dependent phenomena whose reaction thermodynamics, kinetics, and pathways deviate from previous observations made on larger systems. A second key advance is new experimental evidence for what scientists hypothesized but could not test previously, namely, interfacial chemical reactions are frequently driven by "anomalies" or "non-idealities" such as defects, nanoconfinement, and other nontypical chemical structures. Third, progress in computational chemistry has yielded new insights that allow a move beyond simple schematics, leading to a molecular model of these complex interfaces. In combination with surface-sensitive measurements, we have gained knowledge of the interfacial structure and dynamics, including the underlying solid surface and the immediately adjacent water and aqueous ions, enabling a better definition of what constitutes the oxide- and silicate-water interfaces. This critical review discusses how science progresses from understanding ideal solid-water interfaces to more realistic systems, focusing on accomplishments in the last 20 years and identifying challenges and future opportunities for the community to address. We anticipate that the next 20 years will focus on understanding and predicting dynamic transient and reactive structures over greater spatial and temporal ranges as well as systems of greater structural and chemical complexity. Closer collaborations of theoretical and experimental experts across disciplines will continue to be critical to achieving this great aspiration.
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Affiliation(s)
- José Leobardo Bañuelos
- Department of Physics, The University of Texas at El Paso, El Paso, Texas 79968, United States
| | - Eric Borguet
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Gordon E Brown
- Department of Earth and Planetary Sciences, The Stanford Doerr School of Sustainability, Stanford University, Stanford, California 94305, United States
| | - Randall T Cygan
- Department of Soil and Crop Sciences, Texas A&M University, College Station, Texas 77843, United States
| | - James J DeYoreo
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Patricia M Dove
- Department of Geosciences, Department of Chemistry, Department of Materials Science and Engineering, Virginia Tech, Blacksburg, Virginia 24060, United States
| | - Marie-Pierre Gaigeot
- Université Paris-Saclay, Univ Evry, CNRS, LAMBE UMR8587, 91025 Evry-Courcouronnes, France
| | - Franz M Geiger
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Julianne M Gibbs
- Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2Canada
| | - Vicki H Grassian
- Department of Chemistry and Biochemistry, University of California, San Diego, California 92093, United States
| | - Anastasia G Ilgen
- Geochemistry Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Young-Shin Jun
- Department of Energy, Environmental & Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United States
| | - Nadine Kabengi
- Department of Geosciences, Georgia State University, Atlanta, Georgia 30303, United States
| | - Lynn Katz
- Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - James D Kubicki
- Department of Earth, Environmental & Resource Sciences, The University of Texas at El Paso, El Paso, Texas 79968, United States
| | - Johannes Lützenkirchen
- Karlsruher Institut für Technologie (KIT), Institut für Nukleare Entsorgung─INE, Eggenstein-Leopoldshafen 76344, Germany
| | - Christine V Putnis
- Institute for Mineralogy, University of Münster, Münster D-48149, Germany
| | - Richard C Remsing
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, United States
| | - Kevin M Rosso
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Gernot Rother
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Marialore Sulpizi
- Department of Physics, Ruhr Universität Bochum, NB6, 65, 44780, Bochum, Germany
| | - Mario Villalobos
- Departamento de Ciencias Ambientales y del Suelo, LANGEM, Instituto De Geología, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico
| | - Huichun Zhang
- Department of Civil and Environmental Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
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5
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Tang Z, Liu R, Chen X, Gao D, Zhang JR, Zhu JJ, Chen Z. Plasmonic Probing Single-Cell Bio-Current Waves with a Shrinking Magnetite Nanoprobe. ACS NANO 2022; 16:20842-20850. [PMID: 36475619 DOI: 10.1021/acsnano.2c08223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Probing of the single-cell level extracellular electron transfer highlights the maximum output current for microbial fuel cells (MFCs) at hundreds of femtoampere per cell, which is difficult to achieve by existing devices. Past studies focus on the external factors for boosting charge-extraction efficiency from bacteria. Here, we elucidate the intracellular factors that determine this output limit by monitoring the respiratory-driven shrinking kinetics of a single magnetite nanoprobe immobilized on a single Shewanella oneidensis MR-1 cell with plasmonic imaging. Quantified dissolving of nanoprobes unveils a previously undescribed bio-current fluctuation between 0 and 2.7 fA on a ∼40 min cycle. Simultaneously tracing of endogenous oscillations indicates that the bio-current waves are correlated with the periodic cellular electrokinesis. The unsynchronized electron transfer capability in the cell population results in the mean current of 0.24 fA per cell, significantly smaller than in single cells. It explains why the averaged output current of MFCs cannot reach the measured single-cell currents. This work offers a different perspective to improve the power output by extending the active episodes of the bio-current waves.
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Affiliation(s)
- Zhuodong Tang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, People's Republic of China
| | - Rui Liu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, People's Republic of China
| | - Xueqin Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, People's Republic of China
| | - Di Gao
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, People's Republic of China
| | - Jian-Rong Zhang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, People's Republic of China
| | - Jun-Jie Zhu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, People's Republic of China
- Shenzhen Research Institute of Nanjing University, Shenzhen518000, People's Republic of China
| | - Zixuan Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, People's Republic of China
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Shahbaz A, Hussain N, Saleem MZ, Saeed MU, Bilal M, Iqbal HM. Nanoparticles as stimulants for efficient generation of biofuels and renewables. FUEL 2022. [DOI: 10.1016/j.fuel.2022.123724] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Zheng Z, Cao H, Meng J, Xiao Y, Ulstrup J, Zhang J, Zhao F, Engelbrekt C, Xiao X. Synthesis and Structure of a Two-Dimensional Palladium Oxide Network on Reduced Graphene Oxide. NANO LETTERS 2022; 22:4854-4860. [PMID: 35639869 DOI: 10.1021/acs.nanolett.2c01226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
New nanostructures often reflect new and exciting properties. Here, we present an two-dimensional, hitherto unreported PdO square network with lateral dimensions up to hundreds of nanometers growing on reduced graphene oxide (rGO), forming a hybrid nanofilm. An intermediate state of dissolved Pd(0) in the bacterium S. oneidensis MR-1 is pivotal in the biosynthesis and inspires an abiotic synthesis. The PdO network shows a lattice spacing of 0.5 nm and a thickness of 1.8 nm on both sides of an rGO layer and is proposed to be cubic or tetragonal crystal, as confirmed by structural simulations. A 2D silver oxide analog with a similar structure is also obtained using an analogous abiotic synthesis. Our study thus opens a simple route to a whole new class of 2D metal oxides on rGO as promising candidates for graphene superlattices with unexplored properties and potential applications for example in electronics, sensing, and energy conversion.
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Affiliation(s)
- Zhiyong Zheng
- Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, Kongens Lyngby, DK-2800, Denmark
| | - Huili Cao
- Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, Kongens Lyngby, DK-2800, Denmark
| | - Jie Meng
- Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, Kongens Lyngby, DK-2800, Denmark
| | - Yong Xiao
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, Xiamen, 361021, China
| | - Jens Ulstrup
- Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, Kongens Lyngby, DK-2800, Denmark
| | - Jingdong Zhang
- Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, Kongens Lyngby, DK-2800, Denmark
| | - Feng Zhao
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, Xiamen, 361021, China
| | - Christian Engelbrekt
- Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, Kongens Lyngby, DK-2800, Denmark
| | - Xinxin Xiao
- Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, Kongens Lyngby, DK-2800, Denmark
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Xiang Y, Guo Y, Liu G, Liu Y, Song M, Shi J, Hu L, Yin Y, Cai Y, Jiang G. Particle-Bound Hg(II) is Available for Microbial Uptake as Revealed by a Whole-Cell Biosensor. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:6754-6764. [PMID: 35502862 DOI: 10.1021/acs.est.1c08946] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Particle-bound mercury (HgP), ubiquitously present in aquatic environments, can be methylated into highly toxic methylmercury, but it remains challenging to assess its bioavailability. In this study, we developed anEscherichia coli-based whole-cell biosensor to probe the microbial uptake of inorganic Hg(II) and assess the bioavailability of HgP sorbed on natural and model particles. This biosensor can quantitatively distinguish the contribution of dissolved Hg(II) and HgP to intracellular Hg. Results showed that the microbial uptake of HgP was ubiquitous in the environment, as evidenced by the bioavailability of sorbed-Hg(II) onto particulate matter and model particles (Fe2O3, Fe3O4, Al2O3, and SiO2). In both oxic and anoxic environments, HgP was an important Hg(II) source for microbial uptake, with enhanced bioavailability under anoxic conditions. The composition of particles significantly affected the microbial uptake of HgP, with higher bioavailability being observed for Fe2O3 and lower for Al2O3 particles. The bioavailability of HgP varied also with the size of particles. In addition, coating with humic substances and model organic compound (cysteine) on Fe2O3 particles decreased the bioavailability of HgP. Overall, our findings highlight the role of HgP in Hg biogeochemical cycling and shed light on the enhanced Hg-methylation in settling particles and sediments in aquatic environments.
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Affiliation(s)
- Yuping Xiang
- Laboratory of Environmental Nanotechnology and Health Effect, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yingying Guo
- Laboratory of Environmental Nanotechnology and Health Effect, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guangliang Liu
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
- Institute of Environment and Health, Jianghan University, Wuhan 430056, China
| | - Yanwei Liu
- Laboratory of Environmental Nanotechnology and Health Effect, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Maoyong Song
- Laboratory of Environmental Nanotechnology and Health Effect, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Jianbo Shi
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Ligang Hu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Yongguang Yin
- Laboratory of Environmental Nanotechnology and Health Effect, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Institute of Environment, Hangzhou Institute for Advanced Study, UCAS, Hangzhou 310024, China
| | - Yong Cai
- Laboratory of Environmental Nanotechnology and Health Effect, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
| | - Guibin Jiang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
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Then A, Ewald J, Söllner N, Cooper RE, Küsel K, Ibrahim B, Schuster S. Agent-based modelling of iron cycling bacteria provides a framework for testing alternative environmental conditions and modes of action. ROYAL SOCIETY OPEN SCIENCE 2022; 9:211553. [PMID: 35620008 PMCID: PMC9115035 DOI: 10.1098/rsos.211553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 04/27/2022] [Indexed: 05/03/2023]
Abstract
Iron-reducing and iron-oxidizing bacteria are of interest in a variety of environmental and industrial applications. Such bacteria often co-occur at oxic-anoxic gradients in aquatic and terrestrial habitats. In this paper, we present the first computational agent-based model of microbial iron cycling, between the anaerobic ferric iron (Fe3+)-reducing bacteria Shewanella spp. and the microaerophilic ferrous iron (Fe2+)-oxidizing bacteria Sideroxydans spp. By including the key processes of reduction/oxidation, movement, adhesion, Fe2+-equilibration and nanoparticle formation, we derive a core model which enables hypothesis testing and prediction for different environmental conditions including temporal cycles of oxic and anoxic conditions. We compared (i) combinations of different Fe3+-reducing/Fe2+-oxidizing modes of action of the bacteria and (ii) system behaviour for different pH values. We predicted that the beneficial effect of a high number of iron-nanoparticles on the total Fe3+ reduction rate of the system is not only due to the faster reduction of these iron-nanoparticles, but also to the nanoparticles' additional capacity to bind Fe2+ on their surfaces. Efficient iron-nanoparticle reduction is confined to pH around 6, being twice as high than at pH 7, whereas at pH 5 negligible reduction takes place. Furthermore, in accordance with experimental evidence our model showed that shorter oxic/anoxic periods exhibit a faster increase of total Fe3+ reduction rate than longer periods.
