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Jeong WJ, Yu J, Song WJ. Proteins as diverse, efficient, and evolvable scaffolds for artificial metalloenzymes. Chem Commun (Camb) 2020; 56:9586-9599. [DOI: 10.1039/d0cc03137b] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
We have extracted and categorized the desirable properties of proteins that are adapted as the scaffolds for artificial metalloenzymes.
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Affiliation(s)
- Woo Jae Jeong
- Department of Chemistry
- Seoul National University
- Seoul 08826
- Republic of Korea
| | - Jaeseung Yu
- Department of Chemistry
- Seoul National University
- Seoul 08826
- Republic of Korea
| | - Woon Ju Song
- Department of Chemistry
- Seoul National University
- Seoul 08826
- Republic of Korea
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52
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Mani P, Devadas S, Gurusamy T, Karthik PE, Ratheesh BP, Ramanujam K, Mandal S. Sodalite-type Cu-based Three-dimensional Metal-Organic Framework for Efficient Oxygen Reduction Reaction. Chem Asian J 2019; 14:4814-4818. [PMID: 31697018 DOI: 10.1002/asia.201901242] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Revised: 11/06/2019] [Indexed: 11/10/2022]
Abstract
Inspired by copper-based oxygen reduction biocatalysts, we have studied the electrocatalytic behavior of a Cu-based MOF (Cu-BTT) for oxygen reduction reaction (ORR) in alkaline medium. This catalyst reduces the oxygen at the onset (Eonset ) and half-wave potential (E1/2 ) of 0. 940 V and 0.778 V, respectively. The high halfway potential supports the good activity of Cu-BTT MOF. The high ORR catalytic activity can be interpreted by the presence of nitrogen-rich ligand (tetrazole) and the generation of nascent copper(I) during the reaction. In addition to the excellent activity, Cu-BTT MOF showed exceptional stability too, which was confirmed through chronoamperometry study, where current was unchanged up to 12 h. Further, the 4-electrons transfer of ORR kinetics was confirmed by hydrodynamic voltammetry. The oxygen active center namely copper(I) generation during ORR has been understood by the reduction peak in cyclic voltammetry as well in the XPS analysis.
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Affiliation(s)
- Prabu Mani
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerala, 695551, India
| | - Sharat Devadas
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerala, 695551, India
| | - Tamilselvi Gurusamy
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Pitchiah Esakki Karthik
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerala, 695551, India
| | - Balu P Ratheesh
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerala, 695551, India
| | | | - Sukhendu Mandal
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerala, 695551, India
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53
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Mavridis IM, Yannakopoulou K. Porphyrinoid-Cyclodextrin Assemblies in Biomedical Research: An Update. J Med Chem 2019; 63:3391-3424. [PMID: 31808344 DOI: 10.1021/acs.jmedchem.9b01069] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Porphyrinoids, well-known cofactors in fundamental processes of life, have stimulated interest as synthetic models of natural systems and integral components of photodynamic therapy, but their utilization is compromised by self-aggregation in aqueous media. The capacity of cyclodextrins to include hydrophobic molecules in their cavity provides porphyrinoids with a protective environment against oxidation and the ability to disperse efficiently in biological fluids. Moreover, engineered cyclodextrin-porphyrinoid assemblies enhance the photodynamic abilities of porphyrinoids, can carry chemotherapeutics for synergistic modalities, and can be enriched with functions including cell recognition, tissue penetration, and imaging. This Perspective includes synthetic porphyrinoid-cyclodextrin models of proteins participating in fundamental processes, such as enzymatic catalysis, respiration, and electron transfer. In addition, since porphyrinoid-cyclodextrin systems comprise third generation photosensitizers, recent developments for their utilization in photomedicine, that is, multimodal therapy for cancer (e.g., PDT, PTT) and antimicrobial treatment, and eventually in biocompatible therapeutic or diagnostic platforms for next-generation nanomedicine and theranostics are discussed.
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Affiliation(s)
- Irene M Mavridis
- Institute of Nanoscience and Nanotechnology, National Center for Scientific Research "Demokritos", Patriarchou Gregoriou & 27 Neapoleos Str., Agia Paraskevi, Attiki 15341, Greece
| | - Konstantina Yannakopoulou
- Institute of Nanoscience and Nanotechnology, National Center for Scientific Research "Demokritos", Patriarchou Gregoriou & 27 Neapoleos Str., Agia Paraskevi, Attiki 15341, Greece
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54
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Zhang R, Zhou Y, Yan X, Fan K. Advances in chiral nanozymes: a review. Mikrochim Acta 2019; 186:782. [DOI: 10.1007/s00604-019-3922-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Accepted: 10/12/2019] [Indexed: 02/08/2023]
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55
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Zheng S, Zhao L, Wei J, He C, Liu G, Duan C. A new cobalt triangular prism supramolecular flask: Encapsulation of a quinhydrone cofactor for hydrogenation of nitroarenes with high selectivity and efficiency. INORG CHEM COMMUN 2019. [DOI: 10.1016/j.inoche.2019.107558] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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56
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Lin YW. Rational Design of Artificial Metalloproteins and Metalloenzymes with Metal Clusters. Molecules 2019; 24:E2743. [PMID: 31362341 PMCID: PMC6696605 DOI: 10.3390/molecules24152743] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Revised: 07/24/2019] [Accepted: 07/26/2019] [Indexed: 01/22/2023] Open
Abstract
Metalloproteins and metalloenzymes play important roles in biological systems by using the limited metal ions, complexes, and clusters that are associated with the protein matrix. The design of artificial metalloproteins and metalloenzymes not only reveals the structure and function relationship of natural proteins, but also enables the synthesis of artificial proteins and enzymes with improved properties and functions. Acknowledging the progress in rational design from single to multiple active sites, this review focuses on recent achievements in the design of artificial metalloproteins and metalloenzymes with metal clusters, including zinc clusters, cadmium clusters, iron-sulfur clusters, and copper-sulfur clusters, as well as noble metal clusters and others. These metal clusters were designed in both native and de novo protein scaffolds for structural roles, electron transfer, or catalysis. Some synthetic metal clusters as functional models of native enzymes are also discussed. These achievements provide valuable insights for deep understanding of the natural proteins and enzymes, and practical clues for the further design of artificial enzymes with functions comparable or even beyond those of natural counterparts.
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Affiliation(s)
- Ying-Wu Lin
- School of Chemistry and Chemical Engineering, University of South China, Hengyang 421001, China.
- Laboratory of Protein Structure and Function, University of South China, Hengyang 421001, China.
- Hunan Key Laboratory for the Design and Application of Actinide Complexes, University of South China, Hengyang 421001, China.
