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Cheng Z, Nai S, Song S, Chen L, Yu Z. Photoinduced directional domain sliding motion in peptide hydrogels promotes ectodermal differentiation of embryonic stem cells. SCIENCE CHINA MATERIALS 2020; 63:467-478. [DOI: 10.1007/s40843-019-1184-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Accepted: 09/11/2019] [Indexed: 08/30/2023]
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52
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Buchanan C, Garvey CJ, Puskar L, Perlmutter P, Mechler A. Coordination crosslinking of helical substituted oligoamide nanorods with Cu(II). Supramol Chem 2020. [DOI: 10.1080/10610278.2020.1730839] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Claire Buchanan
- Department of Chemistry and Physics, La Trobe University, Bundoora, Australia
| | - Christopher J Garvey
- Australian Nuclear Science and Technology Organization (ANSTO), Lucas Heights, Australia
- Lund Institute for Advanced Neutron and X-ray Science (LINXS), Lund, Sweden
- Biofilms Research Center for Biointerfaces, Department of Biomedical Science, Health and Society, Malmö University, Malmö, Sweden
| | - Ljiljana Puskar
- Helmholtz Zentrum Berlin für Materialien und Energie GmbH, Berlin, Germany
| | - Patrick Perlmutter
- Department of Chemistry and Physics, La Trobe University, Bundoora, Australia
| | - Adam Mechler
- Department of Chemistry and Physics, La Trobe University, Bundoora, Australia
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53
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Sawada T, Inomata H, Serizawa T. Filamentous virus-based membrane prepared by chemical cross-linking at liquid/liquid interface for a tailored molecular separation system. J Memb Sci 2020. [DOI: 10.1016/j.memsci.2019.117595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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54
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Song S, Wang J, Song N, Di H, Liu D, Yu Z. Peptide interdigitation-induced twisted nanoribbons as chiral scaffolds for supramolecular nanozymes. NANOSCALE 2020; 12:2422-2433. [PMID: 31916547 DOI: 10.1039/c9nr09492j] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Establishing reliable strategies for rationally manipulating the organization of peptide building blocks and thereby precisely creating chiral nanostructures is challenging, while meaningful toward development of advanced functional materials. Here we report on a peptide-interdigitating mechanism for the reliable self-assembly of lipid-inspired amphiphiles (LIPIAs) into robust twisted nanoribbons by grafting domains to one alkyl tail of lipids as an extended element. Peptide interdigitation promoted the self-assembly of LIPIAs into twisted or flat nanoribbons driven by antiparallel or parallel β-sheet hydrogen bonds, respectively, strongly associated with the connecting direction of the incorporated domains. We found that the LIPIAs containing N-terminus-connected domains with either bulky or small side chain groups formed twisted nanoribbons in a broad pH range, thus implying a sequence- and pH-independent strategy for creation of robust chiral nanostructures. Integrating the resulting twisted nanoribbons with gold nanoparticles led to supramolecular nanozymes exhibiting the excellent catalytic activity and enantioselectivity of asymmetric oxidation of 3,4-dihyroxy-phenylalanine molecules. Our finding demonstrates that the peptide-interdigitating mechanism is a reliable strategy for precise creation of chiral nanostructures serving as chiral matrices for supramolecular nanozymes with improved catalytic performance, thus potentially paving the way towards advanced biomimetic systems resembling natural systems.
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Affiliation(s)
- Shuxin Song
- Key Laboratory of Functional Polymer Materials, Ministry of Education, State Key Laboratory of Medicinal Chemical Biology, Institute of Polymer Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
| | - Jingyu Wang
- School of Biomedical Engineering and Technology, Tianjin Medical University, Tianjin 300070, China
| | - Na Song
- Key Laboratory of Functional Polymer Materials, Ministry of Education, State Key Laboratory of Medicinal Chemical Biology, Institute of Polymer Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
| | - Huixia Di
- College of Chemistry, Research Center for Analytical Sciences, State Key Laboratory of Medicinal Chemical Biology, and Tianjin Key Laboratory of Molecular Recognition and Biosensing, Nankai University, Tianjin 300071, China
| | - Dingbin Liu
- College of Chemistry, Research Center for Analytical Sciences, State Key Laboratory of Medicinal Chemical Biology, and Tianjin Key Laboratory of Molecular Recognition and Biosensing, Nankai University, Tianjin 300071, China
| | - Zhilin Yu
- Key Laboratory of Functional Polymer Materials, Ministry of Education, State Key Laboratory of Medicinal Chemical Biology, Institute of Polymer Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
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55
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Datta D, Nagaraj R, Chaudhary N. Water-Alcohol Bigels from Fatty Acylated Dipeptides. J Phys Chem B 2020; 124:577-588. [PMID: 31880938 DOI: 10.1021/acs.jpcb.9b10002] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Peptide-based gels are emerging as an interesting class of biocompatible soft materials. 9-Fluorenylmethoxycarbonyl-protected amino acids and short peptides have gained considerable attention as promising gelators. Peptide amphiphiles, wherein an alkyl chain is appended to a polar peptidic moiety, are another important class of peptide-based gelators. Here, we report the alcohol/water bigels formed by the rather simple fatty acylated dipeptides wherein the peptidic moiety is made up of hydrophobic amino acids, viz., Val, Ile, and Leu. Lauroyl, myristoyl, and palmitoyl were investigated as the N-terminal fatty acyl groups. None of the lauroylated peptides caused gelation of methanol/water and ethanol/water mixtures up to 2 wt % peptide concentration. Eight out of the 27 peptides resulted in distinct bigels. The gels are composed of fibrous aggregates as characterized by electron microscopy. Infrared spectroscopy suggests the β-sheet conformation of the peptidic region in the gels. Using the Ma-IV ethanol/water bigel as the representative gel, entrapment and steady release of the anticancer drug docetaxel are demonstrated. Such bigels from rather simple amphipathic peptides that are easily synthesized and purified through solvent extraction could be attractive gelator candidates with potential application in drug delivery.
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Affiliation(s)
- Debika Datta
- Department of Biosciences and Bioengineering , Indian Institute of Technology Guwahati , Guwahati 781 039 , India
| | - Ramakrishnan Nagaraj
- CSIR-Centre for Cellular and Molecular Biology , Uppal Road , Hyderabad 500 007 , India
| | - Nitin Chaudhary
- Department of Biosciences and Bioengineering , Indian Institute of Technology Guwahati , Guwahati 781 039 , India
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56
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Secchi V, Iucci G, Dettin M, Zamuner A, De Rosa S, Tortora L, Battocchio C. Cysteine-Modified Self-Assembling Peptides on Gold: The Role of the Head and Tail. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:16593-16604. [PMID: 31751514 DOI: 10.1021/acs.langmuir.9b02503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Molecular self-assembly consists of the spontaneous aggregation of molecules into a well-defined structure guided by noncovalent bonds. The self-assembly strategy is ubiquitous in nature and recently has been proposed as a nature-mimetic strategy in polymer science and biomaterial engineering. In this context, we aim at designing and testing innovative but simple chemical strategies to efficiently modify surfaces by exploiting minor modifications in the bioactive molecule functionalities, for example, introducing cysteine (Cys) as a terminal residue in self-assembling peptides (SAPs). In this work, we report the attenuated total reflection-Fourier transform infrared spectroscopy, synchrotron radiation-induced X-ray photoelectron spectroscopy, near-edge X-ray absorption fine structure spectroscopy, and time-of-flight secondary ion mass spectrometry investigation of self-assembled layers of oligopeptides anchored onto gold surfaces through cysteine residues, opportunely inserted in an SAP (EAK16-II) main chain in three different positions: at the amine end group, at the carboxyl end group, and at both terminal groups (i.e., a bidentate SAP). This study, which allowed us to individuate in the bidentate SAP the best candidate for the controlled production of ordered SAP layers on the gold substrate surface, is envisaged to open wide perspectives for efficient chemical modification of surfaces with biomolecules, leading to obtaining innovative bioactive materials for applications in the field of tissue engineering.
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Affiliation(s)
- Valeria Secchi
- Department of Science , Roma Tre University of Rome , Via della Vasca Navale 79 , 00146 Rome , Italy
| | - Giovanna Iucci
- Department of Science , Roma Tre University of Rome , Via della Vasca Navale 79 , 00146 Rome , Italy
| | - Monica Dettin
- Department of Industrial Engineering , University of Padua , Via Marzolo 9 , Padua 35131 , Italy
| | - Annj Zamuner
- Department of Industrial Engineering , University of Padua , Via Marzolo 9 , Padua 35131 , Italy
| | - Stefania De Rosa
- Surface Analysis Laboratory INFN Roma Tre , via della Vasca Navale 84 , 00146 Rome , Italy
- Department of Mathematics and Physics , Roma Tre University , via della Vasca Navale 84 , 00146 Rome , Italy
| | - Luca Tortora
- Department of Science , Roma Tre University of Rome , Via della Vasca Navale 79 , 00146 Rome , Italy
- Surface Analysis Laboratory INFN Roma Tre , via della Vasca Navale 84 , 00146 Rome , Italy
| | - Chiara Battocchio
- Department of Science , Roma Tre University of Rome , Via della Vasca Navale 79 , 00146 Rome , Italy
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57
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Kramer N, Sarkar S, Kronik L, Ashkenasy N. Systematic modification of the indium tin oxide work function via side-chain modulation of an amino-acid functionalization layer. Phys Chem Chem Phys 2019; 21:21875-21881. [PMID: 31553031 DOI: 10.1039/c9cp04079j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Controlled modification of the semiconductor surface work function is of fundamental importance for improvements in the efficiency of (opto-)electronic devices. Binding amino acids to a semiconductor surface through their common carboxylic group offers a versatile tool for modulation of surface properties by the choice of their side chain. This approach is demonstrated here by tailoring the surface work function of indium tin oxide, one of the most abundant transparent electrodes in organic optoelectronic devices. We find that the work function can be systematically tuned by the side chain of the amino acid, resulting in either an increase or a decrease of the work function, over a large range of ∼250 meV. This side chain effect is mostly due to alteration of the dipole component perpendicular to the surface, with a generally smaller contribution for changes in surface band bending. These findings also shed light on electronic interactions at the interface between proteins and semiconductors, which are of importance for future bio-electronic devices.