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Affiliation(s)
- Andre Then
- Department of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany
| | - Jan Ewald
- Department of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany
| | - Natalie Söllner
- Department of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany
| | - Rebecca E. Cooper
- Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Kirsten Küsel
- Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
- German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Bashar Ibrahim
- Centre for Applied Mathematics and Bioinformatics, and Department of Mathematics and Natural Sciences, Gulf University for Science and Technology, Hawally 32093, Kuwait
- European Virus Bioinformatics Center, Leutragraben 1 07743 Jena, Germany
| | - Stefan Schuster
- Department of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany
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Jia X, Ma L, Liu J, Liu P, Yu L, Zhou J, Li W, Zhou W, Dong Z. Reduction of antimony mobility from Sb-rich smelting slag by Shewanella oneidensis: Integrated biosorption and precipitation. JOURNAL OF HAZARDOUS MATERIALS 2022; 426:127385. [PMID: 34929592 DOI: 10.1016/j.jhazmat.2021.127385] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 09/14/2021] [Accepted: 09/27/2021] [Indexed: 06/14/2023]
Abstract
The dissimilatory Fe(III)-reducing bacteria play a significant role in the mobility of antimony (Sb) under reducing environment. Sb-rich smelting slag is iron (Fe)-containing antimonic mine waste, which is one of the main sources of antimony pollution. In this study, the soluble antimony reacted with Fe(III) by S. oneidensis (Shewanella oneidensis strain MR-1) was performed in reduction condition, then the dissolution behavior of the Sb-rich smelting slag with S. oneidensis was investigated. The results showed that the released Sb was immobilized by S. oneidensis and the strain adsorbed Sb(III) preferentially. Sb(V) can be reduced by S. oneidensis without aqueous Fe. In the presence of Fe(III), S. oneidensis mediated Sb bio-adsorption and the chemical redox of Sb-Fe occurred simultaneously. Sb was co-precipitated with Fe to form the Sb(V)-O-Fe(III) secondary mineral, which was identified as the bidentate mononuclear edge-sharing structure by extended X-ray absorption fine structure (EXAFS) analysis. These results suggest that S. oneidensis has a positive effect on the immobilization and minimizing toxicity of antimony in anoxic soil and groundwater, which provides a theoretical basis for the treatment of antimony contamination.
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Affiliation(s)
- Xiaocen Jia
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
| | - Liyuan Ma
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
| | - Jing Liu
- College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Peng Liu
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
| | - Lu Yu
- Qiaokou Branch of Wuhan Ecological Environment Bureau, Wuhan 430000, China
| | - Jianwei Zhou
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China; Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, Wuhan 430000, China.
| | - Wanyu Li
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
| | - Weiqing Zhou
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
| | - Zichao Dong
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
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11
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Parreira P, Martins MCL. The biophysics of bacterial infections: Adhesion events in the light of force spectroscopy. Cell Surf 2021; 7:100048. [PMID: 33665520 PMCID: PMC7898176 DOI: 10.1016/j.tcsw.2021.100048] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2018] [Revised: 08/10/2020] [Accepted: 12/03/2020] [Indexed: 02/08/2023] Open
Abstract
Bacterial infections are the most eminent public health challenge of the 21st century. The primary step leading to infection is bacterial adhesion to the surface of host cells or medical devices, which is mediated by a multitude of molecular interactions. At the interface of life sciences and physics, last years advances in atomic force microscopy (AFM)-based force spectroscopy techniques have made possible to measure the forces driving bacteria-cell and bacteria-materials interactions on a single molecule/cell basis (single molecule/cell force spectroscopy). Among the bacteria-(bio)materials surface interactions, the life-threatening infections associated to medical devices involving Staphylococcus aureus and Escherichia coli are the most eminent. On the other hand, Pseudomonas aeruginosa binding to the pulmonary and urinary tract or the Helicobacter pylori binding to the gastric mucosa, are classical examples of bacteria-host cell interactions that end in serious infections. As we approach the end of the antibiotic era, acquisition of a deeper knowledge of the fundamental forces involved in bacteria - host cells/(bio)materials surface adhesion is crucial for the identification of new ligand-binding events and its assessment as novel targets for alternative anti-infective therapies. This article aims to highlight the potential of AFM-based force spectroscopy for new targeted therapies development against bacterial infections in which adhesion plays a pivotal role and does not aim to be an extensive overview on the AFM technical capabilities and theory of single molecule force spectroscopy.
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Affiliation(s)
- Paula Parreira
- INEB – Instituto de Engenharia Biomédica, Universidade do Porto, Portugal
- i3S – Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal
| | - M. Cristina L. Martins
- INEB – Instituto de Engenharia Biomédica, Universidade do Porto, Portugal
- i3S – Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal
- ICBAS – Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal
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12
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Evaluation of a novel, multi-functional inhibitor compound for prevention of biofilm formation on carbon steel in marine environments. Sci Rep 2021; 11:15697. [PMID: 34344924 PMCID: PMC8333064 DOI: 10.1038/s41598-021-94827-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 07/06/2021] [Indexed: 01/20/2023] Open
Abstract
Chemical biocides remain the most effective mitigation strategy against microbiologically influenced corrosion (MIC), one of the costliest and most pervasive forms of corrosion in industry. However, toxicity and environmental concerns associated with these compounds are encouraging the development of more environmentally friendly MIC inhibitors. In this study, we evaluated the antimicrobial effect of a novel, multi-functional organic corrosion inhibitor (OCI) compound, cetrimonium trans-4-hydroxy-cinnamate (CTA-4OHcinn). Attachment of three bacterial strains, Shewanella chilikensis, Pseudomonas balearica and Klebsiella pneumoniae was evaluated on wet-ground (120 grit finish) and pre-oxidised carbon steel surfaces (AISI 1030), in the presence and absence of the new OCI compound. Our study revealed that all strains preferentially attached to pre-oxidised surfaces as indicated by confocal laser scanning microscopy, scanning electron microscopy and standard colony forming unit (CFU) quantification assays. The inhibitor compound at 10 mM demonstrated 100% reduction in S. chilikensis attachment independent of initial surface condition, while the other two strains were reduced by at least 99.7% of the original viable cell number. Our results demonstrate that CTA-4OHcinn is biocidal active and has promise as a multifunctional, environmentally sound MIC inhibitor for industrial applications.
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13
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Zhang S, Wang L, Wu L, Li Z, Yang B, Hou Y, Lei L, Cheng S, He Q. Deciphering Single-Bacterium Adhesion Behavior Modulated by Extracellular Electron Transfer. NANO LETTERS 2021; 21:5105-5115. [PMID: 34086465 DOI: 10.1021/acs.nanolett.1c01062] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
For bacterial adhesion and biofilm formation, a thorough understanding of the mechanism and effective modulating is lacking due to the complex extracellular electron transfer (EET) at bacteria-surface interfaces. Here, we explore the adhesion behavior of a model electroactive bacteria under various metabolic conditions by an integrated electrochemical single-cell force microscopy system. A nonlinear model between bacterial adhesion force and electric field intensity is established, which provides a theoretical foundation for precise tuning of bacterial adhesion strength by the surface potential and the direction and flux of electron flow. In particular, based on quantitative analyses with equivalent charge distribution modeling and wormlike chain numerical simulations, it is demonstrated that the chain conformation and unfolding events of outer membrane appendages are dominantly impacted by the dynamic bacterial EET processes. This reveals how the anisotropy of bacterial conductive structure can translate into the desired adhesion behavior in different scenarios.
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Affiliation(s)
- Shuomeng Zhang
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
- Zhejiang Provincial Key Laboratory of Advanced Chemical Engineering Manufacture Technology, Zhejiang University, Hangzhou, Zhejiang 310027, China
| | - Lei Wang
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
| | - Liang Wu
- School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
| | - Zhongjian Li
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
- Institute of Zhejiang University, Quzhou, Quzhou 32400, China
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, Zhejiang University, Hangzhou 310027, China
| | - Bin Yang
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
- Institute of Zhejiang University, Quzhou, Quzhou 32400, China
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, Zhejiang University, Hangzhou 310027, China
| | - Yang Hou
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
- Institute of Zhejiang University, Quzhou, Quzhou 32400, China
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, Zhejiang University, Hangzhou 310027, China
| | - Lecheng Lei
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
- Institute of Zhejiang University, Quzhou, Quzhou 32400, China
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, Zhejiang University, Hangzhou 310027, China
| | - Shaoan Cheng
- College of Energy Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
| | - Qinggang He
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China
- Zhejiang Provincial Key Laboratory of Advanced Chemical Engineering Manufacture Technology, Zhejiang University, Hangzhou, Zhejiang 310027, China
- Ningbo Research Institute, Zhejiang University, Ningbo, Zhejiang 315100, China
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14
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Huang J, Jones A, Waite TD, Chen Y, Huang X, Rosso KM, Kappler A, Mansor M, Tratnyek PG, Zhang H. Fe(II) Redox Chemistry in the Environment. Chem Rev 2021; 121:8161-8233. [PMID: 34143612 DOI: 10.1021/acs.chemrev.0c01286] [Citation(s) in RCA: 166] [Impact Index Per Article: 55.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Iron (Fe) is the fourth most abundant element in the earth's crust and plays important roles in both biological and chemical processes. The redox reactivity of various Fe(II) forms has gained increasing attention over recent decades in the areas of (bio) geochemistry, environmental chemistry and engineering, and material sciences. The goal of this paper is to review these recent advances and the current state of knowledge of Fe(II) redox chemistry in the environment. Specifically, this comprehensive review focuses on the redox reactivity of four types of Fe(II) species including aqueous Fe(II), Fe(II) complexed with ligands, minerals bearing structural Fe(II), and sorbed Fe(II) on mineral oxide surfaces. The formation pathways, factors governing the reactivity, insights into potential mechanisms, reactivity comparison, and characterization techniques are discussed with reference to the most recent breakthroughs in this field where possible. We also cover the roles of these Fe(II) species in environmental applications of zerovalent iron, microbial processes, biogeochemical cycling of carbon and nutrients, and their abiotic oxidation related processes in natural and engineered systems.