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57
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Li XN, Wang LN, Mou LH, He SG. Catalytic CO Oxidation by Gas-Phase Metal Oxide Clusters. J Phys Chem A 2019; 123:9257-9267. [DOI: 10.1021/acs.jpca.9b05185] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Xiao-Na Li
- State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- Beijing National Laboratory for Molecular Sciences and CAS Research/Education Center of Excellence in Molecular Sciences, Beijing 100190, China
| | - Li-Na Wang
- State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Beijing National Laboratory for Molecular Sciences and CAS Research/Education Center of Excellence in Molecular Sciences, Beijing 100190, China
| | - Li-Hui Mou
- State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Beijing National Laboratory for Molecular Sciences and CAS Research/Education Center of Excellence in Molecular Sciences, Beijing 100190, China
| | - Sheng-Gui He
- State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Beijing National Laboratory for Molecular Sciences and CAS Research/Education Center of Excellence in Molecular Sciences, Beijing 100190, China
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Schön F, Biebl F, Greb L, Leingang S, Grimm‐Lebsanft B, Teubner M, Buchenau S, Kaifer E, Rübhausen MA, Himmel H. On the Metal Cooperativity in a Dinuclear Copper–Guanidine Complex for Aliphatic C−H Bond Cleavage by Dioxygen. Chemistry 2019; 25:11257-11268. [DOI: 10.1002/chem.201901906] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Indexed: 01/01/2023]
Affiliation(s)
- Florian Schön
- Anorganisch-Chemisches InstitutRuprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Florian Biebl
- Institut für Nanostruktur- und FestkörperphysikUniversität Hamburg and Center for Free Electron Laser Science Luruper Chaussee 149 22761 Hamburg Germany
| | - Lutz Greb
- Anorganisch-Chemisches InstitutRuprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Simone Leingang
- Anorganisch-Chemisches InstitutRuprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Benjamin Grimm‐Lebsanft
- Institut für Nanostruktur- und FestkörperphysikUniversität Hamburg and Center for Free Electron Laser Science Luruper Chaussee 149 22761 Hamburg Germany
| | - Melissa Teubner
- Institut für Nanostruktur- und FestkörperphysikUniversität Hamburg and Center for Free Electron Laser Science Luruper Chaussee 149 22761 Hamburg Germany
| | - Sören Buchenau
- Institut für Nanostruktur- und FestkörperphysikUniversität Hamburg and Center for Free Electron Laser Science Luruper Chaussee 149 22761 Hamburg Germany
| | - Elisabeth Kaifer
- Anorganisch-Chemisches InstitutRuprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Michael A. Rübhausen
- Institut für Nanostruktur- und FestkörperphysikUniversität Hamburg and Center for Free Electron Laser Science Luruper Chaussee 149 22761 Hamburg Germany
| | - Hans‐Jörg Himmel
- Anorganisch-Chemisches InstitutRuprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
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59
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Mirts EN, Bhagi-Damodaran A, Lu Y. Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors. Acc Chem Res 2019; 52:935-944. [PMID: 30912643 DOI: 10.1021/acs.accounts.9b00011] [Citation(s) in RCA: 93] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Metalloproteins set the gold standard for performing important functions, including catalyzing demanding reactions under mild conditions. Designing artificial metalloenzymes (ArMs) to catalyze abiological reactions has been a major endeavor for many years, but most ArM activities are far below those of native enzymes, making them unsuitable for most pratical applications. A critical step to advance the field is to fundamentally understand what it takes to not only confer but also fine-tune ArM activities so they match those of native enzymes. Indeed, only once we can freely modulate ArM activity to rival (or surpass!) natural enzymes can the potential of ArMs be fully realized. A key to unlocking ArM potential is the observation that one metal primary coordination sphere can display a range of functions and levels of activity, leading to the realization that secondary coordination sphere (SCS) interactions are critically important. However, SCS interactions are numerous, long-range, and weak, making them very difficult to reproduce in ArMs. Furthermore, natural enzymes are tied to a small set of biologically available functional moieties from canonical amino acids and physiologically available metal ions and metallocofactors, severely limiting the chemical space available to probe and tune ArMs. In this Account, we summarize the use of unnatural amino acids (UAAs) and non-native metal ions and metallocofactors by our group and our collaborators to probe and modulate ArM functions. We incorporated isostructural UAAs in a type 1 copper (T1Cu) protein azurin to provide conclusive evidence that axial ligand hydrophobicity is a major determinant of T1Cu redunction potential ( E°'). Closely related work from other groups are also discussed. We also probed the role of protein backbone interactions that cannot be altered by standard mutagenesis by replacing the peptide bond with an ester linkage. We used insight gained from these studies to tune the E°' of azurin across the entire physiological range, the broadest range ever achieved in a single metalloprotein. Introducing UAA analogues of Tyr into ArM models of heme-copper oxidase (HCO) revealed a linear relationship between p Ka, E°', and activity. We also substituted non-native hemes and non-native metal ions for their native equivalents in these models to resolve several issues that were intractable in native HCOs and the closely related nitric oxide reductases, such as their roles in modulating substrate affinity, electron transfer rate, and activity. We incorporated abiological cofactors such as ferrocene and Mn(salen) into azurin and myoglobin, respectively, to stabilize these inorganic and organometallic compounds in water, confer abiological functions, tune their E°' and activity through SCS interactions, and show that the approach to metallocofactor anchoring and orientation can tune enantioselectivity and alter function. Replacing Cu in azurin with non-native Fe or Ni can impart novel activities, such as superoxide reduction and C-C bond formation. While progress was made, we have identified only a small fraction of the interactions that can be generally applied to ArMs to fine-tune their functions. Because SCS interactions are subtle and heavily interconnected, it has been difficult to characterize their effects quantitatively. It is vital to develop spectroscopic and computational techniques to detect and quantify their effects in both resting states and catalytic intermediates.
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Affiliation(s)
- Evan N. Mirts
- Department of Chemistry and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Ambika Bhagi-Damodaran
- Department of Chemistry and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Yi Lu
- Department of Chemistry and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
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60
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Xiang W, Zhou T, Wang Y, Huang M, Wu X, Mao J, Lu X, Zhang B. Catalytic oxidation of diclofenac by hydroxylamine-enhanced Cu nanoparticles and the efficient neutral heterogeneous-homogeneous reactive copper cycle. WATER RESEARCH 2019; 153:274-283. [PMID: 30735957 DOI: 10.1016/j.watres.2019.01.024] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Revised: 01/07/2019] [Accepted: 01/11/2019] [Indexed: 06/09/2023]
Abstract
This study has demonstrated that hydroxylamine (HA) could greatly enhance Cu nanoparticles (nCu) in activating molecular oxygen and significantly elevate the diclofenac (DCF) degradation rate about two orders of magnitude in neutral circumstances. Effects of several important parameters on the DCF degradation such as nCu loading, HA dosage, pH and reaction temperature were investigated in the nCu/HA/O2 system. Multiple examinations revealed that the reactive Cu(III) species instead of OH• would be predominant in the nCu/HA/O2 system, despite their similar DCF degradation pathways. Based on a HA-enhanced copper cycle depending on the pristine Cu0@Cu(I) (hydro)oxides core-shell structure, the heterogeneous-homogeneous reaction mechanism was proposed. It included solid-liquid interfacial and bulk reactions, e.g. heterogeneous activation of O2 by Cu(I) to produce H2O2 and homogeneous Cu(I)-catalytic generation of Cu(III) from H2O2. Further quantitative investigation of the main reactive species in the cycle revealed that the Cu(I) regeneration instead of the O2 activation would be rate-limited. Besides, nCu could be recycled to effectively degrade DCF in four consecutive cycles in the raw neural nCu/HA/O2 system. It suggested that the nCu/HA/O2 system with a more efficient copper cycle would be a good alternative Fenton-like system in treating neutral recalcitrant organic wastewaters.
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Affiliation(s)
- Wei Xiang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China; Key Laboratory of Water and Wastewater Treatment (HUST), MOHURD, Wuhan, 430074, PR China
| | - Tao Zhou
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China.
| | - Yifan Wang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China; Key Laboratory of Water and Wastewater Treatment (HUST), MOHURD, Wuhan, 430074, PR China
| | - Mingjie Huang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China
| | - Xiaohui Wu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China; Key Laboratory of Water and Wastewater Treatment (HUST), MOHURD, Wuhan, 430074, PR China
| | - Juan Mao
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China; Key Laboratory of Water and Wastewater Treatment (HUST), MOHURD, Wuhan, 430074, PR China
| | - Xiejuan Lu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China; Key Laboratory of Water and Wastewater Treatment (HUST), MOHURD, Wuhan, 430074, PR China.
| | - Beiping Zhang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, 430074, PR China; Key Laboratory of Water and Wastewater Treatment (HUST), MOHURD, Wuhan, 430074, PR China
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61
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Bakandritsos A, Kadam RG, Kumar P, Zoppellaro G, Medved' M, Tuček J, Montini T, Tomanec O, Andrýsková P, Drahoš B, Varma RS, Otyepka M, Gawande MB, Fornasiero P, Zbořil R. Mixed-Valence Single-Atom Catalyst Derived from Functionalized Graphene. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2019; 31:e1900323. [PMID: 30811705 DOI: 10.1002/adma.201900323] [Citation(s) in RCA: 86] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Indexed: 05/23/2023]
Abstract
Single-atom catalysts (SACs) aim at bridging the gap between homogeneous and heterogeneous catalysis. The challenge is the development of materials with ligands enabling coordination of metal atoms in different valence states, and preventing leaching or nanoparticle formation. Graphene functionalized with nitrile groups (cyanographene) is herein employed for the robust coordination of Cu(II) ions, which are partially reduced to Cu(I) due to graphene-induced charge transfer. Inspired by nature's selection of Cu(I) in enzymes for oxygen activation, this 2D mixed-valence SAC performs flawlessly in two O2 -mediated reactions: the oxidative coupling of amines and the oxidation of benzylic CH bonds toward high-value pharmaceutical synthons. High conversions (up to 98%), selectivities (up to 99%), and recyclability are attained with very low metal loadings in the reaction. The synergistic effect of Cu(II) and Cu(I) is the essential part in the reaction mechanism. The developed strategy opens the door to a broad portfolio of other SACs via their coordination to various functional groups of graphene, as demonstrated by successful entrapment of FeIII /FeII single atoms to carboxy-graphene.