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Affiliation(s)
- Naomi Kramer
- Department of Materials Engineering and Ilse Katz Institute for Nanoscale Science & Technology, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
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58
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Singh J, Kumar V, Kim KH, Rawat M. Biogenic synthesis of copper oxide nanoparticles using plant extract and its prodigious potential for photocatalytic degradation of dyes. ENVIRONMENTAL RESEARCH 2019; 177:108569. [PMID: 31352301 DOI: 10.1016/j.envres.2019.108569] [Citation(s) in RCA: 118] [Impact Index Per Article: 23.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2019] [Revised: 05/23/2019] [Accepted: 07/01/2019] [Indexed: 05/24/2023]
Abstract
The development of benign and efficient approaches for treating industrial grade toxic organic dyes is an ongoing challenge. To this end, copper oxide nanoparticles (CuO NPs) were prepared by a simple, environment friendly, and economical green synthesis procedure by using Psidium guajava leaf extract as reducing agent (i.e., for the reduction of metal salt) as well as capping agent and copper acetate monohydrate as metal salt. The formation of mono-dispersed and spherical (average size 2-6 nm with BET surface area 52.6 m2/g) CuO NPs was confirmed by various spectroscopic and microscopic techniques. The CuO NPs exhibited excellent degradation efficiency for the industrial dyes, i.e., Nile blue (NB) (93% removal in 120 min) and reactive yellow 160 (RY160) (81% removal in 120 min) with apparent rate constants of 0.023 and 0.014 min-1, respectively. The CuO catalyst was found to be reusable for photocatalytic dye degradation even after five consecutive cycles. The limit of detection (LOD) values for NB and RY160 were 4 and 9 mg/L, respectively. In light of their high reusability and photocatalytic efficiency along with adaptability to green synthesis, the use of biogenic CuO NPs is a promising option for the purification of water resources contaminated with industrial dye.
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Affiliation(s)
- Jagpreet Singh
- Department of Nanotechnology, Sri Guru Granth Sahib World University, Fatehgarh Sahib, 140406, Punjab, India
| | - Vanish Kumar
- National Agri-Food Biotechnology Institute (NABI), S.A.S. Nagar, Punjab, 140306, India
| | - Ki-Hyun Kim
- Department of Civil & Environmental Engineering, Hanyang University, Seoul, 04763, South Korea.
| | - Mohit Rawat
- Department of Nanotechnology, Sri Guru Granth Sahib World University, Fatehgarh Sahib, 140406, Punjab, India
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59
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Structure/function correlation of thixotropic additives based on three leaf-like triamide derivatives containing three alkyl-chains. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.04.094] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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60
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Datta D, Tiwari O, Gupta MK. Self-Assembly of Diphenylalanine-Peptide Nucleic Acid Conjugates. ACS OMEGA 2019; 4:10715-10728. [PMID: 31460170 PMCID: PMC6649282 DOI: 10.1021/acsomega.9b00047] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Accepted: 06/07/2019] [Indexed: 05/31/2023]
Abstract
The synthesis and self-assembled nanostructures of a series of nucleopeptides (NPs) derived from the dipeptide Phe-Phe and the peptide nucleic acid unit which are covalently attached through an amide or a triazole linker are described. Depending on the variables such as protecting groups, linkers, and nucleobases, spherical nanoparticles were observed through scanning electron microscopy and high-resolution transmission electron microscopy images, and the porous nature of representative NPs was corroborated by carboxyfluorescein entrapment. Hydrophobic substituents on different sites of NPs and solvents employed for peptide self-assembly played a crucial role for corresponding morphologies. The stability of nanoparticles was also probed under external stimuli such as pH, temperature, and enzymatic hydrolysis using proteolytic enzymes. The semiconducting nature of the NP-modified carbon electrodes suggested their potential use as a new capacitor material.
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61
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Ghosh G, Barman R, Sarkar J, Ghosh S. pH-Responsive Biocompatible Supramolecular Peptide Hydrogel. J Phys Chem B 2019; 123:5909-5915. [PMID: 31246033 DOI: 10.1021/acs.jpcb.9b02999] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Peptide-based hydrogels are highly promising for various biomedical applications owing to their precise self-assembly, biocompatibility, and sensitivity toward biologically relevant external stimuli. Herein, we report pH-responsive self-assembly and gelation of a highly biocompatible amphiphilic peptide PEP-1. This is an octa-peptide and double mutant of a naturally occurring β-strand peptide fragment of the protein Galectin-1, available in bovine spleen. PEP-1 was synthesized by using the Rink amide resin as the solid support in a homemade apparatus. At pH 7.4, it exhibits spontaneous gelation with very high yield stress of 88.0 Pa and gel-to-sol temperature of 84 °C at C = 2.0 wt %. Microscopy studies revealed entangled fibrillar morphology whereas circular dichroism, Fourier tranform IR, and Thioflavin T assay indicated formation of β-sheet rich secondary structure. The assembled state was found to be stable in neutral pH whereas either decrease or increase in the pH resulted in disassembly owing to the presence of the pH responsive Asp and Lys residues. The gel network showed ability to entrap water-soluble guest molecules such as Calcein which could be selectively released at acidic pH whereas under neutral condition the release was negligible. MTT assay revealed remarkable biocompatibility of the PEP-1 gel as almost 100% cells were alive after 48 h incubation in the presence of PEP-1 (2.0 mg/mL).
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Affiliation(s)
- Goutam Ghosh
- School of Applied and Interdisciplinary Sciences , Indian Association for the Cultivation of Science , 2A and 2B Raja S. C. Mullick Road , Kolkata 700032 , India
| | - Ranajit Barman
- School of Applied and Interdisciplinary Sciences , Indian Association for the Cultivation of Science , 2A and 2B Raja S. C. Mullick Road , Kolkata 700032 , India
| | - Jayita Sarkar
- School of Applied and Interdisciplinary Sciences , Indian Association for the Cultivation of Science , 2A and 2B Raja S. C. Mullick Road , Kolkata 700032 , India
| | - Suhrit Ghosh
- School of Applied and Interdisciplinary Sciences , Indian Association for the Cultivation of Science , 2A and 2B Raja S. C. Mullick Road , Kolkata 700032 , India
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62
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The Functional Mammalian CRES (Cystatin-Related Epididymal Spermatogenic) Amyloid is Antiparallel β-Sheet Rich and Forms a Metastable Oligomer During Assembly. Sci Rep 2019; 9:9210. [PMID: 31239483 PMCID: PMC6593142 DOI: 10.1038/s41598-019-45545-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Accepted: 06/06/2019] [Indexed: 12/15/2022] Open
Abstract
An amyloid matrix composed of several family 2 cystatins, including the reproductive cystatin CRES, is an integral structure in the mouse epididymal lumen and has proposed functions in sperm maturation and protection. Understanding how CRES amyloid assembles in vitro may provide clues on how the epididymal amyloid matrix forms in vivo. We therefore purified full-length CRES under nondenaturing conditions and followed its aggregation from monomer to amyloid under conditions that may approximate those in the epididymal lumen. CRES transitioned into a metastable oligomer that was resistant to aggregation and only over extended time formed higher-ordered amyloids. High protein concentrations facilitated oligomer assembly and also were required to maintain the metastable state since following dilution the oligomer was no longer detected. Similar to other amyloid precursors, the formation of CRES amyloids correlated with a loss of α-helix and a gain of β-sheet content. However, CRES is unique in that its amyloids are rich in antiparallel β-sheets instead of the more common parallel β-sheets. Taken together, our studies suggest that early metastable oligomers may serve as building blocks for functional amyloid assembly and further reveal that antiparallel β-sheet-rich amyloids can be functional forms.
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63
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Darnall SM, Li C, Dunbar M, Alsina M, Keten S, Helms BA, Xu T. Organic Nanotube with Subnanometer, pH-Responsive Lumen. J Am Chem Soc 2019; 141:10953-10957. [DOI: 10.1021/jacs.9b03732] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Shawn M. Darnall
- Department of Materials Science & Engineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Changyi Li
- The Molecular
Foundry, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Martha Dunbar
- Department of Civil & Environmental Engineering and Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Marco Alsina
- Department of Civil & Environmental Engineering and Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Sinan Keten
- Department of Civil & Environmental Engineering and Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Brett A. Helms
- The Molecular
Foundry, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Ting Xu
- Department of Materials Science & Engineering, University of California, Berkeley, Berkeley, California 94720, United States
- The Molecular
Foundry, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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64
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Saikia J, Pandey G, Sasidharan S, Antony F, Nemade HB, Kumar S, Chaudhary N, Ramakrishnan V. Electric Field Disruption of Amyloid Aggregation: Potential Noninvasive Therapy for Alzheimer's Disease. ACS Chem Neurosci 2019; 10:2250-2262. [PMID: 30707008 DOI: 10.1021/acschemneuro.8b00490] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
The aggregation of β-amyloid peptides is a key event in the formative stages of Alzheimer's disease. Promoting folding and inhibiting aggregation was reported as an effective strategy in reducing Aβ-elicited toxicity. This study experimentally investigates the influence of the external electric field (EF) and magnetic field (MF) of varying strengths on the in vitro fibrillogenesis of hydrophobic core sequence, Aβ16-22, and its parent peptide, Aβ1-42. Biophysical methods such as ThT fluorescence, static light scattering, circular dichroism, and infrared spectroscopy suggest that EF has a stabilizing effect on the secondary structure, initiating a conformational switch of Aβ16-22 and Aβ1-42 from β to non-β conformation. This observation was further corroborated by dynamic light scattering and transmission electron microscopic studies. To mimic in vivo conditions, we repeated ThT fluorescence assay with Aβ1-42 in human cerebrospinal fluid to verify EF-mediated modulation. The self-seeding of Aβ1-42 and cross-seeding with Aβ1-40 to verify that the autocatalytic amplification of self-assembly as a result of secondary nucleation also yields comparable results in EF-exposed and unexposed samples. Aβ-elicited toxicity of EF-treated samples in two neuroblastoma cell lines (SH-SY5Y and IMR-32) and human embryonic kidney cell line (HEK293) were found to be 15-38% less toxic than the EF untreated ones under identical conditions. Experiments with fluorescent labeled Aβ1-42 to correlate reduced cytotoxicity and cell internalization suggest a comparatively smaller uptake of the EF-treated peptides. Our results provide a scientific roadmap for future noninvasive, therapeutic solutions for the treatment of Alzheimer's disease.
