Role of scale and environmental factors in regulation of community structure

Scaling disturbance instead of richness to better understand anthropogenic impacts on biodiversity

A primary impediment to understanding how species diversity and anthropogenic disturbance are related is that both diversity and disturbance can depend on the scales at which they are sampled. While the scale dependence of diversity estimation has received substantial attention, the scale dependence of disturbance estimation has been essentially overlooked. Here, we break from conventional examination of the diversity-disturbance relationship by holding the area over which species richness is estimated constant and instead manipulating the area over which human disturbance is measured. In the boreal forest ecoregion of Alberta, Canada, we test the dependence of species richness on disturbance scale, the scale-dependence of the intermediate disturbance hypothesis, and the consistency of these patterns in native versus exotic species and among human disturbance types. We related field observed species richness in 1 ha surveys of 372 boreal vascular plant communities to remotely sensed measures of human disturbance extent at two survey scales: local (1 ha) and landscape (18 km2). Supporting the intermediate disturbance hypothesis, species richness-disturbance relationships were quadratic at both local and landscape scales of disturbance measurement. This suggests the shape of richness-disturbance relationships is independent of the scale at which disturbance is assessed, despite that local diversity is influenced by disturbance at different scales by different mechanisms, such as direct removal of individuals (local) or indirect alteration of propagule supply (landscape). By contrast, predictions of species richness did depend on scale of disturbance measurement: with high local disturbance richness was double that under high landscape disturbance.

Testing the influence of environmental heterogeneity on fish species richness in two biogeographic provinces

Environmental homogenization in coastal ecosystems impacted by human activities may be an important factor explaining the observed decline in fish species richness. We used fish community data (>200 species) from extensive surveys conducted in two biogeographic provinces (extent >1,000 km) in North America to quantify the relationship between fish species richness and local (grain <10 km²) environmental heterogeneity. Our analyses are based on samples collected at nearly 800 stations over a period of five years. We demonstrate that fish species richness in coastal ecosystems is associated locally with the spatial heterogeneity of environmental variables but not with their magnitude. The observed effect of heterogeneity on species richness was substantially greater than that generated by simulations from a random placement model of community assembly, indicating that the observed relationship is unlikely to arise from veil or sampling effects. Our results suggest that restoring or actively protecting areas of high habitat heterogeneity may be of great importance for slowing current trends of decreasing biodiversity in coastal ecosystems.

Patterns of host and flea communities along an elevational gradient in Colorado

Patterns in community composition across a landscape are the result of mechanistic responses and species interactions. Interactions between hosts and parasites have additional complexity because of the contingency of host presence and interactions among parasites. To assess the role of environmental changes within host and parasite communities, we surveyed small mammals and their fleas over a dynamic elevational gradient in the Front Range in Colorado, USA. Communities were characterized using several richness and diversity metrics and these were compared using a suite of frequentist and randomization approaches. We found that flea species richness was related to the number of host species based upon rarefaction, but no patterns in richness with elevation were evident. Values of diversity measures increased with elevation, representing that small-mammal and flea communities were more even upslope, yet turnover in composition was not related to examined variables. The results suggest there are strong local effects that drive these small-mammal and flea communities, although the breadth of flea species is tied to host availability.

Ontogeny influences sensitivity to climate change stressors in an endangered fish

Coastal ecosystems are among the most human-impacted habitats globally, and their management is often critically linked to recovery of declining native species. In the San Francisco Estuary, the Delta Smelt (Hypomesus transpacificus) is an endemic, endangered fish strongly tied to Californian conservation planning. The complex life history of Delta Smelt combined with dynamic seasonal and spatial abiotic conditions result in dissimilar environments experienced among ontogenetic stages, which may yield stage-specific susceptibility to abiotic stressors. Climate change is forecasted to increase San Francisco Estuary water temperature and salinity; therefore, understanding the influences of ontogeny and phenotypic plasticity on tolerance to these critical environmental parameters is particularly important for Delta Smelt and other San Francisco Estuary fishes. We assessed thermal and salinity limits in several ontogenetic stages and acclimation states of Delta Smelt, and paired these data with environmental data to evaluate sensitivity to climate-change stressors. Thermal tolerance decreased among successive stages, with larval fish exhibiting the highest tolerance and post-spawning adults having the lowest. Delta Smelt had limited capacity to increase tolerance through thermal acclimation, and comparisons with field temperature data revealed that juvenile tolerance limits are the closest to current environmental conditions, which may make this stage especially susceptible to future climate warming. Maximal water temperatures observed in situ exceeded tolerance limits of juveniles and adults. Although these temperature events are currently rare, if they increase in frequency as predicted, it could result in habitat loss at these locations despite other favourable conditions for Delta Smelt. In contrast, Delta Smelt tolerated salinities spanning the range of expected environmental conditions for each ontogenetic stage, but salinity did impact survival in juvenile and adult stages in exposures over acute time scales. Our results underscore the importance of considering ontogeny and phenotypic plasticity in assessing the impacts of climate change, particularly for species adapted to spatially and temporally heterogeneous environments.