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Affiliation(s)
- Jianzhi Huang
- Department of Civil and Environmental Engineering, Case Western Reserve University, 2104 Adelbert Road, Cleveland, Ohio 44106, United States
| | - Adele Jones
- UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - T David Waite
- UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Yiling Chen
- Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Xiaopeng Huang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Kevin M Rosso
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Andreas Kappler
- Geomicrobiology, Center for Applied Geosciences, University of Tuebingen, 72076 Tuebingen, Germany
| | - Muammar Mansor
- Geomicrobiology, Center for Applied Geosciences, University of Tuebingen, 72076 Tuebingen, Germany
| | - Paul G Tratnyek
- School of Public Health, Oregon Health & Science University, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, United States
| | - Huichun Zhang
- Department of Civil and Environmental Engineering, Case Western Reserve University, 2104 Adelbert Road, Cleveland, Ohio 44106, United States
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15
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Castelein SM, Aarts TF, Schleppi J, Hendrikx R, Böttger AJ, Benz D, Marechal M, Makaya A, Brouns SJJ, Schwentenwein M, Meyer AS, Lehner BAE. Iron can be microbially extracted from Lunar and Martian regolith simulants and 3D printed into tough structural materials. PLoS One 2021; 16:e0249962. [PMID: 33909656 PMCID: PMC8081250 DOI: 10.1371/journal.pone.0249962] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2020] [Accepted: 03/26/2021] [Indexed: 11/23/2022] Open
Abstract
In-situ resource utilization (ISRU) is increasingly acknowledged as an essential requirement for the construction of sustainable extra-terrestrial colonies. Even with decreasing launch costs, the ultimate goal of establishing colonies must be the usage of resources found at the destination of interest. Typical approaches towards ISRU are often constrained by the mass and energy requirements of transporting processing machineries, such as rovers and massive reactors, and the vast amount of consumables needed. Application of self-reproducing bacteria for the extraction of resources is a promising approach to reduce these pitfalls. In this work, the bacterium Shewanella oneidensis was used to reduce three different types of Lunar and Martian regolith simulants, allowing for the magnetic extraction of iron-rich materials. The combination of bacterial treatment and magnetic extraction resulted in a 5.8-times higher quantity of iron and 43.6% higher iron concentration compared to solely magnetic extraction. The materials were 3D printed into cylinders and the mechanical properties were tested, resulting in a 400% improvement in compressive strength in the bacterially treated samples. This work demonstrates a proof of concept for the on-demand production of construction and replacement parts in space exploration.
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Affiliation(s)
| | - Tom F. Aarts
- Department of Bionanoscience, TU Delft, Delft, Netherlands
| | - Juergen Schleppi
- School of Engineering and Physical Sciences, Institute for Mechanical, Process and Energy Engineering, Heriot-Watt University, Edinburgh, United Kingdom
| | - Ruud Hendrikx
- Department of Materials Science and Engineering, TU Delft, Delft, Netherlands
| | - Amarante J. Böttger
- Department of Materials Science and Engineering, TU Delft, Delft, Netherlands
| | - Dominik Benz
- Department of Chemical Engineering, TU Delft, Delft, Netherlands
| | - Maude Marechal
- European Space Research and Technology Centre (ESTEC), ESA, Noordwijk, Netherlands
| | - Advenit Makaya
- European Space Research and Technology Centre (ESTEC), ESA, Noordwijk, Netherlands
| | | | | | - Anne S. Meyer
- Department of Biology, University of Rochester, Rochester, New York, United States of America
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16
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Liu L, Liu G, Zhou J, Jin R. Energy Taxis toward Redox-Active Surfaces Decreases the Transport of Electroactive Bacteria in Saturated Porous Media. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:5559-5568. [PMID: 33728915 DOI: 10.1021/acs.est.0c08355] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The fate and transport of bacteria in porous media are essential for bioremediation and water quality control. However, the influence of biological activities like extracellular electron transfer (EET) and swimming motility toward granular media on cell transport remains unknown. Here, electroactive bacteria with higher Fe(III) reduction abilities were found to demonstrate greater retention in ferrihydrite-coated sand. Increasing the concentrations of the electron donor (1-10 mM lactate), shuttle (0-50 μM anthraquinone-2,6-disulfonate), and acceptor (ferrihydrite, MnO2, or biochar) under flow conditions significantly reduced Shewanella oneidensis MR-1's mobility through redox-active porous media. The deficiency of EET ability or flagellar motion and inhibition of intracellular proton motive force, all of which are essential for energy taxis, enhanced MR-1's transport. It was proposed that EET could facilitate MR-1 to sense, tactically move toward, and attach on redox-active media surface, eventually improving its retention. Positive linear correlations were established among parameters describing MR-1's energy taxis ability (relative taxis index), cell transport behavior (dispersion coefficient and relative change of effluent percentage), and redox activity of media surface (reduction potential or electron-accepting rate), providing novel insights into the critical impacts of bacterial microscale motility on macroscale cell transport through porous media.
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Affiliation(s)
- Lecheng Liu
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, China
| | - Guangfei Liu
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, China
| | - Jiti Zhou
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, China
| | - Ruofei Jin
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, China
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17
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Isolation and screening of potassium solubilizing bacteria from saxicolous habitat and their impact on tomato growth in different soil types. Arch Microbiol 2021; 203:3147-3161. [PMID: 33818654 DOI: 10.1007/s00203-021-02284-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2020] [Revised: 03/13/2021] [Accepted: 03/16/2021] [Indexed: 10/21/2022]
Abstract
Bacteria that solubilize nutrients in the soil are commonly used as bio-inoculants for promoting the growth of different crop species. However, the influence of potassium (K) solubilizing bacteria (KSB) originating from saxicolous habitat (rock-dwelling) on plant growth has not been frequently examined. In this study, we isolated KSB from saxicolous habitats and estimated their ability to produce plant growth hormone, organic acids, and siderophore that may facilitate plant growth. Fifteen culturable saxicolous bacterial isolates with varied K solubilizing ability were isolated from two sites. Of these, four potential K solubilizers were selected and identified by 16S rRNA gene sequencing. The four bacterial isolates resembled Bacillus subtilis, Bacillus cereus, Bacillus licheniformis, and Burkholderia cenocepacia and produced different organic acids, indole acetic acid, and siderophore under in vitro conditions. Potassium solubilization differed among the bacterial isolates and was significantly influenced by K sources. Inoculation of KSB improved the tomato plant growth parameters like plant height, leaf area, total root length, root/shoot ratio, and tissue K content in sterilized and unsterilized Alfisol, and Vertisol soils under greenhouse conditions. We also observed higher residual K content in the KSB inoculated post-harvest soils. Among the four KSB isolates screened, B. licheniformis and B. cenocepacia presents an excellent prospect as bio-inoculants for improving tomato growth in different soil types. Besides these, the enriched K content in the post-harvest soils may help the growth of subsequent crops in sustainable agriculture.
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18
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Yang Q, Yang S, Liu G, Zhou B, Yu X, Yin Y, Yang J, Zhao H. Boosting the anode performance of microbial fuel cells with a bacteria-derived biological iron oxide/carbon nanocomposite catalyst. CHEMOSPHERE 2021; 268:128800. [PMID: 33143885 DOI: 10.1016/j.chemosphere.2020.128800] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 09/23/2020] [Accepted: 10/27/2020] [Indexed: 06/11/2023]
Abstract
Modifying the electrodes of microbial fuel cells (MFCs) with iron oxides can improve the bacterial attachment performances and electrocatalytic activities for energy conversion, which is of significance in the fabrication of MFCs. However, the conventional modification methods usually result in the aggregation of iron sites, producing the electrodes of poor qualities. Herein, we report a novel method for the modification of electrochemical electrodes to boost the anode performance of MFC. The Shewanella precursor adhered on carbon felt electrode was directly carbonized to form a bacteria-derived biological iron oxide/carbon (Bio-FeOx/C) nanocomposite catalyst. The large spatial separation between the bacteria, as well as those between the iron containing proteins in the bacteria, deliver a highly dispersed Bio-FeOx/C nanocomposite with good electrocatalytic activities. The excellent microbial attachment performance and electron transfer rate of the Bio-FeOx/C modified electrode significantly promote the transfer of produced electrons between bacteria and electrode. Accordingly, the MFC with the Bio-FeOx/C electrode exhibits the maximum power density of 797.0 mW m-2, much higher than that obtained with the conventional carbon felt anode (226.1 mW m-2). Our works have paved a new avenue to the conversion of the natural bacterial precursors into active iron oxide nanoparticles as the anode catalyst of MFCs. The high catalytic activity of the prepared Bio-FeOx endows it great application potentials in the construction of high-performance electrodes.
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Affiliation(s)
- Qinzheng Yang
- State Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250353, Shandong, PR China; Department of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China.
| | - Siqi Yang
- Department of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Guangli Liu
- Department of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Bin Zhou
- Department of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Xiaodi Yu
- Department of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Yanshun Yin
- Department of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Jing Yang
- School of Electronic and Information Engineering (Department of Physics), Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China.
| | - Huazhang Zhao
- Department of Environmental Engineering, Peking University, State Environmental Protection Key Laboratory of All Material Fluxes in River Ecosystems, Beijing 100871, PR China.
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19
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Wang R, Li H, Sun J, Zhang L, Jiao J, Wang Q, Liu S. Nanomaterials Facilitating Microbial Extracellular Electron Transfer at Interfaces. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2004051. [PMID: 33325567 DOI: 10.1002/adma.202004051] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 09/03/2020] [Indexed: 06/12/2023]
Abstract
Electrochemically active bacteria can transport their metabolically generated electrons to anodes, or accept electrons from cathodes to synthesize high-value chemicals and fuels, via a process known as extracellular electron transfer (EET). Harnessing of this microbial EET process has led to the development of microbial bio-electrochemical systems (BESs), which can achieve the interconversion of electrical and chemical energy and enable electricity generation, hydrogen production, electrosynthesis, wastewater treatment, desalination, water and soil remediation, and sensing. Here, the focus is on the current understanding of the microbial EET process occurring at both the bacteria-electrode interface and the biotic interface, as well as some attempts to improve the EET by using various nanomaterials. The behavior of nanomaterials in different EET routes and their influence on the performance of BESs are described. The inherent mechanisms will guide rational design of EET-related materials and lead to a better understanding of EET mechanisms.
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Affiliation(s)
- Ruiwen Wang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Huidong Li
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Jinzhi Sun
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Lu Zhang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Jia Jiao
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Qingqing Wang
- School of Chemistry and Chemical Engineering, Micro- and Nanotechnology Research Center, Harbin Institute of Technology, Harbin, 150090, China
| | - Shaoqin Liu
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
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20
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Sanusi IA, Suinyuy TN, Kana GEB. Impact of nanoparticle inclusion on bioethanol production process kinetic and inhibitor profile. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2021; 29:e00585. [PMID: 33511040 PMCID: PMC7817428 DOI: 10.1016/j.btre.2021.e00585] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2020] [Revised: 12/08/2020] [Accepted: 12/31/2020] [Indexed: 01/06/2023]
Abstract
NiO nanoparticle (NP) inclusion enhanced bioethanol production up to 59.96 %. Band energy gap impact NP catalytic performance in bioethanol production. NiO nanoparticle biocatalyst improved bioethanol productivity by 145 %. Modified Gompertz model was used to describe ethanol production with NP inclusion. Metallic NiO nanoparticles significantly reduced acetic acid concentration by 110 %.