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Affiliation(s)
- Aristides Bakandritsos
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Ravishankar G Kadam
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Pawan Kumar
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Giorgio Zoppellaro
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Miroslav Medved'
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Jiří Tuček
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Tiziano Montini
- Department of Chemical and Pharmaceutical Sciences, INSTM Trieste Research Unit and ICCOM-CNR Trieste Research Unit, University of Trieste, via L. Giorgieri 1, I-34127, Trieste, Italy
| | - Ondřej Tomanec
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Pavlína Andrýsková
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Bohuslav Drahoš
- Regional Centre of Advanced Technologies and Materials, Department of Inorganic Chemistry, Faculty of Science, Palacký University Olomouc, 17. listopadu 12, 771 46, Olomouc, Czech Republic
| | - Rajender S Varma
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Michal Otyepka
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Manoj B Gawande
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
| | - Paolo Fornasiero
- Department of Chemical and Pharmaceutical Sciences, INSTM Trieste Research Unit and ICCOM-CNR Trieste Research Unit, University of Trieste, via L. Giorgieri 1, I-34127, Trieste, Italy
| | - Radek Zbořil
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic
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62
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Wind M, Hoof S, Herwig C, Braun‐Cula B, Limberg C. The Influence of Alkali Metal Ions on the Stability and Reactivity of Chromium(III) Superoxide Moieties Spanned by Siloxide Ligands. Chemistry 2019; 25:5743-5750. [DOI: 10.1002/chem.201900236] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Indexed: 01/09/2023]
Affiliation(s)
- Marie‐Louise Wind
- Department of ChemistryHumboldt-Universität zu Berlin Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Santina Hoof
- Department of ChemistryHumboldt-Universität zu Berlin Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Christian Herwig
- Department of ChemistryHumboldt-Universität zu Berlin Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Beatrice Braun‐Cula
- Department of ChemistryHumboldt-Universität zu Berlin Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Christian Limberg
- Department of ChemistryHumboldt-Universität zu Berlin Brook-Taylor-Strasse 2 12489 Berlin Germany
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63
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Degli Esposti M, Mentel M, Martin W, Sousa FL. Oxygen Reductases in Alphaproteobacterial Genomes: Physiological Evolution From Low to High Oxygen Environments. Front Microbiol 2019; 10:499. [PMID: 30936856 PMCID: PMC6431628 DOI: 10.3389/fmicb.2019.00499] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Accepted: 02/27/2019] [Indexed: 01/24/2023] Open
Abstract
Oxygen reducing terminal oxidases differ with respect to their subunit composition, heme groups, operon structure, and affinity for O2. Six families of terminal oxidases are currently recognized, all of which occur in alphaproteobacterial genomes, two of which are also present in mitochondria. Many alphaproteobacteria encode several different terminal oxidases, likely reflecting ecological versatility with respect to oxygen levels. Terminal oxidase evolution likely started with the advent of O2 roughly 2.4 billion years ago and terminal oxidases diversified in the Proterozoic, during which oxygen levels remained low, around the Pasteur point (ca. 2 μM O2). Among the alphaproteobacterial genomes surveyed, those from members of the Rhodospirillaceae reveal the greatest diversity in oxygen reductases. Some harbor all six terminal oxidase types, in addition to many soluble enzymes typical of anaerobic fermentations in mitochondria and hydrogenosomes of eukaryotes. Recent data have it that O2 levels increased to current values (21% v/v or ca. 250 μM) only about 430 million years ago. Ecological adaptation brought forth different lineages of alphaproteobacteria and different lineages of eukaryotes that have undergone evolutionary specialization to high oxygen, low oxygen, and anaerobic habitats. Some have remained facultative anaerobes that are able to generate ATP with or without the help of oxygen and represent physiological links to the ancient proteobacterial lineage at the origin of mitochondria and eukaryotes. Our analysis reveals that the genomes of alphaproteobacteria appear to retain signatures of ancient transitions in aerobic metabolism, findings that are relevant to mitochondrial evolution in eukaryotes as well.
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Affiliation(s)
| | - Marek Mentel
- Faculty of Natural Sciences, Department of Biochemistry, Comenius University in Bratislava, Bratislava, Slovakia
| | - William Martin
- Institute of Molecular Evolution, University of Düsseldorf, Düsseldorf, Germany
| | - Filipa L Sousa
- Division of Archaea Biology and Ecogenomics, Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
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64
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Zhou Y, Shi Y, Wang FB, Xia XH. Oriented Self-Assembled Monolayer of Zn(II)-Tetraphenylporphyrin on TiO2 Electrode for Photoelectrochemical Analysis. Anal Chem 2019; 91:2759-2767. [DOI: 10.1021/acs.analchem.8b04478] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Yue Zhou
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Yi Shi
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Feng-Bin Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Xing-Hua Xia
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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65
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Bhagi-Damodaran A, Lu Y. The Periodic Table's Impact on Bioinorganic Chemistry and Biology's Selective Use of Metal Ions. STRUCTURE AND BONDING 2019; 182:153-173. [PMID: 36567794 PMCID: PMC9788643 DOI: 10.1007/430_2019_45] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Despite the availability of a vast variety of metal ions in the periodic table, biology uses only a selective few metal ions. Most of the redox active metals used belong to the first row of transition metals in the periodic table and include Fe, Co, Ni, Mn and Cu. On the other hand, Ca, Zn and Mg are the most commonly used redox inactive metals in biology. In this chapter, we discuss the periodic table's impact on bio-inorganic chemistry, by exploring reasons behind this selective choice of metals biology. A special focus is placed on the chemical and functional reasons why one metal ion is preferred over another one. We discuss the implications of metal choice in various biological processes including catalysis, electron transfer, redox sensing and signaling. We find that bioavailability of metal ions along with their redox potentials, coordination flexibility, valency and ligand affinity determine the specificity of metals for biological processes. Understanding the implications underlying the selective choice of metals of the periodic table in these biological processes can help design more efficient catalysts, more precise biosensors and more effective drugs.
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Affiliation(s)
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801
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66
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Shi Y, Zhang Y. Mechanisms of HNO Reactions with Ferric Heme Proteins. Angew Chem Int Ed Engl 2018; 57:16654-16658. [PMID: 30347123 PMCID: PMC6522253 DOI: 10.1002/anie.201807699] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Indexed: 02/06/2023]
Abstract
Many HNO-scavenging pathways exist to regulate its biological and pharmacological activities. Such reactions often involve ferric heme proteins and form an important basis for HNO probe development. However, mechanisms of HNO reactions with ferric heme proteins are largely unknown. We performed a computational investigation using metmyoglobin and catalase as representative ferric heme proteins with neutral and negatively charged axial ligands to provide the first detailed pathways. The results reproduced experimental barriers well with an average error of 0.11 kcal mol-1 . The rate-limiting step was found to be dissociation of the resting ligand or HNO coordination when there is no resting ligand. For both heme proteins, in contrast to the non-heme case, the reductive nitrosylation step was found to be barrierless proton-coupled electron transfer, which provides the major thermodynamic driving force for the overall reaction. The origin of the difference in reactivity between metmyoglobin and catalase was also revealed.