Between tide and wave marks: a unifying model of physical zonation on littoral shores

The effects of tides on littoral marine habitats are so ubiquitous that shorelines are commonly described as ‘intertidal’, whereas waves are considered a secondary factor that simply modifies the intertidal habitat. However mean significant wave height exceeds tidal range at many locations worldwide. Here we construct a simple sinusoidal model of coastal water level based on both tidal range and wave height. From the patterns of emergence and submergence predicted by the model, we derive four vertical shoreline benchmarks which bracket up to three novel, spatially distinct, and physically defined zones. The (1) emergent tidal zone is characterized by tidally driven emergence in air; the (2) wave zone is characterized by constant (not periodic) wave wash; and the (3) submergent tidal zone is characterized by tidally driven submergence. The decoupling of tidally driven emergence and submergence made possible by wave action is a critical prediction of the model. On wave-dominated shores (wave height ≫ tidal range), all three zones are predicted to exist separately, but on tide-dominated shores (tidal range ≫ wave height) the wave zone is absent and the emergent and submergent tidal zones overlap substantially, forming the traditional “intertidal zone”. We conclude by incorporating time and space in the model to illustrate variability in the physical conditions and zonation on littoral shores. The wave:tide physical zonation model is a unifying framework that can facilitate our understanding of physical conditions on littoral shores whether tropical or temperate, marine or lentic.

Linking ecomechanics and ecophysiology to interspecific interactions and community dynamics

To predict community-level responses to climate change, we must understand how variation in environmental conditions drives changes in an organism's ability to acquire resources and translate those resources into growth, reproduction, and survival. This challenge can be approached mechanistically by establishing linkages from biophysics to community ecology. For example, body temperature can be predicted from environmental conditions and species-specific morphological and behavioral traits. Variation in body temperature within and among species dictates physiological performance, rates of resource acquisition, and growth. These ecological characteristics, along with population size, define the strength with which species interact. Finally, the direct (individual level) and indirect (community level) effects of temperature jointly determine community structure. This mechanistic framework can complement correlational approaches to better predict ecological responses to climate change and identify which characteristics of a species or community act as leverage points for change. Research priorities for further development of the mechanistic approach include documentation and prediction of relevant spatial and temporal variation in body temperature and the relationships between body temperature, individual performance, and interspecific interactions.

Environmental and ecological changes associated with a marina

Anthropogenic modifications to waterways are common and their ecological consequences must be understood to effectively conserve local biodiversity. The facilitation of recreational boating activities often requires substantial alteration of natural areas, however the environmental and ecological consequences of such alterations are rarely described in the scientific literature. In this study, ecological and physico-chemical conditions were investigated in a recreational boating marina, located inside a marine park on the south-east coast of Australia. Recruitment panels were deployed for 8 weeks both inside and outside the marina, and differences in the composition of the developing fouling communities were observed. The recruitment of taxa, which often have short-lived larvae, was increased inside the marina (bryozoans, spirorbids and sponges) while the recruitment of taxa, which often have longer-lived larvae, was reduced or absent (barnacles, solitary ascidians and non-spirorbid polychaetes). Differences were also observed in environmental conditions inside the marina cf. directly outside. The marina environment had higher turbidity, temperature and pH along with higher concentrations of lead and copper in suspended sediments, while flow rates and trapped sediment loads were reduced inside the marina. The differences observed in the study suggest that there may be marked environmental changes associated with marina developments. The potential ecological consequences of these changes should be a primary consideration during the planning process, particularly for developments in locations of notable ecological value.