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65
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Secchi V, Franchi S, Ciccarelli D, Dettin M, Zamuner A, Serio A, Iucci G, Battocchio C. Biofunctionalization of TiO 2 Surfaces with Self-Assembling Layers of Oligopeptides Covalently Grafted to Chitosan. ACS Biomater Sci Eng 2019; 5:2190-2199. [PMID: 33405771 DOI: 10.1021/acsbiomaterials.9b00430] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
In the field of tissue engineering, a promising approach to obtain a bioactive, biomimetic, and antibiotic implant is the functionalization of a "classical" biocompatible material, for example, titanium, with appropriate biomolecules. For this purpose, we propose preparing self-assembling films of multiple components, allowing the mixing of different biofunctionalities "on demand". Self-assembling peptides (SAPs) are synthetic materials characterized by the ability to self-organize in nanostructures both in aqueous solution and as thin or thick films. Moreover, ordered layers of SAPs adhere on titanium surface as a scaffold coating to mimic the extracellular matrix. Chitosan is a versatile hydrophilic polysaccharide derived from chitin, with a broad antimicrobial spectrum to which Gram-negative and Gram-positive bacteria and fungi are highly susceptible, and is already known in the literature for the ability of its derivatives to firmly graft titanium alloys and show protective effects against some bacterial species, either alone or in combination with other antimicrobial substances such as antibiotics or antimicrobial peptides. In this context, we functionalized titanium surfaces with chitosan grafted to EAK16-II (a SAP), obtaining layer-by-layer structures of different degrees of order, depending on the preparative stoichiometry and path. The chemical composition, molecular structure, and arrangement of the obtained biofunctionalized surfaces were investigated by surface-sensitive techniques such as reflection-absorption infrared spectroscopy (RAIRS) and state-of-the-art synchrotron radiation-induced spectroscopies as X-ray photoemission spectroscopy (SR-XPS), and near-edge X-ray absorption fine structure (NEXAFS). Furthermore, was demonstrated that surfaces coated with EAK and Chit-EAK can support hNPs cell attachment and growth.
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Affiliation(s)
- Valeria Secchi
- Department of Science, Roma Tre University of Rome Via della Vasca Navale 79, Rome 00146, Italy
| | - Stefano Franchi
- Elettra-Sincrotrone Trieste S.c.p.A., Strada statale 14, km 163.5, Basovizza (Trieste) 34149, Italy
| | - Davide Ciccarelli
- Department of Science, Roma Tre University of Rome Via della Vasca Navale 79, Rome 00146, Italy
| | - Monica Dettin
- Department of Industrial Engineering, University of Padua, Via Marzolo, 9, Padua 35131, Italy
| | - Annj Zamuner
- Department of Industrial Engineering, University of Padua, Via Marzolo, 9, Padua 35131, Italy
| | - Andrea Serio
- Centre for Craniofacial & Regenerative Biology, King's College London, London SE1 9RT, United Kingdom
| | - Giovanna Iucci
- Department of Science, Roma Tre University of Rome Via della Vasca Navale 79, Rome 00146, Italy
| | - Chiara Battocchio
- Department of Science, Roma Tre University of Rome Via della Vasca Navale 79, Rome 00146, Italy
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66
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Bansal R, Care A, Lord MS, Walsh TR, Sunna A. Experimental and theoretical tools to elucidate the binding mechanisms of solid-binding peptides. N Biotechnol 2019; 52:9-18. [PMID: 30954671 DOI: 10.1016/j.nbt.2019.04.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Revised: 03/31/2019] [Accepted: 04/01/2019] [Indexed: 12/19/2022]
Abstract
The interactions between biomolecules and solid surfaces play an important role in designing new materials and applications which mimic nature. Recently, solid-binding peptides (SBPs) have emerged as potential molecular building blocks in nanobiotechnology. SBPs exhibit high selectivity and binding affinity towards a wide range of inorganic and organic materials. Although these peptides have been widely used in various applications, there is a need to understand the interaction mechanism between the peptide and its material substrate, which is challenging both experimentally and theoretically. This review describes the main characterisation techniques currently available to study SBP-surface interactions and their contribution to gain a better insight for designing new peptides for tailored binding.
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Affiliation(s)
- Rachit Bansal
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; ARC Centre of Excellence for Nanoscale Biophotonics, Macquarie University, Sydney, NSW 2109, Australia
| | - Andrew Care
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; ARC Centre of Excellence for Nanoscale Biophotonics, Macquarie University, Sydney, NSW 2109, Australia
| | - Megan S Lord
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, NSW 2052, Australia
| | - Tiffany R Walsh
- Institute for Frontier Materials, Deakin University, Geelong, Victoria 3216, Australia
| | - Anwar Sunna
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; ARC Centre of Excellence for Nanoscale Biophotonics, Macquarie University, Sydney, NSW 2109, Australia; Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia.
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67
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Zhang H, Lou S, Yu Z. Polar-π Interactions Promote Self-assembly of Dipeptides into Laminated Nanofibers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:4710-4717. [PMID: 30836752 DOI: 10.1021/acs.langmuir.9b00077] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Precise incorporation of functional residues into sequences allows for tailoring the noncovalent interactions between peptides to guide their self-assembly into well-defined nanostructures, thus facilitating creation of artificial functional materials resembling natural systems. Here, we report on the self-assembly of dipeptides consisting of one fluorinated phenylalanine unit (Z residue) and one natural aromatic residue into laminated nanofibers predominately driven by polar-π interactions. On the basis of characterizations using transmission electron microscopy, scanning electron microscopy, atomic force microscopy, circular dichroism, Fourier transform infrared spectroscopy, and thioflavin T binding assay, we found that the face-centered stacking pattern of the dipeptides FZ, ZF, and ZY stabilized by the polar-π interactions and antiparallel β-sheet H-bonding interactions led to lamination of nanofibers and formation of ribbonlike nanostructures. Our findings demonstrate that incorporation of fluorinated aromatic units into short peptides not only promotes of polar-π interactions as alternative self-assembling driving forces but also governs the organizing pattern of peptides, thus benefiting creation of well-defined peptide nanostructures.
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Affiliation(s)
- Huiru Zhang
- Key Laboratory of Functional Polymer Materials, Ministry of Education, State Key Laboratory of Medicinal Chemical Biology, Institute of Polymer Chemistry , College of Chemistry, Nankai University , Weijin Road 94 , Tianjin 300071 , China
| | - Shaofeng Lou
- Key Laboratory of Functional Polymer Materials, Ministry of Education, State Key Laboratory of Medicinal Chemical Biology, Institute of Polymer Chemistry , College of Chemistry, Nankai University , Weijin Road 94 , Tianjin 300071 , China
| | - Zhilin Yu
- Key Laboratory of Functional Polymer Materials, Ministry of Education, State Key Laboratory of Medicinal Chemical Biology, Institute of Polymer Chemistry , College of Chemistry, Nankai University , Weijin Road 94 , Tianjin 300071 , China
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68
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Ramstedt M, Ribeiro IAC, Bujdakova H, Mergulhão FJM, Jordao L, Thomsen P, Alm M, Burmølle M, Vladkova T, Can F, Reches M, Riool M, Barros A, Reis RL, Meaurio E, Kikhney J, Moter A, Zaat SAJ, Sjollema J. Evaluating Efficacy of Antimicrobial and Antifouling Materials for Urinary Tract Medical Devices: Challenges and Recommendations. Macromol Biosci 2019; 19:e1800384. [PMID: 30884146 DOI: 10.1002/mabi.201800384] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Revised: 01/18/2019] [Indexed: 01/05/2023]
Abstract
In Europe, the mean incidence of urinary tract infections in intensive care units is 1.1 per 1000 patient-days. Of these cases, catheter-associated urinary tract infections (CAUTI) account for 98%. In total, CAUTI in hospitals is estimated to give additional health-care costs of £1-2.5 billion in the United Kingdom alone. This is in sharp contrast to the low cost of urinary catheters and emphasizes the need for innovative products that reduce the incidence rate of CAUTI. Ureteral stents and other urinary-tract devices suffer similar problems. Antimicrobial strategies are being developed, however, the evaluation of their efficacy is very challenging. This review aims to provide considerations and recommendations covering all relevant aspects of antimicrobial material testing, including surface characterization, biocompatibility, cytotoxicity, in vitro and in vivo tests, microbial strain selection, and hydrodynamic conditions, all in the perspective of complying to the complex pathology of device-associated urinary tract infection. The recommendations should be on the basis of standard assays to be developed which would enable comparisons of results obtained in different research labs both in industry and in academia, as well as provide industry and academia with tools to assess the antimicrobial properties for urinary tract devices in a reliable way.
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Affiliation(s)
| | - Isabel A C Ribeiro
- Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, 1649-004, Lisbon, Portugal
| | - Helena Bujdakova
- Department of Microbiology and Virology, Faculty of Natural Sciences, Comenius University in Bratislava, 81499, Bratislava 1, Slovakia
| | - Filipe J M Mergulhão
- Laboratory for Process Engineering, Environment, Biotechnology and Energy (LEPABE), Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
| | - Luisa Jordao
- Department of Environmental Health, Research and Development Unit, National Institute of Health Dr. Ricardo Jorge (INSA), Avenida Padre Cruz, 1649-016, Lisbon, Portugal
| | - Peter Thomsen
- BioModics ApS, Stengårds Alle 31A, DK-2800, Lyngby, Denmark
| | - Martin Alm
- BioModics ApS, Stengårds Alle 31A, DK-2800, Lyngby, Denmark
| | - Mette Burmølle
- Department of Biology, University of Copenhagen, 2100, Copenhagen, Denmark
| | - Todorka Vladkova
- Department of Polymers, University of Chemical Technology and Metallurgy (UCTM), 8 Kliment Ohridski Blvd, 1756, Sofia, Bulgaria
| | - Fusun Can
- Department of Medical Microbiology, School of Medicine, Koc University, 34450, Sariyer, Istanbul, Turkey
| | - Meital Reches
- Institute of Chemistry and the Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
| | - Martijn Riool
- Department of Medical Microbiology, Amsterdam UMC, Amsterdam Infection and Immunity Institute, University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands
| | - Alexandre Barros
- 3B's Research Group, I3Bs Research Institute on Biomaterials, Biodegradables and Biomimetics, University of Minho, Guimarães, 4710-057, Braga, Portugal
| | - Rui L Reis
- 3B's Research Group, I3Bs Research Institute on Biomaterials, Biodegradables and Biomimetics, University of Minho, Guimarães, 4710-057, Braga, Portugal
| | - Emilio Meaurio
- Department of Mining-Metallurgy Engineering and Materials Science, POLYMAT, School of Engineering, University of the Basque Country, 48940 Leina, Bizkaia, Bilbao, Spain
| | - Judith Kikhney
- Biofilmcenter, Department of Microbiology, Infectious Diseases and Immunology, Charité University Medicine Berlin, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Annette Moter
- Biofilmcenter, Department of Microbiology, Infectious Diseases and Immunology, Charité University Medicine Berlin, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Sebastian A J Zaat
- Department of Medical Microbiology, Amsterdam UMC, Amsterdam Infection and Immunity Institute, University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands
| | - Jelmer Sjollema
- University of Groningen, University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
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69
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Castelletto V, Edwards-Gayle CJC, Hamley IW, Barrett G, Seitsonen J, Ruokolainen J. Peptide-Stabilized Emulsions and Gels from an Arginine-Rich Surfactant-like Peptide with Antimicrobial Activity. ACS APPLIED MATERIALS & INTERFACES 2019; 11:9893-9903. [PMID: 30785266 PMCID: PMC7005944 DOI: 10.1021/acsami.9b00581] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Accepted: 02/20/2019] [Indexed: 05/05/2023]
Abstract
The preparation of hydrogels and stable emulsions is important in the formulation of many functional nanostructured soft materials. We investigate the multifunctional self-assembly and bioactivity properties of a novel surfactant-like peptide (SLP) that shows antimicrobial activity, is able to form hydrogels without pH adjustment, and is able to stabilize oil-in-water emulsions. Furthermore, we demonstrate on-demand de-emulsification in response to the protease enzyme elastase. We show that SLP (Ala)9-Arg (A9R) forms β-sheet fibers above a critical aggregation concentration and that water-in-oil emulsions are stabilized by a coating of β-sheet fibers around the emulsion droplets. Furthermore, we demonstrate enzyme-responsive de-emulsification, which has potential in the development of responsive release systems. The peptide shows selective antimicrobial activity against Gram-negative pathogens including Pseudomonas aeruginosa, which causes serious infections. Our results highlight the utility of SLPs in the stabilization of oil/water emulsions and the potential for these to be used to formulate antimicrobial peptide emulsions which are additionally responsive to protease. The peptide A9R has pronounced antibacterial activity against clinically challenging pathogens, and its ability to form β-sheet fibers plays a key role in its diverse structural properties, ranging from hydrogel formation to emulsion stabilization.