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Affiliation(s)
- Yelu Shi
- Department of Chemistry and Chemical Biology, Stevens Institute of Technology, 1 Castle Point on Hudson, Hoboken, NJ, 07030, USA
| | - Yong Zhang
- Department of Chemistry and Chemical Biology, Stevens Institute of Technology, 1 Castle Point on Hudson, Hoboken, NJ, 07030, USA
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67
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68
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Adam SM, Wijeratne GB, Rogler PJ, Diaz DE, Quist DA, Liu JJ, Karlin KD. Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function. Chem Rev 2018; 118:10840-11022. [PMID: 30372042 PMCID: PMC6360144 DOI: 10.1021/acs.chemrev.8b00074] [Citation(s) in RCA: 145] [Impact Index Per Article: 24.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Heme-copper oxidases (HCOs) are terminal enzymes on the mitochondrial or bacterial respiratory electron transport chain, which utilize a unique heterobinuclear active site to catalyze the 4H+/4e- reduction of dioxygen to water. This process involves a proton-coupled electron transfer (PCET) from a tyrosine (phenolic) residue and additional redox events coupled to transmembrane proton pumping and ATP synthesis. Given that HCOs are large, complex, membrane-bound enzymes, bioinspired synthetic model chemistry is a promising approach to better understand heme-Cu-mediated dioxygen reduction, including the details of proton and electron movements. This review encompasses important aspects of heme-O2 and copper-O2 (bio)chemistries as they relate to the design and interpretation of small molecule model systems and provides perspectives from fundamental coordination chemistry, which can be applied to the understanding of HCO activity. We focus on recent advancements from studies of heme-Cu models, evaluating experimental and computational results, which highlight important fundamental structure-function relationships. Finally, we provide an outlook for future potential contributions from synthetic inorganic chemistry and discuss their implications with relevance to biological O2-reduction.
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Affiliation(s)
- Suzanne M. Adam
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Gayan B. Wijeratne
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Patrick J. Rogler
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Daniel E. Diaz
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - David A. Quist
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Jeffrey J. Liu
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Kenneth D. Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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69
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Zhang H, He H, Jiang X, Xia Z, Wei W. Preparation and Characterization of Chiral Transition-Metal Dichalcogenide Quantum Dots and Their Enantioselective Catalysis. ACS APPLIED MATERIALS & INTERFACES 2018; 10:30680-30688. [PMID: 30113158 DOI: 10.1021/acsami.8b10594] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Two-dimensional transition-metal dichalcogenides (TMDs) had attracted enormous interests owing to their extraordinary optical, physical, and chemical properties. Herein, we prepared for the first time a series of chiral TMD quantum dots (QDs) from MoS2 and WS2 bulk crystals by covalent modification with chiral ligands cysteine and penicillamine. The chiral TMD QDs were carefully investigated by spectroscopic and microscopic techniques. Their chiral optical activity was confirmed by distinct circular dichroism signals different to those of the chiral ligands. Interestingly, with the assistance of copper ions, the chiral QDs displayed strong and chiral selective peroxidase-like activity. Up to now, inorganic nanomaterials with peroxidase-like activity were tremendous but seldom examples with enantioselectivity. The enantioselectivity of our chiral TMD QDs toward chiral substrates d- and l-tyrosinol was highly up to 6.77, which was almost the best performance ever reported. The mechanisms of enantioselectivity was further investigated by quartz crystal microbalance assays. We believed that because of the extraordinary electronic and optical properties, the chiral TMD QDs should be useful for nonlinear optical materials, asymmetric catalysis, chiral and biological sensors, and so on.
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Affiliation(s)
- Huan Zhang
- School of Pharmaceutical Sciences and Innovative Drug Research Centre , Chongqing University , Chongqing 401331 , P. R. China
| | - Hui He
- School of Pharmaceutical Sciences and Innovative Drug Research Centre , Chongqing University , Chongqing 401331 , P. R. China
| | - Xuemei Jiang
- School of Pharmaceutical Sciences and Innovative Drug Research Centre , Chongqing University , Chongqing 401331 , P. R. China
| | - Zhining Xia
- School of Pharmaceutical Sciences and Innovative Drug Research Centre , Chongqing University , Chongqing 401331 , P. R. China
| | - Weili Wei
- School of Pharmaceutical Sciences and Innovative Drug Research Centre , Chongqing University , Chongqing 401331 , P. R. China
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70
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Mukherjee S, Mukherjee M, Mukherjee A, Bhagi-Damodaran A, Lu Y, Dey A. O 2 Reduction by Biosynthetic Models of Cytochrome c Oxidase: Insights into Role of Proton Transfer Residues from Perturbed Active Sites Models of CcO. ACS Catal 2018; 8:8915-8924. [PMID: 35693844 DOI: 10.1021/acscatal.8b02240] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Myoglobin based biosynthetic models of perturbed cytochrome c oxidase (CcO) active site are reconstituted, in situ, on electrodes where glutamate residues are systematically introduced in the distal site of the heme/Cu active site instead of a tyrosine residue. These biochemical electrodes show efficient 4e-/4H+ reduction with turnover rates and numbers more than 107 M-1 s-1 and 104, respectively. The H2O/D2O isotope effects of these series of crystallographically characterized mutants bearing zero, one, and two glutamate residues near the heme Cu active site of these perturbed CcO mimics are 16, 4, and 2, respectively. In situ SERRS-RDE data indicate complete change in the rate-determining step as proton transfer residues are introduced near the active site. The high selectivity for 4e-/4H+ O2 reduction and systematic variation of KSIE demonstrate the dominant role of proton transfer residues on the isotope effect on rate and rate-determining step of O2 reduction.
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Affiliation(s)
- Sohini Mukherjee
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Manjistha Mukherjee
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Arnab Mukherjee
- Department of Chemistry, University of Illinois at Urbana—Champaign, Champaign, Illinois 61801, United States
| | - Ambika Bhagi-Damodaran
- Department of Chemistry, University of Illinois at Urbana—Champaign, Champaign, Illinois 61801, United States
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana—Champaign, Champaign, Illinois 61801, United States
| | - Abhishek Dey
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, Kolkata 700032, India
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71
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Zhang Q, Qin XX, Duan-Mu FP, Ji HM, Shen ZR, Han XP, Hu WB. Isolated Platinum Atoms Stabilized by Amorphous Tungstenic Acid: Metal-Support Interaction for Synergistic Oxygen Activation. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201804319] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Qian Zhang
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Xi-Xi Qin
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Fan-Peng Duan-Mu
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Hui-Ming Ji
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Zhu-Rui Shen
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Xiao-Peng Han
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Wen-Bin Hu
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
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72
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Zhang Q, Qin XX, Duan-Mu FP, Ji HM, Shen ZR, Han XP, Hu WB. Isolated Platinum Atoms Stabilized by Amorphous Tungstenic Acid: Metal-Support Interaction for Synergistic Oxygen Activation. Angew Chem Int Ed Engl 2018; 57:9351-9356. [DOI: 10.1002/anie.201804319] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Revised: 05/24/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Qian Zhang
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Xi-Xi Qin
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Fan-Peng Duan-Mu
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Hui-Ming Ji
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Zhu-Rui Shen
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Xiao-Peng Han
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
| | - Wen-Bin Hu
- School of Materials Science and Engineering; Key Laboratory of Advanced Ceramics and Machining Technology; Ministry of Education; Tianjin University; Tianjin 300350 P. R. China
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73
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Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase. Proc Natl Acad Sci U S A 2018; 115:6195-6200. [PMID: 29802230 DOI: 10.1073/pnas.1720298115] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Despite high structural homology between NO reductases (NORs) and heme-copper oxidases (HCOs), factors governing their reaction specificity remain to be understood. Using a myoglobin-based model of NOR (FeBMb) and tuning its heme redox potentials (E°') to cover the native NOR range, through manipulating hydrogen bonding to the proximal histidine ligand and replacing heme b with monoformyl (MF-) or diformyl (DF-) hemes, we herein demonstrate that the E°' holds the key to reactivity differences between NOR and HCO. Detailed electrochemical, kinetic, and vibrational spectroscopic studies, in tandem with density functional theory calculations, demonstrate a strong influence of heme E°' on NO reduction. Decreasing E°' from +148 to -130 mV significantly impacts electronic properties of the NOR mimics, resulting in 180- and 633-fold enhancements in NO association and heme-nitrosyl decay rates, respectively. Our results indicate that NORs exhibit finely tuned E°' that maximizes their enzymatic efficiency and helps achieve a balance between opposite factors: fast NO binding and decay of dinitrosyl species facilitated by low E°' and fast electron transfer facilitated by high E°'. Only when E°' is optimally tuned in FeBMb(MF-heme) for NO binding, heme-nitrosyl decay, and electron transfer does the protein achieve multiple (>35) turnovers, previously not achieved by synthetic or enzyme-based NOR models. This also explains a long-standing question in bioenergetics of selective cross-reactivity in HCOs. Only HCOs with heme E°' in a similar range as NORs (between -59 and 200 mV) exhibit NOR reactivity. Thus, our work demonstrates efficient tuning of E°' in various metalloproteins for their optimal functionality.