This study examines the effects of nanoparticle inclusion in instantaneous saccharification and fermentation (NIISF) of waste potato peels. The effect of nanoparticle inclusion on the fermentation process was investigated at different stages which were: pre-treatment, liquefaction, saccharification and fermentation. Inclusion of NiO NPs at the pre-treatment stage gave a 1.60-fold increase and 2.10-fold reduction in bioethanol and acetic acid concentration respectively. Kinetic data on the bioethanol production fit the modified Gompertz model (R 2 > 0.98). The lowest production lag time (t L) of 1.56 h, and highest potential bioethanol concentration (P m) of 32 g/L were achieved with NiO NPs inclusion at different process stages; the liquefaction stage and the pre-treatment phase, respectively. Elevated bioethanol yield, coupled with substantial reduction in process inhibitors in the NIISF processes, demonstrated the significance of point of nanobiocatalysts inclusion for the scale-up development of bioethanol production from potato peels.
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Key Words
- ATP, Adenosine triphosphate
- Band energy gap
- Bioethanol
- EDS, Energy dispersive spectrophotometric
- EDX, Energy-dispersive X-ray spectroscopy
- GC–MS, Gas chromatography-Mass spectrometry
- HMF, 5-Hydroxymethyl Furfural
- ISF, Instant saccharification and fermentation
- Inhibitor profile
- NPs, Nanoparticles
- NSLIS, Nano + SATP + Liquefaction + SS + No Fermentation
- NSLISF, Nano + SATP + liquefaction + ISF
- Nanoparticles
- ORP, Oxidation–reduction potential
- SATP, Soaking assisted thermal pre-treatment
- SEM, Scanning electron microscopy
- SLIS, SATP + Liquefaction + SS + No Fermentation
- SLISF, SATP + Liquefaction + ISF
- SLNISF, SATP + Liquefaction + Nano + ISF
- SNLISF, SATP + Nano + Liquefaction + ISF
- SPA, Surface Plasmon Absorption
- SPR, Surface plasmon resonance
- Saccharomyces cerevisiae
- TEM, Transmission electron microscopy
- UV–vis, Ultraviolent visible
- VICs, Volatile inhibitory compounds
- wt%, Weight percent
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Affiliation(s)
- Isaac A Sanusi
- Discipline of Microbiology, Biotechnology Cluster, University of KwaZulu-Natal, Pietermaritzburg Campus, South Africa
| | - Terence N Suinyuy
- School of Biology and Environmental Sciences, University of Mpumalanga, Mbombela, South Africa
| | - Gueguim E B Kana
- Discipline of Microbiology, Biotechnology Cluster, University of KwaZulu-Natal, Pietermaritzburg Campus, South Africa
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21
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Rengasamy K, Ranaivoarisoa T, Bai W, Bose A. Magnetite nanoparticle anchored graphene cathode enhances microbial electrosynthesis of polyhydroxybutyrate by Rhodopseudomonas palustris TIE-1. NANOTECHNOLOGY 2021; 32:035103. [PMID: 33017807 DOI: 10.1088/1361-6528/abbe58] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Microbial electrosynthesis (MES) is an emerging technology that can convert carbon dioxide (CO2) into value-added organic carbon compounds using electrons supplied from a cathode. However, MES is affected by low product formation due to limited extracellular electron uptake by microbes. Herein, a novel cathode was developed from chemically synthesized magnetite nanoparticles and reduced graphene oxide nanocomposite (rGO-MNPs). This nanocomposite was electrochemically deposited on carbon felt (CF/rGO-MNPs), and the modified material was used as a cathode for MES production. The bioplastic, polyhydroxybutyrate (PHB) produced by Rhodopseudomonas palustris TIE-1 (TIE-1), was measured from reactors with modified and unmodified cathodes. Results demonstrate that the magnetite nanoparticle anchored graphene cathode (CF/rGO-MNPs) exhibited higher PHB production (91.31 ± 0.9 mg l-1). This is ∼4.2 times higher than unmodified carbon felt (CF), and 20 times higher than previously reported using graphite. This modified cathode enhanced electron uptake to -11.7 ± 0.1 μA cm-2, ∼5 times higher than CF cathode (-2.3 ± 0.08 μA cm-2). The faradaic efficiency of the modified cathode was ∼2 times higher than the unmodified cathode. Electrochemical analysis and scanning electron microscopy suggest that rGO-MNPs facilitated electron uptake and improved PHB production by TIE-1. Overall, the nanocomposite (rGO-MNPs) cathode modification enhances MES efficiency.
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Affiliation(s)
- Karthikeyan Rengasamy
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, 63130, United States of America
| | - Tahina Ranaivoarisoa
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, 63130, United States of America
| | - Wei Bai
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, 63130, United States of America
- Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO, United States of America
| | - Arpita Bose
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, 63130, United States of America
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Outer Membrane c-Type Cytochromes OmcA and MtrC Play Distinct Roles in Enhancing the Attachment of Shewanella oneidensis MR-1 Cells to Goethite. Appl Environ Microbiol 2020; 86:AEM.01941-20. [PMID: 32978123 DOI: 10.1128/aem.01941-20] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 09/12/2020] [Indexed: 12/12/2022] Open
Abstract
The outer membrane c-type cytochromes (c-Cyts) OmcA and MtrC in Shewanella are key terminal reductases that bind and transfer electrons directly to iron (hydr)oxides. Although the amounts of OmcA and MtrC at the cell surface and their molecular structures are largely comparable, MtrC is known to play a more important role in dissimilatory iron reduction. To explore the roles of these outer membrane c-Cyts in the interaction of Shewanella oneidensis MR-1 with iron oxides, the processes of attachment of S. oneidensis MR-1 wild type and c-type cytochrome-deficient mutants (the ΔomcA, ΔmtrC, and ΔomcA ΔmtrC mutants) to goethite are compared via quartz crystal microbalance with dissipation monitoring (QCM-D). Strains with OmcA exhibit a rapid initial attachment. The quantitative model for QCM-D responses reveals that MtrC enhances the contact area and contact elasticity of cells with goethite by more than one and two times, respectively. In situ attenuated total reflectance Fourier transform infrared two-dimensional correlation spectroscopic (ATR-FTIR 2D-CoS) analysis shows that MtrC promotes the initial interfacial reaction via an inner-sphere coordination. Atomic force microscopy (AFM) analysis demonstrates that OmcA enhances the attractive force between cells and goethite by about 60%. As a result, OmcA contributes to a higher attractive force with goethite and induces a rapid short-term attachment, while MtrC is more important in the longer-term interaction through an enhanced contact area, which promotes interfacial reactions. These results reveal that c-Cyts OmcA and MtrC adopt different mechanisms for enhancing the attachment of S. oneidensis MR-1 cells to goethite. It improves our understanding of the function of outer membrane c-Cyts and the influence of cell surface macromolecules in cell-mineral interactions.IMPORTANCE Shewanella species are one group of versatile and widespread dissimilatory iron-reducing bacteria, which are capable of respiring insoluble iron minerals via six multiheme c-type cytochromes. Outer membrane c-type cytochromes (c-Cyts) OmcA and MtrC are the terminal reductases in this pathway and have comparable protein structures. In this study, we elucidate the different roles of OmcA and MtrC in the interaction of S. oneidensis MR-1 with goethite at the whole-cell level. OmcA confers enhanced affinity toward goethite and results in rapid attachment. Meanwhile, MtrC significantly increases the contact area of bacterial cells with goethite and promotes the interfacial reaction, which may explain its central role in extracellular electron transfer. This study provides novel insights into the role of bacterial surface macromolecules in the interfacial interaction of bacteria with minerals, which is critical to the development of a comprehensive understanding of cell-mineral interactions.
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Kimkes TEP, Heinemann M. How bacteria recognise and respond to surface contact. FEMS Microbiol Rev 2020; 44:106-122. [PMID: 31769807 PMCID: PMC7053574 DOI: 10.1093/femsre/fuz029] [Citation(s) in RCA: 80] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Accepted: 11/23/2019] [Indexed: 12/27/2022] Open
Abstract
Bacterial biofilms can cause medical problems and issues in technical systems. While a large body of knowledge exists on the phenotypes of planktonic and of sessile cells in mature biofilms, our understanding of what happens when bacteria change from the planktonic to the sessile state is still very incomplete. Fundamental questions are unanswered: for instance, how do bacteria sense that they are in contact with a surface, and what are the very initial cellular responses to surface contact. Here, we review the current knowledge on the signals that bacteria could perceive once they attach to a surface, the signal transduction systems that could be involved in sensing the surface contact and the cellular responses that are triggered as a consequence to surface contact ultimately leading to biofilm formation. Finally, as the main obstacle in investigating the initial responses to surface contact has been the difficulty to experimentally study the dynamic response of single cells upon surface attachment, we also review recent experimental approaches that could be employed to study bacterial surface sensing, which ultimately could lead to an improved understanding of how biofilm formation could be prevented.
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Affiliation(s)
- Tom E P Kimkes
- Molecular Systems Biology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands
| | - Matthias Heinemann
- Molecular Systems Biology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands
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Li S, Niu Y, Chen H, He P. Complete genome sequence of an Arctic Ocean bacterium Shewanella sp. Arc9-LZ with capacity of synthesizing silver nanoparticles in darkness. Mar Genomics 2020; 56:100808. [PMID: 32778401 DOI: 10.1016/j.margen.2020.100808] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 07/15/2020] [Accepted: 07/22/2020] [Indexed: 11/15/2022]
Abstract
Shewanella sp. Arc9-LZ is a bacterium capable of synthesizing silver nanoparticles in darkness. It was isolated from the marine sediment from the Arctic Ocean (158°01'12"W; 84°28'38"N) collected during the 9th Chinese National Arctic Expedition in 2018. Here, we describe the complete genome of Shewanella sp. Arc9-LZ. The complete genome of Shewanella sp. Arc9-LZ is composed of a circular chromosome of 4,911,031 bp with G + C content of 41.61 mol%. The genome encodes 4040 protein-coding genes (CDSs), 104 tRNAs, and 35 rRNAs. The rRNAs contain 14 copies of 5S rRNA gene, 11 copies of 16S rRNA gene, and 10 copies of 23S rRNA gene. Based on the KEGG, COG, NR, Swiss-Prot, TCDB, and CAZy analysis, a total of 64 genes belonging to 9 kinds are related to the AgNPs synthesis. These genes are involeved in the synthesis of riboflavin, b-type cytochrome, c-type cytochrome, coenzyme Q, NADPH dehydrogenase, cytochrome c reductase, cytochrome c oxidase, nitroreductase, and nitrate reductase.