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Affiliation(s)
- Valeria Castelletto
- Department of Chemistry and School of Biological
Sciences, University of Reading, Reading RG6 6AD, United Kingdom
| | | | - Ian W. Hamley
- Department of Chemistry and School of Biological
Sciences, University of Reading, Reading RG6 6AD, United Kingdom
| | - Glyn Barrett
- Department of Chemistry and School of Biological
Sciences, University of Reading, Reading RG6 6AD, United Kingdom
| | - Jani Seitsonen
- Nanomicroscopy Center, Aalto University, Puumiehenkuja
2, FIN-02150 Espoo, Finland
| | - Janne Ruokolainen
- Nanomicroscopy Center, Aalto University, Puumiehenkuja
2, FIN-02150 Espoo, Finland
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70
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Application of IR spectra of two successive isotope labeled residues to the evaluation of dihedral angles of polyproline II structure. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.01.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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71
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Wang S, He W, Xiao C, Tao Y, Wang X. Synthesis of Y-Shaped OEGylated Poly(amino acid)s: The Impact of OEG Architecture. Biomacromolecules 2019; 20:1655-1666. [DOI: 10.1021/acs.biomac.9b00026] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Shixue Wang
- Key Laboratory of Polymer Ecomaterials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Renmin Street 5625, Changchun 130022, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing 100039, People’s Republic of China
| | - Wenjing He
- Key Laboratory of Polymer Ecomaterials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Renmin Street 5625, Changchun 130022, People’s Republic of China
- University of Science and Technology of China, Hefei 230026, People’s Republic of China
| | - Chunsheng Xiao
- Key Laboratory of Polymer Ecomaterials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Renmin Street 5625, Changchun 130022, People’s Republic of China
| | - Youhua Tao
- Key Laboratory of Polymer Ecomaterials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Renmin Street 5625, Changchun 130022, People’s Republic of China
- University of Science and Technology of China, Hefei 230026, People’s Republic of China
| | - Xianhong Wang
- Key Laboratory of Polymer Ecomaterials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Renmin Street 5625, Changchun 130022, People’s Republic of China
- University of Science and Technology of China, Hefei 230026, People’s Republic of China
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72
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Biswas S, Das AK. Tuning the Handedness: Role of Chiral Component in Peptide-Appended Bolaamphiphile-Based Coassembled Hydrogels. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:2383-2391. [PMID: 30626180 DOI: 10.1021/acs.langmuir.8b03651] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Chirality is the intrinsic property of a molecule that can be tuned by the change in chirality of a molecule or by the addition of a chiral component as an external stimulus. An l-leucine-based dipeptide-appended succinic acid-based bolaamphiphile coassembled with d-tartaric acid to form supramolecular right-handed nanostructured hydrogel, whereas l-tartaric acid coassembled to form supramolecular left-handed nanostructured hydrogel. Scanning electron microscopy and transmission electron microscopy experiments revealed the right- and left-handed helical nanofibers that are responsible for the formation of supramolecular nanostructured hydrogels. The synergistic chiral effect of l-leucine in peptide bolaamphiphile and d/l-tartaric acid plays a significant role in bicomponent gelation with helical nanofibers. The first two amino acids attached to both sides of succinic acid moiety act as a tuning button for supramolecular chirality of amino acids/peptides attached with succinic acid-based bolaamphiphiles. The second amino acid plays the role of modulating supramolecular chirality if the first two amino acids act neutrally to the chirality of bolaamphiphiles, which was confirmed by circular dichroism spectroscopy.
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Affiliation(s)
- Sagar Biswas
- Department of Chemistry , Indian Institute of Technology Indore , Indore 453552 , India
| | - Apurba K Das
- Department of Chemistry , Indian Institute of Technology Indore , Indore 453552 , India
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73
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Gagni P, Romanato A, Bergamaschi G, Bettotti P, Vanna R, Piotto C, Morasso CF, Chiari M, Cretich M, Gori A. A self-assembling peptide hydrogel for ultrarapid 3D bioassays. NANOSCALE ADVANCES 2019; 1:490-497. [PMID: 36132256 PMCID: PMC9473263 DOI: 10.1039/c8na00158h] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2018] [Accepted: 10/22/2018] [Indexed: 05/08/2023]
Abstract
Biosensing analytical platforms rely on the intimate structure-function relationship of immobilized probes. In this context, hydrogels are appealing semi-wet systems to locally confine biomolecules while preserving their structural integrity and function. Yet, limitations imposed by biomolecule diffusion rates or fabrication difficulties still hamper their broad application. Here, using a self-assembling peptide, a printable and self-adhesive hydrogel was obtained and applied to fabricate arrays of localized bio-functional 3D microenvironments on analytical interfaces. This soft matrix represents a robust and versatile material, allowing fast and selective tuning of analyte diffusion, which is exploited here to run in-gel immunoassays under solution-like conditions in an unprecedented (<10 min) time frame. The developed material overcomes major limitations associated with hydrogels for bioassays, widening the prospects for easy fabrication of multifunctional bio-interfaces for high-throughput, molecular recognition assays.
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Affiliation(s)
- Paola Gagni
- National Research Council of Italy, Istituto di Chimica del Riconoscimento Molecolare (ICRM) Via Mario Bianco, 9 20131-Milano Italy
| | - Alessandro Romanato
- National Research Council of Italy, Istituto di Chimica del Riconoscimento Molecolare (ICRM) Via Mario Bianco, 9 20131-Milano Italy
| | - Greta Bergamaschi
- National Research Council of Italy, Istituto di Chimica del Riconoscimento Molecolare (ICRM) Via Mario Bianco, 9 20131-Milano Italy
| | - Paolo Bettotti
- Nanoscience Laboratory, Department of Physics, University of Trento Via Sommarive 14 38123 Povo Italy
| | - Renzo Vanna
- Istituti Clinici Scientifici Maugeri IRCCS Via Maugeri 4 27100 Pavia Italy
| | - Chiara Piotto
- Nanoscience Laboratory, Department of Physics, University of Trento Via Sommarive 14 38123 Povo Italy
| | - Carlo F Morasso
- Istituti Clinici Scientifici Maugeri IRCCS Via Maugeri 4 27100 Pavia Italy
| | - Marcella Chiari
- National Research Council of Italy, Istituto di Chimica del Riconoscimento Molecolare (ICRM) Via Mario Bianco, 9 20131-Milano Italy
| | - Marina Cretich
- National Research Council of Italy, Istituto di Chimica del Riconoscimento Molecolare (ICRM) Via Mario Bianco, 9 20131-Milano Italy
| | - Alessandro Gori
- National Research Council of Italy, Istituto di Chimica del Riconoscimento Molecolare (ICRM) Via Mario Bianco, 9 20131-Milano Italy
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74
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Wang P, Wang Y, Liu L, Zhao J, Tian Z, Qi W, Zhang J, Zhao H, He M. Self-assembled chiral nanoribbons studied by terahertz time-domain spectroscopy and other biological methods. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.01.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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75
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Investigation of α-amino acid N-carboxyanhydrides by X-ray diffraction for controlled ring-opening polymerization. Tetrahedron Lett 2019. [DOI: 10.1016/j.tetlet.2018.12.028] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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76
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Lamas A, Guerra A, Amorín M, Granja JR. New self-assembling peptide nanotubes of large diameter using δ-amino acids. Chem Sci 2018; 9:8228-8233. [PMID: 30542571 PMCID: PMC6240800 DOI: 10.1039/c8sc02276c] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Accepted: 08/26/2018] [Indexed: 11/21/2022] Open
Abstract
Here we show that 4-aminocyclohexanecarboxylic acid is a rigid stretcher building block for the preparation of cyclic peptides that self-assemble to form peptide nanotubes with large diameter and hydrophobic pores. The hydrophobic properties of the resulting nanotubes provided by the two methylene groups per δ-residue allow the encapsulation of C60 moieties forming a new type of bionanopeapod structure.
