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Hommel E, Liebers M, Offermann S, Pfannschmidt T. Effectiveness of Light-Quality and Dark-White Growth Light Shifts in Short-Term Light Acclimation of Photosynthesis in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2022; 12:615253. [PMID: 35046964 PMCID: PMC8761940 DOI: 10.3389/fpls.2021.615253] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 12/07/2021] [Indexed: 05/23/2023]
Abstract
Photosynthesis needs to run efficiently under permanently changing illumination. To achieve this, highly dynamic acclimation processes optimize photosynthetic performance under a variety of rapidly changing light conditions. Such acclimation responses are acting by a complex interplay of reversible molecular changes in the photosynthetic antenna or photosystem assemblies which dissipate excess energy and balance uneven excitation between the two photosystems. This includes a number of non-photochemical quenching processes including state transitions and photosystem II remodeling. In the laboratory such processes are typically studied by selective illumination set-ups. Two set-ups known to be effective in a highly similar manner are (i) light quality shifts (inducing a preferential excitation of one photosystem over the other) or (ii) dark-light shifts (inducing a general off-on switch of the light harvesting machinery). Both set-ups result in similar effects on the plastoquinone redox state, but their equivalence in induction of photosynthetic acclimation responses remained still open. Here, we present a comparative study in which dark-light and light-quality shifts were applied to samples of the same growth batches of plants. Both illumination set-ups caused comparable effects on the phosphorylation of LHCII complexes and, hence, on the performance of state transitions, but generated different effects on the degree of state transitions and the formation of PSII super-complexes. The two light set-ups, thus, are not fully equivalent in their physiological effectiveness potentially leading to different conclusions in mechanistic models of photosynthetic acclimation. Studies on the regulation of photosynthetic light acclimation, therefore, requires to regard the respective illumination test set-up as a critical parameter that needs to be considered in the discussion of mechanistic and regulatory aspects in this subject.
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Affiliation(s)
- Elisabeth Hommel
- Pflanzenphysiologie, Institut für Biologie, Universität Leipzig, Leipzig, Germany
| | - Monique Liebers
- Molekulare Pflanzenphysiologie, Institut für Pflanzenwissenschaften und Mikrobiologie, Universität Hamburg, Hamburg, Germany
| | - Sascha Offermann
- Pflanzenphysiologie, Institut für Botanik, Naturwissenschaftliche Fakultät, Leibniz-Universität Hannover, Hanover, Germany
| | - Thomas Pfannschmidt
- Pflanzenphysiologie, Institut für Botanik, Naturwissenschaftliche Fakultät, Leibniz-Universität Hannover, Hanover, Germany
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Guha A, Vharachumu T, Khalid MF, Keeley M, Avenson TJ, Vincent C. Short-term warming does not affect intrinsic thermotolerance but induces strong sustaining photoprotection in tropical evergreen citrus genotypes. PLANT, CELL & ENVIRONMENT 2022; 45:105-120. [PMID: 34723384 DOI: 10.1111/pce.14215] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 10/04/2021] [Accepted: 10/13/2021] [Indexed: 05/27/2023]
Abstract
Consequences of warming and postwarming events on photosynthetic thermotolerance (PT ) and photoprotective responses in tropical evergreen species remain elusive. We chose Citrus to answer some of the emerging questions related to tropical evergreen species' PT behaviour including (i) how wide is the genotypic variation in PT ? (ii) how does PT respond to short-term warming and (iii) how do photosynthesis and photoprotective functions respond over short-term warming and postwarming events? A study on 21 genotypes revealed significant genotypic differences in PT , though these were not large. We selected five genotypes with divergent PT and simulated warming events: Tmax 26/20°C (day-time highest maximum/night-time lowest maximum) (Week 1) < Tmax 33/30°C (Week 2) < Tmax 36/32°C (Week 3) followed by Tmax 26/16°C (Week 4, recovery). The PT of all genotypes remained unaltered despite strong leaf megathermy (leaf temperature > air temperature) during warming events. Though moderate warming showed genotype-specific stimulation in photosynthesis, higher warming unequivocally led to severe loss in net photosynthesis and induced higher nonphotochemical quenching. Even after a week of postwarming, photoprotective mechanisms strongly persisted. Our study points towards a conservative PT in evergreen citrus genotypes and their need for sustaining higher photoprotection during warming as well as postwarming recovery conditions.
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Affiliation(s)
- Anirban Guha
- Department of Horticultural Sciences, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida, USA
| | - Talent Vharachumu
- Department of Horticultural Sciences, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida, USA
- Earth University, San José, Mercedes, Costa Rica
| | - Muhammad F Khalid
- Department of Horticultural Sciences, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida, USA
- Department of Horticulture, Bahauddin Zakariya University, Multan, Punjab, Pakistan
| | - Mark Keeley
- Department of Horticultural Sciences, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida, USA
- Agronomy and Regulatory (GLP) Services, Florida Ag Research, Thonotosassa, Florida, USA
| | - Thomas J Avenson
- Environmental Division, LI-COR Biosciences, Lincoln, Nebraska, USA
| | - Christopher Vincent
- Department of Horticultural Sciences, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida, USA
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Fattore N, Savio S, Vera‐Vives AM, Battistuzzi M, Moro I, La Rocca N, Morosinotto T. Acclimation of photosynthetic apparatus in the mesophilic red alga Dixoniella giordanoi. PHYSIOLOGIA PLANTARUM 2021; 173:805-817. [PMID: 34171145 PMCID: PMC8596783 DOI: 10.1111/ppl.13489] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 06/17/2021] [Indexed: 06/13/2023]
Abstract
Eukaryotic algae are photosynthetic organisms capable of exploiting sunlight to fix carbon dioxide into biomass with highly variable genetic and metabolic features. Information on algae metabolism from different species is inhomogeneous and, while green algae are, in general, more characterized, information on red algae is relatively scarce despite their relevant position in eukaryotic algae diversity. Within red algae, the best-known species are extremophiles or multicellular, while information on mesophilic unicellular organisms is still lacunose. Here, we investigate the photosynthetic properties of a recently isolated seawater unicellular mesophilic red alga, Dixoniella giordanoi. Upon exposure to different illuminations, D. giordanoi shows the ability to acclimate, modulate chlorophyll content, and re-organize thylakoid membranes. Phycobilisome content is also largely regulated, leading to almost complete disassembly of this antenna system in cells grown under intense illumination. Despite the absence of a light-induced xanthophyll cycle, cells accumulate zeaxanthin upon prolonged exposure to strong light, likely contributing to photoprotection. D. giordanoi cells show the ability to perform cyclic electron transport that is enhanced under strong illumination, likely contributing to the protection of Photosystem I from over-reduction and enabling cells to survive PSII photoinhibition without negative impact on growth.
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Affiliation(s)
| | - Simone Savio
- Department of BiologyUniversity of PadovaPadovaItaly
| | | | - Mariano Battistuzzi
- Department of BiologyUniversity of PadovaPadovaItaly
- Centro di Ateneo di Studi e Attività Spaziali (CISAS) “Giuseppe Colombo”University of PadovaPadovaItaly
| | - Isabella Moro
- Department of BiologyUniversity of PadovaPadovaItaly
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Cheng JS, Duan W, Tang XL, Zhang YG, Li B, Wang YJ, Yang CX, Song ZZ, Wang LJ, Yang J, Yu Y, Sun XB, Liang MX, Liang ZC, Zhang HX. Low sink demand caused net photosynthetic rate decrease is closely related to the irrecoverable damage of oxygen-releasing complex and electron receptor in peach trees. JOURNAL OF PLANT PHYSIOLOGY 2021; 266:153510. [PMID: 34521019 DOI: 10.1016/j.jplph.2021.153510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 08/31/2021] [Accepted: 08/31/2021] [Indexed: 06/13/2023]
Abstract
Source sink balance is one of the major determinants of carbon partitioning in plants. However, its effects on photosynthesis in fruit trees are largely unknown. In this work, the effects of low sink demand on net photosynthetic rate (Pn) and chlorophyll fluorescence after fruit removal (-fruit) in peach (Prunus persica (L.) Batsch cv. 'Zaojiubao') trees were investigated. The stepwise energy flow through photosystem II (PSII) at the reaction center (RC) was analyzed with quantitative analyses of fluorescence transient, also called JIP-test. We found that Pn was significantly lower and closely correlated to the leaf stomatal conductance (Gs) of -fruit trees than that of fruit retained (+fruit) trees. Leaf temperature (Tleaf) of -fruit trees was remarkably higher than that of +fruit trees. Day-time-period assays of chlorophyll (Chl) fluorescence revealed that, in the leaves of -fruit trees, the fluorescence parameters, such as NPQ (non-photochemical quenching coefficient) and ΦD0 (maximum quantum yield of non-photochemical de-excitation), decreased in the morning and recovered to the normal level in the afternoon, whereas other parameters, such as ΦE0 (quantum yield for electron transport at t = 0), Ψ0 (probability that a trapped exciton moves an electron to QA pool), F0 (minimum fluorescence, when all PSII RCs are open) and Wk (relative variable fluorescence at 300 μs of the chlorophyll fluorescence transient), did not. These results suggest that OEC complex and QA pool were irreversibly affected by low sink demand, whereas light harvest antenna and PSII potential efficiency retained a strong ability to recover.
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Affiliation(s)
- Jie-Shan Cheng
- The Engineering Research Institute of Agriculture and Forestry, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China; The Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in the Universities of Shandong (Ludong University), Institute for Advanced Study of Coastal Ecology, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China
| | - Wei Duan
- Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan Road, Beijing, 100093, China
| | - Xiao-Li Tang
- The Engineering Research Institute of Agriculture and Forestry, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China; The Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in the Universities of Shandong (Ludong University), Institute for Advanced Study of Coastal Ecology, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China
| | - Yao-Guang Zhang
- College of Art, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China
| | - Bei Li
- The Engineering Research Institute of Agriculture and Forestry, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China; The Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in the Universities of Shandong (Ludong University), Institute for Advanced Study of Coastal Ecology, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China
| | - Yi-Ju Wang
- Yantai Academy of Agricultural Science, 26 Gangchengxi Road, Yantai, 265500, China
| | - Chun-Xiang Yang
- Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan Road, Beijing, 100093, China
| | - Zhi-Zhong Song
- The Engineering Research Institute of Agriculture and Forestry, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China; The Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in the Universities of Shandong (Ludong University), Institute for Advanced Study of Coastal Ecology, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China
| | - Li-Jun Wang
- Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan Road, Beijing, 100093, China
| | - Jun Yang
- Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan Road, Beijing, 100093, China
| | - Yan Yu
- Yantai Institute, China Agricultural University, 2006 Binhaizhong Road, Yantai, 264670, China
| | - Xiu-Bo Sun
- Yantai Institute, China Agricultural University, 2006 Binhaizhong Road, Yantai, 264670, China
| | - Mei-Xia Liang
- The Engineering Research Institute of Agriculture and Forestry, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China; The Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in the Universities of Shandong (Ludong University), Institute for Advanced Study of Coastal Ecology, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China; College of Agriculture, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China
| | - Zhen-Chang Liang
- Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan Road, Beijing, 100093, China.
| | - Hong-Xia Zhang
- The Engineering Research Institute of Agriculture and Forestry, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China; The Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in the Universities of Shandong (Ludong University), Institute for Advanced Study of Coastal Ecology, Ludong University, 186 Hongqizhong Road, Yantai, 264025, China.
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Petersen J, Rredhi A, Szyttenholm J, Oldemeyer S, Kottke T, Mittag M. The World of Algae Reveals a Broad Variety of Cryptochrome Properties and Functions. FRONTIERS IN PLANT SCIENCE 2021; 12:766509. [PMID: 34790217 PMCID: PMC8591175 DOI: 10.3389/fpls.2021.766509] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Accepted: 10/11/2021] [Indexed: 05/25/2023]
Abstract
Algae are photosynthetic eukaryotic (micro-)organisms, lacking roots, leaves, and other organs that are typical for land plants. They live in freshwater, marine, or terrestrial habitats. Together with the cyanobacteria they contribute to about half of global carbon fixation. As primary producers, they are at the basis of many food webs and they are involved in biogeochemical processes. Algae are evolutionarily distinct and are derived either by primary (e.g., green and red algae) or secondary endosymbiosis (e.g., diatoms, dinoflagellates, and brown algae). Light is a key abiotic factor needed to maintain the fitness of algae as it delivers energy for photosynthesis, regulates algal cell- and life cycles, and entrains their biological clocks. However, excess light can also be harmful, especially in the ultraviolet range. Among the variety of receptors perceiving light information, the cryptochromes originally evolved as UV-A and blue-light receptors and have been found in all studied algal genomes so far. Yet, the classification, biophysical properties, wavelength range of absorbance, and biological functions of cryptochromes are remarkably diverse among algal species, especially when compared to cryptochromes from land plants or animals.