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Affiliation(s)
- Shuang Li
- Key Laboratory of Science and Technology for Marine Ecology and Environment, First Institute of Oceanography, Ministry of Natural Resources, 6 Xianxialing Road, Qingdao 266061, China; Key Laboratory of Natural Products of Qingdao, Qingdao 266061, China
| | - Yuanyuan Niu
- Key Laboratory of Science and Technology for Marine Ecology and Environment, First Institute of Oceanography, Ministry of Natural Resources, 6 Xianxialing Road, Qingdao 266061, China; Key Laboratory of Natural Products of Qingdao, Qingdao 266061, China
| | - Hao Chen
- Key Laboratory of Science and Technology for Marine Ecology and Environment, First Institute of Oceanography, Ministry of Natural Resources, 6 Xianxialing Road, Qingdao 266061, China; Key Laboratory of Natural Products of Qingdao, Qingdao 266061, China
| | - Peiqing He
- Key Laboratory of Science and Technology for Marine Ecology and Environment, First Institute of Oceanography, Ministry of Natural Resources, 6 Xianxialing Road, Qingdao 266061, China; Key Laboratory of Natural Products of Qingdao, Qingdao 266061, China.
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Sanusi IA, Suinyuy TN, Lateef A, Kana GE. Effect of nickel oxide nanoparticles on bioethanol production: Process optimization, kinetic and metabolic studies. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.01.029] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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26
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Wang Y, Coyne KJ. Immobilization of algicidal bacterium Shewanella sp. IRI-160 and its application to control harmful dinoflagellates. HARMFUL ALGAE 2020; 94:101798. [PMID: 32414500 DOI: 10.1016/j.hal.2020.101798] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 03/11/2020] [Accepted: 03/17/2020] [Indexed: 06/11/2023]
Abstract
Shewanella sp. IRI-160 is an algicidal bacterium isolated from Delaware Inland Bays. It secretes water-soluble compounds that inhibit the growth of dinoflagellates. Previous research indicated that this bacterium does not have a negative impact on other algal species. In this research, Shewanella sp. IRI-160 was immobilized to different porous matrices, including agarose, alginate hydrogel, cellulosic sponge, and polyester foam. The retention of Shewanella sp. IRI-160 on or within these matrices was examined at 4 and 25 °C for 12 days. Results indicated that alginate was superior in terms of cell retention, with >99% of Shewanella cells retained in the matrix after 12 days. Shewanella sp. IRI-160 cells were then immobilized within alginate beads to evaluate algicidal effects on harmful dinoflagellates Karlodinium veneficum and Prorocentrum minimum at bacterial concentrations of 106 to 108 cells mL-1. The effects on dinoflagellates were compared to non-harmful cryptophyte Rhodomonas sp., as well as the effects of free-living bacteria on these species. Results indicated that immobilized Shewanella sp. IRI-160 in alginate beads were as effective as the free-living bacteria to control the growth of K. veneficum and P. minimum, while no negative impacts of immobilized Shewanella sp. IRI-160 on the non-harmful control species Rhodomonas sp. were observed. Overall, this study suggests that immobilized Shewanella sp. IRI-160 may be used as an environmentally friendly approach to prevent or mitigate the blooms of harmful dinoflagellates and provides insight and directions for future studies.
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Affiliation(s)
- Yanfei Wang
- University of Delaware, 1044 College Drive, Lewes, DE 19958, USA
| | - Kathryn J Coyne
- University of Delaware, 1044 College Drive, Lewes, DE 19958, USA.
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Ungai-Salánki R, Peter B, Gerecsei T, Orgovan N, Horvath R, Szabó B. A practical review on the measurement tools for cellular adhesion force. Adv Colloid Interface Sci 2019; 269:309-333. [PMID: 31128462 DOI: 10.1016/j.cis.2019.05.005] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 05/05/2019] [Accepted: 05/06/2019] [Indexed: 01/03/2023]
Abstract
Cell-cell and cell-matrix adhesions are fundamental in all multicellular organisms. They play a key role in cellular growth, differentiation, pattern formation and migration. Cell-cell adhesion is substantial in the immune response, pathogen-host interactions, and tumor development. The success of tissue engineering and stem cell implantations strongly depends on the fine control of live cell adhesion on the surface of natural or biomimetic scaffolds. Therefore, the quantitative and precise measurement of the adhesion strength of living cells is critical, not only in basic research but in modern technologies, too. Several techniques have been developed or are under development to quantify cell adhesion. All of them have their pros and cons, which has to be carefully considered before the experiments and interpretation of the recorded data. Current review provides a guide to choose the appropriate technique to answer a specific biological question or to complete a biomedical test by measuring cell adhesion.
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Tokunou Y, Okamoto A. Geometrical Changes in the Hemes of Bacterial Surface c-Type Cytochromes Reveal Flexibility in Their Binding Affinity with Minerals. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:7529-7537. [PMID: 30351954 DOI: 10.1021/acs.langmuir.8b02977] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Microbial extracellular electron transport occurs via the physical and electrical association of outer-membrane c-type cytochromes (OM c-Cyts) with extracellular solid surfaces. However, studies investigating the characteristics of cytochrome binding with solid materials have been limited to the use of purified units of OM c-Cyts dissolved in solution, rather than OM c-Cyts in intact cells, because of the lack of a methodology that specifically allows for the monitoring of OM c-Cyts in whole-cells. Here, we utilized circular dichroism (CD) spectroscopy to examine the molecular mechanisms and binding characteristics of the interaction between MtrC, a unit of OM c-Cyts, in whole Shewanella oneidensis MR-1 cells and hematite nanoparticles. The addition of hematite nanoparticles significantly decreased the intensity of the Soret CD peaks, indicating geometrical changes in the hemes in MtrC associated with their physical contact with hematite. The binding affinity of MtrC estimated using CD spectra changed predominantly depending upon the redox state of MtrC and the concentration of the hematite nanoparticles. In contrast, purified MtrC demonstrated a constant binding affinity following a Langmuir isotherm, with a standard Gibbs free energy of -43 kJ mol-1, suggesting that the flexibility in the binding affinity of MtrC with hematite was specific in membrane-bound protein complex conditions. Overall, these findings suggest that the binding affinity as well as the heme geometry of OM c-Cyts are flexibly modulated in the membrane complex associated with microbe-mineral interactions.
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Affiliation(s)
- Yoshihide Tokunou
- Department of Applied Chemistry , The University of Tokyo , 7-3-1 Hongo , Bunkyo-ku, Tokyo 113-8656 , Japan
- International Center for Materials Nanoarchitectonics , National Institute for Materials Science , 1-1 Namiki , Tsukuba , Ibaraki 305-0044 , Japan
| | - Akihiro Okamoto
- International Center for Materials Nanoarchitectonics , National Institute for Materials Science , 1-1 Namiki , Tsukuba , Ibaraki 305-0044 , Japan
- Center for Functional Sensor & Actuator , National Institute for Materials Science , 1-1 Namiki , Tsukuba , Ibaraki 305-0044 , Japan
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29
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Zhang Q, Amor K, Galer SJG, Thompson I, Porcelli D. Using stable isotope fractionation factors to identify Cr(VI) reduction pathways: Metal-mineral-microbe interactions. WATER RESEARCH 2019; 151:98-109. [PMID: 30594094 DOI: 10.1016/j.watres.2018.11.088] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Revised: 11/26/2018] [Accepted: 11/30/2018] [Indexed: 06/09/2023]
Abstract
Microbes interact with metals and minerals in the environment altering their physical and chemical states, whilst in turn metals and minerals impact on microbial growth, activity and survival. The interactions between bacteria and dissolved chromium in the presence of iron minerals, and their impact on Cr isotope variations, were investigated. Cr(VI) reduction experiments were conducted with two bacteria, Pseudomonas fluorescens LB 300 and Shewanella oneidensis MR-1, in the presence of two iron oxide minerals, goethite and hematite. Both minerals were found to inhibit the rates of Cr(VI) reduction by Pseudomonas, but accelerated those of Shewanella. The Cr isotopic fractionation factors generated by Shewanella were independent of the presence of the minerals (ε = -2.3‰). For Pseudomonas, the ε value was the same in both the presence and absence of goethite (-3.3‰); although, it was much higher (ε = -4.3‰) in the presence of hematite. The presence of aqueous Fe(III) in solution had no detectable impact on either bacterial Cr reduction rates nor isotopic fractionation factors. The presence of aqueous Fe(II) induced rapid abiotic reduction of Cr(VI). The different effects that the presence of Fe minerals had on the Cr fractionation factors and reduction rates of the different bacterial species may be attributed to the way each bacteria attached to the minerals and their different reduction pathways. SEM images confirmed that Pseudomonas cells were much more tightly packed on the mineral surfaces than were Shewanella. The images also confirmed that Shewanella oneidensis MR-1 produced nanowires. The results suggest that the dominant Cr(VI) reduction pathway for Pseudomonas fluorescens LB 300 may have been through membrane-bound enzymes, whilst for Shewanella oneidensis MR-1 it was probably via extracellular electron transfer. Since different minerals impact differentially on bacterial Cr(VI) reduction and isotope fractionation, variations of mineralogies and the associated changes of bacterial communities should be taken into consideration when using Cr isotopes to quantify Cr redox behaviour in the environment.
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Affiliation(s)
- Qiong Zhang
- Department of Earth Sciences, University of Oxford, Oxford, United Kingdom.
| | - Ken Amor
- Department of Earth Sciences, University of Oxford, Oxford, United Kingdom
| | - Stephen J G Galer
- Max Planck Institute for Chemistry, Climate Geochemistry Department, 55128, Mainz, Germany
| | - Ian Thompson
- Department of Engineering Science, University of Oxford, Oxford, United Kingdom
| | - Don Porcelli
- Department of Earth Sciences, University of Oxford, Oxford, United Kingdom
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30
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Nanoscale Observations Support the Importance of Chemical Processes in Rock Decay and Rock Coating Development in Cold Climates. GEOSCIENCES 2019. [DOI: 10.3390/geosciences9030121] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Conventional scholarship long held that rock fracturing from physical processes dominates over chemical rock decay processes in cold climates. The paradigm of the supremacy of cold-climate shattering was questioned by Rapp’s discovery (1960) that the flux of dissolved solids leaving a Kärkevagge, Swedish Lapland, watershed exceeded physical denudation processes. Many others since have gone on to document the importance of chemical rock decay in all cold climate landscapes, using a wide variety of analytical approaches. This burgeoning scholarship, however, has only generated a few nanoscale studies. Thus, this paper’s purpose rests in an exploration of the potential for nanoscale research to better understand chemical processes operating on rock surfaces in cold climates. Samples from several Antarctica locations, Greenland, the Tibetan Plateau, and high altitude tropical and mid-latitude mountains all illustrate ubiquitous evidence of chemical decay at the nanoscale, even though the surficial appearance of each landscape is dominated by “bare fresh rock.” With the growing abundance of focused ion beam (FIB) instruments facilitating sample preparation, the hope is that that future rock decay researchers studying cold climates will add nanoscale microscopy to their bag of tools.