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74
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Hu S, Xiao W, Yang W, Yang J, Fang Y, Xiong J, Luo Z, Deng H, Guo Y, Zhang L, Ding J. Molecular O 2 Activation over Cu(I)-Mediated C≡N Bond for Low-Temperature CO Oxidation. ACS APPLIED MATERIALS & INTERFACES 2018; 10:17167-17174. [PMID: 29682956 DOI: 10.1021/acsami.8b02367] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The activation of molecular oxygen (O2) is extremely crucial in heterogeneous oxidations for various industrial applications. Here, a charge-transfer complex CuTCNQ nanowire (CuTCNQ NW) array grown on the copper foam was first reported to show CO catalytic oxidation activity at a temperature below 200 °C with the activated O2 as an oxidant. The molecular O2 was energetically activated over the Cu(I)-mediated C≡N bond with a lower energy of -1.167 eV and preferentially reduced to •O2- through one-electron transfer during the activation process by density functional theory calculations and electron paramagnetic resonance. The theoretical calculations indicated that the CO molecule was oxidized by the activated O2 on the CuTCNQ NW surface via the Eley-Rideal mechanism, which had been further confirmed by in situ diffuse reflectance infrared Fourier transform spectra. These results indicated that the local C≡N bond electron-state engineering could effectively improve the molecular O2 activation efficiency, which facilitates the low-temperature CO catalytic oxidation. The findings reported here enhance our understanding on the molecular oxygen activation pathway over metal-organic nanocatalysts and provide a new avenue for rational design of novel low-cost, organic-based heterogeneous catalysts.
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Affiliation(s)
- Siyu Hu
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Wen Xiao
- Department of Materials Science and Engineering , National University of Singapore , 117575 , Singapore
| | - Weiwei Yang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Ji Yang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Yarong Fang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Juxia Xiong
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Zhu Luo
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Hongtao Deng
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Yanbing Guo
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Lizhi Zhang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental and Applied Chemistry, College of Chemistry , Central China Normal University , Wuhan 430079 , P. R. China
| | - Jun Ding
- Department of Materials Science and Engineering , National University of Singapore , 117575 , Singapore
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75
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Huang X, Groves JT. Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins. Chem Rev 2018; 118:2491-2553. [PMID: 29286645 PMCID: PMC5855008 DOI: 10.1021/acs.chemrev.7b00373] [Citation(s) in RCA: 591] [Impact Index Per Article: 98.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Indexed: 12/20/2022]
Abstract
As a result of the adaptation of life to an aerobic environment, nature has evolved a panoply of metalloproteins for oxidative metabolism and protection against reactive oxygen species. Despite the diverse structures and functions of these proteins, they share common mechanistic grounds. An open-shell transition metal like iron or copper is employed to interact with O2 and its derived intermediates such as hydrogen peroxide to afford a variety of metal-oxygen intermediates. These reactive intermediates, including metal-superoxo, -(hydro)peroxo, and high-valent metal-oxo species, are the basis for the various biological functions of O2-utilizing metalloproteins. Collectively, these processes are called oxygen activation. Much of our understanding of the reactivity of these reactive intermediates has come from the study of heme-containing proteins and related metalloporphyrin compounds. These studies not only have deepened our understanding of various functions of heme proteins, such as O2 storage and transport, degradation of reactive oxygen species, redox signaling, and biological oxygenation, etc., but also have driven the development of bioinorganic chemistry and biomimetic catalysis. In this review, we survey the range of O2 activation processes mediated by heme proteins and model compounds with a focus on recent progress in the characterization and reactivity of important iron-oxygen intermediates. Representative reactions initiated by these reactive intermediates as well as some context from prior decades will also be presented. We will discuss the fundamental mechanistic features of these transformations and delineate the underlying structural and electronic factors that contribute to the spectrum of reactivities that has been observed in nature as well as those that have been invented using these paradigms. Given the recent developments in biocatalysis for non-natural chemistries and the renaissance of radical chemistry in organic synthesis, we envision that new enzymatic and synthetic transformations will emerge based on the radical processes mediated by metalloproteins and their synthetic analogs.
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Affiliation(s)
- Xiongyi Huang
- Department
of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department
of Chemistry, California Institute of Technology, Pasadena, California 91125, United States
| | - John T. Groves
- Department
of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
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76
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Wang X, Wei C, Su JH, He B, Wen GB, Lin YW, Zhang Y. A Chiral Ligand Assembly That Confers One-Electron O 2 Reduction Activity for a Cu 2+ -Selective Metallohydrogel. Angew Chem Int Ed Engl 2018; 57:3504-3508. [PMID: 29392823 DOI: 10.1002/anie.201801290] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Indexed: 11/11/2022]
Abstract
The design of functional metallohydrogels is attractive but challenging. A rational approach is introduced for designing functional metallohydrogels using chiral ligands, a phenylalanine derivative with a pyridyl group (l/d-PF). Intriguingly, the as-prepared metallohydrogel exhibits excellent O2 binding and activating properties. Insights into the O2 binding pathway reveals the presence of a novel [(l+d)-PF-Cu3+ -O2- ] species, which can efficiently reduce ferric cytochrome c with the reactive O2- by receiving an electron from reductant ascorbic acid. This study provides helpful instructions for developing new artificial systems with specific functions through the effective combination of chiral ligands with metal ions.
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Affiliation(s)
- Xiaojuan Wang
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, 421001, China
| | - Chuanwan Wei
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, 421001, China
| | - Ji-Hu Su
- CAS Key Laboratory of Microscale Magnetic Resonance, Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui, 230026, China
| | - Bo He
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, 421001, China
| | - Ge-Bo Wen
- Laboratory of Protein Structure and Function, University of South China, Hengyang, 421001, China
| | - Ying-Wu Lin
- School of Chemistry and Chemical Engineering, University of South China, Hengyang, 421001, China.,Laboratory of Protein Structure and Function, University of South China, Hengyang, 421001, China
| | - Yi Zhang
- Hunan Provincial Key Laboratory of Chemical Power Sources, College of Chemistry and Chemical Engineering, Central South University, Changsha, 410083, China
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77
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Wang X, Wei C, Su JH, He B, Wen GB, Lin YW, Zhang Y. A Chiral Ligand Assembly That Confers One-Electron O2
Reduction Activity for a Cu2+
-Selective Metallohydrogel. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201801290] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Xiaojuan Wang
- School of Chemistry and Chemical Engineering; University of South China; Hengyang 421001 China
| | - Chuanwan Wei
- School of Chemistry and Chemical Engineering; University of South China; Hengyang 421001 China
| | - Ji-Hu Su
- CAS Key Laboratory of Microscale Magnetic Resonance; Department of Modern Physics; University of Science and Technology of China; Hefei Anhui 230026 China
| | - Bo He
- School of Chemistry and Chemical Engineering; University of South China; Hengyang 421001 China
| | - Ge-Bo Wen
- Laboratory of Protein Structure and Function; University of South China; Hengyang 421001 China
| | - Ying-Wu Lin
- School of Chemistry and Chemical Engineering; University of South China; Hengyang 421001 China
- Laboratory of Protein Structure and Function; University of South China; Hengyang 421001 China
| | - Yi Zhang
- Hunan Provincial Key Laboratory of Chemical Power Sources; College of Chemistry and Chemical Engineering; Central South University; Changsha 410083 China
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78
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Wikström M, Krab K, Sharma V. Oxygen Activation and Energy Conservation by Cytochrome c Oxidase. Chem Rev 2018; 118:2469-2490. [PMID: 29350917 PMCID: PMC6203177 DOI: 10.1021/acs.chemrev.7b00664] [Citation(s) in RCA: 245] [Impact Index Per Article: 40.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
![]()
This review focuses on the type
A cytochrome c oxidases (CcO), which
are found in all mitochondria
and also in several aerobic bacteria. CcO catalyzes
the respiratory reduction of dioxygen (O2) to water by
an intriguing mechanism, the details of which are fairly well understood
today as a result of research for over four decades. Perhaps even
more intriguingly, the membrane-bound CcO couples
the O2 reduction chemistry to translocation of protons
across the membrane, thus contributing to generation of the electrochemical
proton gradient that is used to drive the synthesis of ATP as catalyzed
by the rotary ATP synthase in the same membrane. After reviewing the
structure of the core subunits of CcO, the active
site, and the transfer paths of electrons, protons, oxygen, and water,
we describe the states of the catalytic cycle and point out the few
remaining uncertainties. Finally, we discuss the mechanism of proton
translocation and the controversies in that area that still prevail.