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Affiliation(s)
- Jan Petersen
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, Germany
| | - Anxhela Rredhi
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, Germany
| | - Julie Szyttenholm
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, Germany
| | - Sabine Oldemeyer
- Experimental Molecular Biophysics, Department of Physics, Freie Universität Berlin, Berlin, Germany
| | - Tilman Kottke
- Department of Chemistry, Bielefeld University, Bielefeld, Germany
- Biophysical Chemistry and Diagnostics, Medical School OWL, Bielefeld University, Bielefeld, Germany
| | - Maria Mittag
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, Germany
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Identification of a Novel Mutation Exacerbated the PSI Photoinhibition in pgr5/ pgrl1 Mutants; Caution for Overestimation of the Phenotypes in Arabidopsis pgr5-1 Mutant. Cells 2021; 10:cells10112884. [PMID: 34831107 PMCID: PMC8616342 DOI: 10.3390/cells10112884] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 10/20/2021] [Accepted: 10/22/2021] [Indexed: 12/12/2022] Open
Abstract
PSI photoinhibition is usually avoided through P700 oxidation. Without this protective mechanism, excess light represents a potentially lethal threat to plants. PGR5 is suggested to be a major component of cyclic electron transport around PSI and is important for P700 oxidation in angiosperms. The known Arabidopsis PGR5 deficient mutant, pgr5-1, is incapable of P700 oxidation regulation and has been used in numerous photosynthetic studies. However, here it was revealed that pgr5-1 was a double mutant with exaggerated PSI photoinhibition. pgr5-1 significantly reduced growth compared to the newly isolated PGR5 deficient mutant, pgr5hope1. The introduction of PGR5 into pgr5-1 restored P700 oxidation regulation, but remained a pale-green phenotype, indicating that pgr5-1 had additional mutations. Both pgr5-1 and pgr5hope1 tended to cause PSI photoinhibition by excess light, but pgr5-1 exhibited an enhanced reduction in PSI activity. Introducing AT2G17240, a candidate gene for the second mutation into pgr5-1 restored the pale-green phenotype and partially restored PSI activity. Furthermore, a deficient mutant of PGRL1 complexing with PGR5 significantly reduced PSI activity in the double-deficient mutant with AT2G17240. From these results, we concluded that AT2G17240, named PSI photoprotection 1 (PTP1), played a role in PSI photoprotection, especially in PGR5/PGRL1 deficient mutants.
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57
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Cheong MS, Choe H, Jeong MS, Yoon YE, Jung HS, Lee YB. Different Inhibitory Effects of Erythromycin and Chlortetracycline on Early Growth of Brassica campestris Seedlings. Antibiotics (Basel) 2021; 10:antibiotics10101273. [PMID: 34680853 PMCID: PMC8532913 DOI: 10.3390/antibiotics10101273] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 10/15/2021] [Accepted: 10/17/2021] [Indexed: 01/14/2023] Open
Abstract
Veterinary antibiotics, including erythromycin (Ery) and chlortetracycline (CTC), are often detected in agricultural land. Although these contaminants affect plant growth and development, their effects on crops remain elusive. In this study, the effects of Ery and CTC on plant growth were investigated and compared by analyzing transcript abundance in Brassica campestris seedlings. Treatment with Ery and/or CTC reduced chlorophyll content in leaves and photosynthetic efficiency. Examination of the chloroplast ultrastructure revealed the presence of abnormally shaped plastids in response to Ery and CTC treatments. The antibiotics produced similar phenotypes of lower accumulation of photosynthetic genes, including RBCL and LHCB1.1. Analysis of the transcript levels revealed that Ery and CTC differentially down-regulated genes involved in the tetrapyrrole biosynthetic pathway and primary root growth. In the presence of Ery and CTC, chloroplasts were undeveloped and photosynthesis efficiency was reduced. These results suggest that both Ery and CTC individually affect gene expression and influence plant physiological activity, independently of one another.
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Affiliation(s)
- Mi Sun Cheong
- Institute of Agriculture and Life Science (IALS), Gyeongsang National University, Jinju 52828, Korea;
| | - Hyeonji Choe
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju 52828, Korea; (H.C.); (Y.-E.Y.)
| | - Myeong Seon Jeong
- Department of Biochemistry, Kangwon National University, Chuncheon 24341, Korea; (M.S.J.); (H.S.J.)
- Chuncheon Center, Korea Basic Science Institute (KBSI), Chuncheon 24341, Korea
| | - Young-Eun Yoon
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju 52828, Korea; (H.C.); (Y.-E.Y.)
| | - Hyun Suk Jung
- Department of Biochemistry, Kangwon National University, Chuncheon 24341, Korea; (M.S.J.); (H.S.J.)
| | - Yong Bok Lee
- Institute of Agriculture and Life Science (IALS), Gyeongsang National University, Jinju 52828, Korea;
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju 52828, Korea; (H.C.); (Y.-E.Y.)
- Correspondence: ; Tel.: +82-55-772-1967
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Mellon M, Storti M, Vera-Vives AM, Kramer DM, Alboresi A, Morosinotto T. Inactivation of mitochondrial complex I stimulates chloroplast ATPase in Physcomitrium patens. PLANT PHYSIOLOGY 2021; 187:931-946. [PMID: 34608952 PMCID: PMC8491079 DOI: 10.1093/plphys/kiab276] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 05/18/2021] [Indexed: 06/11/2023]
Abstract
Light is the ultimate source of energy for photosynthetic organisms, but respiration is fundamental for supporting metabolism during the night or in heterotrophic tissues. In this work, we isolated Physcomitrella (Physcomitrium patens) plants with altered respiration by inactivating Complex I (CI) of the mitochondrial electron transport chain by independently targeting on two essential subunits. Inactivation of CI caused a strong growth impairment even in fully autotrophic conditions in tissues where all cells are photosynthetically active, demonstrating that respiration is essential for photosynthesis. CI mutants showed alterations in the stoichiometry of respiratory complexes while the composition of photosynthetic apparatus was substantially unaffected. CI mutants showed altered photosynthesis with high activity of both Photosystems I and II, likely the result of high chloroplast ATPase activity that led to smaller ΔpH formation across thylakoid membranes, decreasing photosynthetic control on cytochrome b6f in CI mutants. These results demonstrate that alteration of respiratory activity directly impacts photosynthesis in P. patens and that metabolic interaction between organelles is essential in their ability to use light energy for growth.
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Affiliation(s)
- Marco Mellon
- Department of Biology, University of Padova, 35121 Padova, Italy
| | - Mattia Storti
- Department of Biology, University of Padova, 35121 Padova, Italy
| | | | - David M. Kramer
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA
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Wang Y, Jiang Z, Lai Z, Yuan H, Zhang X, Jia Y, Zhang X. The self-adaption capability of microalgal biofilm under different light intensities: Photosynthetic parameters and biofilm microstructures. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102383] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Zhang D, Xu J, Beer S, Beardall J, Zhou C, Gao K. Increased CO 2 Relevant to Future Ocean Acidification Alleviates the Sensitivity of a Red Macroalgae to Solar Ultraviolet Irradiance by Modulating the Synergy Between Photosystems II and I. FRONTIERS IN PLANT SCIENCE 2021; 12:726538. [PMID: 34603355 PMCID: PMC8481898 DOI: 10.3389/fpls.2021.726538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
While intertidal macroalgae are exposed to drastic changes in solar photosynthetically active radiation (PAR) and ultraviolet radiation (UVR) during a diel cycle, and to ocean acidification (OA) associated with increasing CO2 levels, little is known about their photosynthetic performance under the combined influences of these drivers. In this work, we examined the photoprotective strategies controlling electron flow through photosystems II (PSII) and photosystem I (PSI) in response to solar radiation with or without UVR and an elevated CO2 concentration in the intertidal, commercially important, red macroalgae Pyropia (previously Porphyra) yezoensis. By using chlorophyll fluorescence techniques, we found that high levels of PAR alone induced photoinhibition of the inter-photosystem electron transport carriers, as evidenced by the increase of chlorophyll fluorescence in both the J- and I-steps of Kautsky curves. In the presence of UVR, photoinduced inhibition was mainly identified in the O2-evolving complex (OEC) and PSII, as evidenced by a significant increase in the variable fluorescence at the K-step (F k) of Kautsky curves relative to the amplitude of F J-F o (Wk) and a decrease of the maximum quantum yield of PSII (F v/F m). Such inhibition appeared to ameliorate the function of downstream electron acceptors, protecting PSI from over-reduction. In turn, the stable PSI activity increased the efficiency of cyclic electron transport (CET) around PSI, dissipating excess energy and supplying ATP for CO2 assimilation. When the algal thalli were grown under increased CO2 and OA conditions, the CET activity became further enhanced, which maintained the OEC stability and thus markedly alleviating the UVR-induced photoinhibition. In conclusion, the well-established coordination between PSII and PSI endows P. yezoensis with a highly efficient photochemical performance in response to UVR, especially under the scenario of future increased CO2 levels and OA.
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Affiliation(s)
- Di Zhang
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Juntian Xu
- Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang, China
| | - Sven Beer
- Department of Plant Sciences and Food Security, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - John Beardall
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
- School of Biological Sciences, Monash University, Clayton, VIC, Australia
| | - Cong Zhou
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Kunshan Gao
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
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Physiological and Genetic Analysis of Leaves from the Resprouters of an Old Ginkgo biloba Tree. FORESTS 2021. [DOI: 10.3390/f12091255] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Ginkgo biloba is a well-known long-lived tree with important economical, ornamental and research value. New stems often resprout naturally from the trunk or roots of old trees to realize rejuvenation. However, the physiological and molecular mechanisms that underlie the resprouting from old trees are still unknown. In this study, we investigated a 544-year-old female ginkgo tree with vigorous resprouters along the trunk base in Yangzhou, China. We compared the morphological and physiological traits of leaves between resprouters (SL) and old branches (OL) and found a significantly higher thickness, fresh weight, and water content in SL. In particular, the depth and number of leaf lobes were dramatically increased in SL, suggesting the juvenile characteristics of sprouters in old ginkgo trees. Transcriptome data showed that the expression of genes related to photosynthetic capacity, the auxin signaling pathway, and stress-associated hormones was upregulated in SL. Importantly, levels of the most important secondary metabolites, including kaempferol, isorhamnetin, ginkgolide A, ginkgolide B, and ginkgolide C, were significantly higher in SL. We also identified high expression of key genes in SL, such as PAL and FLS, which are involved in flavonoid synthesis, and GGPS, which is involved in the synthesis of terpene lactones. These findings reveal the distinct physiological and molecular characteristics as well as secondary metabolite synthesis in leaves of resprouting stems in old ginkgo trees, providing new insight into rejuvenation physiology in old tree aging.
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Geisler K, Scaife MA, Mordaka PM, Holzer A, Tomsett EV, Mehrshahi P, Mendoza Ochoa GI, Smith AG. Exploring the Impact of Terminators on Transgene Expression in Chlamydomonas reinhardtii with a Synthetic Biology Approach. Life (Basel) 2021; 11:life11090964. [PMID: 34575113 PMCID: PMC8471596 DOI: 10.3390/life11090964] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 09/03/2021] [Accepted: 09/09/2021] [Indexed: 01/03/2023] Open
Abstract
Chlamydomonas reinhardtii has many attractive features for use as a model organism for both fundamental studies and as a biotechnological platform. Nonetheless, despite the many molecular tools and resources that have been developed, there are challenges for its successful engineering, in particular to obtain reproducible and high levels of transgene expression. Here we describe a synthetic biology approach to screen several hundred independent transformants using standardised parts to explore different parameters that might affect transgene expression. We focused on terminators and, using a standardised workflow and quantitative outputs, tested 9 different elements representing three different size classes of native terminators to determine their ability to support high level expression of a GFP reporter gene. We found that the optimal size reflected the median size of element found in the C. reinhardtii genome. The behaviour of the terminator parts was similar with different promoters, in different host strains and with different transgenes. This approach is applicable to the systematic testing of other genetic elements, facilitating comparison to determine optimal transgene design.