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Affiliation(s)
- Alejandro Lamas
- Singular Research Centre in Chemical Biology and Molecular Materials, (CIQUS) , Organic Chemistry Department , University of Santiago de Compostela (USC) , 15782 Santiago de Compostela , Spain . ;
| | - Arcadio Guerra
- Singular Research Centre in Chemical Biology and Molecular Materials, (CIQUS) , Organic Chemistry Department , University of Santiago de Compostela (USC) , 15782 Santiago de Compostela , Spain . ;
| | - Manuel Amorín
- Singular Research Centre in Chemical Biology and Molecular Materials, (CIQUS) , Organic Chemistry Department , University of Santiago de Compostela (USC) , 15782 Santiago de Compostela , Spain . ;
| | - Juan R Granja
- Singular Research Centre in Chemical Biology and Molecular Materials, (CIQUS) , Organic Chemistry Department , University of Santiago de Compostela (USC) , 15782 Santiago de Compostela , Spain . ;
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77
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Sawada T, Murata Y, Marubayashi H, Nojima S, Morikawa J, Serizawa T. High Thermal Diffusivity in Thermally Treated Filamentous Virus-Based Assemblies with a Smectic Liquid Crystalline Orientation. Viruses 2018; 10:E608. [PMID: 30400191 PMCID: PMC6265685 DOI: 10.3390/v10110608] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Revised: 10/22/2018] [Accepted: 10/31/2018] [Indexed: 12/21/2022] Open
Abstract
Polymers are generally considered thermal insulators because the amorphous arrangement of the polymeric chains reduces the mean free path of heat-conducting phonons. Recent studies reveal that individual chains of polymers with oriented structures could have high thermal conductivity, because such stretched polymeric chains effectively conduct phonons through polymeric covalent bonds. Previously, we have found that the liquid crystalline assembly composed of one of the filamentous viruses, M13 bacteriophages (M13 phages), shows high thermal diffusivity even though the assembly is based on non-covalent bonds. Despite such potential applicability of biopolymeric assemblies as thermal conductive materials, stability against heating has rarely been investigated. Herein, we demonstrate the maintenance of high thermal diffusivity in smectic liquid crystalline-oriented M13 phage-based assemblies after high temperature (150 °C) treatment. The liquid crystalline orientation of the M13 phage assemblies plays an important role in the stability against heating processes. Our results provide insight into the future use of biomolecular assemblies for reliable thermal conductive materials.
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Affiliation(s)
- Toshiki Sawada
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan.
- Precursory Research for Embryonic Science and Technology, Japan Science and Technology, Saitama 332-0012, Japan.
| | - Yuta Murata
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan.
| | - Hironori Marubayashi
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan.
| | - Shuichi Nojima
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan.
| | - Junko Morikawa
- Department of Materials Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan.
| | - Takeshi Serizawa
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan.
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78
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Agbaje OBA, Ben Shir I, Zax DB, Schmidt A, Jacob DE. Biomacromolecules within bivalve shells: Is chitin abundant? Acta Biomater 2018; 80:176-187. [PMID: 30217589 DOI: 10.1016/j.actbio.2018.09.009] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Revised: 09/05/2018] [Accepted: 09/10/2018] [Indexed: 01/09/2023]
Abstract
Bivalve shells are inorganic-organic nanocomposites whose material properties outperform their purely inorganic mineral counterparts. Most typically the inorganic phase is a polymorph of CaCO3, while the organic phase contains biopolymers which have been presumed to be chitin and/or proteins. Identifying the biopolymer phase is therefore a crucial step in improving our understanding of design principles relevant to biominerals. In this work we study seven shells; four are examples of nacroprismatic shells (Alathyria jacksoni, Pinctada maxima, Hyriopsis cumingii and Cucumerunio novaehollandiae), one homogeneous (Arctica islandica), and two are crossed lamellar (Callista kingii, Tridacna gigas). Both intact shells, their organic extracts as isolated after decalcification in acid, and the periostracum overlay have been studied by solid-state CP-MAS NMR, FTIR, SEM and chemical analysis. In none of the shells examined in this work do we find a significant contribution to the organic fraction from chitin or its derivatives despite popular models of bivalve biomineralization which assume abundant chitin in the organic fraction of mollusk bivalve shells. In each of the nacroprismatic extracts the 13C NMR spectra represent similar proteinaceous material, Ala and Gly-rich and primarily organized as β-sheets. A different, yet highly conserved protein was found in the periostracum covering each of the three nacreous shells studied. The Arctica islandica shells with homogeneous microstructure contained proteins which do not appear to be silk-like, while in the crossed lamellar shells we extracted too little organic matter to characterize. STATEMENT OF SIGNIFICANCE: Hydrophobic macromolecules are structural components within the calcareous inorganic matrix of bivalve shells and are responsible for enhanced materials properties of the biominerals. Prevalent models suggest that chitin is such major hydrophobic component. Contrary to that we show that chitin is rare within the hydrophobic biopolymers which primarily consist of proteinaceous matter with structural motifs as silk-like β-sheets, or others yet to be determined. Recognizing that diverse proteinaceous motifs, devoid of abundant chitin, can yield the optimized mechanical properties of bivalve shells is critical both to understand the mechanistic pathways by which they regulate biomineralization and for the design of novel bioinspired materials.
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79
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Suárez‐Jiménez GM, Burgos‐Hernández A, Torres‐Arreola W, López‐Saiz CM, Velázquez Contreras CA, Ezquerra‐Brauer JM. Bioactive peptides from collagen hydrolysates from squid (
Dosidicus gigas
) by‐products fractionated by ultrafiltration. Int J Food Sci Technol 2018. [DOI: 10.1111/ijfs.13984] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- G. Miroslava Suárez‐Jiménez
- Departamento de Investigación y Posgrado en Alimentos Universidad de Sonora Apartado Postal 1658 Hermosillo Sonora Mexico
| | - Armando Burgos‐Hernández
- Departamento de Investigación y Posgrado en Alimentos Universidad de Sonora Apartado Postal 1658 Hermosillo Sonora Mexico
| | - Wilfrido Torres‐Arreola
- Departamento de Investigación y Posgrado en Alimentos Universidad de Sonora Apartado Postal 1658 Hermosillo Sonora Mexico
| | - Carmen M. López‐Saiz
- Departamento de Investigación y Posgrado en Alimentos Universidad de Sonora Apartado Postal 1658 Hermosillo Sonora Mexico
| | | | - J. Marina Ezquerra‐Brauer
- Departamento de Investigación y Posgrado en Alimentos Universidad de Sonora Apartado Postal 1658 Hermosillo Sonora Mexico
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80
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Manzo G, Serra I, Magrí A, Casu M, De Pinto V, Ceccarelli M, Scorciapino MA. Folded Structure and Membrane Affinity of the N-Terminal Domain of the Three Human Isoforms of the Mitochondrial Voltage-Dependent Anion-Selective Channel. ACS OMEGA 2018; 3:11415-11425. [PMID: 30320261 PMCID: PMC6173511 DOI: 10.1021/acsomega.8b01536] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Accepted: 09/11/2018] [Indexed: 06/08/2023]
Abstract
Voltage-dependent anion-selective channels (VDACs) are primarily located in the mitochondrial outer membrane (MOM). They are essential for the regulation of ion and metabolite exchanges. In particular, their role in energy-related nucleotide exchange has many implications in apoptosis, cancer, and neurodegenerative diseases. It has been proposed that VDACs' functions are regulated by mobility of the N-terminal helical domain, which is bound to the inner wall of the main β-barrel domain but exists in equilibrium between the bound-folded and the unbound-unfolded state. When the N-terminal domain detaches from the channel's wall and eventually leaves the lumen, it can either stay exposed to the cytosolic environment or interact with the outer leaflet of the MOM; then, it may also interact with other protein partners. In humans, three different VDAC isoforms are expressed at different tissue-specific levels with evidence of distinct roles. Although the N-terminal domains share high sequence similarity, important differences do exist, with the functionality of the entire protein mostly attributed to them. In this work, the three-dimensional structure and membrane affinity of the three isolated hVDAC N-terminal peptides have been compared through Fourier-transform infrared and NMR spectroscopy in combination with molecular dynamics simulations, and measurement of the surface pressure of lipid monolayers. Although peptides were studied as isolated from the β-barrel domain, the observed differences are relevant for those whole protein's functions in which a protein-protein interaction is mediated by the N-terminal domain.
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Affiliation(s)
- Giorgia Manzo
- Department
of Chemical and Geological Sciences, Cittadella Universitaria di Monserrato, Department of Physics,
Cittadella Universitaria di Monserrato, and Department
of Biomedical Sciences, Biochemistry Unit, Cittadella Universitaria
di Monserrato, University of Cagliari, S.P. 8 km 0.700, 09042 Monserrato, Cagliari, Italy
| | - Ilaria Serra
- Department
of Chemical and Geological Sciences, Cittadella Universitaria di Monserrato, Department of Physics,
Cittadella Universitaria di Monserrato, and Department
of Biomedical Sciences, Biochemistry Unit, Cittadella Universitaria
di Monserrato, University of Cagliari, S.P. 8 km 0.700, 09042 Monserrato, Cagliari, Italy
| | - Andrea Magrí
- Department of Biomedicine
and Biotechnology, Section of Biology and Genetics, University of Catania, Via Santa Sofia 97, 95123 Catania, Italy
| | - Mariano Casu
- Department
of Chemical and Geological Sciences, Cittadella Universitaria di Monserrato, Department of Physics,
Cittadella Universitaria di Monserrato, and Department
of Biomedical Sciences, Biochemistry Unit, Cittadella Universitaria
di Monserrato, University of Cagliari, S.P. 8 km 0.700, 09042 Monserrato, Cagliari, Italy
| | - Vito De Pinto
- Department of Biomedicine
and Biotechnology, Section of Biology and Genetics, University of Catania, Via Santa Sofia 97, 95123 Catania, Italy
| | - Matteo Ceccarelli
- Department
of Chemical and Geological Sciences, Cittadella Universitaria di Monserrato, Department of Physics,
Cittadella Universitaria di Monserrato, and Department
of Biomedical Sciences, Biochemistry Unit, Cittadella Universitaria
di Monserrato, University of Cagliari, S.P. 8 km 0.700, 09042 Monserrato, Cagliari, Italy
| | - Mariano Andrea Scorciapino
- Department
of Chemical and Geological Sciences, Cittadella Universitaria di Monserrato, Department of Physics,
Cittadella Universitaria di Monserrato, and Department
of Biomedical Sciences, Biochemistry Unit, Cittadella Universitaria
di Monserrato, University of Cagliari, S.P. 8 km 0.700, 09042 Monserrato, Cagliari, Italy
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81
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Díaz Casas A, Casanova Sepúlveda G, Sánchez Negrón O, Caro Muñiz AP, Malavé Ramos SR, Cebollero López AR, Pastrana-Ríos B. Molecular biophysical characterization of the third FF domain of Homo sapiens Prp40 homolog A. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.04.059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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82
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Castelletto V, Barnes RH, Karatzas KA, Edwards-Gayle CJC, Greco F, Hamley IW, Rambo R, Seitsonen J, Ruokolainen J. Arginine-Containing Surfactant-Like Peptides: Interaction with Lipid Membranes and Antimicrobial Activity. Biomacromolecules 2018; 19:2782-2794. [PMID: 29738229 DOI: 10.1021/acs.biomac.8b00391] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The activity of antimicrobial peptides stems from their interaction with bacterial membranes, which are disrupted according to a number of proposed mechanisms. Here, we investigate the interaction of a model antimicrobial peptide that contains a single arginine residue with vesicles containing model lipid membranes. The surfactant-like peptide Ala6-Arg (A6R) is studied in the form where both termini are capped (CONH-A6R-NH2, capA6R) or uncapped (NH2-A6R-OH, A6R). Lipid membranes are selected to correspond to model anionic membranes (POPE/POPG) resembling those in bacteria or model zwitterionic membranes (POPC/DOPC) similar to those found in mammalian cells. Viable antimicrobial agents should show activity against anionic membranes but not zwitterionic membranes. We find, using small-angle X-ray scattering (SAXS) and cryogenic-TEM (transmission electron microscopy) that, uniquely, capA6R causes structuring of anionic membranes due to the incorporation of the peptide in the lipid bilayer with peptide β-sheet conformation revealed by circular dichroism spectroscopy (CD). There is a preferential interaction of the peptide with POPG (which is the only anionic lipid in the systems studied) due to electrostatic interactions and bidentate hydrogen bonding between arginine guanidinium and lipid phosphate groups. At a certain composition, this peptide leads to the remarkable tubulation of zwitterionic phosphatidylcholine (PC) vesicles, which is ascribed to the interaction of the peptide with the outer lipid membrane, which occurs without penetration into the membrane. In contrast, peptide A6R has a minimal influence on the anionic lipid membranes (and no β-sheet peptide structure is observed) but causes thinning (lamellar decorrelation) of zwitterionic membranes. We also investigated the cytotoxicity (to fibroblasts) and antimicrobial activity of these two peptides against model Gram positive and Gram negative bacteria. A strong selective antimicrobial activity against Gram positive Listeria monocytogenes, which is an important food-borne pathogen, is observed for capA6R. Peptide A6R is active against all three studied bacteria. The activity of the peptides against bacteria and mammalian cells is related to the specific interactions uncovered through our SAXS, cryo-TEM, and CD measurements. Our results highlight the exquisite sensitivity to the charge distribution in these designed peptides and its effect on the interaction with lipid membranes bearing different charges, and ultimately on antimicrobial activity.