A comparison of the seasonal movements of tiger sharks and green turtles provides insight into their predator-prey relationship

During the reproductive season, sea turtles use a restricted area in the vicinity of their nesting beaches, making them vulnerable to predation. At Raine Island (Australia), the highest density green turtle Chelonia mydas rookery in the world, tiger sharks Galeocerdo cuvier have been observed to feed on green turtles, and it has been suggested that they may specialise on such air-breathing prey. However there is little information with which to examine this hypothesis. We compared the spatial and temporal components of movement behaviour of these two potentially interacting species in order to provide insight into the predator-prey relationship. Specifically, we tested the hypothesis that tiger shark movements are more concentrated at Raine Island during the green turtle nesting season than outside the turtle nesting season when turtles are not concentrated at Raine Island. Turtles showed area-restricted search behaviour around Raine Island for ∼3–4 months during the nesting period (November–February). This was followed by direct movement (transit) to putative foraging grounds mostly in the Torres Straight where they switched to area-restricted search mode again, and remained resident for the remainder of the deployment (53–304 days). In contrast, tiger sharks displayed high spatial and temporal variation in movement behaviour which was not closely linked to the movement behaviour of green turtles or recognised turtle foraging grounds. On average, tiger sharks were concentrated around Raine Island throughout the year. While information on diet is required to determine whether tiger sharks are turtle specialists our results support the hypothesis that they target this predictable and plentiful prey during turtle nesting season, but they might not focus on this less predictable food source outside the nesting season.

Anthropogenic influences on macro-level mammal occupancy in the Appalachian Trail corridor

Anthropogenic effects on wildlife are typically assessed at the local level, but it is often difficult to extrapolate to larger spatial extents. Macro-level occupancy studies are one way to assess impacts of multiple disturbance factors that might vary over different geographic extents. Here we assess anthropogenic effects on occupancy and distribution for several mammal species within the Appalachian Trail (AT), a forest corridor that extends across a broad section of the eastern United States. Utilizing camera traps and a large volunteer network of citizen scientists, we were able to sample 447 sites along a 1024 km section of the AT to assess the effects of available habitat, hunting, recreation, and roads on eight mammal species. Occupancy modeling revealed the importance of available forest to all species except opossums (Didelphis virginiana) and coyotes (Canis latrans). Hunting on adjoining lands was the second strongest predictor of occupancy for three mammal species, negatively influencing black bears (Ursus americanus) and bobcats (Lynx rufus), while positively influencing raccoons (Procyon lotor). Modeling also indicated an avoidance of high trail use areas by bears and proclivity towards high use areas by red fox (Vulpes vulpes). Roads had the lowest predictive power on species occupancy within the corridor and were only significant for deer. The occupancy models stress the importance of compounding direct and indirect anthropogenic influences operating at the regional level. Scientists and managers should consider these human impacts and their potential combined influence on wildlife persistence when assessing optimal habitat or considering management actions.

Wave disturbance overwhelms top-down and bottom-up control of primary production in California kelp forests

We took advantage of regional differences in environmental forcing and consumer abundance to examine the relative importance of nutrient availability (bottom-up), grazing pressure (top-down), and storm waves (disturbance) in determining the standing biomass and net primary production (NPP) of the giant kelp Macrocystis pyrifera in central and southern California. Using a nine-year data set collected from 17 sites we show that, despite high densities of sea urchin grazers and prolonged periods of low nutrient availability in southern California, NPP by giant kelp was twice that of central California where nutrient concentrations were consistently high and sea urchins were nearly absent due to predation by sea otters. Waves associated with winter storms were consistently higher in central California, and the loss of kelp biomass to winter wave disturbance was on average twice that of southern California. These observations suggest that the more intense wave disturbance in central California limited NPP by giant kelp under otherwise favorable conditions. Regional patterns of interannual variation in NPP were similar to those of wave disturbance in that year-to-year variation in disturbance and NPP were both greater in southern California. Our findings provide strong evidence that regional differences in wave disturbance overwhelmed those of nutrient supply and grazing intensity to determine NPP by giant kelp. The important role of disturbance in controlling NPP revealed by our study is likely not unique to giant kelp forests, as vegetation dynamics in many systems are dominated by post-disturbance succession with climax communities being relatively uncommon. The effects of disturbance frequency may be easier to detect in giant kelp because it is fast growing and relatively short lived, with cycles of disturbance and recovery occurring on time scales of years. Much longer data sets (decades to centuries) will likely be needed to properly evaluate the role of disturbance relative to other processes in determining patterns of NPP in other systems.