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31
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Zhu H, Dong Z, Huang Q, Song TS, Xie J. Fe3O4/granular activated carbon as an efficient three-dimensional electrode to enhance the microbial electrosynthesis of acetate from CO2. RSC Adv 2019; 9:34095-34101. [PMID: 35529973 PMCID: PMC9073640 DOI: 10.1039/c9ra06255f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Accepted: 10/05/2019] [Indexed: 11/21/2022] Open
Abstract
Microbial electrosynthesis (MES) allows the transformation of CO2 into value-added products by coupling with renewable energy.
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Affiliation(s)
- Hao Zhu
- State Key Laboratory of Materials-Oriented Chemical Engineering
- Nanjing Tech University
- Nanjing 211816
- PR China
- College of Life Science and Pharmaceutical Engineering
| | - Zhiwei Dong
- State Key Laboratory of Materials-Oriented Chemical Engineering
- Nanjing Tech University
- Nanjing 211816
- PR China
- College of Life Science and Pharmaceutical Engineering
| | - Qiong Huang
- Jiangsu Collaborative Innovation Center of Atmospheric Environment and Equipment Technology
- Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control (AEMPC)
- Nanjing University of Information Science & Technology
- Nanjing 210044
- PR China
| | - Tian-shun Song
- State Key Laboratory of Materials-Oriented Chemical Engineering
- Nanjing Tech University
- Nanjing 211816
- PR China
- College of Life Science and Pharmaceutical Engineering
| | - Jingjing Xie
- State Key Laboratory of Materials-Oriented Chemical Engineering
- Nanjing Tech University
- Nanjing 211816
- PR China
- College of Life Science and Pharmaceutical Engineering
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32
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Abstract
Antimicrobial peptides (AMPs) are one of the most promising alternatives to conventional antibiotics. Atomic force microscopy (AFM), as imaging and force spectroscopy tool, has been applied to study their mechanism of action and development. Here, we describe different methods to be applied in the study of AMP effects on bacteria, either by imaging or by force spectroscopy studies, essential to underlie their action and to identify possibly outcomes of the same.
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Affiliation(s)
- Marco M Domingues
- Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.
| | - Mário R Felício
- Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal
| | - Sónia Gonçalves
- Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.
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Neveu M, Hays LE, Voytek MA, New MH, Schulte MD. The Ladder of Life Detection. ASTROBIOLOGY 2018; 18:1375-1402. [PMID: 29862836 PMCID: PMC6211372 DOI: 10.1089/ast.2017.1773] [Citation(s) in RCA: 89] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Accepted: 03/23/2018] [Indexed: 05/04/2023]
Abstract
We describe the history and features of the Ladder of Life Detection, a tool intended to guide the design of investigations to detect microbial life within the practical constraints of robotic space missions. To build the Ladder, we have drawn from lessons learned from previous attempts at detecting life and derived criteria for a measurement (or suite of measurements) to constitute convincing evidence for indigenous life. We summarize features of life as we know it, how specific they are to life, and how they can be measured, and sort these features in a general sense based on their likelihood of indicating life. Because indigenous life is the hypothesis of last resort in interpreting life-detection measurements, we propose a small but expandable set of decision rules determining whether the abiotic hypothesis is disproved. In light of these rules, we evaluate past and upcoming attempts at life detection. The Ladder of Life Detection is not intended to endorse specific biosignatures or instruments for life-detection measurements, and is by no means a definitive, final product. It is intended as a starting point to stimulate discussion, debate, and further research on the characteristics of life, what constitutes a biosignature, and the means to measure them.
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Affiliation(s)
- Marc Neveu
- NASA Postdoctoral Management Program Fellow, Universities Space Research Association, Columbia, Maryland
- NASA Headquarters, Washington, DC
| | - Lindsay E. Hays
- NASA Headquarters, Washington, DC
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
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Sharma M, Menon P, Voordouw J, Shen Y, Voordouw G. Effect of long term application of tetrakis(hydroxymethyl)phosphonium sulfate (THPS) in a light oil-producing oilfield. BIOFOULING 2018; 34:605-617. [PMID: 30149740 DOI: 10.1080/08927014.2018.1476500] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 05/09/2018] [Indexed: 06/08/2023]
Abstract
Samples of (I) produced waters, (II) central processing facility (CPF) waters and (III) pipeline solids were collected from a light oil-producing field. The biocide, tetrakis(hydroxymethyl)phosphonium sulfate (THPS) was routinely used in the CPF. Samples monitoring indicated that THPS was effective in microbial control but also increased concentrations of sulfate and phosphate in transitioning from Type I to Type II waters. Type II waters had high concentrations (up to 60 mM) of acetate but low most probable numbers (MPNs) of acid-producing and sulfate-reducing bacteria, indicating the presence of active biocide, as high MPNs were found in Type I waters. Solids had high phosphate and high MPNs, indicating that THPS was inactive. Solids had oil and an anaerobic community dominated by Acetobacterium, which may contribute to conversion of oil to acetate. The presence of THPS prevented the use of this acetate in Type II waters, where it accumulated to unusually high concentrations.
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Affiliation(s)
- Mohita Sharma
- a Petroleum Microbiology Research Group , Department of Biological Sciences , University of Calgary , Calgary , Canada
| | - Priyesh Menon
- a Petroleum Microbiology Research Group , Department of Biological Sciences , University of Calgary , Calgary , Canada
| | - Johanna Voordouw
- a Petroleum Microbiology Research Group , Department of Biological Sciences , University of Calgary , Calgary , Canada
| | - Yin Shen
- a Petroleum Microbiology Research Group , Department of Biological Sciences , University of Calgary , Calgary , Canada
| | - Gerrit Voordouw
- a Petroleum Microbiology Research Group , Department of Biological Sciences , University of Calgary , Calgary , Canada
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35
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Formosa-Dague C, Castelain M, Martin-Yken H, Dunker K, Dague E, Sletmoen M. The Role of Glycans in Bacterial Adhesion to Mucosal Surfaces: How Can Single-Molecule Techniques Advance Our Understanding? Microorganisms 2018; 6:E39. [PMID: 29734645 PMCID: PMC6027152 DOI: 10.3390/microorganisms6020039] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 04/24/2018] [Accepted: 04/26/2018] [Indexed: 12/14/2022] Open
Abstract
Bacterial adhesion is currently the subject of increased interest from the research community, leading to fast progress in our understanding of this complex phenomenon. Resent research within this field has documented the important roles played by glycans for bacterial surface adhesion, either through interaction with lectins or with other glycans. In parallel with this increased interest for and understanding of bacterial adhesion, there has been a growth in the sophistication and use of sensitive force probes for single-molecule and single cell studies. In this review, we highlight how the sensitive force probes atomic force microscopy (AFM) and optical tweezers (OT) have contributed to clarifying the mechanisms underlying bacterial adhesion to glycosylated surfaces in general and mucosal surfaces in particular. We also describe research areas where these techniques have not yet been applied, but where their capabilities appear appropriate to advance our understanding.
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Affiliation(s)
| | - Mickaël Castelain
- LISBP, Université de Toulouse, CNRS, INRA, INSA, 31400 Toulouse, France.
| | - Hélène Martin-Yken
- LISBP, Université de Toulouse, CNRS, INRA, INSA, 31400 Toulouse, France.
| | - Karen Dunker
- Department of Biotechnology and Food Science, NTNU the Norwegian University of Science and Technology, NO-7491 Trondheim, Norway.
| | - Etienne Dague
- LAAS-CNRS, Université de Toulouse, CNRS, 31400 Toulouse, France.
| | - Marit Sletmoen
- Department of Biotechnology and Food Science, NTNU the Norwegian University of Science and Technology, NO-7491 Trondheim, Norway.
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36
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Brewer TE, Fierer N. Tales from the tomb: the microbial ecology of exposed rock surfaces. Environ Microbiol 2017; 20:958-970. [PMID: 29235707 DOI: 10.1111/1462-2920.14024] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2017] [Revised: 10/25/2017] [Accepted: 12/06/2017] [Indexed: 11/29/2022]
Abstract
Although a broad diversity of eukaryotic and bacterial taxa reside on rock surfaces where they can influence the weathering of rocks and minerals, these communities and their contributions to mineral weathering remain poorly resolved. To build a more comprehensive understanding of the diversity, ecology and potential functional attributes of microbial communities living on rock, we sampled 149 tombstones across three continents and analysed their bacterial and eukaryotic communities via marker gene and shotgun metagenomic sequencing. We found that geographic location and climate were important factors structuring the composition of these communities. Moreover, the tombstone-associated microbial communities varied as a function of rock type, with granite and limestone tombstones from the same cemeteries harbouring taxonomically distinct microbial communities. The granite and limestone-associated communities also had distinct functional attributes, with granite-associated bacteria having more genes linked to acid tolerance and chemotaxis, while bacteria on limestone were more likely to be lichen associated and have genes involved in photosynthesis and radiation resistance. Together these results indicate that rock-dwelling microbes exhibit adaptations to survive the stresses of the rock surface, differ based on location, climate and rock type, and seem pre-disposed to different ecological strategies (symbiotic versus free-living lifestyles) depending on the rock type.
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Affiliation(s)
- Tess E Brewer
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA.,Departments of Molecular, Cellular, and Developmental Biology
| | - Noah Fierer
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA.,Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA
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Bian L, Li HL, Li YJ, Nie JN, Dong FQ, Dong HL, Song MX, Wang LS, Zhou TL, Zhang XY, Li XX, Xie L. Enhanced Photovoltage Response of Hematite-X-Ferrite Interfaces (X = Cr, Mn, Co, or Ni). NANOSCALE RESEARCH LETTERS 2017; 12:136. [PMID: 28235371 PMCID: PMC5319936 DOI: 10.1186/s11671-017-1885-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2016] [Accepted: 01/31/2017] [Indexed: 06/06/2023]
Abstract
High-fluorescent p-X-ferrites (XFe2O4; XFO; X = Fe, Cr, Mn, Co, or Ni) embedded in n-hematite (Fe2O3) surfaces were successfully fabricated via a facile bio-approach using Shewanella oneidensis MR-1. The results revealed that the X ions with high/low work functions modify the unpaired spin Fe2+-O2- orbitals in the XFe2O4 lattices to become localized paired spin orbitals at the bottom of conduction band, separating the photovoltage response signals (73.36~455.16/-72.63~-32.43 meV). These (Fe2O3)-O-O-(XFe2O4) interfacial coupling behaviors at two fluorescence emission peaks (785/795 nm) are explained via calculating electron-hole effective masses (Fe2O3-FeFe2O4 17.23 × 10-31 kg; Fe2O3-CoFe2O4 3.93 × 10-31 kg; Fe2O3-NiFe2O4 11.59 × 10-31 kg; Fe2O3-CrFe2O4 -4.2 × 10-31 kg; Fe2O3-MnFe2O4 -11.73 × 10-31 kg). Such a system could open up a new idea in the design of photovoltage response biosensors.