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Affiliation(s)
- Valeria Castelletto
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Ruth H Barnes
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Kimon-Andreas Karatzas
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Charlotte J C Edwards-Gayle
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Francesca Greco
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Ian W Hamley
- School of Chemistry, Food Biosciences and Pharmacy , University of Reading , Whiteknights , Reading RG6 6AD , United Kingdom
| | - Robert Rambo
- Diamond Light Source , Harwell Science and Innovation Campus , Didcot, Oxfordshire OX11 0DE , United Kingdom
| | - Jani Seitsonen
- Department of Applied Physics , Aalto School of Science , P.O. Box 15100, FI-00076 Aalto , Finland
| | - Janne Ruokolainen
- Department of Applied Physics , Aalto School of Science , P.O. Box 15100, FI-00076 Aalto , Finland
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83
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Xu S, Wang Y, Qi W, Su R, He Z. Design of Silica Nanostructures with Tunable Architectures Templated by Ferrocene Peptides. ChemistrySelect 2018. [DOI: 10.1002/slct.201800805] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Sheng Xu
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072, P. R. China
| | - Yuefei Wang
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072, P. R. China
- Tianjin Key Laboratory of Membrane Science and Desalination Technology; Tianjin University; Tianjin 300072, P. R. China
| | - Wei Qi
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072, P. R. China
- Collaborative Innovation Centre of Chemical Science and Engineering (Tianjin); Tianjin 300072, P. R. China
- Tianjin Key Laboratory of Membrane Science and Desalination Technology; Tianjin University; Tianjin 300072, P. R. China
| | - Rongxin Su
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072, P. R. China
- Collaborative Innovation Centre of Chemical Science and Engineering (Tianjin); Tianjin 300072, P. R. China
- Tianjin Key Laboratory of Membrane Science and Desalination Technology; Tianjin University; Tianjin 300072, P. R. China
| | - Zhimin He
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072, P. R. China
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84
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Interdisciplinary approach to develop a disposable real time monitoring tool for the cleaning of graphic artworks. Application on “le Nozze di Psiche”. Microchem J 2018. [DOI: 10.1016/j.microc.2018.01.022] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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85
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86
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Motoyama M, Vénien A, Loison O, Sandt C, Watanabe G, Sicard J, Sasaki K, Astruc T. In situ characterization of acidic and thermal protein denaturation by infrared microspectroscopy. Food Chem 2018; 248:322-329. [DOI: 10.1016/j.foodchem.2017.11.031] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Revised: 11/08/2017] [Accepted: 11/08/2017] [Indexed: 01/13/2023]
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87
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Brown N, Lei J, Zhan C, Shimon LJW, Adler-Abramovich L, Wei G, Gazit E. Structural Polymorphism in a Self-Assembled Tri-Aromatic Peptide System. ACS NANO 2018; 12:3253-3262. [PMID: 29558116 PMCID: PMC6333291 DOI: 10.1021/acsnano.7b07723] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Self-assembly is a process of key importance in natural systems and in nanotechnology. Peptides are attractive building blocks due to their relative facile synthesis, biocompatibility, and other unique properties. Diphenylalanine (FF) and its derivatives are known to form nanostructures of various architectures and interesting and varied characteristics. The larger triphenylalanine peptide (FFF) was found to self-assemble as efficiently as FF, forming related but distinct architectures of plate-like and spherical nanostructures. Here, to understand the effect of triaromatic systems on the self-assembly process, we examined carboxybenzyl-protected diphenylalanine (z-FF) as a minimal model for such an arrangement. We explored different self-assembly conditions by changing solvent compositions and peptide concentrations, generating a phase diagram for the assemblies. We discovered that z-FF can form a variety of structures, including nanowires, fibers, nanospheres, and nanotoroids, the latter were previously observed only in considerably larger or co-assembly systems. Secondary structure analysis revealed that all assemblies possessed a β-sheet conformation. Additionally, in solvent combinations with high water ratios, z-FF formed rigid and self-healing hydrogels. X-ray crystallography revealed a "wishbone" structure, in which z-FF dimers are linked by hydrogen bonds mediated by methanol molecules, with a 2-fold screw symmetry along the c-axis. All-atom molecular dynamics (MD) simulations revealed conformations similar to the crystal structure. Coarse-grained MD simulated the assembly of the peptide into either fibers or spheres in different solvent systems, consistent with the experimental results. This work thus expands the building block library for the fabrication of nanostructures by peptide self-assembly.
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Affiliation(s)
- Noam Brown
- Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
- Department of Chemical Physics, School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Jiangtao Lei
- Department of Physics, State Key Laboratory of Surface Physics, Key Laboratory for Computational Physical Sciences (MOE), and Collaborative Innovation Center of Advanced Microstructures (Nanjing), Fudan University, Shanghai 200433, People’s Republic of China
| | - Chendi Zhan
- Department of Physics, State Key Laboratory of Surface Physics, Key Laboratory for Computational Physical Sciences (MOE), and Collaborative Innovation Center of Advanced Microstructures (Nanjing), Fudan University, Shanghai 200433, People’s Republic of China
| | - Linda J. W. Shimon
- Department of Chemical Research Support, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Lihi Adler-Abramovich
- Department of Oral Biology, the Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel
| | - Guanghong Wei
- Department of Physics, State Key Laboratory of Surface Physics, Key Laboratory for Computational Physical Sciences (MOE), and Collaborative Innovation Center of Advanced Microstructures (Nanjing), Fudan University, Shanghai 200433, People’s Republic of China
- Corresponding Authors: .
| | - Ehud Gazit
- Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
- Corresponding Authors: .
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88
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Tsiolaki PL, Nasi GI, Baltoumas FA, Louros NN, Magafa V, Hamodrakas SJ, Iconomidou VA. αCGRP, another amyloidogenic member of the CGRP family. J Struct Biol 2018; 203:27-36. [PMID: 29501724 DOI: 10.1016/j.jsb.2018.02.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Revised: 01/26/2018] [Accepted: 02/28/2018] [Indexed: 10/17/2022]
Abstract
The Calcitonin-gene related peptide (CGRP) family is a group of peptide hormones, which consists of IAPP, calcitonin, adrenomedullin, intermedin, αCGRP and βCGRP. IAPP and calcitonin have been extensively associated with the formation of amyloid fibrils, causing Type 2 Diabetes and Medullary Thyroid Carcinoma, respectively. In contrast, the potential amyloidogenic properties of αCGRP still remain unexplored, although experimental trials have indicated its presence in deposits, associated with the aforementioned disorders. Therefore, in this work, we investigated the amyloidogenic profile of αCGRP, a 37-residue-long peptide hormone, utilizing both biophysical experimental techniques and Molecular Dynamics simulations. These efforts unravel a novel amyloidogenic member of the CGRP family and provide insights into the mechanism underlying the αCGRP polymerization.
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Affiliation(s)
- Paraskevi L Tsiolaki
- Section of Cell Biology and Biophysics, Department of Biology, School of Sciences, National and Kapodistrian University of Athens, Panepistimiopolis, Athens 157 01, Greece.
| | - Georgia I Nasi
- Section of Cell Biology and Biophysics, Department of Biology, School of Sciences, National and Kapodistrian University of Athens, Panepistimiopolis, Athens 157 01, Greece.
| | - Fotis A Baltoumas
- Section of Cell Biology and Biophysics, Department of Biology, School of Sciences, National and Kapodistrian University of Athens, Panepistimiopolis, Athens 157 01, Greece.
| | - Nikolaos N Louros
- Section of Cell Biology and Biophysics, Department of Biology, School of Sciences, National and Kapodistrian University of Athens, Panepistimiopolis, Athens 157 01, Greece.
| | - Vassiliki Magafa
- Department of Pharmacy, University of Patras, Patras 26504, Greece.
| | - Stavros J Hamodrakas
- Section of Cell Biology and Biophysics, Department of Biology, School of Sciences, National and Kapodistrian University of Athens, Panepistimiopolis, Athens 157 01, Greece.
| | - Vassiliki A Iconomidou
- Section of Cell Biology and Biophysics, Department of Biology, School of Sciences, National and Kapodistrian University of Athens, Panepistimiopolis, Athens 157 01, Greece.