In situ measures of foraging success and prey encounter reveal marine habitat-dependent search strategies

Predators are thought to reduce travel speed and increase turning rate in areas where resources are relatively more abundant, a behavior termed "area-restricted search." However, evidence for this is rare, and few empirical data exist for large predators. Animals exhibiting foraging site fidelity could also be spatially aware of suitable feeding areas based on prior experience; changes in movement patterns might therefore arise from the anticipation of higher prey density. We tested the hypothesis that regions of area-restricted search were associated with a higher number of daily speed spikes (a proxy for potential prey encounter rate) and foraging success in southern elephant seals (Mirounga leonina), a species exhibiting both area-restricted searches and high interannual foraging site fidelity. We used onshore morphological measurements and diving data from archival tags deployed during winter foraging trips. Foraging success was inferred from in situ changes in relative lipid content derived from measured changes in buoyancy, and first-passage time analysis was used to identify area-restricted search behavior. Seals exhibited relatively direct southerly movement on average, with intensive search behavior predominantly located at the distal end of tracks. The probability of being in search mode was positively related to changes in relative lipid content; thus, intensively searched areas were associated with the highest foraging success. However, there was high foraging success during the outward transit even though seals moved through quickly without slowing down and increasing turning rate to exploit these areas. In addition, the probability of being in search mode was negatively related to the number of daily speed spikes. These results suggest that movement patterns represent a response to prior expectation of the location of predictable and profitable resources. Shelf habitat was 4-9 times more profitable than the other habitats, emphasizing the importance of the East Antarctic shelf for this and other predators in the region. We have provided rare empirical data with which to investigate the relationship between predator foraging strategy and prey encounter/ foraging success, underlining the importance of inferring the timing and spatial arrangement of successful food acquisition for interpreting foraging strategies correctly.

Estimation of nested spatial patterns and seasonal variation in the longitudinal distribution of Sicyopterus japonicus in the Datuan Stream, Taiwan by using geostatistical methods

This study attempts to determine the scale-dependent hierarchical spatial variation and longitudinal distributions of Sicyopterus japonicus year round. The distribution of S. japonicus in the Datuan Stream in northern Taiwan was surveyed during the fall and winter 2007, as well as the spring and summer of 2008. The spatial structure of S. japonicus density was modeled using geostatistics. The longitudinal distributions of S. japonicus density were then estimated using kriging and hydrology distance with nested variogram models. Variography results indicate that nested variogram models could reflect the hierarchical structure in the spatial variation of seasonal S. japonicus density, with the small, median, and large ranges representing three nested scales. Models for the four seasons were consistent in that they shared the same shape of variogram models with various ranges and sill values. This model shape consistency implies stationary spatial correlations in the longitudinal fish distribution across the four seasons. The Kriging geostatistical method based on the multiple scales nested variogram models also provided robust estimates of S. japonicus densities at unsampled sections. We conclude that S. japonicus densities exhibit hierarchical patterns and variation in the four seasons along the study stream. Geostatistical methods with a nested variograms and hydrological distance are a highly effective means of delineating the hierarchical structure in longitudinal patterns of S. japonicus density in each season, providing estimates of the S. japonicus density for hierarchically structured spatial distributions and expanding knowledge of S. japonicus beyond the limits imposed by spatial and temporal scales.

Rodent community structure and Andes virus infection in sylvan and peridomestic habitats in northwestern Patagonia, Argentina

Modifications of natural habitat in peridomestic rural areas could affect original rodent community composition, diversity, and evenness. In zoonoses such as hantavirus pulmonary syndrome, the presence of a diverse community can dilute the impact of the principal reservoir, reducing risk to humans. The goal of this study was to examine rodent community composition, abundance of Andes virus (ANDV) host (Oligoryzomys longicaudatus), ANDV prevalence, and temporal variability associated with rural peridomestic settings in Patagonia, Argentina. We trapped rodents in peridomestic settings and nearby sylvan areas for 2 years. The numerically dominant species differed between peridomestic and sylvan settings. O. longicaudatus was the most abundant species in peridomestic settings (>50% of individuals). Diversity and evenness in peridomestic settings fluctuated temporally, with an abrupt decline in evenness coinciding with peaks in ANDV prevalence. The probability of finding an ANDV-positive mouse in peridomestic settings was 2.44 times greater than in sylvan habitats. Changes in rodent communities in peridomestic settings may increase the probability for human exposure to ANDV because those settings promote the presence of O. longicaudatus with high ANDV antibody prevalence. High O. longicaudatus relative abundance in an unstable community associated with peridomestic settings may favor intraspecific contact, leading to a higher probability of virus transmission.