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Affiliation(s)
- Mårten Wikström
- Institute of Biotechnology , University of Helsinki , P.O. Box 56 , Helsinki FI-00014 , Finland
| | - Klaas Krab
- Department of Molecular Cell Physiology , Vrije Universiteit , P.O. Box 7161 , Amsterdam 1007 MC , The Netherlands
| | - Vivek Sharma
- Institute of Biotechnology , University of Helsinki , P.O. Box 56 , Helsinki FI-00014 , Finland.,Department of Physics , University of Helsinki , P.O. Box 64 , Helsinki FI-00014 , Finland
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79
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Kitagishi H, Shimoji D, Ohta T, Kamiya R, Kudo Y, Onoda A, Hayashi T, Weiss J, Wytko JA, Kano K. A water-soluble supramolecular complex that mimics the heme/copper hetero-binuclear site of cytochrome c oxidase. Chem Sci 2018; 9:1989-1995. [PMID: 29675246 PMCID: PMC5892347 DOI: 10.1039/c7sc04732k] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 01/12/2018] [Indexed: 01/16/2023] Open
Abstract
The O2 adduct of an aqueous synthetic heme/copper model system built on a porphyrin/cyclodextrin supramolecular complex has been characterized.
In mitochondria, cytochrome c oxidase (CcO) catalyses the reduction of oxygen (O2) to water by using a heme/copper hetero-binuclear active site. Here we report a highly efficient supramolecular approach for the construction of a water-soluble biomimetic model for the active site of CcO. A tridentate copper(ii) complex was fixed onto 5,10,15,20-tetrakis(4-sulfonatophenyl)porphinatoiron(iii) (FeIIITPPS) through supramolecular complexation between FeIIITPPS and a per-O-methylated β-cyclodextrin dimer linked by a (2,2′:6′,2′′-terpyridyl)copper(ii) complex (CuIITerpyCD2). The reduced FeIITPPS/CuITerpyCD2 complex reacted with O2 in an aqueous solution at pH 7 and 25 °C to form a superoxo-type FeIII–O2–/CuI complex in a manner similar to CcO. The pH-dependent autoxidation of the O2 complex suggests that water molecules gathered at the distal Cu site are possibly involved in the FeIII–O2–/CuI superoxo complex in an aqueous solution. Electrochemical analysis using a rotating disk electrode demonstrated the role of the FeTPPS/CuTerpyCD2 hetero-binuclear structure in the catalytic O2 reduction reaction.
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Affiliation(s)
- Hiroaki Kitagishi
- Department of Molecular Chemistry and Biochemistry , Faculty of Science and Engineering , Doshisha University , Kyotanabe , Kyoto 610-0321 , Japan .
| | - Daiki Shimoji
- Department of Molecular Chemistry and Biochemistry , Faculty of Science and Engineering , Doshisha University , Kyotanabe , Kyoto 610-0321 , Japan .
| | - Takehiro Ohta
- Picobiology Institute , Graduate School of Life Science , University of Hyogo , RSC-UH LP Center , Hyogo 679-5148 , Japan
| | - Ryo Kamiya
- Department of Molecular Chemistry and Biochemistry , Faculty of Science and Engineering , Doshisha University , Kyotanabe , Kyoto 610-0321 , Japan .
| | - Yasuhiro Kudo
- Department of Molecular Chemistry and Biochemistry , Faculty of Science and Engineering , Doshisha University , Kyotanabe , Kyoto 610-0321 , Japan .
| | - Akira Onoda
- Department of Applied Chemistry , Graduate School of Engineering , Osaka University , 2-1 Yamadaoka , Suita 565-0871 , Japan
| | - Takashi Hayashi
- Department of Applied Chemistry , Graduate School of Engineering , Osaka University , 2-1 Yamadaoka , Suita 565-0871 , Japan
| | - Jean Weiss
- Institut de Chimie de Strasbourg , UMR 7177 , CNRS , Université de Strasbourg , 4 Rue Blaise Pascal , 67000 Strasbourg , France
| | - Jennifer A Wytko
- Institut de Chimie de Strasbourg , UMR 7177 , CNRS , Université de Strasbourg , 4 Rue Blaise Pascal , 67000 Strasbourg , France
| | - Koji Kano
- Department of Molecular Chemistry and Biochemistry , Faculty of Science and Engineering , Doshisha University , Kyotanabe , Kyoto 610-0321 , Japan .
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80
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Fukuzumi S, Lee YM, Nam W. Mechanisms of Two-Electron versus Four-Electron Reduction of Dioxygen Catalyzed by Earth-Abundant Metal Complexes. ChemCatChem 2017. [DOI: 10.1002/cctc.201701064] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Shunichi Fukuzumi
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 03760 Korea
- Faculty of Science and Engineering; Meijo University; SENTAN, Japan, Science and Technology Agency, JST; Nagoya Aichi 468-8502 Japan
| | - Yong-Min Lee
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 03760 Korea
| | - Wonwoo Nam
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 03760 Korea
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81
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Lang P, Schwalbe M. Pacman Compounds: From Energy Transfer to Cooperative Catalysis. Chemistry 2017; 23:17398-17412. [DOI: 10.1002/chem.201703675] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2017] [Indexed: 01/08/2023]
Affiliation(s)
- Philipp Lang
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-St. 2 12489 Berlin Germany
| | - Matthias Schwalbe
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-St. 2 12489 Berlin Germany
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82
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Khade RL, Zhang Y. C-H Insertions by Iron Porphyrin Carbene: Basic Mechanism and Origin of Substrate Selectivity. Chemistry 2017; 23:17654-17658. [PMID: 29071754 DOI: 10.1002/chem.201704631] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Indexed: 11/09/2022]
Abstract
Recent experimental reports of heme carbene C-H insertions show promising results for sustainable chemistry due to good yield and selectivity, low cost of iron, and low/no toxicity of hemes. But mechanistic details are mostly unknown. Despite structural similarity and isoelectronic nature between heme carbene and the FeIV =O intermediate, our quantum chemical studies with detailed geometric and electronic information for the first time reveal an FeII -based, concerted, hydride-transfer mechanism, which is different from the FeIV -based stepwise hydrogen atom transfer mechanism for C-H functionalization by native heme enzymes. A trend of broad range experimental C-H insertion yields (0-88 %) of five different C-H bonds, including mostly non-functionalized moieties, was well reproduced. Results suggest that the substrate selectivity originates from the hydride formation capability. The predicted kinetic isotope effects were also in excellent agreement with experiment. Useful geometry, charge, and energy parameters well correlated with barriers were reported. These results provide the first theoretical evidence that carbene formation is the overall rate-limiting step, and suggest a key role of the formation of strong electrophilic heme carbene in developing heme-based C-H insertion catalysts and biocatalysts.