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Affiliation(s)
- Liang Bian
- Institute of Gem and Material Technology, Hebei GEO University, Shijiazhuang, 050000, Hebei, China.
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang, 621010, Sichuan, China.
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi, 830011, Xinjiang, China.
| | - Hai-Long Li
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang, 621010, Sichuan, China.
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi, 830011, Xinjiang, China.
| | - Yu-Jin Li
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi, 830011, Xinjiang, China
| | - Jia-Nan Nie
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi, 830011, Xinjiang, China
| | - Fa-Qin Dong
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang, 621010, Sichuan, China
| | - Hai-Liang Dong
- Department of Geology and Environmental Earth Science, Miami University, Oxford, 45056, OH, USA
| | - Mian-Xin Song
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang, 621010, Sichuan, China
| | - Li-Sheng Wang
- Institute of Gem and Material Technology, Hebei GEO University, Shijiazhuang, 050000, Hebei, China
| | - Tian-Liang Zhou
- Institute of Gem and Material Technology, Hebei GEO University, Shijiazhuang, 050000, Hebei, China
| | - Xiao-Yan Zhang
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang, 621010, Sichuan, China
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi, 830011, Xinjiang, China
| | - Xin-Xi Li
- Institute of Nuclear Physics and Chemistry, CAEP, Mianyang, 621900, Sichuan, China
| | - Lei Xie
- Institute of Nuclear Physics and Chemistry, CAEP, Mianyang, 621900, Sichuan, China
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Atomic Force Microscopy: A Promising Tool for Deciphering the Pathogenic Mechanisms of Fungi in Cystic Fibrosis. Mycopathologia 2017; 183:291-310. [PMID: 29128932 DOI: 10.1007/s11046-017-0201-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 09/14/2017] [Indexed: 10/18/2022]
Abstract
During the past decades, atomic force microscopy (AFM) has emerged as a powerful tool in microbiology. Although most of the works concerned bacteria, AFM also permitted major breakthroughs in the understanding of physiology and pathogenic mechanisms of some fungal species associated with cystic fibrosis. Complementary to electron microscopies, AFM offers unprecedented insights to visualize the cell wall architecture and components through three-dimensional imaging with nanometer resolution and to follow their dynamic changes during cell growth and division or following the exposure to drugs and chemicals. Besides imaging, force spectroscopy with piconewton sensitivity provides a direct means to decipher the forces governing cell-cell and cell-substrate interactions, but also to quantify specific and non-specific interactions between cell surface components at the single-molecule level. This nanotool explores new ways for a better understanding of the structures and functions of the cell surface components and therefore may be useful to elucidate the role of these components in the host-pathogen interactions as well as in the complex interplay between bacteria and fungi in the lung microbiome.
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Li Q, Becker T, Sand W. Quantification of cell-substratum interactions by atomic force microscopy. Colloids Surf B Biointerfaces 2017; 159:639-643. [PMID: 28865360 DOI: 10.1016/j.colsurfb.2017.08.023] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2017] [Revised: 08/08/2017] [Accepted: 08/14/2017] [Indexed: 11/15/2022]
Abstract
Microorganisms adhere to surfaces and, subsequently, form biofilms. This process is of major interest in biotechnology, environmental sciences and medicine. It is crucial to understand the mechanisms of interactions between substratum and cells or biofilms. By combining force mapping-based atomic force microscopy (AFM) with pyrite-modified cantilevers we quantified the adhesion forces between undenatured planktonic or biofilm cells of Sulfobacillus thermosulfidooxidans and the substratum pyrite with values of 2.6±0.3nN and 77.3±7.1pN, respectively. This was achieved under natural conditions without any artefact resulting from the use of denaturing chemicals such as glutaraldehyde. This new technique is unique for quantifying the real interaction forces between cells or biofilms and their substrata.
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Affiliation(s)
- Qian Li
- Biofilm Centre, Aquatische Biotechnologie, Universität Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany
| | - Thomas Becker
- Department of Chemistry/Nanochemistry Research Institute, Curtin University, Bentley, WA 6845, Australia
| | - Wolfgang Sand
- Biofilm Centre, Aquatische Biotechnologie, Universität Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany; College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China.
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40
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Bian L, Li YJ, Li J, Nie JN, Dong FQ, Song MX, Wang LS, Dong HL, Li HL, Nie XQ, Zhang XY, Li XX, Xie L. Photovoltage response of (XZn)Fe 2O 4-BiFeO 3 (X=Mg, Mn or Ni) interfaces for highly selective Cr 3+, Cd 2+, Co 2+ and Pb 2+ ions detection. JOURNAL OF HAZARDOUS MATERIALS 2017; 336:174-187. [PMID: 28494305 DOI: 10.1016/j.jhazmat.2017.04.071] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Revised: 04/13/2017] [Accepted: 04/28/2017] [Indexed: 06/07/2023]
Abstract
High-photostability fluorescent (XZn)Fe2O4 (X=Mg, Mn or Ni) embedded in BiFeO3 spinel-perovskite nanocomposites were successfully fabricated via a novel bio-induced phase transfer method using shewanella oneidensis MR-1. These nanocomposites have the near-infrared fluorescence response (XZn or Fe)-O-O-(Bi) interfaces (785/832nm), and the (XZn)Fe2O4/BiFeO3 lattices with high/low potentials (572.15-808.77meV/206.43-548.1meV). Our results suggest that heavy metal ion (Cr3+, Cd2+, Co2+ and Pb2+) d↓ orbitals hybridize with the paired-spin X-Zn-Fe d↓-d↓-d↑↓ orbitals to decrease the average polarization angles (-29.78 to 44.71°), qualitatively enhancing the photovoltage response selective potentials (39.57-487.84meV). The fluorescent kinetic analysis shows that both first-order and second-order equilibrium adsorption isotherms are in line and meet the Langmuir and Freundlich modes. Highly selective fluorescence detection of Co2+, Cr3+ and Cd2+ can be achieved using Fe3O4-BiFeO3 (Langmuir mode), (MgZn)Fe2O4-BiFeO3 and (MnZn)Fe2O4-BiFeO3 (Freundlich mode), respectively. Where the corresponding max adsorption capacities (qmax) are 1.5-1.94, 35.65 and 43.7 multiple, respectively, being more competitive than that of other heavy metal ions. The present bio-synthesized method might be relevant for high-photostability fluorescent spinel-perovskite nanocomposites, for design of heavy metal ion sensors.
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Affiliation(s)
- Liang Bian
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang 621010, Sichuan, China; Institute of Gem and Material Technology, Hebei GEO University, Shijiazhuang 050000, Hebei, China; Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi 830011, Xinjiang, China.
| | - Yu-Jin Li
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi 830011, Xinjiang, China
| | - Jing Li
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi 830011, Xinjiang, China
| | - Jia-Nan Nie
- Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi 830011, Xinjiang, China
| | - Fa-Qin Dong
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang 621010, Sichuan, China
| | - Mian-Xin Song
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang 621010, Sichuan, China
| | - Li-Sheng Wang
- Institute of Gem and Material Technology, Hebei GEO University, Shijiazhuang 050000, Hebei, China
| | - Hai-Liang Dong
- Department of Geology and Environmental Earth Science, Miami University, Oxford 45056, USA
| | - Hai-Long Li
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang 621010, Sichuan, China; Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi 830011, Xinjiang, China
| | - Xiao-Qin Nie
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang 621010, Sichuan, China
| | - Xiao-Yan Zhang
- Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, South West University of Science and Technology, Mianyang 621010, Sichuan, China; Key Laboratory of Functional Materials and Devices under Special Environments, Chinese Academy of Sciences, Urumqi 830011, Xinjiang, China
| | - Xin-Xi Li
- Institute of Nuclear Physics and Chemistry, CAEP, Mianyang 621900, Sichuan, China
| | - Lei Xie
- Institute of Nuclear Physics and Chemistry, CAEP, Mianyang 621900, Sichuan, China
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Mulansky S, Saballus M, Friedrichs J, Bley T, Boschke E. A novel protocol to prepare cell probes for the quantification of microbial adhesion and biofilm initiation on structured bioinspired surfaces using AFM for single-cell force spectroscopy: Dedicated to Prof. em. Dr. Dr. H.C. Karl Schügerl on the occasion of his 90th birthday. Eng Life Sci 2017; 17:833-840. [PMID: 32624830 DOI: 10.1002/elsc.201700059] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2017] [Revised: 05/03/2017] [Accepted: 05/08/2017] [Indexed: 01/28/2023] Open
Abstract
We present a novel protocol that uses single-cell force spectroscopy to characterize the bacteria-to-surface interactions involved in early steps of biofilm formation. Bacteria are immobilized as a monolayer by electrostatic interactions on a polyethylenimine-coated silica bead, and the Escherichia coli-bead complex is then glued on a tipless cantilever. We validated our new protocol by comparing to earlier published methods using single bacteria, but in contrast to these, which carry out bacterial attachment to the bead after fixation to the cantilever, our protocol results in more reliable production of usable cell probes. Measurements of interactions of E. coli with bio-inspired surfaces by single-cell force spectroscopy yielded comparable detachment forces to those found with the previous methods.