Tipping points, thresholds and the keystone role of physiology in marine climate change research

The ongoing and future effects of global climate change on natural and human-managed ecosystems have led to a renewed interest in the concept of ecological thresholds or tipping points. While generalizations such as poleward range shifts serve as a useful heuristic framework to understand the overall ecological impacts of climate change, sophisticated approaches to management require spatially and temporally explicit predictions that move beyond these oversimplified models. Most approaches to studying ecological thresholds in marine ecosystems tend to focus on populations, or on non-linearities in physical drivers. Here we argue that many of the observed thresholds observed at community and ecosystem levels can potentially be explained as the product of non-linearities that occur at three scales: (a) the mechanisms by which individual organisms interact with their ambient habitat, (b) the non-linear relationship between organismal physiological performance and variables such as body temperature and (c) the indirect effects of physiological stress on species interactions such as competition and predation. We explore examples at each of these scales in detail and explain why a failure to consider these non-linearities - many of which can be counterintuitive - can lead to Type II errors (a failure to predict significant ecological responses to climate change). Specifically, we examine why ecological thresholds can occur well before concomitant thresholds in physical drivers are observed, i.e. how even small linear changes in the physical environment can lead to ecological tipping points. We advocate for an integrated framework that combines biophysical, ecological and physiological methods to generate hypotheses that can be tested using experimental manipulation as well as hindcasting and nowcasting of observed change, on a spatially and temporally explicit basis.

Population genetics of a trochid gastropod broadens picture of Caribbean Sea connectivity

Background

Regional genetic connectivity models are critical for successful conservation and management of marine species. Even though rocky shore invertebrates have been used as model systems to understand genetic structure in some marine environments, our understanding of connectivity in Caribbean communities is based overwhelmingly on studies of tropical fishes and corals. In this study, we investigate population connectivity and diversity of Cittarium pica, an abundant rocky shore trochid gastropod that is commercially harvested across its natural range, from the Bahamas to Venezuela.

Methodology/Principal Findings

We tested for genetic structure using DNA sequence variation at the mitochondrial COI and 16S loci, AMOVA and distance-based methods. We found substantial differentiation among Caribbean sites. Yet, genetic differentiation was associated only with larger geographic scales within the Caribbean, and the pattern of differentiation only partially matched previous assessments of Caribbean connectivity, including those based on larval dispersal from hydrodynamic models. For instance, the Bahamas, considered an independent region by previous hydrodynamic studies, showed strong association with Eastern Caribbean sites in our study. Further, Bonaire (located in the east and close to the meridional division of the Caribbean basin) seems to be isolated from other Eastern sites.

Conclusions/Significance

The significant genetic structure and observed in C. pica has some commonalities in pattern with more commonly sampled taxa, but presents features, such as the differentiation of Bonaire, that appear unique. Further, the level of differentiation, together with regional patterns of diversity, has important implications for the application of conservation and management strategies in this commercially harvested species.

Biotic resistance to invasion along an estuarine gradient

Biotic resistance is the ability of native communities to repel the establishment of invasive species. Predation by native species may confer biotic resistance to communities, but the environmental context under which this form of biotic resistance occurs is not well understood. We evaluated several factors that influence the distribution of invasive Asian mussels (Musculista senhousia) in Mission Bay, a southern California estuary containing an extensive eelgrass (Zostera marina) habitat. Asian mussels exhibit a distinct spatial pattern of invasion, with extremely high densities towards the back of Mission Bay (up to 4,000 m⁻²) in contrast with near-complete absence at sites towards the front of the bay. We established that recruits arrived at sites where adult mussels were absent and found that dense eelgrass does not appear to preclude Asian mussel growth and survival. Mussel survival and growth were high in predator-exclusion plots throughout the bay, but mussel survival was low in the front of the bay when plots were open to predators. Additional experiments revealed that consumption by spiny lobsters (Panulirus interruptus) and a gastropod (Pteropurpura festiva) likely are the primary factors responsible for resistance to Asian mussel invasion. However, biotic resistance was dependent on location within the estuary (for both species) and also on the availability of a hard substratum (for P. festiva). Our findings indicate that biotic resistance in the form of predation may be conferred by higher order predators, but that the strength of resistance may strongly vary across estuarine gradients and depend on the nature of the locally available habitat.