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Affiliation(s)
- Katrin Geisler
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
| | - Mark A. Scaife
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
- Mara Renewables Corporation, Dartmouth, NS B2Y 4T6, Canada
| | - Paweł M. Mordaka
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
| | - Andre Holzer
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
| | - Eleanor V. Tomsett
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
| | - Payam Mehrshahi
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
| | - Gonzalo I. Mendoza Ochoa
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
| | - Alison G. Smith
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; (K.G.); (M.A.S.); (P.M.M.); (A.H.); (E.V.T.); (P.M.); (G.I.M.O.)
- Correspondence: ; Tel.: +44-1223-333952
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Alvarez-Fernandez R, Penfold CA, Galvez-Valdivieso G, Exposito-Rodriguez M, Stallard EJ, Bowden L, Moore JD, Mead A, Davey PA, Matthews JSA, Beynon J, Buchanan-Wollaston V, Wild DL, Lawson T, Bechtold U, Denby KJ, Mullineaux PM. Time-series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 107:1363-1386. [PMID: 34160110 DOI: 10.1111/tpj.15384] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 06/14/2021] [Indexed: 05/22/2023]
Abstract
The photosynthetic capacity of mature leaves increases after several days' exposure to constant or intermittent episodes of high light (HL) and is manifested primarily as changes in chloroplast physiology. How this chloroplast-level acclimation to HL is initiated and controlled is unknown. From expanded Arabidopsis leaves, we determined HL-dependent changes in transcript abundance of 3844 genes in a 0-6 h time-series transcriptomics experiment. It was hypothesized that among such genes were those that contribute to the initiation of HL acclimation. By focusing on differentially expressed transcription (co-)factor genes and applying dynamic statistical modelling to the temporal transcriptomics data, a regulatory network of 47 predominantly photoreceptor-regulated transcription (co-)factor genes was inferred. The most connected gene in this network was B-BOX DOMAIN CONTAINING PROTEIN32 (BBX32). Plants overexpressing BBX32 were strongly impaired in acclimation to HL and displayed perturbed expression of photosynthesis-associated genes under LL and after exposure to HL. These observations led to demonstrating that as well as regulation of chloroplast-level acclimation by BBX32, CRYPTOCHROME1, LONG HYPOCOTYL5, CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA-105 are important. In addition, the BBX32-centric gene regulatory network provides a view of the transcriptional control of acclimation in mature leaves distinct from other photoreceptor-regulated processes, such as seedling photomorphogenesis.
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Affiliation(s)
| | | | | | | | - Ellie J Stallard
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Laura Bowden
- School of Life Sciences, Warwick University, Coventry, CV4 7AL, UK
| | - Jonathan D Moore
- School of Life Sciences, Warwick University, Coventry, CV4 7AL, UK
| | - Andrew Mead
- School of Life Sciences, Warwick University, Coventry, CV4 7AL, UK
| | - Phillip A Davey
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Jack S A Matthews
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Jim Beynon
- Department of Statistics, Warwick University, Coventry, CV4 7AL, UK
| | | | - David L Wild
- Department of Statistics, Warwick University, Coventry, CV4 7AL, UK
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Ulrike Bechtold
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Katherine J Denby
- Centre for Novel Agricultural Products (CNAP), Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Philip M Mullineaux
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
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64
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Zhao W, Yang XQ, Zhang QS, Tan Y, Liu Z, Ma MY, Wang MX, Xu B. Photoinactivation of the oxygen-evolving complex regulates the photosynthetic strategy of the seagrass Zostera marina. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2021; 222:112259. [PMID: 34274827 DOI: 10.1016/j.jphotobiol.2021.112259] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 06/09/2021] [Accepted: 07/10/2021] [Indexed: 11/27/2022]
Abstract
Zostera marina, a widespread seagrass, evolved from a freshwater ancestor of terrestrial monocots and successfully transitioned into a completely submerged seagrass. We found that its oxygen-evolving complex (OEC) was partially inactivated in response to light exposure, as evidenced by both the increment of the relative variable fluorescence at the K-step and the downregulation of the OEC genes and proteins. This photosynthetic regulation was further addressed at both proteome and physiology levels by an in vivo study. The unchanged content of the ΔpH sensor PsbS protein and the non-photochemical quenching induction dynamics, described by a single exponential function, verified the absence of the fast qE component. Contents and activities of chlororespiration, Mehler reaction, malic acid synthesis, and photorespiration key enzymes were not upregulated, suggesting that alternative electron flows remained unactivated. Furthermore, neither significant production of singlet oxygen nor increment of total antioxidative capacity indicated that reactive oxygen species were not produced during light exposure. In summary, these low electron consumptions may allow Z. marina to efficiently use the limited electrons caused by partial OEC photoinactivation to maintain a normal carbon assimilation level.
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Affiliation(s)
- Wei Zhao
- Ocean School, Yantai University, Yantai 264005, PR China
| | - Xiao-Qi Yang
- Ocean School, Yantai University, Yantai 264005, PR China
| | | | - Ying Tan
- Ocean School, Yantai University, Yantai 264005, PR China
| | - Zhe Liu
- Ocean School, Yantai University, Yantai 264005, PR China
| | - Ming-Yu Ma
- Ocean School, Yantai University, Yantai 264005, PR China
| | - Meng-Xin Wang
- Ocean School, Yantai University, Yantai 264005, PR China
| | - Bin Xu
- Ocean School, Yantai University, Yantai 264005, PR China
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65
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Lazare S, Bechar D, Garbowicz K, Fernie AR, Brotman Y, Zaccai M. When vegetation indicates reproduction: The affinity between leaf morphology and flowering commitment in the lily meristem. PHYSIOLOGIA PLANTARUM 2021; 172:2022-2033. [PMID: 33860540 DOI: 10.1111/ppl.13426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2021] [Accepted: 04/08/2021] [Indexed: 06/12/2023]
Abstract
At the reproductive stage, lily plants bear two morphological types of mature leaves, one at the lower and one at the upper part of the stem. At the vegetative stage, all the leaves are similar to each other and to the reproductive plant's lower leaves. This heterophylly has not yet been explored. In this study, we show that it is not a result of the plant's age but rather an outcome of floral induction. The induction appears as an on-going process, during which the meristem still produces leaves but progressively becomes committed to reproduction. This intermediate period lasts until the ultimate switch to flower primordia occurs. The leaves produced during floral induction, termed here as "inductive," appear at the upper part of the stem. Besides their typical higher stomata density, these leaves have a poly-layered palisade mesophyll, whose cells exhibit a unique morphology and contain more chlorophyll than leaves of vegetative plants. These leaves display higher carbon assimilation, soluble sugar production, and chloroplast-lipid accumulation. Accordingly, genes associated with stomata, chloroplast, and photosynthesis are upregulated in these leaves. Our results were obtained when floral induction was achieved either by vernalization or photoperiod signals, ruling out a mere environmental effect. We suggest that lily plants prepare themselves for the high-energy-demanding bloom by producing leaves with enhanced photosynthetic capacity, leading to an increase in soluble sugars. These novel findings introduce an adjacent affinity between photosynthesis and flowering and provide a nondestructive tool for identifying the plant's developmental stage-vegetative or reproductive.
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Affiliation(s)
- Silit Lazare
- Department of Life Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel
- Gilat Research Center, Agricultural Research Organization, Gilat, Israel
| | - Daniel Bechar
- Department of Life Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel
| | | | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam, Germany
| | - Yariv Brotman
- Department of Life Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel
| | - Michele Zaccai
- Department of Life Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel
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66
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Chowdhury M, Kiraga S, Islam MN, Ali M, Reza MN, Lee WH, Chung SO. Effects of Temperature, Relative Humidity, and Carbon Dioxide Concentration on Growth and Glucosinolate Content of Kale Grown in a Plant Factory. Foods 2021; 10:foods10071524. [PMID: 34359392 PMCID: PMC8306225 DOI: 10.3390/foods10071524] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Revised: 06/29/2021] [Accepted: 06/29/2021] [Indexed: 12/11/2022] Open
Abstract
The growth of plants and their glucosinolate content largely depend on the cultivation environment; however, there are limited reports on the optimization of ambient environmental factors for kale grown in plant factories. This study was conducted to investigate the effects of temperature, relative humidity, and the carbon dioxide (CO2) concentration on kale growth and glucosinolate content in different growth stages of cultivation in a plant factory. Kale was grown under different temperatures (14, 17, 20, 23, and 26 °C), relative humidities (45, 55, 65, 75, and 85%), and CO2 concentrations (400, 700, 1000, 1300, and 1600 ppm) in a plant factory. Two and four weeks after transplantation, leaf samples were collected to evaluate the physical growth and glucosinolate contents. The statistical significance of the treatment effects was determined by two-way analysis of variance, and Duncan’s multiple range test was used to compare the means. A correlation matrix was constructed to show possible linear trends among the dependent variables. The observed optimal temperature, relative humidity, and CO2 range for growth (20–23 °C, 85%, and 700–1000 ppm) and total glucosinolate content (14–17 °C, 55–75%, and 1300–1600 ppm) were different. Furthermore, the glucosinolate content in kale decreased with the increase of temperature and relative humidity levels, and increased with the increase of CO2 concentration. Most of the physical growth variables showed strong positive correlations with each other but negative correlations with glucosinolate components. The findings of this study could be used by growers to maintain optimum environmental conditions for the better growth and production of glucosinolate-rich kale leaves in protected cultivation facilities.
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Affiliation(s)
- Milon Chowdhury
- Department of Agricultural Machinery Engineering, Graduate School, Chungnam National University, Daejeon 34134, Korea; (M.C.); (M.N.I.); (M.A.); (M.N.R.); (W.-H.L.)
- Department of Smart Agricultural Systems, Graduate School, Chungnam National University, Daejeon 34134, Korea;
| | - Shafik Kiraga
- Department of Smart Agricultural Systems, Graduate School, Chungnam National University, Daejeon 34134, Korea;
| | - Md Nafiul Islam
- Department of Agricultural Machinery Engineering, Graduate School, Chungnam National University, Daejeon 34134, Korea; (M.C.); (M.N.I.); (M.A.); (M.N.R.); (W.-H.L.)
- Department of Smart Agricultural Systems, Graduate School, Chungnam National University, Daejeon 34134, Korea;
| | - Mohammod Ali
- Department of Agricultural Machinery Engineering, Graduate School, Chungnam National University, Daejeon 34134, Korea; (M.C.); (M.N.I.); (M.A.); (M.N.R.); (W.-H.L.)
| | - Md Nasim Reza
- Department of Agricultural Machinery Engineering, Graduate School, Chungnam National University, Daejeon 34134, Korea; (M.C.); (M.N.I.); (M.A.); (M.N.R.); (W.-H.L.)
- Department of Smart Agricultural Systems, Graduate School, Chungnam National University, Daejeon 34134, Korea;
| | - Wang-Hee Lee
- Department of Agricultural Machinery Engineering, Graduate School, Chungnam National University, Daejeon 34134, Korea; (M.C.); (M.N.I.); (M.A.); (M.N.R.); (W.-H.L.)
- Department of Smart Agricultural Systems, Graduate School, Chungnam National University, Daejeon 34134, Korea;
| | - Sun-Ok Chung
- Department of Agricultural Machinery Engineering, Graduate School, Chungnam National University, Daejeon 34134, Korea; (M.C.); (M.N.I.); (M.A.); (M.N.R.); (W.-H.L.)