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89
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Zhao Y, Yang W, Wang D, Wang J, Li Z, Hu X, King S, Rogers S, Lu JR, Xu H. Controlling the Diameters of Nanotubes Self-Assembled from Designed Peptide Bolaphiles. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2018; 14:e1703216. [PMID: 29430820 DOI: 10.1002/smll.201703216] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Revised: 12/26/2017] [Indexed: 05/22/2023]
Abstract
Controlling the diameters of nanotubes represents a major challenge in nanostructures self-assembled from templating molecules. Here, two series of bolaform hexapeptides are designed, with Set I consisting of Ac-KI4 K-NH2 , Ac-KI3 NleK-NH2 , Ac-KI3 LK-NH2 and Ac-KI3 TleK-NH2 , and Set II consisting of Ac-KI3 VK-NH2 , Ac-KI2 V2 K-NH2 , Ac-KIV3 K-NH2 and Ac-KV4 K-NH2 . In Set I, substitution for Ile in the C-terminal alters its side-chain branching, but the hydrophobicity is retained. In Set II, the substitution of Val for Ile leads to the decrease of hydrophobicity, but the side-chain β-branching is retained. The peptide bolaphiles tend to form long nanotubes, with the tube shell being composed of a peptide monolayer. Variation in core side-chain branching and hydrophobicity causes a steady shift of peptide nanotube diameters from more than one hundred to several nanometers, thereby achieving a reliable control over the underlying molecular self-assembling processes. Given the structural and functional roles of peptide tubes with varying dimensions in nature and in technological applications, this study exemplifies the predictive templating of nanostructures from short peptide self-assembly.
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Affiliation(s)
- Yurong Zhao
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), Changjiang West Road, Qingdao, 266580, China
| | - Wei Yang
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), Changjiang West Road, Qingdao, 266580, China
| | - Dong Wang
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), Changjiang West Road, Qingdao, 266580, China
| | - Jiqian Wang
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), Changjiang West Road, Qingdao, 266580, China
| | - Zongyi Li
- Biological Physics Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK
| | - Xuzhi Hu
- Biological Physics Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK
| | - Stephen King
- ISIS Pulsed Neutron Source, STFC Rutherford Appleton Laboratory, Didcot, Oxon, OX11 0QX, UK
| | - Sarah Rogers
- ISIS Pulsed Neutron Source, STFC Rutherford Appleton Laboratory, Didcot, Oxon, OX11 0QX, UK
| | - Jian R Lu
- Biological Physics Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK
| | - Hai Xu
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), Changjiang West Road, Qingdao, 266580, China
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90
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Bonnel C, Legrand B, Bantignies JL, Petitjean H, Martinez J, Masurier N, Maillard LT. FT-IR and NMR structural markers for thiazole-based γ-peptide foldamers. Org Biomol Chem 2018; 14:8664-8669. [PMID: 27714174 DOI: 10.1039/c6ob01594h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Nuclear magnetic resonance (NMR) spectroscopy has been established as a potent method for the determination of foldamer structures in solution. However, the NMR techniques could be limited by averaging, so additional experimental techniques are often needed to fully endorse the folding properties of a sequence. We have recently demonstrated that oligo-γ-peptides composed of 4-amino(methyl)-1,3-thiazole-5-carboxylic acids (ATCs) adopt an original helical fold stabilized by hydrogen bonds forming C9 pseudocycles. The main objective of the present work is to reinvestigate the folding of ATC oligomer 1 in order to identify reliable FT-IR and NMR structural markers that are of value for tracking the degree of organization of ATC-based peptides.
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Affiliation(s)
- C Bonnel
- Institut des Biomolécules Max Mousseron, UMR 5247, Université de Montpellier, CNRS, ENSCM, UFR des Sciences Pharmaceutiques et Biologiques, 15 Avenue Charles Flahault, 34093 Montpellier Cedex 5, France.
| | - B Legrand
- Institut des Biomolécules Max Mousseron, UMR 5247, Université de Montpellier, CNRS, ENSCM, UFR des Sciences Pharmaceutiques et Biologiques, 15 Avenue Charles Flahault, 34093 Montpellier Cedex 5, France.
| | - J-L Bantignies
- LC2 - UMR 5221 Université de Montpellier, CNRS, Place Eugène Bataillon, 34095 Montpellier, France
| | - H Petitjean
- Institut Charles Gerhardt, UMR 5253 CNRS/ENSCM/UM, Matériaux Avancés pour la Catalyse et la Santé, Ecole Nationale Supérieure de Chimie, 8 rue de l'Ecole Normale, 34296 Montpellier Cedex 5, France
| | - J Martinez
- Institut des Biomolécules Max Mousseron, UMR 5247, Université de Montpellier, CNRS, ENSCM, UFR des Sciences Pharmaceutiques et Biologiques, 15 Avenue Charles Flahault, 34093 Montpellier Cedex 5, France.
| | - N Masurier
- Institut des Biomolécules Max Mousseron, UMR 5247, Université de Montpellier, CNRS, ENSCM, UFR des Sciences Pharmaceutiques et Biologiques, 15 Avenue Charles Flahault, 34093 Montpellier Cedex 5, France.
| | - L T Maillard
- Institut des Biomolécules Max Mousseron, UMR 5247, Université de Montpellier, CNRS, ENSCM, UFR des Sciences Pharmaceutiques et Biologiques, 15 Avenue Charles Flahault, 34093 Montpellier Cedex 5, France.
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91
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Lupaescu AV, Jureschi M, Ciobanu CI, Ion L, Zbancioc G, Petre BA, Drochioiu G. FTIR and MS Evidence for Heavy Metal Binding to Anti-amyloidal NAP-Like Peptides. Int J Pept Res Ther 2018. [DOI: 10.1007/s10989-018-9672-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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92
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Methods to Characterize the Nanostructure and Molecular Organization of Amphiphilic Peptide Assemblies. Methods Mol Biol 2018; 1777:3-21. [PMID: 29744826 DOI: 10.1007/978-1-4939-7811-3_1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Methods to characterize the nanostructure and molecular organization of aggregates of peptides such as amyloid or amphiphilic peptide assemblies are reviewed. We discuss techniques to characterize conformation and secondary structure including circular and linear dichroism and FTIR and Raman spectroscopies, as well as fluorescence methods to detect aggregation. NMR spectroscopy methods, especially solid-state NMR measurements to probe beta-sheet packing motifs, are also briefly outlined. Also discussed are scattering methods including X-ray diffraction and small-angle scattering techniques including SAXS (small-angle X-ray scattering) and SANS (small-angle neutron scattering) and dynamic light scattering. Imaging methods are direct methods to uncover features of peptide nanostructures, and we provide a summary of electron microscopy and atomic force microscopy techniques. Selected examples are highlighted showing data obtained using these techniques, which provide a powerful suite of methods to probe ordering from the molecular scale to the aggregate superstructure.
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93
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Elmi F, Movaghar AF, Elmi MM, Alinezhad H, Nikbakhsh N. Application of FT-IR spectroscopy on breast cancer serum analysis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 187:87-91. [PMID: 28666157 DOI: 10.1016/j.saa.2017.06.021] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2016] [Revised: 06/14/2017] [Accepted: 06/15/2017] [Indexed: 06/07/2023]
Abstract
Breast cancer is regarded as the most malignant tumor among women throughout the world. Therefore, early detection and proper diagnostic methods have been known to help save women's lives. Fourier Transform Infrared (FT-IR) spectroscopy, coupled with PCA-LDA analysis, is a new technique to investigate the characteristics of serum in breast cancer. In this study, 43 breast cancer and 43 healthy serum samples were collected, and the FT-IR spectra were recorded for each one. Then, PCA analysis and linear discriminant analysis (LDA) were used to analyze the spectral data. The results showed that there were differences between the spectra of the two groups. Discriminating wavenumbers were associated with several spectral differences over the 950-1200cm-1(sugar), 1190-1350cm-1 (collagen), 1475-1710cm-1 (protein), 1710-1760cm-1 (ester), 2800-3000cm-1 (stretching motions of -CH2 & -CH3), and 3090-3700cm-1 (NH stretching) regions. PCA-LDA performance on serum IR could recognize changes between the control and the breast cancer cases. The diagnostic accuracy, sensitivity, and specificity of PCA-LDA analysis for 3000-3600cm-1 (NH stretching) were found to be 83%, 84%, 74% for the control and 80%, 76%, 72% for the breast cancer cases, respectively. The results showed that the major spectral differences between the two groups were related to the differences in protein conformation in serum samples. It can be concluded that FT-IR spectroscopy, together with multivariate data analysis, is able to discriminate between breast cancer and healthy serum samples.
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Affiliation(s)
- Fatemeh Elmi
- Department of Marine Chemistry, Faculty of Marine & Oceanic Science, University of Mazandaran, Babolsar, Iran.
| | - Afshin Fayyaz Movaghar
- Department of Statistics, Faculty of Mathematical Sciences, University of Mazandaran, Babolsar, Iran.
| | - Maryam Mitra Elmi
- Cellular and Molecular Biology Research Center, Health Research Institute, Babol University of Medical Sciences, Babol, Iran.
| | - Heshmatollah Alinezhad
- Department of Chemistry, Faculty of Organic Chemistry, University of Mazandaran, Babolsar, Iran.
| | - Novin Nikbakhsh
- Surgery Department, Faculty of Medicine, Babol University of Medical Sciences, Babol, Iran.
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94
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Cao M, Lu S, Zhao W, Deng L, Wang M, Wang J, Zhou P, Wang D, Xu H, Lu JR. Peptide Self-Assembled Nanostructures with Distinct Morphologies and Properties Fabricated by Molecular Design. ACS APPLIED MATERIALS & INTERFACES 2017; 9:39174-39184. [PMID: 29067798 DOI: 10.1021/acsami.7b11681] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Six surfactant-like peptides with the same amino acid composition but different primary sequences are designed, including G3A3V3I3K3, K3I3V3A3G3, I3V3A3G3K3, K3G3A3V3I3, V3G3I3A3K3, and K3A3I3G3V3. These peptides form antiparallel β-sheets during self-assembly. Because the constituent residues have different side chain size and hydrophobicity, sequence changes adjust group distribution and hydrophobicity on the two sides of a given β-sheet. This consequently tunes the binding energy of the side-to-side pairing conformations and leads to different self-assembled structures. G3A3V3I3K3 and K3I3V3A3G3 form short nanorods with diameters of 8.5 ± 1.0 nm and lengths <150 nm. I3V3A3G3K3 and K3G3A3V3I3 form nanosheets with heights of 4.0 ± 0.5 nm and limited lengths and widths. V3G3I3A3K3 and K3A3I3G3V3 form long fibrils with diameters of 7.0 ± 1.0 nm and lengths of micrometer scale. These nanostructures exhibit different capacity in encapsulating insoluble hydrophobic drug molecules and delivering them into the cells. The nanosheets of I3V3A3G3K3 and K3G3A3V3I3 can encapsulate both nile red and doxorubicin molecules to an extent of up to 17-23% in mole ratio. Moreover, the shape and size of the nanostructures affect the drug delivery into cells greatly, with the nanosheets and short rods exhibiting higher efficiency than the long fibrils. The study provides new insights into programmed peptide self-assembly toward specific functionalities.