Hydrodynamic sensory stressors produce nonlinear predation patterns

Predators often have large effects on community structure, but these effects can be minimized in habitats subjected to intense physical stress. For example, predators exert large effects on rocky intertidal communities on wave-protected shores but are usually absent from wave-swept shores where hydrodynamic forces prevent them from foraging effectively. The physical environment also can affect predation levels when stressors are not severe enough to be physically risky. In these situations, environmental conditions may constrain a predator's ability to locate prey and alleviate predation pressure. Yet, stress models of community structure have rarely considered the implications of such sensory or behavioral stressors, particularly when the sensory abilities of both predators and prey are affected by the same types of environmental conditions. Ecologists may classify certain environmental conditions as refuges if they impede predator foraging, but these conditions may not actually decrease predation levels if they simultaneously increase prey vulnerability to consumers. Using blue crabs (Callinectes sapidus) and hard clams (Mercenaria mercenaria) as a model system, we investigated the relationship between predation intensity and environmental stress in the form of hydrodynamics (i.e., flow velocity and turbulence). Blue crabs and hard clams are less responsive to each other in faster, more turbulent flows, but studies exploring how flow modulates the outcomes of crab-clam interactions in the field are lacking. We manipulated turbulence within field sites and compared predation levels within and between sites that differed in flow velocity and turbulence. Our results suggest that blue crabs are most effective foragers in flows with intermediate velocities and turbulence levels. Although these conditions are not ideal for blue crabs, lab studies indicate that they also compromise the ability of clams to detect and react to approaching crabs and, thereby, increase clam vulnerability to predators. Our results suggest that environmental stresses on perception (sensory stressors) may not cause a steady decay in predation rates when they simultaneously affect the behaviors of both predators and prey. Moreover, the relative contribution of lethal vs. nonlethal predator effects in communities also may be influenced by environmental forces that enhance the predator-avoidance abilities of prey or the foraging efficiency of predators.

Algal populations controlled by fish herbivory across a wave exposure gradient on southern temperate shores

Consumers that forage across habitats can affect communities by altering the abundance and distribution of key species. In marine communities, studies of trophic interactions have generally focused on the effects of herbivorous and predatory invertebrates on benthic algae and mussel populations. However, large mobile consumers that move across habitats, such as fishes, can strongly affect community dynamics through consumption of habitat-dominating species, but their effects often vary over environmental gradients. On temperate rocky shores, herbivorous fishes are generally a small part of the fish fauna compared to the tropics, and there is sparse evidence that they play a major direct role in algal community dynamics, particularly of large brown algae that dominate many reefs. In New Zealand, however, a wide-ranging herbivorous fish, Odax pullus, feeds exclusively on macroalgae, including Durvillaea antarctica, a large low-intertidal fucoid reaching 10 m in length and 70 kg in mass. In four experiments we tested the extent of fish herbivory and how it was affected by algal canopy structure across a gradient of wave exposure at multiple sites. Exclusion experiments showed that fish impacts greatly reduced the cover and biomass of Durvillaea and that these effects decreased with increasing wave stress and algal canopy cover, effectively restricting the alga to exposed conditions. Almost all plants were entirely removed by fish where there was a sparse algal canopy in sheltered and semi-exposed sites, but there was significantly less grazing in exposed sites. Recruit Durvillaea beneath canopies were less affected by fish grazing, but they grew slowly. Successful natural recruitment, therefore, occurred almost exclusively on exposed shores outside canopies where many plants escaped severe grazing, and growth to maturity was far greater than elsewhere. Such large and direct impacts on the local and regional distribution of large brown algal populations by mobile vertebrate consumers are rare and were mediated by an environmental gradient and plant density, both of which interact with algal demographics. The study highlights that, even though herbivorous fish diversity may be low, the impacts of particular species may still be high, even in cool temperate waters where fish herbivory is usually considered to be minimal.