- Department of Smart Agricultural Systems, Graduate School, Chungnam National University, Daejeon 34134, Korea;
- Correspondence: ; Tel.: +82-42-821-6712
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67
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Bo DD, Magneschi L, Bedhomme M, Billey E, Deragon E, Storti M, Menneteau M, Richard C, Rak C, Lapeyre M, Lembrouk M, Conte M, Gros V, Tourcier G, Giustini C, Falconet D, Curien G, Allorent G, Petroutsos D, Laeuffer F, Fourage L, Jouhet J, Maréchal E, Finazzi G, Collin S. Consequences of Mixotrophy on Cell Energetic Metabolism in Microchloropsis gaditana Revealed by Genetic Engineering and Metabolic Approaches. FRONTIERS IN PLANT SCIENCE 2021; 12:628684. [PMID: 34113360 PMCID: PMC8185151 DOI: 10.3389/fpls.2021.628684] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 03/31/2021] [Indexed: 06/12/2023]
Abstract
Algae belonging to the Microchloropsis genus are promising organisms for biotech purposes, being able to accumulate large amounts of lipid reserves. These organisms adapt to different trophic conditions, thriving in strict photoautotrophic conditions, as well as in the concomitant presence of light plus reduced external carbon as energy sources (mixotrophy). In this work, we investigated the mixotrophic responses of Microchloropsis gaditana (formerly Nannochloropsis gaditana). Using the Biolog growth test, in which cells are loaded into multiwell plates coated with different organic compounds, we could not find a suitable substrate for Microchloropsis mixotrophy. By contrast, addition of the Lysogeny broth (LB) to the inorganic growth medium had a benefit on growth, enhancing respiratory activity at the expense of photosynthetic performances. To further dissect the role of respiration in Microchloropsis mixotrophy, we focused on the mitochondrial alternative oxidase (AOX), a protein involved in energy management in other algae prospering in mixotrophy. Knocking-out the AOX1 gene by transcription activator-like effector nuclease (TALE-N) led to the loss of capacity to implement growth upon addition of LB supporting the hypothesis that the effect of this medium was related to a provision of reduced carbon. We conclude that mixotrophic growth in Microchloropsis is dominated by respiratory rather than by photosynthetic energetic metabolism and discuss the possible reasons for this behavior in relationship with fatty acid breakdown via β-oxidation in this oleaginous alga.
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Affiliation(s)
- Davide Dal Bo
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Leonardo Magneschi
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Mariette Bedhomme
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Elodie Billey
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
- Total Refining Chemicals, Tour Coupole, Paris La Défense, France
| | - Etienne Deragon
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Mattia Storti
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Mathilde Menneteau
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Christelle Richard
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Camille Rak
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Morgane Lapeyre
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Mehdi Lembrouk
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Melissa Conte
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Valérie Gros
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Guillaume Tourcier
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Cécile Giustini
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Denis Falconet
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Gilles Curien
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Guillaume Allorent
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Dimitris Petroutsos
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | | | - Laurent Fourage
- Total Refining Chemicals, Tour Coupole, Paris La Défense, France
| | - Juliette Jouhet
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Eric Maréchal
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Giovanni Finazzi
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
| | - Séverine Collin
- Université Grenoble Alpes (UGA), Centre National Recherche Scientifique (CNRS), Commissariat Energie Atomique, Energies Alternatives (CEA), Institut National Recherche Agriculture, Alimentation, Environnement (INRAE), Interdisciplinary Research Institute of Grenoble, IRIG-Laboratoire de Physiologie Cellulaire et Végétale, Grenoble, France
- Total Refining Chemicals, Tour Coupole, Paris La Défense, France
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Iwasaki K, Evenhuis C, Tamburic B, Kuzhiumparambil U, O'Connor W, Ralph P, Szabó M. Improving light and CO2 availability to enhance the growth rate of the diatom, Chaetoceros muelleri. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102234] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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69
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Wang P, Grimm B. Connecting Chlorophyll Metabolism with Accumulation of the Photosynthetic Apparatus. TRENDS IN PLANT SCIENCE 2021; 26:484-495. [PMID: 33422426 DOI: 10.1016/j.tplants.2020.12.005] [Citation(s) in RCA: 77] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 11/20/2020] [Accepted: 12/09/2020] [Indexed: 05/14/2023]
Abstract
Chlorophyll (Chl) is indispensable for photosynthesis. In association with Chl-binding proteins (CBPs), it is responsible for light absorption, excitation energy transfer, and charge separation within the photosynthetic complexes. By contrast, photoexcitation of free Chl and its metabolic intermediates generates hazardous reactive oxygen species (ROS). While antagonistic activities of Chl synthesis and catabolism have been mostly elucidated, the tight synchronization of these metabolic activities with the formation and dismantling of the photosynthetic complexes is poorly understood. Recently, a set of auxiliary factors were identified to adjust metabolic activities and provide accurate amounts of Chl for pigment-protein complexes. Here, we review current knowledge of post-translational coordination of Chl formation, breakdown, and turnover with the assembly and disassembly of various CBPs and highlight future research perspectives.
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Affiliation(s)
- Peng Wang
- Humboldt-Universität zu Berlin, Institute of Biology/Plant Physiology, Philippstraße 13 Building 12, 10115 Berlin, Germany.
| | - Bernhard Grimm
- Humboldt-Universität zu Berlin, Institute of Biology/Plant Physiology, Philippstraße 13 Building 12, 10115 Berlin, Germany.
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70
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Gasulla F, del Campo EM, Casano LM, Guéra A. Advances in Understanding of Desiccation Tolerance of Lichens and Lichen-Forming Algae. PLANTS (BASEL, SWITZERLAND) 2021; 10:807. [PMID: 33923980 PMCID: PMC8073698 DOI: 10.3390/plants10040807] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 04/14/2021] [Accepted: 04/16/2021] [Indexed: 12/11/2022]
Abstract
Lichens are symbiotic associations (holobionts) established between fungi (mycobionts) and certain groups of cyanobacteria or unicellular green algae (photobionts). This symbiotic association has been essential in the colonization of terrestrial dry habitats. Lichens possess key mechanisms involved in desiccation tolerance (DT) that are constitutively present such as high amounts of polyols, LEA proteins, HSPs, a powerful antioxidant system, thylakoidal oligogalactolipids, etc. This strategy allows them to be always ready to survive drastic changes in their water content. However, several studies indicate that at least some protective mechanisms require a minimal time to be induced, such as the induction of the antioxidant system, the activation of non-photochemical quenching including the de-epoxidation of violaxanthin to zeaxanthin, lipid membrane remodeling, changes in the proportions of polyols, ultrastructural changes, marked polysaccharide remodeling of the cell wall, etc. Although DT in lichens is achieved mainly through constitutive mechanisms, the induction of protection mechanisms might allow them to face desiccation stress in a better condition. The proportion and relevance of constitutive and inducible DT mechanisms seem to be related to the ecology at which lichens are adapted to.
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Affiliation(s)
- Francisco Gasulla
- Department of Life Sciences, Universidad de Alcalá, Alcalá de Henares, 28802 Madrid, Spain; (E.M.d.C.); (L.M.C.)
| | | | | | - Alfredo Guéra
- Department of Life Sciences, Universidad de Alcalá, Alcalá de Henares, 28802 Madrid, Spain; (E.M.d.C.); (L.M.C.)
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71
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Bause M, Bereau T. Reweighting non-equilibrium steady-state dynamics along collective variables. J Chem Phys 2021; 154:134105. [PMID: 33832234 DOI: 10.1063/5.0042972] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
Computer simulations generate microscopic trajectories of complex systems at a single thermodynamic state point. We recently introduced a Maximum Caliber (MaxCal) approach for dynamical reweighting. Our approach mapped these trajectories to a Markovian description on the configurational coordinates and reweighted path probabilities as a function of external forces. Trajectory probabilities can be dynamically reweighted both from and to equilibrium or non-equilibrium steady states. As the system's dimensionality increases, an exhaustive description of the microtrajectories becomes prohibitive-even with a Markovian assumption. Instead, we reduce the dimensionality of the configurational space to collective variables (CVs). Going from configurational to CV space, we define local entropy productions derived from configurationally averaged mean forces. The entropy production is shown to be a suitable constraint on MaxCal for non-equilibrium steady states expressed as a function of CVs. We test the reweighting procedure on two systems: a particle subject to a two-dimensional potential and a coarse-grained peptide. Our CV-based MaxCal approach expands dynamical reweighting to larger systems, for both static and dynamical properties, and across a large range of driving forces.
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Affiliation(s)
- Marius Bause
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany
| | - Tristan Bereau
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany
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72
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Purification and Analysis of Chloroplast RNAs in Arabidopsis. Methods Mol Biol 2021. [PMID: 32797456 DOI: 10.1007/978-1-0716-0743-5_10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
Chloroplasts are essential semiautonomous plant organelles responsible for photosynthesis, which generates sugars and oxygen vital for the entire biosphere. Additionally, chloroplasts regulate energy production, metabolite synthesis, and stress responses in plants and algae. Chloroplasts possess a notably complex RNA metabolism that includes RNA processing, editing, splicing, and regulation by various RNA-binding proteins. Highly purified chloroplasts, free of nuclear/cytoplasmic contaminants are desirable when studying chloroplast RNA metabolism. Here, we describe an efficient protocol to obtain highly purified chloroplasts for RNA analysis.
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73
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New insights into the response of maize to fluctuations in the light environment. Mol Genet Genomics 2021; 296:615-629. [PMID: 33630129 DOI: 10.1007/s00438-021-01761-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Accepted: 01/11/2021] [Indexed: 10/22/2022]
Abstract
Light is the most important environmental cue signaling the transition from skotomorphogenesis to photomorphogenesis, thus affecting plant development and metabolic activity. How the light response mechanisms of maize seedlings respond to fluctuations in the light environment has not been well characterized to date. In this study, we built a gene coexpression network from a dynamic transcriptomic map of maize seedlings exposed to different light environments. Coexpression analysis identified ten modules and multiple genes that closely correlate with photosynthesis and characterized hub genes associated with regulatory networks, duplication events, domestication and improvement. In addition, we identified that 38% of hub genes underwent duplication events, 74% of which are related to photosynthesis. Moreover, we captured the dynamic expression atlas of gene sets involved in the chloroplast photosynthetic apparatus and photosynthetic carbon assimilation in different light environments, which should help to elucidate the key mechanisms and regulatory networks that underlie photosynthesis in maize. Insights from this study provide a valuable resource to better understand the genetic mechanisms of the response to fluctuations in the light environment in maize.
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74
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Pipitone R, Eicke S, Pfister B, Glauser G, Falconet D, Uwizeye C, Pralon T, Zeeman SC, Kessler F, Demarsy E. A multifaceted analysis reveals two distinct phases of chloroplast biogenesis during de-etiolation in Arabidopsis. eLife 2021; 10:e62709. [PMID: 33629953 PMCID: PMC7906606 DOI: 10.7554/elife.62709] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 02/04/2021] [Indexed: 11/18/2022] Open
Abstract
Light triggers chloroplast differentiation whereby the etioplast transforms into a photosynthesizing chloroplast and the thylakoid rapidly emerges. However, the sequence of events during chloroplast differentiation remains poorly understood. Using Serial Block Face Scanning Electron Microscopy (SBF-SEM), we generated a series of chloroplast 3D reconstructions during differentiation, revealing chloroplast number and volume and the extent of envelope and thylakoid membrane surfaces. Furthermore, we used quantitative lipid and whole proteome data to complement the (ultra)structural data, providing a time-resolved, multi-dimensional description of chloroplast differentiation. This showed two distinct phases of chloroplast biogenesis: an initial photosynthesis-enabling 'Structure Establishment Phase' followed by a 'Chloroplast Proliferation Phase' during cell expansion. Moreover, these data detail thylakoid membrane expansion during de-etiolation at the seedling level and the relative contribution and differential regulation of proteins and lipids at each developmental stage. Altogether, we establish a roadmap for chloroplast differentiation, a critical process for plant photoautotrophic growth and survival.