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Affiliation(s)
- Susan Mulansky
- Institute of Natural Materials Technology Technische Universität Dresden Dresden Germany
| | - Martin Saballus
- Institute of Natural Materials Technology Technische Universität Dresden Dresden Germany
| | - Jens Friedrichs
- Institute of Biofunctional Polymer Materials Leibniz Institute of Polymer Research Dresden (IPF) Germany
| | - Thomas Bley
- Institute of Natural Materials Technology Technische Universität Dresden Dresden Germany
| | - Elke Boschke
- Institute of Natural Materials Technology Technische Universität Dresden Dresden Germany
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Li Q, Sand W. Mechanical and chemical studies on EPS from Sulfobacillus thermosulfidooxidans : from planktonic to biofilm cells. Colloids Surf B Biointerfaces 2017; 153:34-40. [DOI: 10.1016/j.colsurfb.2017.02.009] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2016] [Revised: 01/28/2017] [Accepted: 02/08/2017] [Indexed: 11/26/2022]
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Use of Bacteria To Stabilize Archaeological Iron. Appl Environ Microbiol 2017; 83:AEM.03478-16. [PMID: 28283522 DOI: 10.1128/aem.03478-16] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Accepted: 02/15/2017] [Indexed: 11/20/2022] Open
Abstract
Iron artifacts are common among the findings of archaeological excavations. The corrosion layer formed on these objects requires stabilization after their recovery, without which the destruction of the item due to physicochemical damage is likely. Current technologies for stabilizing the corrosion layer are lengthy and generate hazardous waste products. Therefore, there is a pressing need for an alternative method for stabilizing the corrosion layer on iron objects. The aim of this study was to evaluate an alternative conservation-restoration method using bacteria. For this, anaerobic iron reduction leading to the formation of stable iron minerals in the presence of chlorine was investigated for two strains of Desulfitobacterium hafniense (strains TCE1 and LBE). Iron reduction was observed for soluble Fe(III) phases as well as for akaganeite, the most troublesome iron compound in the corrosion layer of archaeological iron objects. In terms of biogenic mineral production, differential efficiencies were observed in assays performed on corroded iron coupons. Strain TCE1 produced a homogeneous layer of vivianite covering 80% of the corroded surface, while on the coupons treated with strain LBE, only 10% of the surface was covered by the same mineral. Finally, an attempt to reduce iron on archaeological objects was performed with strain TCE1, which led to the formation of both biogenic vivianite and magnetite on the surface of the artifacts. These results demonstrate the potential of this biological treatment for stabilizing archaeological iron as a promising alternative to traditional conservation-restoration methods.IMPORTANCE Since the Iron Age, iron has been a fundamental material for the building of objects used in everyday life. However, due to its reactivity, iron can be easily corroded, and the physical stability of the object built is at risk. This is particularly true for archaeological objects on which a potentially unstable corrosion layer is formed during the time the object is buried. After excavation, changes in environmental conditions (e.g., higher oxygen concentration or lower humidity) alter the stability of the corrosion layer and can lead to the total destruction of the object. In this study, we demonstrate the feasibility of an innovative treatment based on bacterial iron reduction and biogenic mineral formation to stabilize the corrosion layer and protect these objects.
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Wang H, Wilksch JJ, Chen L, Tan JWH, Strugnell RA, Gee ML. Influence of Fimbriae on Bacterial Adhesion and Viscoelasticity and Correlations of the Two Properties with Biofilm Formation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:100-106. [PMID: 27959542 DOI: 10.1021/acs.langmuir.6b03764] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The surface polymers of bacteria determine the ability of bacteria to adhere to a substrate for colonization, which is an essential step for a variety of microbial processes, such as biofilm formation and biofouling. Capsular polysaccharides and fimbriae are two major components on a bacterial surface, which are critical for mediating cell-surface interactions. Adhesion and viscoelasticity of bacteria are two major physical properties related to bacteria-surface interactions. In this study, we employed atomic force microscopy (AFM) to interrogate how the adhesion work and the viscoelasticity of a bacterial pathogen, Klebsiella pneumoniae, influence biofilm formation. To do this, the wild-type, type 3 fimbriae-deficient, and type 3 fimbriae-overexpressed K. pneumoniae strains have been investigated in an aqueous environment. The results show that the measured adhesion work is positively correlated to biofilm formation; however, the viscoelasticity is not correlated to biofilm formation. This study indicates that AFM-based adhesion measurements of bacteria can be used to evaluate the function of bacterial surface polymers in biofilm formation and to predict the ability of bacterial biofilm formation.
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Affiliation(s)
- Huabin Wang
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences , Chongqing 400714, China
- Key Laboratory of Interfacial Physics and Technology, Chinese Academy of Sciences , Shanghai 201800, China
| | | | - Ligang Chen
- Chongqing Key Laboratory of Multi-Scale Manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences , Chongqing 400714, China
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45
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Mularski A, Separovic F. Atomic Force Microscopy Studies of the Interaction of Antimicrobial Peptides with Bacterial Cells. Aust J Chem 2017. [DOI: 10.1071/ch16425] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Antimicrobial peptides (AMPs) are promising therapeutic alternatives to conventional antibiotics. Many AMPs are membrane-active but their mode of action in killing bacteria or in inhibiting their growth remains elusive. Recent studies indicate the mechanism of action depends on peptide structure and lipid components of the bacterial cell membrane. Owing to the complexity of working with living cells, most of these studies have been conducted with synthetic membrane systems, which neglect the possible role of bacterial surface structures in these interactions. In recent years, atomic force microscopy has been utilized to study a diverse range of biological systems under non-destructive, physiologically relevant conditions that yield in situ biophysical measurements of living cells. This approach has been applied to the study of AMP interaction with bacterial cells, generating data that describe how the peptides modulate various biophysical behaviours of individual bacteria, including the turgor pressure, cell wall elasticity, bacterial capsule thickness, and organization of bacterial adhesins.
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Xu J, He W, Wang Z, Zhang D, Sun J, Zhou J, Li Y, Su X. A Comparison of Molecular Biology Mechanism of Shewanella putrefaciens between Fresh and Terrestrial Sewage Wastewater. Front Bioeng Biotechnol 2016; 4:86. [PMID: 27867934 PMCID: PMC5095135 DOI: 10.3389/fbioe.2016.00086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Accepted: 10/21/2016] [Indexed: 11/13/2022] Open
Abstract
Municipal and industrial wastewater is often discharged into the environment without appropriate treatment, especially in developing countries. As a result, many rivers and oceans are contaminated. It is urgent to control and administer treatments to these contaminated rivers and oceans. However, most mechanisms of bacterial colonization in contaminated rivers and oceans were unknown, especially in sewage outlets. We found Shewanella putrefaciens to be the primary bacteria in the terrestrial sewage wastewater outlets around Ningbo City, China. Therefore, in this study, we applied a combination of differential proteomics, metabolomics, and real-time fluorescent quantitative PCR techniques to identify bacteria intracellular metabolites. We found S. putrefaciens had 12 different proteins differentially expressed in freshwater culture than when grown in wastewater, referring to the formation of biological membranes (Omp35, OmpW), energy metabolism (SOD, deoxyribose-phosphate pyrophosphokinase), fatty acid metabolism (beta-ketoacyl synthase), secondary metabolism, TCA cycle, lysine degradation (2-oxoglutarate reductase), and propionic acid metabolism (succinyl coenzyme A synthetase). The sequences of these 12 differentially expressed proteins were aligned with sequences downloaded from NCBI. There are also 27 differentially concentrated metabolites detected by NMR, including alcohols (ethanol, isopropanol), amines (dimethylamine, ethanolamine), amino acids (alanine, leucine), amine compounds (bilinerurine), nucleic acid compounds (nucleosides, inosines), and organic acids (formate, acetate). Formate and ethanolamine show significant difference between the two environments and are possibly involved in energy metabolism, glycerophospholipid and ether lipids metabolism to provide energy supply, and material basis for engraftment in sewage. Because understanding S. putrefaciens's biological mechanism of colonization (protein, gene express, and metabolites) in terrestrial sewage outlets is so important to administering and improving contaminated river and to predicting and steering performance, we delved into the biological mechanism that sheds light on the effect of environmental conditions on metabolic pathways.
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Affiliation(s)
- Jiajie Xu
- School of Marine Science, Ningbo University, Ningbo, China; College of Engineering, China Agricultural University, Beijing, China
| | - Weina He
- School of Marine Science, Ningbo University , Ningbo , China
| | - Zhonghua Wang
- School of Marine Science, Ningbo University , Ningbo , China
| | - Dijun Zhang
- School of Marine Science, Ningbo University , Ningbo , China
| | - Jing Sun
- School of Marine Science, Ningbo University , Ningbo , China
| | - Jun Zhou
- School of Marine Science, Ningbo University , Ningbo , China
| | - Yanyan Li
- School of Marine Science, Ningbo University, Ningbo, China; Department of Food Science, Cornell University, Ithaca, NY, USA
| | - Xiurong Su
- School of Marine Science, Ningbo University , Ningbo , China
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A nanomechanical study of the effects of colistin on the Klebsiella pneumoniae AJ218 capsule. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2016; 46:351-361. [DOI: 10.1007/s00249-016-1178-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Revised: 09/30/2016] [Accepted: 10/05/2016] [Indexed: 01/30/2023]
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48
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Effect of Extracellular Polymeric Substances on Surface Properties and Attachment Behavior of Acidithiobacillus ferrooxidans. MINERALS 2016. [DOI: 10.3390/min6040100] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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49
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Ghosh S, Mohanty S, Akcil A, Sukla LB, Das AP. A greener approach for resource recycling: Manganese bioleaching. CHEMOSPHERE 2016; 154:628-639. [PMID: 27104228 DOI: 10.1016/j.chemosphere.2016.04.028] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2016] [Revised: 04/05/2016] [Accepted: 04/08/2016] [Indexed: 06/05/2023]
Abstract
In view of unremitting diminution of mineral resources, rising energy economics along with increasing global consumption of Manganese (Mn), development of environment friendly technologies for tapping alternate sources of Mn has gained importance lately. Mn recovery from mining residues using conventional approaches is extremely expensive due to high capital and energy costs involved. However lean grade ores present in millions of tons awaits the development of competent and cost effective extractive process. Mn recovery by biomining with diverse microbes is thereby recommended as a superior and green alternative to the current pyro metallurgical techniques. The synergistic effects of different factors are known to influence microbial leaching of mineral ores which includes microbiological, mineralogical, physicochemical and process parameters. Bacterial bioleaching is mostly due to enzymatic influence, however fungal bioleaching is non enzymatic. Genomic studies on microbial diversity and an insight of its metabolic pathways provides unique dimension to the mechanism of biomining microorganisms. The extraction of Mn has a massive future prospective and will play a remarkable role in altering the situation of ever-decreasing grades of ore. This review aims to encompass the different aspects of Mn bioleaching, the plethora of organisms involved, the mechanisms driving the process and the recent trends and future prospects of this green technology.
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Affiliation(s)
- S Ghosh
- Bioengineering & Bio-Mineral Processing Laboratory, Centre for Biotechnology, Siksha O Anusandhan University, Khandagiri Square, Bhubaneswar 751003, India
| | - S Mohanty
- Bioengineering & Bio-Mineral Processing Laboratory, Centre for Biotechnology, Siksha O Anusandhan University, Khandagiri Square, Bhubaneswar 751003, India
| | - A Akcil
- Mineral-Metal Recovery and Recycling (MMR&R) Research Group, Mineral Processing Division, Department of Mining Engineering, Suleyman Demirel University, TR32260 Isparta, Turkey
| | - L B Sukla
- Institute for Applied Environmental Biotechnology, Bhubaneswar 751021, Odisha, India
| | - A P Das
- Bioengineering & Bio-Mineral Processing Laboratory, Centre for Biotechnology, Siksha O Anusandhan University, Khandagiri Square, Bhubaneswar 751003, India.
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50
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Mularski A, Wilksch JJ, Hanssen E, Strugnell RA, Separovic F. Atomic force microscopy of bacteria reveals the mechanobiology of pore forming peptide action. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2016; 1858:1091-8. [DOI: 10.1016/j.bbamem.2016.03.002] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2015] [Revised: 02/23/2016] [Accepted: 03/01/2016] [Indexed: 11/26/2022]
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