Small-mammal herbivore control of secondary succession in New England tidal marshes

Secondary succession is impacted by both biotic and abiotic forces, but their relative importance varies due to environmental drivers. Across estuarine salinity gradients, physical stress increases with salinity, and biotic stresses are greater at lower salinities. In southern New England tidal marshes spanning a landscape-scale salinity gradient, we experimentally examined the effects of physical stress and consumer pressure by mammalian herbivores on secondary succession in artificially created bare patches. Recovery was slower in marshes exposed to full-strength seawater, where physical stress is high. Compared to full-strength salt marshes, recovery in low-salinity marshes was much faster and was influenced by small-mammal consumers. At lower salinities, small mammals selectively ate and prevented the establishment of several native and two invasive, nuisance species (Typha angustifolia and Phragmites australis) but were unable to control the expansion of established P. australis stands. By controlling the establishment of competitively dominant species and the trajectory of secondary succession in low-salinity marshes, small mammals may play a cryptic keystone role in estuarine plant communities and are a critical, overlooked consideration in the conservation and management of estuarine marshes.

Effects of environmental stress on intertidal mussels and their sea star predators

Consumer stress models of ecological theory predict that predators are more susceptible to stress than their prey. Intertidal mussels, Mytilus californianus, span a vertical stress gradient from the low zone (lower stress) to the high zone (higher thermal and desiccation stress), while their sea star predators, Pisaster ochraceus, range from the low zone only into the lower edge of the mussel zone. In summer 2003, we tested the responses of sea stars and mussels to environmental stress in an experiment conducted on the Oregon coast. Mussels were transplanted from the middle of the mussel bed to cages in the low and high edges of the mussel bed. Sea star predators were added to half of the mussel cages. Mussels and sea stars were sampled between June and August for indicators of sublethal stress. Mussel growth was measured, and tissues were collected for heat shock protein (Hsp70) analyses and histological analyses of reproduction. Sea stars were weighed, and tissues were sampled for Hsp70 analyses. Mussels in high-edge cages had higher levels of total Hsp70 and exhibited spawning activity earlier in the summer than mussels in the low-edge cages. Sea stars suffered high mortality in the high edge, and low-edge sea stars lost weight but showed no differences in Hsp70 production. These results suggest that stress in the intertidal zone affected the mobile predator more than its sessile prey, which is consistent with predictions of consumer stress models.

The influence of spatial and size scale on phylogenetic relatedness in tropical forest communities

The relative importance of biotic, abiotic, and stochastic processes in structuring ecological communities continues to be a central focus in community ecology. In order to assess the role of phylogenetic relatedness on the nature of biodiversity we first quantified the degree of phylogenetic niche conservatism of several plant traits linked to plant form and function. Next we quantified the degree of phylogenetic relatedness across two fundamental scaling dimensions: plant size and neighborhood size. The results show that phylogenetic niche conservatism is likely widespread, indicating that closely related species are more functionally similar than distantly related species. Utilizing this information we show that three of five tropical forest dynamics plots (FDPs) exhibit similar scale-dependent patterns of phylogenetic structuring using only a spatial scaling axis. When spatial- and size-scaling axes were analyzed in concert, phylogenetic overdispersion of co-occurring species was most important at small spatial scales and in four of five FDPs for the largest size class. These results suggest that phylogenetic relatedness is increasingly important: (1) at small spatial scales, where phylogenetic overdispersion is more common, and (2) in large size classes, where phylogenetic overdispersion becomes more common throughout ontogeny. Collectively, our results highlight the critical spatial and size scales at which the degree of phylogenetic relatedness between constituent species influences the structuring of tropical forest diversity.