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Affiliation(s)
- Rosa Pipitone
- Plant Physiology Laboratory, University of NeuchâtelNeuchâtelSwitzerland
| | - Simona Eicke
- Institute of Molecular Plant Biology, Department of Biology, ETH ZurichZurichSwitzerland
| | - Barbara Pfister
- Institute of Molecular Plant Biology, Department of Biology, ETH ZurichZurichSwitzerland
| | - Gaetan Glauser
- Neuchâtel Platform of Analytical Chemistry, University of NeuchâtelNeuchâtelSwitzerland
| | - Denis Falconet
- Université Grenoble Alpes, CNRS, CEA, INRAE, IRIG-DBSCI-LPCVGrenobleFrance
| | - Clarisse Uwizeye
- Université Grenoble Alpes, CNRS, CEA, INRAE, IRIG-DBSCI-LPCVGrenobleFrance
| | - Thibaut Pralon
- Plant Physiology Laboratory, University of NeuchâtelNeuchâtelSwitzerland
| | - Samuel C Zeeman
- Institute of Molecular Plant Biology, Department of Biology, ETH ZurichZurichSwitzerland
| | - Felix Kessler
- Plant Physiology Laboratory, University of NeuchâtelNeuchâtelSwitzerland
| | - Emilie Demarsy
- Plant Physiology Laboratory, University of NeuchâtelNeuchâtelSwitzerland
- Department of Botany and Plant Biology, University of GenevaGenevaSwitzerland
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No DH, Baek D, Lee SH, Cheong MS, Chun HJ, Park MS, Cho HM, Jin BJ, Lim LH, Lee YB, Shim SI, Chung JI, Kim MC. High-Temperature Conditions Promote Soybean Flowering through the Transcriptional Reprograming of Flowering Genes in the Photoperiod Pathway. Int J Mol Sci 2021; 22:1314. [PMID: 33525667 PMCID: PMC7865498 DOI: 10.3390/ijms22031314] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 01/22/2021] [Accepted: 01/26/2021] [Indexed: 11/17/2022] Open
Abstract
Global warming has an impact on crop growth and development. Flowering time is particularly sensitive to environmental factors such as day length and temperature. In this study, we investigated the effects of global warming on flowering using an open-top Climatron chamber, which has a higher temperature and CO2 concentration than in the field. Two different soybean cultivars, Williams 82 and IT153414, which exhibited different flowering times, were promoted flowering in the open-top Climatron chamber than in the field. We more specifically examined the expression patterns of soybean flowering genes on the molecular level under high-temperature conditions. The elevated temperature induced the expression of soybean floral activators, GmFT2a and GmFT5a as well as a set of GmCOL genes. In contrast, it suppressed floral repressors, E1 and E2 homologs. Moreover, high-temperature conditions affected the expression of these flowering genes in a day length-independent manner. Taken together, our data suggest that soybean plants properly respond and adapt to changing environments by modulating the expression of a set of flowering genes in the photoperiod pathway for the successful production of seeds and offspring.
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Affiliation(s)
- Dong Hyeon No
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.H.N.); (S.H.L.); (H.M.C.); (B.J.J.); (L.H.L.); (Y.B.L.)
| | - Dongwon Baek
- Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.B.); (M.S.P.)
| | - Su Hyeon Lee
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.H.N.); (S.H.L.); (H.M.C.); (B.J.J.); (L.H.L.); (Y.B.L.)
| | - Mi Sun Cheong
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (M.S.C.); (H.J.C.); (S.I.S.); (J.-I.C.)
| | - Hyun Jin Chun
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (M.S.C.); (H.J.C.); (S.I.S.); (J.-I.C.)
| | - Mi Suk Park
- Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.B.); (M.S.P.)
| | - Hyun Min Cho
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.H.N.); (S.H.L.); (H.M.C.); (B.J.J.); (L.H.L.); (Y.B.L.)
| | - Byung Jun Jin
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.H.N.); (S.H.L.); (H.M.C.); (B.J.J.); (L.H.L.); (Y.B.L.)
| | - Lack Hyeon Lim
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.H.N.); (S.H.L.); (H.M.C.); (B.J.J.); (L.H.L.); (Y.B.L.)
| | - Yong Bok Lee
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.H.N.); (S.H.L.); (H.M.C.); (B.J.J.); (L.H.L.); (Y.B.L.)
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (M.S.C.); (H.J.C.); (S.I.S.); (J.-I.C.)
| | - Sang In Shim
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (M.S.C.); (H.J.C.); (S.I.S.); (J.-I.C.)
| | - Jong-Il Chung
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (M.S.C.); (H.J.C.); (S.I.S.); (J.-I.C.)
| | - Min Chul Kim
- Division of Applied Life Science (BK21 Four), Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.H.N.); (S.H.L.); (H.M.C.); (B.J.J.); (L.H.L.); (Y.B.L.)
- Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (D.B.); (M.S.P.)
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju Daero 501, Jinju 52828, Korea; (M.S.C.); (H.J.C.); (S.I.S.); (J.-I.C.)
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Salazar-Iribe A, De-la-Peña C. Auxins, the hidden player in chloroplast development. PLANT CELL REPORTS 2020; 39:1595-1608. [PMID: 32960306 DOI: 10.1007/s00299-020-02596-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 09/07/2020] [Indexed: 05/21/2023]
Abstract
Throughout decades of plant research, the plant hormones known as auxins have been found to be of vital importance in most plant development processes. Indole-3-acetic acid (IAA) represents the most common auxin in plants and can be synthesized from its tryptophan precursor, which is synthesized in the chloroplast. The chloroplast constitutes an organelle of great relevance to plants since the photosynthesis process by which plants get most of their energy is carried out there. The role of auxins in photosynthesis has been studied for at least 50 years, and in this time, it has been shown that auxins have an effect on several of the essential components and structure of the chloroplast. In recent decades, a high number of genes have been reported to be expressed in the chloroplast and some of their mutants have been shown to alter different auxin-mediated pathways. Genes in signaling pathways such as IAA/AUX, ARF, GH.3, SAUR and TIR, biosynthesis-related genes such as YUCCA and transport-related genes such as PIN have been identified among the most regulated genes in mutants related to alterations in the chloroplast. This review aims to provide a complete and updated summary of the relationship between auxins and several processes that involve the chloroplast, including chloroplast development, plant albinism, redox regulation and pigment synthesis.
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Affiliation(s)
- Alexis Salazar-Iribe
- Centro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130 x 32 y 34. Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, Mexico
| | - Clelia De-la-Peña
- Centro de Investigación Científica de Yucatán, Unidad de Biotecnología, Calle 43 No. 130 x 32 y 34. Col. Chuburná de Hidalgo, 97205, Mérida, Yucatán, Mexico.
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77
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Yoon YE, Cho HM, Bae DW, Lee SJ, Choe H, Kim MC, Cheong MS, Lee YB. Erythromycin Treatment of Brassica campestris Seedlings Impacts the Photosynthetic and Protein Synthesis Pathways. Life (Basel) 2020; 10:life10120311. [PMID: 33255918 PMCID: PMC7759809 DOI: 10.3390/life10120311] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 11/20/2020] [Accepted: 11/24/2020] [Indexed: 11/16/2022] Open
Abstract
Erythromycin (Ery) is a commonly used veterinary drug that prevents infections and promotes the growth of farm animals. Ery is often detected in agricultural fields due to the effects of manure application in the ecosystem. However, there is a lack of information on Ery toxicity in crops. In this study, we performed a comparative proteomic analysis to identify the molecular mechanisms of Ery toxicity during seedling growth based on our observation of a decrease in chlorophyll (Chl) contents using Brassica campestris. A total of 452 differentially abundant proteins (DAPs) were identified including a ribulose-1,5-bisphosphate carboxylase (RuBisCO). The proteomic analysis according to gene ontology (GO) classification revealed that many of these DAPs responding to Ery treatment functioned in a cellular process and a metabolic process. The molecular function analysis showed that DAPs classified within catalytic activity were predominantly changed by Ery, including metabolite interconversion enzyme and protein modifying enzyme. An analysis of functional pathways using MapMan revealed that many photosynthesis components were downregulated, whereas many protein biosynthesis components were upregulated. A good relationship was observed between protein and transcript abundance in a photosynthetic pathway, as determined by qPCR analysis. These combined results suggest that Ery affects plant physiological activity by downregulating protein abundance in the photosynthetic pathway.
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Affiliation(s)
- Young-Eun Yoon
- Division of Applied Life Science (BK21four), Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea; (Y.-E.Y.); (H.M.C.); (H.C.); (M.C.K.)
| | - Hyun Min Cho
- Division of Applied Life Science (BK21four), Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea; (Y.-E.Y.); (H.M.C.); (H.C.); (M.C.K.)
| | - Dong-won Bae
- Center for Research Facilities, Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea;
| | - Sung Joong Lee
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea;
| | - Hyeonji Choe
- Division of Applied Life Science (BK21four), Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea; (Y.-E.Y.); (H.M.C.); (H.C.); (M.C.K.)
| | - Min Chul Kim
- Division of Applied Life Science (BK21four), Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea; (Y.-E.Y.); (H.M.C.); (H.C.); (M.C.K.)
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea;
| | - Mi Sun Cheong
- Division of Applied Life Science (BK21four), Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea; (Y.-E.Y.); (H.M.C.); (H.C.); (M.C.K.)
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea;
- Correspondence: (M.S.C.); (Y.B.L.); Tel.: +82-55-772-1967 (M.S.C. & Y.B.L.)
| | - Yong Bok Lee
- Division of Applied Life Science (BK21four), Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea; (Y.-E.Y.); (H.M.C.); (H.C.); (M.C.K.)
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju-daero 501, Jinju 52665, Korea;
- Correspondence: (M.S.C.); (Y.B.L.); Tel.: +82-55-772-1967 (M.S.C. & Y.B.L.)
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78
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Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean. ISME JOURNAL 2020; 15:520-533. [PMID: 33033374 DOI: 10.1038/s41396-020-00793-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 09/18/2020] [Accepted: 09/23/2020] [Indexed: 01/01/2023]
Abstract
Sunlight is the most important environmental control on diel fluctuations in phytoplankton activity, and understanding diel microbial processes is essential to the study of oceanic biogeochemical cycles. Yet, little is known about the in situ temporal dynamics of phytoplankton metabolic activities and their coordination across different populations. We investigated diel orchestration of phytoplankton activity in photosynthesis, photoacclimation, and photoprotection by analyzing pigment and quinone distributions in combination with metatranscriptomes in surface waters of the North Pacific Subtropical Gyre (NPSG). We found diel cycles in pigment abundances resulting from the balance of their synthesis and consumption. These dynamics suggest that night represents a metabolic recovery phase, refilling cellular pigment stores, while photosystems are remodeled towards photoprotection during daytime. Transcript levels of genes involved in photosynthesis and pigment metabolism had synchronized diel expression patterns among all taxa, reflecting the driving force light imparts upon photosynthetic organisms in the ocean, while other environmental factors drive niche differentiation. For instance, observed decoupling of diel oscillations in transcripts and related pigments indicates that pigment abundances are modulated by environmental factors extending beyond gene expression/regulation reinforcing the need to combine metatranscriptomics with proteomics and metabolomics to fully understand the timing of these critical processes in situ.
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Juarez BA, Garces VG, Cordero-Esquivel B, Spalding GC, O’Donnell KA. Detachment of Dunaliella tertiolecta Microalgae from a Glass Surface by a Near-Infrared Optical Trap. SENSORS (BASEL, SWITZERLAND) 2020; 20:E5656. [PMID: 33023245 PMCID: PMC7582954 DOI: 10.3390/s20195656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 07/17/2020] [Accepted: 07/17/2020] [Indexed: 11/16/2022]
Abstract
We report on the observation of the detachment in situ and in vivo of Dunaliella tertiolecta microalgae cells from a glass surface using a 1064 nm wavelength trapping laser beam. The principal bends of both flagella of Dunaliella were seen self-adhered to either the top or bottom coverslip surfaces of a 50 μm thick chamber. When a selected attached Dunaliella was placed in the trapping site, it photoresponded to the laser beam by moving its body and flagellar tips, which eventually resulted in its detachment. The dependence of the time required for detachment on the trapping power was measured. No significant difference was found in the detachment time for cells detached from the top or bottom coverslip, indicating that the induced detachment was not due solely to the optical forces applied to the cells. After detachment, the cells remained within the optical trap. Dunaliella detached from the bottom were seen rotating about their long axis in a counterclockwise direction, while those detached from the top did not rotate. The rotation frequency and the minimal force required to escape from the trap were also measured. The average rotation frequency was found to be independent of the trapping power, and the swimming force of a cell escaping the laser trap ranged from 4 to 10 picoNewtons. Our observations provide insight into the photostimulus produced when a near-infrared trapping beam encounters a Dunaliella. The microalgae frequently absorb more light than they can actually use in photosynthesis, which could cause genetic and molecular changes. Our findings may open new research directions into the study of photomovement in species of Dunaliella and other swimming microorganisms that could eventually help to solve technological problems currently confronting biomass production. In future work, studies of the response to excess light may uncover unrecognized mechanisms of photoprotection and photoacclimation.