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Affiliation(s)
- Rahul L Khade
- Department of Chemistry and Chemical Biology, Stevens Institute of Technology, 1 Castle Point on Hudson, Hoboken, NJ 07030, USA
| | - Yong Zhang
- Department of Chemistry and Chemical Biology, Stevens Institute of Technology, 1 Castle Point on Hudson, Hoboken, NJ 07030, USA
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83
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Baglia RA, Zaragoza JPT, Goldberg DP. Biomimetic Reactivity of Oxygen-Derived Manganese and Iron Porphyrinoid Complexes. Chem Rev 2017; 117:13320-13352. [PMID: 28991451 PMCID: PMC6058703 DOI: 10.1021/acs.chemrev.7b00180] [Citation(s) in RCA: 204] [Impact Index Per Article: 29.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Heme proteins utilize the heme cofactor, an iron porphyrin, to perform a diverse range of reactions including dioxygen binding and transport, electron transfer, and oxidation/oxygenations. These reactions share several key metalloporphyrin intermediates, typically derived from dioxygen and its congeners such as hydrogen peroxide. These species are composed of metal-dioxygen, metal-superoxo, metal-peroxo, and metal-oxo adducts. A wide variety of synthetic metalloporphyrinoid complexes have been synthesized to generate and stabilize these intermediates. These complexes have been studied to determine the spectroscopic features, structures, and reactivities of such species in controlled and well-defined environments. In this Review, we summarize recent findings on the reactivity of these species with common porphyrinoid scaffolds employed for biomimetic studies. The proposed mechanisms of action are emphasized. This Review is organized by structural type of metal-oxygen intermediate and broken into subsections based on the metal (manganese and iron) and porphyrinoid ligand (porphyrin, corrole, and corrolazine).
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Affiliation(s)
- Regina A. Baglia
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Jan Paulo T. Zaragoza
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - David P. Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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84
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Zhao L, Wei J, Zhang J, He C, Duan C. Encapsulation of a Quinhydrone Cofactor in the Inner Pocket of Cobalt Triangular Prisms: Combined Light-Driven Reduction of Protons and Hydrogenation of Nitrobenzene. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201707676] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Liang Zhao
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Jianwei Wei
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Jing Zhang
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Cheng He
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Chunying Duan
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
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85
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Zhao L, Wei J, Zhang J, He C, Duan C. Encapsulation of a Quinhydrone Cofactor in the Inner Pocket of Cobalt Triangular Prisms: Combined Light-Driven Reduction of Protons and Hydrogenation of Nitrobenzene. Angew Chem Int Ed Engl 2017; 56:15284-15288. [DOI: 10.1002/anie.201707676] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2017] [Indexed: 12/11/2022]
Affiliation(s)
- Liang Zhao
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Jianwei Wei
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Jing Zhang
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Cheng He
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
| | - Chunying Duan
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 China
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86
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Affiliation(s)
- Khokan Choudhuri
- School of Chemical Sciences; National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, PO Bhimpur-Padanpur; Via Jatni District Khurda, Odisha 752050 India
| | - Tapas Kumar Achar
- School of Chemical Sciences; National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, PO Bhimpur-Padanpur; Via Jatni District Khurda, Odisha 752050 India
| | - Prasenjit Mal
- School of Chemical Sciences; National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, PO Bhimpur-Padanpur; Via Jatni District Khurda, Odisha 752050 India
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87
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Reed JH, Shi Y, Zhu Q, Chakraborty S, Mirts EN, Petrik ID, Bhagi-Damodaran A, Ross M, Moënne-Loccoz P, Zhang Y, Lu Y. Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism. J Am Chem Soc 2017; 139:12209-12218. [PMID: 28768416 PMCID: PMC5673108 DOI: 10.1021/jacs.7b05800] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The presence of a nonheme metal, such as copper and iron, in the heme-copper oxidase (HCO) superfamily is critical to the enzymatic activity of reducing O2 to H2O, but the exact mechanism the nonheme metal ion uses to confer and fine-tune the activity remains to be understood. We herein report that manganese and cobalt can bind to the same nonheme site and confer HCO activity in a heme-nonheme biosynthetic model in myoglobin. While the initial rates of O2 reduction by the Mn, Fe, and Co derivatives are similar, the percentages of reactive oxygen species (ROS) formation are 7%, 4%, and 1% and the total turnovers are 5.1 ± 1.1, 13.4 ± 0.7, and 82.5 ± 2.5, respectively. These results correlate with the trends of nonheme-metal-binding dissociation constants (35, 22, and 9 μM) closely, suggesting that tighter metal binding can prevent ROS release from the active site, lessen damage to the protein, and produce higher total turnover numbers. Detailed spectroscopic, electrochemical, and computational studies found no evidence of redox cycling of manganese or cobalt in the enzymatic reactions and suggest that structural and electronic effects related to the presence of different nonheme metals lead to the observed differences in reactivity. This study of the roles of nonheme metal ions beyond the Cu and Fe found in native enzymes has provided deeper insights into nature's choice of metal ion and reaction mechanism and allows for finer control of the enzymatic activity, which is a basis for the design of efficient catalysts for the oxygen reduction reaction in fuel cells.
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Affiliation(s)
- Julian H. Reed
- Department of Biochemistry, University of Illinois at
Urbana-Champaign, Urbana, IL, 61801, USA
| | - Yelu Shi
- Department of Biomedical Engineering, Chemistry, and Biological
Sciences, Stevens Institute of Technology, Hoboken, NJ, 07030, USA
| | - Qianhong Zhu
- Division of Environmental & Biomolecular Systems, Institute
of Environmental Health, Oregon Health & Science University, Portland, OR,
97239, USA
| | - Saumen Chakraborty
- Department of Chemistry & Biochemistry, University of
Mississippi, Oxford, Mississippi, 38677, USA
| | - Evan N. Mirts
- Center for Biophysics and Quantitative Biology, University of
Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Igor D. Petrik
- Department of Chemistry, University of Illinois at Urbana-Champaign,
Urbana, IL, 61801, USA
| | - Ambika Bhagi-Damodaran
- Department of Pharmaceutical Chemistry, University of California,
San Francisco, San Francisco, CA, 94143, USA
| | - Matthew Ross
- Department of Chemistry, Northwestern University, Evanston, IL,
60208, USA
| | - Pierre Moënne-Loccoz
- Division of Environmental & Biomolecular Systems, Institute
of Environmental Health, Oregon Health & Science University, Portland, OR,
97239, USA
| | - Yong Zhang
- Department of Biomedical Engineering, Chemistry, and Biological
Sciences, Stevens Institute of Technology, Hoboken, NJ, 07030, USA
| | - Yi Lu
- Department of Biochemistry, University of Illinois at
Urbana-Champaign, Urbana, IL, 61801, USA
- Center for Biophysics and Quantitative Biology, University of
Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
- Department of Chemistry, University of Illinois at Urbana-Champaign,
Urbana, IL, 61801, USA
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88
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Liu Q, Wang H, Shi X, Wang ZG, Ding B. Self-Assembled DNA/Peptide-Based Nanoparticle Exhibiting Synergistic Enzymatic Activity. ACS NANO 2017; 11:7251-7258. [PMID: 28657711 DOI: 10.1021/acsnano.7b03195] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Designing enzyme-mimicking active sites in artificial systems is key to achieving catalytic efficiencies rivaling those of natural enzymes and can provide valuable insight in the understanding of the natural evolution of enzymes. Here, we report the design of a catalytic hemin-containing nanoparticle with self-assembled guanine-rich nucleic acid/histidine-rich peptide components that mimics the active site and peroxidative activity of hemoproteins. The chemical complementarities between the folded nucleic acid and peptide enable the spatial arrangement of essential elements in the active site and effective activation of hemin. As a result, remarkable synergistic effects of nucleic acid and peptide on the catalytic performances were observed. The turnover number of peroxide reached the order of that of natural peroxidase, and the catalytic efficiency is comparable to that of myoglobin. These results have implications in the precise design of supramolecular enzyme mimetics, particularly those with hierarchical active sites. The assemblies we describe here may also resemble an intermediate in the evolution of contemporary enzymes from the catalytic RNA of primitive cells.