Scales of association: hierarchical linear models and the measurement of ecological systems

A fundamental challenge to understanding patterns in ecological systems lies in employing methods that can analyse, test and draw inference from measured associations between variables across scales. Hierarchical linear models (HLM) use advanced estimation algorithms to measure regression relationships and variance-covariance parameters in hierarchically structured data. Although hierarchical models have occasionally been used in the analysis of ecological data, their full potential to describe scales of association, diagnose variance explained, and to partition uncertainty has not been employed. In this paper we argue that the use of the HLM framework can enable significantly improved inference about ecological processes across levels of organization. After briefly describing the principals behind HLM, we give two examples that demonstrate a protocol for building hierarchical models and answering questions about the relationships between variables at multiple scales. The first example employs maximum likelihood methods to construct a two-level linear model predicting herbivore damage to a perennial plant at the individual- and patch-scale; the second example uses Bayesian estimation techniques to develop a three-level logistic model of plant flowering probability across individual plants, microsites and populations. HLM model development and diagnostics illustrate the importance of incorporating scale when modelling associations in ecological systems and offer a sophisticated yet accessible method for studies of populations, communities and ecosystems. We suggest that a greater coupling of hierarchical study designs and hierarchical analysis will yield significant insights on how ecological processes operate across scales.

Zooplankton community resilience after press-type anthropogenic stress in temporary ponds

Temporary ponds are physically disturbed environments that fluctuate on seasonal and interannual scales. These ecosystems are also susceptible to anthropogenic perturbation such as contamination inputs. However, the interactive effects of natural disturbance and anthropogenic stress on ecosystem processes and community dynamics have hardly been assessed in these ecosystem types. We used a multiple before-after control-impact (MBACI) design to study zooplankton community recovery from low and high inputs of a fire retardant in artificially constructed ponds over three hydroperiods. The retardant caused a decline in species richness and an increase in rotifers during summer and winter months relative to controls and pretreatment dates, and the duration of these changes varied among retardant treatments. In nonmetric, multidimensional scaling analyses the increased rotifer densities were reflected in loops that showed recurring deviations from and (upon collapse) approaches to reference conditions, while the effects of the anthropogenic stressor persisted in the ponds. The amplitudes of fluctuation followed no regular patterns; it varied with retardant treatment level and was higher in the third hydroperiod compared to the second in one of the treatments. From a temporal perspective, this non-dampened pattern suggests a new cause-effect mechanism for disturbance ecology, which we refer to as a "protracted press disturbance, roller coaster response" relationship. This model emphasizes stochastic oscillations in community composition, punctuated by periods in which the community approaches reference conditions. From the applied viewpoint, this model suggests that the accurate detection of perturbation and the implementation of sound management and restoration strategies will require intensive sampling designs that span multiple hydroperiods in persistently degraded ponds.

From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales

We tested the hypothesis that leaf modifying arthropod communities are correlated with cottonwood host plant genetic variation from local to regional scales. Although recent studies found that host plant genetic composition can structure local dependent herbivore communities, the abiotic environment is a stronger factor than the genetic effect at increasingly larger spatial scales. In contrast to these studies we found that dependent arthropod community structure is correlated with both the cross type composition of cottonwoods and individual genotypes within local rivers up to the regional scale of 720,000 km(2) (Four Corner States region in the southwestern USA). Across this geographical extent comprising two naturally hybridizing cottonwood systems, the arthropod community follows a simple genetic similarity rule: genetically similar trees support more similar arthropod communities than trees that are genetically dissimilar. This relationship can be quantified with or without genetic data in Populus.

Herbivory: effects on plant abundance, distribution and population growth

Plants are attacked by many different consumers. A critical question is how often, and under what conditions, common reductions in growth, fecundity or even survival that occur due to herbivory translate to meaningful impacts on abundance, distribution or dynamics of plant populations. Here, we review population-level studies of the effects of consumers on plant dynamics and evaluate: (i) whether particular consumers have predictably more or less influence on plant abundance, (ii) whether particular plant life-history types are predictably more vulnerable to herbivory at the population level, (iii) whether the strength of plant-consumer interactions shifts predictably across environmental gradients and (iv) the role of consumers in influencing plant distributional limits. Existing studies demonstrate numerous examples of consumers limiting local plant abundance and distribution. We found larger effects of consumers on grassland than woodland forbs, stronger effects of herbivory in areas with high versus low disturbance, but no systematic or unambiguous differences in the impact of consumers based on plant life-history or herbivore feeding mode. However, our ability to evaluate these and other patterns is limited by the small (but growing) number of studies in this area. As an impetus for further study, we review strengths and challenges of population-level studies, such as interpreting net impacts of consumers in the presence of density dependence and seed bank dynamics.