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Affiliation(s)
- Beatriz A. Juarez
- División de Física Aplicada, Centro de Investigación Científica y de Educación Superior de Ensenada, Carretera Ensenada-Tijuana No. 3918, Zona Playitas, Ensenada C.P. 22860, Baja California, Mexico; (B.A.J.); (K.A.O.)
| | - Veneranda G. Garces
- lPacifica Photonics Consultants, Carretera Tijuana-Ensenada Km 99, No.1, Villa San Miguel, El Sauzal, Ensenada C.P. 22768, Baja California, Mexico
| | - Beatriz Cordero-Esquivel
- División de Oceanologia, Centro de Investigación Científica y de Educación Superior de Ensenada, Carretera Ensenada-Tijuana No. 3918, Zona Playitas, Ensenada C.P. 22860, Baja California, Mexico;
| | - Gabriel C. Spalding
- Department of Physics, Illinois Wesleyan University, Bloomington, IL 61702-2900, USA;
| | - Kevin A. O’Donnell
- División de Física Aplicada, Centro de Investigación Científica y de Educación Superior de Ensenada, Carretera Ensenada-Tijuana No. 3918, Zona Playitas, Ensenada C.P. 22860, Baja California, Mexico; (B.A.J.); (K.A.O.)
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Kiran Karthik Raj, Pandey RN, Singh B, Talukdar A, Meena MC, Chobhe KA. Evidences for the use of 14C content in the root exudates as a novel application of radiocarbon labelling for screening iron deficiency tolerance of soybean (Glycine max (L.) Merr.) genotypes. J Radioanal Nucl Chem 2020. [DOI: 10.1007/s10967-020-07284-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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81
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Li X, Zhao J, Shang M, Song H, Zhang J, Xu X, Zheng S, Hou L, Li M, Xing G. Physiological and molecular basis of promoting leaf growth in strawberry (Fragaria ananassa Duch.) by CO2 enrichment. BIOTECHNOL BIOTEC EQ 2020. [DOI: 10.1080/13102818.2020.1811766] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
Affiliation(s)
- Xuan Li
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Jing Zhao
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Mengya Shang
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Hongxia Song
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Jing Zhang
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Xiaoyong Xu
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Shaowen Zheng
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Leiping Hou
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Meilan Li
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
| | - Guoming Xing
- Collaborative Innovation Center for Improving Quality and Increasing Profits of Protected Vegetables in Shanxi, College of Horticulture, Shanxi Agricultural University, Taigu, PR China
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82
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Hu B, Chen W, Guo L, Liu Y, Pu Z, Zhang G, Tu B, Yuan H, Wang Y, Ma B, Li W, Yin J, Chen X, Qin P, Li S. Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 298:110585. [PMID: 32771145 DOI: 10.1016/j.plantsci.2020.110585] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 06/24/2020] [Accepted: 06/27/2020] [Indexed: 06/11/2023]
Abstract
Leaf color is directly associated with plant photosynthesis. Here, we have isolated and identified a spontaneous rice mutant named yd1 that has yellowish leaves and dwarf stature. Map-based cloning reveals that YD1 encodes a previously reported kinesin protein from the kinesin-4 subfamily, BC12/GDD1. Arginine-328 is replaced by leucine in yd1, BC12328Leu. YD1 is mainly expressed in leaves and is involved in chlorophyll (Chl) synthesis. The yd1 mutant had less Chl and a reduced and disordered thylakoid ultrastructure. In yd1 plants, Chl biosynthesis and photosynthesis associated gene expression was decreased and Chl degradation gene expression was increased, thereby leading to a reduced photosynthesis rate and grain yield. In this study we reveal that the novel BC12328Leu allele of BC12 modulated plant leaf color in yd1 plants, which has not been previously reported in studies of BC12/GDD1/MTD1/SRG1. Gene knockout results indicated that YD1 regulates leaf color in the indica rice background, but not in the japonica rice background. Our study provides new insights into molecular regulation of rice growth by BC12/GDD1 in different genetic backgrounds.
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Affiliation(s)
- Binhua Hu
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China; Institute of Biotechnology and Nuclear Technology, Sichuan Academy of Agricultural Sciences, Chengdu 610061, China
| | - Weilan Chen
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Lianan Guo
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yulan Liu
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Zhigang Pu
- Institute of Biotechnology and Nuclear Technology, Sichuan Academy of Agricultural Sciences, Chengdu 610061, China
| | - Guohua Zhang
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Bin Tu
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Hua Yuan
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yuping Wang
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Bingtian Ma
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Weitao Li
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Junjie Yin
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xuewei Chen
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Peng Qin
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China.
| | - Shigui Li
- Rice Research Institute, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, Sichuan, China.
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83
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de Vries J, de Vries S, Curtis BA, Zhou H, Penny S, Feussner K, Pinto DM, Steinert M, Cohen AM, von Schwartzenberg K, Archibald JM. Heat stress response in the closest algal relatives of land plants reveals conserved stress signaling circuits. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:1025-1048. [PMID: 32333477 DOI: 10.1111/tpj.14782] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 03/28/2020] [Accepted: 04/08/2020] [Indexed: 05/20/2023]
Abstract
All land plants (embryophytes) share a common ancestor that likely evolved from a filamentous freshwater alga. Elucidating the transition from algae to embryophytes - and the eventual conquering of Earth's surface - is one of the most fundamental questions in plant evolutionary biology. Here, we investigated one of the organismal properties that might have enabled this transition: resistance to drastic temperature shifts. We explored the effect of heat stress in Mougeotia and Spirogyra, two representatives of Zygnematophyceae - the closest known algal sister lineage to land plants. Heat stress induced pronounced phenotypic alterations in their plastids, and high-performance liquid chromatography-tandem mass spectroscopy-based profiling of 565 transitions for the analysis of main central metabolites revealed significant shifts in 43 compounds. We also analyzed the global differential gene expression responses triggered by heat, generating 92.8 Gbp of sequence data and assembling a combined set of 8905 well-expressed genes. Each organism had its own distinct gene expression profile; less than one-half of their shared genes showed concordant gene expression trends. We nevertheless detected common signature responses to heat such as elevated transcript levels for molecular chaperones, thylakoid components, and - corroborating our metabolomic data - amino acid metabolism. We also uncovered the heat-stress responsiveness of genes for phosphorelay-based signal transduction that links environmental cues, calcium signatures and plastid biology. Our data allow us to infer the molecular heat stress response that the earliest land plants might have used when facing the rapidly shifting temperature conditions of the terrestrial habitat.
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Affiliation(s)
- Jan de Vries
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
- Institute of Microbiology, Technische Universität Braunschweig, Spielmannstr. 7, 38106, Braunschweig, Germany
- Department of Applied Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goldschmidtstr. 1, 37077, Goettingen, Germany
- Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, 37077, Goettingen, Germany
| | - Sophie de Vries
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
- Institute of Population Genetics, Heinrich-Heine University Duesseldorf, Universitätsstr. 1, 40225, Duesseldorf, Germany
| | - Bruce A Curtis
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
| | - Hong Zhou
- Microalgae and Zygnematophyceae Collection Hamburg (MZCH) and Aquatic Ecophysiology and Phycology, Institute of Plant Science and Microbiology, Universität Hamburg, 22609, Hamburg, Germany
| | - Susanne Penny
- National Research Council, Human Health Therapeutics, 1411 Oxford Street, Halifax, NS, B3H 3Z1, Canada
| | - Kirstin Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Justus-von-Liebig-Weg 11, 37077, Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen Center for Molecular Biosciences (GZMB), 37077, Goettingen, Germany
| | - Devanand M Pinto
- National Research Council, Human Health Therapeutics, 1411 Oxford Street, Halifax, NS, B3H 3Z1, Canada
- Department of Chemistry, Dalhousie University, 6274 Coburg Rd, Halifax, NS, B3H 4R2, Canada
| | - Michael Steinert
- Institute of Microbiology, Technische Universität Braunschweig, Spielmannstr. 7, 38106, Braunschweig, Germany
| | - Alejandro M Cohen
- Biological Spectrometry Core Facility, Life Sciences Research Institute, Dalhousie University, Halifax, NS, B3H 4R2, Canada
| | - Klaus von Schwartzenberg
- Microalgae and Zygnematophyceae Collection Hamburg (MZCH) and Aquatic Ecophysiology and Phycology, Institute of Plant Science and Microbiology, Universität Hamburg, 22609, Hamburg, Germany
| | - John M Archibald
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
- Canadian Institute for Advanced Research, 661 University Ave, Suite 505, Toronto, ON, M5G 1M1, Canada
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84
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The plastid NAD(P)H dehydrogenase-like complex: structure, function and evolutionary dynamics. Biochem J 2020; 476:2743-2756. [PMID: 31654059 DOI: 10.1042/bcj20190365] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 08/27/2019] [Accepted: 09/02/2019] [Indexed: 11/17/2022]
Abstract
The thylakoid NAD(P)H dehydrogenase-like (NDH) complex is a large protein complex that reduces plastoquinone and pumps protons into the lumen generating protonmotive force. In plants, the complex consists of both nuclear and chloroplast-encoded subunits. Despite its perceived importance for stress tolerance and ATP generation, chloroplast-encoded NDH subunits have been lost numerous times during evolution in species occupying seemingly unrelated environmental niches. We have generated a phylogenetic tree that reveals independent losses in multiple phylogenetic lineages, and we use this tree as a reference to discuss possible evolutionary contexts that may have relaxed selective pressure for retention of ndh genes. While we are still yet unable to pinpoint a singular specific lifestyle that negates the need for NDH, we are able to rule out several long-standing explanations. In light of this, we discuss the biochemical changes that would be required for the chloroplast to dispense with NDH functionality with regards to known and proposed NDH-related reactions.
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85
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Petrova EV, Kukarskikh GP, Krendeleva TE, Antal TK. The Mechanisms and Role of Photosynthetic Hydrogen Production by Green Microalgae. Microbiology (Reading) 2020. [DOI: 10.1134/s0026261720030169] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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86
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Hertle AP, García-Cerdán JG, Armbruster U, Shih R, Lee JJ, Wong W, Niyogi KK. A Sec14 domain protein is required for photoautotrophic growth and chloroplast vesicle formation in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2020; 117:9101-9111. [PMID: 32245810 PMCID: PMC7183190 DOI: 10.1073/pnas.1916946117] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
In eukaryotic photosynthetic organisms, the conversion of solar into chemical energy occurs in thylakoid membranes in the chloroplast. How thylakoid membranes are formed and maintained is poorly understood. However, previous observations of vesicles adjacent to the stromal side of the inner envelope membrane of the chloroplast suggest a possible role of membrane transport via vesicle trafficking from the inner envelope to the thylakoids. Here we show that the model plant Arabidopsis thaliana has a chloroplast-localized Sec14-like protein (CPSFL1) that is necessary for photoautotrophic growth and vesicle formation at the inner envelope membrane of the chloroplast. The cpsfl1 mutants are seedling lethal, show a defect in thylakoid structure, and lack chloroplast vesicles. Sec14 domain proteins are found only in eukaryotes and have been well characterized in yeast, where they regulate vesicle budding at the trans-Golgi network. Like the yeast Sec14p, CPSFL1 binds phosphatidylinositol phosphates (PIPs) and phosphatidic acid (PA) and acts as a phosphatidylinositol transfer protein in vitro, and expression of Arabidopsis CPSFL1 can complement the yeast sec14 mutation. CPSFL1 can transfer PIP into PA-rich membrane bilayers in vitro, suggesting that CPSFL1 potentially facilitates vesicle formation by trafficking PA and/or PIP, known regulators of membrane trafficking between organellar subcompartments. These results underscore the role of vesicles in thylakoid biogenesis and/or maintenance. CPSFL1 appears to be an example of a eukaryotic cytosolic protein that has been coopted for a function in the chloroplast, an organelle derived from endosymbiosis of a cyanobacterium.