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Affiliation(s)
- Qing Liu
- CAS Key Laboratory of Nanosystem and Hierarchial Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology , Beijing 100190, P.R. China
- University of Chinese Academy of Sciences , Beijing 100049, P.R. China
| | - Hui Wang
- CAS Key Laboratory of Nanosystem and Hierarchial Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology , Beijing 100190, P.R. China
| | - Xinghua Shi
- CAS Key Laboratory of Nanosystem and Hierarchial Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology , Beijing 100190, P.R. China
- University of Chinese Academy of Sciences , Beijing 100049, P.R. China
| | - Zhen-Gang Wang
- CAS Key Laboratory of Nanosystem and Hierarchial Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology , Beijing 100190, P.R. China
| | - Baoquan Ding
- CAS Key Laboratory of Nanosystem and Hierarchial Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology , Beijing 100190, P.R. China
- University of Chinese Academy of Sciences , Beijing 100049, P.R. China
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89
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Xiong Y, Qin Y, Su L, Ye F. Bioinspired Synthesis of Cu2+
-Modified Covalent Triazine Framework: A New Highly Efficient and Promising Peroxidase Mimic. Chemistry 2017; 23:11037-11045. [PMID: 28516466 DOI: 10.1002/chem.201701513] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Yuhao Xiong
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources; College of Chemistry and Pharmaceutical Science, Guangxi Normal University; Guilin 541004 P. R. China
- Institute of Food science and Engineering Technology; Hezhou University; Hezhou 542899 P. R. China
| | - Yuemei Qin
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources; College of Chemistry and Pharmaceutical Science, Guangxi Normal University; Guilin 541004 P. R. China
| | - Linjing Su
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources; College of Chemistry and Pharmaceutical Science, Guangxi Normal University; Guilin 541004 P. R. China
- Institute of Food science and Engineering Technology; Hezhou University; Hezhou 542899 P. R. China
| | - Fanggui Ye
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources; College of Chemistry and Pharmaceutical Science, Guangxi Normal University; Guilin 541004 P. R. China
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90
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Meury M, Knop M, Seebeck FP. Structural Basis for Copper-Oxygen Mediated C−H Bond Activation by the Formylglycine-Generating Enzyme. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201702901] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Marcel Meury
- Department for Chemistry; University of Basel; St. Johanns-Ring 19 4056 Basel Switzerland
| | - Matthias Knop
- Department for Chemistry; University of Basel; St. Johanns-Ring 19 4056 Basel Switzerland
| | - Florian P. Seebeck
- Department for Chemistry; University of Basel; St. Johanns-Ring 19 4056 Basel Switzerland
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91
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Meury M, Knop M, Seebeck FP. Structural Basis for Copper-Oxygen Mediated C−H Bond Activation by the Formylglycine-Generating Enzyme. Angew Chem Int Ed Engl 2017; 56:8115-8119. [DOI: 10.1002/anie.201702901] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Indexed: 12/21/2022]
Affiliation(s)
- Marcel Meury
- Department for Chemistry; University of Basel; St. Johanns-Ring 19 4056 Basel Switzerland
| | - Matthias Knop
- Department for Chemistry; University of Basel; St. Johanns-Ring 19 4056 Basel Switzerland
| | - Florian P. Seebeck
- Department for Chemistry; University of Basel; St. Johanns-Ring 19 4056 Basel Switzerland
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92
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Carvalho RR, Pujari SP, Vrouwe EX, Zuilhof H. Mild and Selective C-H Activation of COC Microfluidic Channels Allowing Covalent Multifunctional Coatings. ACS APPLIED MATERIALS & INTERFACES 2017; 9:16644-16650. [PMID: 28481097 PMCID: PMC5437660 DOI: 10.1021/acsami.7b02022] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2017] [Accepted: 05/01/2017] [Indexed: 05/21/2023]
Abstract
Plastics, such as cyclic olefin copolymer (COC), are becoming an increasingly popular material for microfluidics. COC is used, in part, because of its (bio)-chemical resistance. However, its inertness and hydrophobicity can be a major downside for many bioapplications. In this paper, we show the first example of a surface-bound selective C-H activation of COC into alcohol C-OH moieties under mild aqueous conditions at room temperature. The nucleophilic COC-OH surface allows for subsequent covalent attachments, such as of a H-terminated silane. The resulting hybrid material (COC-Si-H) was then modified via a photolithographic hydrosilylation in the presence of ω-functionalized 1-alkenes to form a new highly stable, solvent-resistant hybrid surface.
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Affiliation(s)
- Rui Rijo Carvalho
- Laboratory of Organic
Chemistry, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands
- Micronit Microtechnologies B.V., Colosseum 15, 7521 PV Enschede, The Netherlands
| | - Sidharam P. Pujari
- Laboratory of Organic
Chemistry, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands
| | - Elwin X. Vrouwe
- Micronit Microtechnologies B.V., Colosseum 15, 7521 PV Enschede, The Netherlands
| | - Han Zuilhof
- Laboratory of Organic
Chemistry, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands
- School of
Pharmaceutical Sciences and Technology, Tianjin University, 92 Weijin Road, Tianjin 300072, P.R. China
- Department of Chemical
and Materials Engineering, King Abdulaziz
University, Jeddah 23218, Saudi Arabia
- E-mail:
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93
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Quist DA, Diaz DE, Liu JJ, Karlin KD. Activation of dioxygen by copper metalloproteins and insights from model complexes. J Biol Inorg Chem 2017; 22:253-288. [PMID: 27921179 PMCID: PMC5600896 DOI: 10.1007/s00775-016-1415-2] [Citation(s) in RCA: 163] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Accepted: 11/11/2016] [Indexed: 02/08/2023]
Abstract
Nature uses dioxygen as a key oxidant in the transformation of biomolecules. Among the enzymes that are utilized for these reactions are copper-containing metalloenzymes, which are responsible for important biological functions such as the regulation of neurotransmitters, dioxygen transport, and cellular respiration. Enzymatic and model system studies work in tandem in order to gain an understanding of the fundamental reductive activation of dioxygen by copper complexes. This review covers the most recent advancements in the structures, spectroscopy, and reaction mechanisms for dioxygen-activating copper proteins and relevant synthetic models thereof. An emphasis has also been placed on cofactor biogenesis, a fundamentally important process whereby biomolecules are post-translationally modified by the pro-enzyme active site to generate cofactors which are essential for the catalytic enzymatic reaction. Significant questions remaining in copper-ion-mediated O2-activation in copper proteins are addressed.
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Affiliation(s)
- David A Quist
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Daniel E Diaz
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Jeffrey J Liu
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA.
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94
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Zhao L, Wei J, Zhang F, He C, Zheng S, Duan C. Redox-active copper triangles as an enzymatic molecular flask for light-driven hydrogen production. RSC Adv 2017. [DOI: 10.1039/c7ra09285g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A redox-active Cu-based triangle was developed to encapsulate fluorescein for photocatalytic hydrogen production. Control experiments and inactive ATP as an inhibitor were performed to confirm this enzymatic photocatalytic behaviour.
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Affiliation(s)
- Liang Zhao
- State Key Laboratory of Fine Chemicals
- Dalian University of Technology
- Dalian 116024
- P. R. China
| | - Jianwei Wei
- State Key Laboratory of Fine Chemicals
- Dalian University of Technology
- Dalian 116024
- P. R. China
| | - Feili Zhang
- State Key Laboratory of Fine Chemicals
- Dalian University of Technology
- Dalian 116024
- P. R. China
| | - Cheng He
- State Key Laboratory of Fine Chemicals
- Dalian University of Technology
- Dalian 116024
- P. R. China
| | - Sijia Zheng
- State Key Laboratory of Fine Chemicals
- Dalian University of Technology
- Dalian 116024
- P. R. China
| | - Chunying Duan
- State Key Laboratory of Fine Chemicals
- Dalian University of Technology
- Dalian 116024
- P. R. China
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95
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Lin YW. Understanding the choice of copper by heme-copper oxidase using biosynthetic models in myoglobin. Inorg Chem Front 2017. [DOI: 10.1039/c6qi00603e] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A long-standing question, why copper is preferred over iron for O2 reduction in heme-copper oxidases, has been answered by studying biosynthetic models in myoglobin.
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Affiliation(s)
- Ying-Wu Lin
- School of Chemistry and Chemical Engineering
- University of South China
- Hengyang 421001
- China
- Laboratory of Protein Structure and Function
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