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Affiliation(s)
- Meiwen Cao
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Sha Lu
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Wenjing Zhao
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Li Deng
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Meng Wang
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Jiqian Wang
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Peng Zhou
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Dong Wang
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Hai Xu
- State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China) , 66 Changjiang West Road, Qingdao 266580, China
| | - Jian R Lu
- Biological Physics Laboratory, School of Physics and Astronomy, University of Manchester , Schuster Building, Oxford Road, Manchester M13 9PL, U.K
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95
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Fabbiani M, Rebba E, Pazzi M, Vincenti M, Fois E, Martra G. Solvent-free synthesis of Ser–His dipeptide from non-activated amino acids and its potential function as organocatalyst. RESEARCH ON CHEMICAL INTERMEDIATES 2017. [DOI: 10.1007/s11164-017-3198-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Peptides as Bio-inspired Molecular Electronic Materials. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2017. [PMID: 29081052 DOI: 10.1007/978-3-319-66095-0_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register]
Abstract
Understanding the electronic properties of single peptides is not only of fundamental importance to biology, but it is also pivotal to the realization of bio-inspired molecular electronic materials. Natural proteins have evolved to promote electron transfer in many crucial biological processes. However, their complex conformational nature inhibits a thorough investigation, so in order to study electron transfer in proteins, simple peptide models containing redox active moieties present as ideal candidates. Here we highlight the importance of secondary structure characteristic to proteins/peptides, and its relevance to electron transfer. The proposed mechanisms responsible for such transfer are discussed, as are details of the electrochemical techniques used to investigate their electronic properties. Several factors that have been shown to influence electron transfer in peptides are also considered. Finally, a comprehensive experimental and theoretical study demonstrates that the electron transfer kinetics of peptides can be successfully fine tuned through manipulation of chemical composition and backbone rigidity. The methods used to characterize the conformation of all peptides synthesized throughout the study are outlined, along with the various approaches used to further constrain the peptides into their geometric conformations. The aforementioned sheds light on the potential of peptides to one day play an important role in the fledgling field of molecular electronics.
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97
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Chai Q, Wei J, Bai B, Wang H, Li M. A Photo-Responsive Organogel Based on Pyrene-Substituted Acylhydrazone Derivative. CHINESE J CHEM 2017. [DOI: 10.1002/cjoc.201700388] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Qing Chai
- Key Laboratory of Coherent Light and Atomic and Molecular Spectroscopy of Ministry of Education, College of Physics, Jilin University; Changchun, Jilin 130012 China
| | - Jue Wei
- Key Laboratory of Coherent Light and Atomic and Molecular Spectroscopy of Ministry of Education, College of Physics, Jilin University; Changchun, Jilin 130012 China
| | - Binglian Bai
- Key Laboratory of Coherent Light and Atomic and Molecular Spectroscopy of Ministry of Education, College of Physics, Jilin University; Changchun, Jilin 130012 China
| | - Haitao Wang
- Key Laboratory for Automobile Materials (JLU), Ministry of Education, College of Materials Science and Engineering, Jilin University; Changchun, Jilin 130012 China
| | - Min Li
- Key Laboratory for Automobile Materials (JLU), Ministry of Education, College of Materials Science and Engineering, Jilin University; Changchun, Jilin 130012 China
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Tayeb-Fligelman E, Tabachnikov O, Moshe A, Goldshmidt-Tran O, Sawaya MR, Coquelle N, Colletier JP, Landau M. The cytotoxic Staphylococcus aureus PSMα3 reveals a cross-α amyloid-like fibril. Science 2017; 355:831-833. [PMID: 28232575 DOI: 10.1126/science.aaf4901] [Citation(s) in RCA: 214] [Impact Index Per Article: 30.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Revised: 12/23/2016] [Accepted: 02/02/2017] [Indexed: 12/31/2022]
Abstract
Amyloids are ordered protein aggregates, found in all kingdoms of life, and are involved in aggregation diseases as well as in physiological activities. In microbes, functional amyloids are often key virulence determinants, yet the structural basis for their activity remains elusive. We determined the fibril structure and function of the highly toxic, 22-residue phenol-soluble modulin α3 (PSMα3) peptide secreted by Staphylococcus aureus PSMα3 formed elongated fibrils that shared the morphological and tinctorial characteristics of canonical cross-β eukaryotic amyloids. However, the crystal structure of full-length PSMα3, solved de novo at 1.45 angstrom resolution, revealed a distinctive "cross-α" amyloid-like architecture, in which amphipathic α helices stacked perpendicular to the fibril axis into tight self-associating sheets. The cross-α fibrillation of PSMα3 facilitated cytotoxicity, suggesting that this assembly mode underlies function in S. aureus.
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Affiliation(s)
- Einav Tayeb-Fligelman
- Department of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel
| | - Orly Tabachnikov
- Department of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel
| | - Asher Moshe
- Department of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel
| | - Orit Goldshmidt-Tran
- Department of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel
| | - Michael R Sawaya
- Department of Biological Chemistry, Department of Chemistry and Biochemistry, and Howard Hughes Medical Institute, University of California at Los Angeles, Los Angeles, CA 90095, USA
| | - Nicolas Coquelle
- Institut de Biologie Structurale (IBS), Université Grenoble Alpes-CEA-CNRS UMR 5075, Grenoble 38044, France
| | - Jacques-Philippe Colletier
- Institut de Biologie Structurale (IBS), Université Grenoble Alpes-CEA-CNRS UMR 5075, Grenoble 38044, France
| | - Meytal Landau
- Department of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel.
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99
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The Semi-Synthetic Peptide Lin-SB056-1 in Combination with EDTA Exerts Strong Antimicrobial and Antibiofilm Activity against Pseudomonas aeruginosa in Conditions Mimicking Cystic Fibrosis Sputum. Int J Mol Sci 2017; 18:ijms18091994. [PMID: 28926942 PMCID: PMC5618643 DOI: 10.3390/ijms18091994] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2017] [Revised: 09/07/2017] [Accepted: 09/13/2017] [Indexed: 12/23/2022] Open
Abstract
Pseudomonas aeruginosa is a major cause of chronic lung infections in cystic fibrosis (CF) patients. The ability of the bacterium to form biofilms and the presence of a thick and stagnant mucus in the airways of CF patients largely contribute to antibiotic therapy failure and demand for new antimicrobial agents able to act in the CF environment. The present study investigated the anti-P. aeruginosa activity of lin-SB056-1, a recently described semi-synthetic antimicrobial peptide, used alone and in combination with the cation chelator ethylenediaminetetraacetic acid (EDTA). Bactericidal assays were carried out in standard culture conditions and in an artificial sputum medium (ASM) closely resembling the CF environment. Peptide’s structure and interaction with large unilamellar vesicles in media with different ionic strengths were also investigated through infrared spectroscopy. Lin-SB056-1 demonstrated fast and strong bactericidal activity against both mucoid and non-mucoid strains of P. aeruginosa in planktonic form and, in combination with EDTA, caused significant reduction of the biomass of P. aeruginosa mature biofilms. In ASM, the peptide/EDTA combination exerted a strong bactericidal effect and inhibited the formation of biofilm-like structures of P. aeruginosa. Overall, the results obtained highlight the potential of the lin-SB056-1/EDTA combination for the treatment of P. aeruginosa lung infections in CF patients.
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100
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Caetano-Silva ME, Alves RC, Lucena GN, Frem RCG, Bertoldo-Pacheco MT, Lima-Pallone JA, Netto FM. Synthesis of whey peptide-iron complexes: Influence of using different iron precursor compounds. Food Res Int 2017; 101:73-81. [PMID: 28941699 DOI: 10.1016/j.foodres.2017.08.056] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Revised: 08/11/2017] [Accepted: 08/25/2017] [Indexed: 10/18/2022]
Abstract
Iron-binding peptides are an alternative for increasing the bioavailability of iron and to decreasing its pro-oxidant effect. This study aimed to synthesize and characterize peptide-iron complexes using FeCl2 or FeSO4 as the iron precursor compounds. Whey protein isolate (WPI), WPI hydrolyzed with pancreatin, and its fractions obtained via ultrafiltration (cut-off 5kDa) were used as ligands. The fluorescence intensity of the ligands significantly decreased as the iron concentration increased as a result of metal coordination with the iron-binding sites, which may have led to changes in the microenvironment of tryptophan. For both iron precursor compounds, the primary iron-binding site was carboxylate groups, and the linkage occurred via a bidentate coordination mode with two vibrational modes assigned to the COOFe linkage. However, infrared spectroscopy and thermal analysis results showed that the dynamics of the interaction is different for the iron precursor. The iron source may be of great importance because it may impact iron absorption and the pro-oxidant effect of the mineral.
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Affiliation(s)
- Maria Elisa Caetano-Silva
- Faculty of Food Engineering, University of Campinas, UNICAMP, Monteiro Lobato 80, 13083-862 Campinas, SP, Brazil.
| | - Renata Carolina Alves
- Institute of Chemistry, São Paulo State University, UNESP, Prof. Francisco Degni 55, PO Box 355, 14800-970 Araraquara, SP, Brazil.
| | - Guilherme Nunes Lucena
- Institute of Chemistry, São Paulo State University, UNESP, Prof. Francisco Degni 55, PO Box 355, 14800-970 Araraquara, SP, Brazil.
| | - Regina Célia Galvão Frem
- Institute of Chemistry, São Paulo State University, UNESP, Prof. Francisco Degni 55, PO Box 355, 14800-970 Araraquara, SP, Brazil.
| | - Maria Teresa Bertoldo-Pacheco
- Center of Food Science and Quality, Institute of Food Technology, ITAL, Brasil Ave 2880, 13070-178 Campinas, SP, Brazil.
| | - Juliana Azevedo Lima-Pallone
- Faculty of Food Engineering, University of Campinas, UNICAMP, Monteiro Lobato 80, 13083-862 Campinas, SP, Brazil.
| | - Flavia Maria Netto
- Faculty of Food Engineering, University of Campinas, UNICAMP, Monteiro Lobato 80, 13083-862 Campinas, SP, Brazil.
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