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Affiliation(s)
- Alexander P Hertle
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720;
| | - José G García-Cerdán
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720
| | - Ute Armbruster
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102
| | - Robert Shih
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
| | - Jimmy J Lee
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102
| | - Winnie Wong
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
| | - Krishna K Niyogi
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720;
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720
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87
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Tan Y, Zhang QS, Zhao W, Liu Z, Ma MY, Zhong MY, Wang MX. The highly efficient NDH-dependent photosystem I cyclic electron flow pathway in the marine angiosperm Zostera marina. PHOTOSYNTHESIS RESEARCH 2020; 144:49-62. [PMID: 32152819 DOI: 10.1007/s11120-020-00732-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Accepted: 03/03/2020] [Indexed: 05/13/2023]
Abstract
Zostera marina, a fully submerged marine angiosperm with a unique evolutionary history associated with its terrestrial origin, has distinct photochemical characteristics caused by its oxygen-evolving complex (OEC) being prone to deactivation in visible light. Based on the present phylogenetic analysis, the chloroplast NADPH dehydrogenase-like (NDH) complex was found to be completed in of Z. marina, unlike other marine plants, suggesting its crucial role. Thus, the responses of electron transport to irradiation were investigated through multiple chlorophyll fluorescence techniques and Western blot analysis. Moreover, the respective contribution of the two photosystem I cyclic electron flow (PSI-CEF) pathways to the generation of trans-thylakoid proton gradient (∆pH) was also examined using inhibitors. The contributions of the two PSI-CEF pathways to ∆pH were similar; furthermore, there was a trade-off between the two pathways under excess irradiation: the PGR5/L1-dependent PSI-CEF decreased gradually following its activation during the initial illumination, while NDH-dependent PSI-CEF was activated gradually with exposure duration. OEC inactivation was continuously under excess irradiation, which exhibits a positive linear correlation with the activation of NDH-dependent PSI-CEF. We suggest that PGR5/L1-dependent PSI-CEF was preferentially activated to handle the excess electron caused by the operation of OEC during the initial illumination. Subsequently, the increasing OEC inactivation with exposure duration resulted in a deficit of electrons. Limited electrons from PSI might preferentially synthesize NADPH, which could support the function of NDH-dependent PSI-CEF to generate ∆pH and ATP via reducing ferredoxin, thereby maintaining OEC stability.
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Affiliation(s)
- Ying Tan
- Ocean School, Yantai University, Yantai, 264005, People's Republic of China
| | - Quan Sheng Zhang
- Ocean School, Yantai University, Yantai, 264005, People's Republic of China.
| | - Wei Zhao
- Ocean School, Yantai University, Yantai, 264005, People's Republic of China
| | - Zhe Liu
- Ocean School, Yantai University, Yantai, 264005, People's Republic of China
| | - Ming Yu Ma
- Ocean School, Yantai University, Yantai, 264005, People's Republic of China
| | - Ming Yu Zhong
- Ocean School, Yantai University, Yantai, 264005, People's Republic of China
| | - Meng Xin Wang
- Ocean School, Yantai University, Yantai, 264005, People's Republic of China
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88
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Wang S, Chen TH, Liu EU, Liu CP. Accessing the nursing behaviour of Moso bamboo (Phyllostachys edilus) on carbohydrates dynamics and photosystems. Sci Rep 2020; 10:1015. [PMID: 31974388 PMCID: PMC6978378 DOI: 10.1038/s41598-020-57643-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 12/30/2019] [Indexed: 11/28/2022] Open
Abstract
Nursing behaviour, also known as breastfeeding behaviour, is the feeding of juvenile individuals with nutrients or proteins from matures especially in mammals. As a hypothetical phenomenon in bamboo forests, mature bamboos have transferred photoassimilates to young bamboos for recovering and rebuilding their photosystems especially in winter. This process is accompanied by changes in the ability of photosystems and the mass fraction of non-structural carbohydrates (NSCs), structural carbohydrates (SCs), and lignin. We analysed carbohydrates and chlorophyll fluorescence to compare the physiological traits in mature (age 2, 3, 4) and immature (age 1) Moso bamboos (Phyllostachys edilus) during a year using the Portable Chlorophyll Fluorometer (PCF) and the Liquid Chromatographic (LC) method. The results showed that the mass fraction of total soluble carbohydrates (TSCs) and starch in the bottom of bamboo at age 1 was higher than other parts and ages in spring, whereas the mass fraction of TSCs, starch, and sucrose at age 3 was higher than other parts and ages in winter. The Fv/Fm, an indicator to reveal photosystems were functional or not, at age 1 dramatically dropped when the cold current attacked first time in October, and then quickly recovered in November. Our findings indicate that mature bamboos very possibly provide carbohydrates to immature bamboos and help them rebuild their photosystems when a bamboo forest resists cold stress.
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Affiliation(s)
- Shitephen Wang
- Kyoto University, Graduate School of Agriculture, Kyoto, 606-0096, Japan
| | - Tsai-Huei Chen
- Taiwan Forest Research Institute, Silviculture Division, Taipei, 10066, Taiwan
| | - En-U Liu
- Taiwan Forest Research Institute, Forestry Economics Division, Taipei, 10066, Taiwan
| | - Chiung-Pin Liu
- National Chung Hsing University, Department of Forestry, Taichung, 40227, Taiwan.
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89
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The chloroplast metalloproteases VAR2 and EGY1 act synergistically to regulate chloroplast development in Arabidopsis. J Biol Chem 2020. [DOI: 10.1016/s0021-9258(17)49913-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
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90
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Bellan A, Bucci F, Perin G, Alboresi A, Morosinotto T. Photosynthesis Regulation in Response to Fluctuating Light in the Secondary Endosymbiont Alga Nannochloropsis gaditana. PLANT & CELL PHYSIOLOGY 2020; 61:41-52. [PMID: 31511895 DOI: 10.1093/pcp/pcz174] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Accepted: 09/03/2019] [Indexed: 06/10/2023]
Abstract
In nature, photosynthetic organisms are exposed to highly dynamic environmental conditions where the excitation energy and electron flow in the photosynthetic apparatus need to be continuously modulated. Fluctuations in incident light are particularly challenging because they drive oversaturation of photosynthesis with consequent oxidative stress and photoinhibition. Plants and algae have evolved several mechanisms to modulate their photosynthetic machinery to cope with light dynamics, such as thermal dissipation of excited chlorophyll states (non-photochemical quenching, NPQ) and regulation of electron transport. The regulatory mechanisms involved in the response to light dynamics have adapted during evolution, and exploring biodiversity is a valuable strategy for expanding our understanding of their biological roles. In this work, we investigated the response to fluctuating light in Nannochloropsis gaditana, a eukaryotic microalga of the phylum Heterokonta originating from a secondary endosymbiotic event. Nannochloropsis gaditana is negatively affected by light fluctuations, leading to large reductions in growth and photosynthetic electron transport. Exposure to light fluctuations specifically damages photosystem I, likely because of the ineffective regulation of electron transport in this species. The role of NPQ, also assessed using a mutant strain specifically depleted of this response, was instead found to be minor, especially in responding to the fastest light fluctuations.
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Affiliation(s)
- Alessandra Bellan
- Department of Biology, University of Padova, Via U. Bassi 58/B, Padova 35121, Italy
| | - Francesca Bucci
- Department of Biology, University of Padova, Via U. Bassi 58/B, Padova 35121, Italy
| | - Giorgio Perin
- Department of Biology, University of Padova, Via U. Bassi 58/B, Padova 35121, Italy
| | - Alessandro Alboresi
- Department of Biology, University of Padova, Via U. Bassi 58/B, Padova 35121, Italy
| | - Tomas Morosinotto
- Department of Biology, University of Padova, Via U. Bassi 58/B, Padova 35121, Italy
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91
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Rochaix JD. The Dynamics of the Photosynthetic Apparatus in Algae. PHOTOSYNTHESIS IN ALGAE: BIOCHEMICAL AND PHYSIOLOGICAL MECHANISMS 2020. [DOI: 10.1007/978-3-030-33397-3_4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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92
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Qi Y, Wang X, Lei P, Li H, Yan L, Zhao J, Meng J, Shao J, An L, Yu F, Liu X. The chloroplast metalloproteases VAR2 and EGY1 act synergistically to regulate chloroplast development in Arabidopsis. J Biol Chem 2019; 295:1036-1046. [PMID: 31836664 DOI: 10.1074/jbc.ra119.011853] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 12/09/2019] [Indexed: 12/29/2022] Open
Abstract
Chloroplast development and photosynthesis require the proper assembly and turnover of photosynthetic protein complexes. Chloroplasts harbor a repertoire of proteases to facilitate proteostasis and development. We have previously used an Arabidopsis leaf variegation mutant, yellow variegated2 (var2), defective in thylakoid FtsH protease complexes, as a tool to dissect the genetic regulation of chloroplast development. Here, we report a new genetic enhancer mutant of var2, enhancer of variegation3-1 (evr3-1). We confirm that EVR3 encodes a chloroplast metalloprotease, reported previously as ethylene-dependent gravitropism-deficient and yellow-green1 (EGY1)/ammonium overly sensitive1 (AMOS1). We observed that mutations in EVR3/EGY1/AMOS1 cause more severe leaf variegation in var2-5 and synthetic lethality in var2-4 Using a modified blue-native PAGE system, we reveal abnormal accumulations of photosystem I, photosystem II, and light-harvesting antenna complexes in EVR3/EGY1/AMOS1 mutants. Moreover, we discover distinct roles of VAR2 and EVR3/EGY1/AMOS1 in the turnover of photosystem II reaction center under high light stress. In summary, our findings indicate that two chloroplast metalloproteases, VAR2/AtFtsH2 and EVR3/EGY1/AMOS1, function coordinately to regulate chloroplast development and reveal new roles of EVR3/EGY1/AMOS1 in regulating chloroplast proteostasis in Arabidopsis.
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Affiliation(s)
- Yafei Qi
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xiaomin Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Pei Lei
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Huimin Li
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Liru Yan
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jun Zhao
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jingjing Meng
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jingxia Shao
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Lijun An
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Fei Yu
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xiayan Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
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93
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Good News for Nuclear Transgene Expression in Chlamydomonas. Cells 2019; 8:cells8121534. [PMID: 31795196 PMCID: PMC6952782 DOI: 10.3390/cells8121534] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2019] [Revised: 11/13/2019] [Accepted: 11/25/2019] [Indexed: 12/20/2022] Open
Abstract
Chlamydomonas reinhardtii is a well-established model system for basic research questions ranging from photosynthesis and organelle biogenesis, to the biology of cilia and basal bodies, to channelrhodopsins and photoreceptors. More recently, Chlamydomonas has also been recognized as a suitable host for the production of high-value chemicals and high-value recombinant proteins. However, basic and applied research have suffered from the inefficient expression of nuclear transgenes. The combined efforts of the Chlamydomonas community over the past decades have provided insights into the mechanisms underlying this phenomenon and have resulted in mutant strains defective in some silencing mechanisms. Moreover, many insights have been gained into the parameters that affect nuclear transgene expression, like promoters, introns, codon usage, or terminators. Here I critically review these insights and try to integrate them into design suggestions for the construction of nuclear transgenes that are to be expressed at high levels.
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94
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Testone G, Baldoni E, Iannelli MA, Nicolodi C, Di Giacomo E, Pietrini F, Mele G, Giannino D, Frugis G. Transcription Factor Networks in Leaves of Cichorium endivia: New Insights into the Relationship Between Photosynthesis and Leaf Development. PLANTS (BASEL, SWITZERLAND) 2019; 8:E531. [PMID: 31766484 PMCID: PMC6963412 DOI: 10.3390/plants8120531] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 11/14/2019] [Accepted: 11/15/2019] [Indexed: 11/18/2022]
Abstract
Cichorium endivia is a leafy crop closely related to Lactuca sativa that comprises two major botanical varieties characterized by a high degree of intraspecific morphological variation: var. latifolium with broad leaves (escarole) and var. crispum with narrow crisp curly leaves (endive). To investigate the relationship between leaf morphology and photosynthetic activity, escaroles and endives were used as a crop model due to the striking morphological diversity of their leaves. We constructed a leaf database for transcription factors (TFs) and photosynthesis-related genes from a refined C. endivia transcriptome and used RNA-seq transcriptomic data from leaves of four commercial endive and escarole cultivars to explore transcription factor regulatory networks. Cluster and gene co-expression network (GCN) analyses identified two main anticorrelated modules that control photosynthesis. Analysis of the GCN network topological properties identified known and novel hub genes controlling photosynthesis, and candidate developmental genes at the boundaries between shape and function. Differential expression analysis between broad and curly leaves suggested three novel TFs putatively involved in leaf shape diversity. Physiological analysis of the photosynthesis properties and gene expression studies on broad and curly leaves provided new insights into the relationship between leaf shape and function.
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Affiliation(s)
- Giulio Testone
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
| | - Elena Baldoni
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Consiglio Nazionale delle Ricerche (CNR), Via Bassini 15, 20133 Milano, Italy
| | - Maria Adelaide Iannelli
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
| | - Chiara Nicolodi
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
| | - Elisabetta Di Giacomo
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
| | - Fabrizio Pietrini
- Istituto di Ricerca sugli Ecosistemi Terrestri (IRET), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km 29,300, 00015 Monterotondo Scalo (Roma), Italy;
| | - Giovanni Mele
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
| | - Donato Giannino
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
| | - Giovanna Frugis
- Istituto di Biologia e Biotecnologia Agraria (IBBA), Operative Unit of Rome, Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015 Monterotondo Scalo (Roma), Italy; (G.T.); (E.B.); (M.A.I.); (C.N.); (E.D.G.); (G.M.); (D.G.)
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95
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Graindorge S, Cognat V, Johann to Berens P, Mutterer J, Molinier J. Photodamage repair pathways contribute to the accurate maintenance of the DNA methylome landscape upon UV exposure. PLoS Genet 2019; 15:e1008476. [PMID: 31738755 PMCID: PMC6886878 DOI: 10.1371/journal.pgen.1008476] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 12/02/2019] [Accepted: 10/13/2019] [Indexed: 01/24/2023] Open
Abstract
Plants are exposed to the damaging effect of sunlight that induces DNA photolesions. In order to maintain genome integrity, specific DNA repair pathways are mobilized. Upon removal of UV-induced DNA lesions, the accurate re-establishment of epigenome landscape is expected to be a prominent step of these DNA repair pathways. However, it remains poorly documented whether DNA methylation is accurately maintained at photodamaged sites and how photodamage repair pathways contribute to the maintenance of genome/methylome integrities. Using genome wide approaches, we report that UV-C irradiation leads to CHH DNA methylation changes. We identified that the specific DNA repair pathways involved in the repair of UV-induced DNA lesions, Direct Repair (DR), Global Genome Repair (GGR) and small RNA-mediated GGR prevent the excessive alterations of DNA methylation landscape. Moreover, we identified that UV-C irradiation induced chromocenter reorganization and that photodamage repair factors control this dynamics. The methylome changes rely on misregulation of maintenance, de novo and active DNA demethylation pathways highlighting that molecular processes related to genome and methylome integrities are closely interconnected. Importantly, we identified that photolesions are sources of DNA methylation changes in repressive chromatin. This study unveils that DNA repair factors, together with small RNA, act to accurately maintain both genome and methylome integrities at photodamaged silent genomic regions, strengthening the idea that plants have evolved sophisticated interplays between DNA methylation dynamics and DNA repair.
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Affiliation(s)
- Stéfanie Graindorge
- Institut de biologie moléculaire des plantes, UPR2357-CNRS, Strasbourg, France
| | - Valérie Cognat
- Institut de biologie moléculaire des plantes, UPR2357-CNRS, Strasbourg, France
| | | | - Jérôme Mutterer
- Institut de biologie moléculaire des plantes, UPR2357-CNRS, Strasbourg, France
| | - Jean Molinier
- Institut de biologie moléculaire des plantes, UPR2357-CNRS, Strasbourg, France
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96
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Ospina Calvo B, Lagorio MG. Quantitative Effects of Pigmentation on the Re‐absorption of Chlorophyll
a
Fluorescence and Energy Partitioning in Leaves. Photochem Photobiol 2019; 95:1360-1368. [DOI: 10.1111/php.13149] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2019] [Accepted: 08/02/2019] [Indexed: 11/27/2022]
Affiliation(s)
- Brian Ospina Calvo
- CONICET, INQUIMAE, Facultad de Ciencias Exactas y Naturales Universidad de Buenos Aires Buenos Aires Argentina
- Facultad de Ciencias Exactas y Naturales, Dpto. de Química Inorgánica, Analítica y Química Física, Ciudad Universitaria Universidad de Buenos Aires Buenos Aires Argentina
| | - María Gabriela Lagorio
- CONICET, INQUIMAE, Facultad de Ciencias Exactas y Naturales Universidad de Buenos Aires Buenos Aires Argentina
- Facultad de Ciencias Exactas y Naturales, Dpto. de Química Inorgánica, Analítica y Química Física, Ciudad Universitaria Universidad de Buenos Aires Buenos Aires Argentina
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97
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Cano M, Holland SC, Artier J, Burnap RL, Ghirardi M, Morgan JA, Yu J. Glycogen Synthesis and Metabolite Overflow Contribute to Energy Balancing in Cyanobacteria. Cell Rep 2019; 23:667-672. [PMID: 29669272 DOI: 10.1016/j.celrep.2018.03.083] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 01/17/2018] [Accepted: 03/17/2018] [Indexed: 10/17/2022] Open
Abstract
Understanding how living cells manage high-energy metabolites such as ATP and NADPH is essential for understanding energy transformations in the biosphere. Using light as the energy input, we find that energy charge (ratio of ATP over ADP+ATP) in the cyanobacterium Synechocystis sp. PCC 6803 varies in different growth stages, with a peak upon entry into the rapid growth phase, as well as a positive correlation with light intensity. In contrast, a mutant that can no longer synthesize the main carbon storage compound glycogen showed higher energy charge. The overflow of organic acids in this mutant under nitrogen depletion could also be triggered under high light in nitrogen-replete conditions, with an energy input level dependency. These findings suggest that energy charge in cyanobacteria is tightly linked to growth and carbon partition and that energy management is of key significance for their application as photosynthetic carbon dioxide-assimilating cell factories.
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Affiliation(s)
- Melissa Cano
- National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401, USA
| | - Steven C Holland
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Juliana Artier
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Rob L Burnap
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Maria Ghirardi
- National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401, USA
| | - John A Morgan
- School of Chemical Engineering, Purdue University, West Lafayette, IN 47907, USA
| | - Jianping Yu
- National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401, USA.
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98
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Scholz M, Gäbelein P, Xue H, Mosebach L, Bergner SV, Hippler M. Light-dependent N-terminal phosphorylation of LHCSR3 and LHCB4 are interlinked in Chlamydomonas reinhardtii. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 99:877-894. [PMID: 31033075 PMCID: PMC6851877 DOI: 10.1111/tpj.14368] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 03/15/2019] [Accepted: 04/16/2019] [Indexed: 05/08/2023]
Abstract
Phosphorylation dynamics of LHCSR3 were investigated in Chlamydomonas reinhardtii by quantitative proteomics and genetic engineering. LHCSR3 protein expression and phosphorylation were induced in high light. Our data revealed synergistic and dynamic N-terminal LHCSR3 phosphorylation. Phosphorylated and nonphosphorylated LHCSR3 associated with PSII-LHCII supercomplexes. The phosphorylation status of LHCB4 was closely linked to the phosphorylation of multiple sites at the N-terminus of LHCSR3, indicating that LHCSR3 phosphorylation may operate as a molecular switch modulating LHCB4 phosphorylation, which in turn is important for PSII-LHCII disassembly. Notably, LHCSR3 phosphorylation diminished under prolonged high light, which coincided with onset of CEF. Hierarchical clustering of significantly altered proteins revealed similar expression profiles of LHCSR3, CRX, and FNR. This finding indicated the existence of a functional link between LHCSR3 protein abundance and phosphorylation, photosynthetic electron flow, and the oxidative stress response.
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Affiliation(s)
- Martin Scholz
- Institute of Plant Biology and BiotechnologyUniversity of MünsterSchlossplatz 8Münster48143Germany
| | - Philipp Gäbelein
- Institute of Plant Biology and BiotechnologyUniversity of MünsterSchlossplatz 8Münster48143Germany
| | - Huidan Xue
- Institute of Plant Biology and BiotechnologyUniversity of MünsterSchlossplatz 8Münster48143Germany
| | - Laura Mosebach
- Institute of Plant Biology and BiotechnologyUniversity of MünsterSchlossplatz 8Münster48143Germany
| | - Sonja Verena Bergner
- Institute of Plant Biology and BiotechnologyUniversity of MünsterSchlossplatz 8Münster48143Germany
- Present address:
Max Planck Institute of Molecular Plant PhysiologyAm Mühlenberg 1Potsdam‐Golm14476Germany
| | - Michael Hippler
- Institute of Plant Biology and BiotechnologyUniversity of MünsterSchlossplatz 8Münster48143Germany
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99
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Yeates AM, Zubko MK, Ruban AV. Absence of photosynthetic state transitions in alien chloroplasts. PLANTA 2019; 250:589-601. [PMID: 31134341 PMCID: PMC6602992 DOI: 10.1007/s00425-019-03187-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 05/11/2019] [Indexed: 06/09/2023]
Abstract
MAIN CONCLUSION The absence of state transitions in a Nt(Hn) cybrid is due to a cleavage of the threonine residue from the misprocessed N-terminus of the LHCII polypeptides. The cooperation between the nucleus and chloroplast genomes is essential for plant photosynthetic fitness. The rapid and specific interactions between nucleus-encoded and chloroplast-encoded proteins are under intense investigation with potential for applications in agriculture and renewable energy technology. Here, we present a novel model for photosynthesis research in which alien henbane (Hyoscyamus niger) chloroplasts function on the nuclear background of a tobacco (Nicotiana tabacum). The result of this coupling is a cytoplasmic hybrid (cybrid) with inhibited state transitions-a mechanism responsible for balancing energy absorption between photosystems. Protein analysis showed differences in the LHCII composition of the cybrid plants. SDS-PAGE analysis revealed a novel banding pattern in the cybrids with at least one additional 'LHCII' band compared to the wild-type parental species. Proteomic work suggested that the N-terminus of at least some of the cybrid Lhcb proteins was missing. These findings provide a mechanistic explanation for the lack of state transitions-the N-terminal truncation of the Lhcb proteins in the cybrid included the threonine residue that is phosphorylated/dephosphorylated in order to trigger state transitions and therefore crucial energy balancing mechanism in plants.
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Affiliation(s)
- Anna M Yeates
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK
- Mikrobiologický Institute, Novohradská 237 - Opatovický Mlýn, 37901, Třeboň, Czech Republic
| | - Mikhajlo K Zubko
- Faculty of Science and Engineering, Manchester Metropolitan University, John Dalton Building, Chester St, Manchester, M1 5GD, UK
| | - Alexander V Ruban
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK.
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100
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Kim M, Pernice M, Watson-Lazowski A, Guagliardo P, Kilburn MR, Larkum AWD, Raven JA, Ralph PJ. Effect of reduced irradiance on 13C uptake, gene expression and protein activity of the seagrass Zostera muelleri. MARINE ENVIRONMENTAL RESEARCH 2019; 149:80-89. [PMID: 31181418 DOI: 10.1016/j.marenvres.2019.06.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Revised: 05/30/2019] [Accepted: 06/05/2019] [Indexed: 06/09/2023]
Abstract
Photosynthesis in the seagrass Zostera muelleri remains poorly understood. We investigated the effect of reduced irradiance on the incorporation of 13C, gene expression of photosynthetic, photorespiratory and intermediates recycling genes as well as the enzymatic content and activity of Rubisco and PEPC within Z. muelleri. Following 48 h of reduced irradiance, we found that i) there was a ∼7 fold reduction in 13C incorporation in above ground tissue, ii) a significant down regulation of photosynthetic, photorespiratory and intermediates recycling genes and iii) no significant difference in enzyme activity and content. We propose that Z. muelleri is able to alter its physiology in order to reduce the amount of C lost through photorespiration to compensate for the reduced carbon assimilation as a result of reduced irradiance. In addition, the first estimated rate constant (Kcat) and maximum rates of carboxylation (Vcmax) of Rubisco is reported for the first time for Z. muelleri.
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Affiliation(s)
- Mikael Kim
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW, 2007, Australia
| | - Mathieu Pernice
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW, 2007, Australia.
| | - Alexander Watson-Lazowski
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, Australia; ARC Centre of Excellence for Translational Photosynthesis, Australian National University, Canberra, Australia
| | - Paul Guagliardo
- Centre for Microscopy, Characterisation and Analysis, University of Western Australia, Perth, WA, Australia
| | - Matt R Kilburn
- Centre for Microscopy, Characterisation and Analysis, University of Western Australia, Perth, WA, Australia
| | - Anthony W D Larkum
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW, 2007, Australia
| | - John A Raven
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW, 2007, Australia; Division of Plant Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Peter J Ralph
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW, 2007, Australia
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