51
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Wang Y, Yang W, Zuo Y, Zhu L, Hastwell AH, Chen L, Tian Y, Su C, Ferguson BJ, Li X. GmYUC2a mediates auxin biosynthesis during root development and nodulation in soybean. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3165-3176. [PMID: 30958883 PMCID: PMC6598056 DOI: 10.1093/jxb/erz144] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2018] [Accepted: 03/18/2019] [Indexed: 05/15/2023]
Abstract
Auxin plays central roles in rhizobial infection and nodule development in legumes. However, the sources of auxin during nodulation are unknown. In this study, we analyzed the YUCCA (YUC) gene family of soybean and identified GmYUC2a as an important regulator of auxin biosynthesis that modulates nodulation. Following rhizobial infection, GmYUC2a exhibited increased expression in various nodule tissues. Overexpression of GmYUC2a (35S::GmYUC2a) increased auxin production in soybean, resulting in severe growth defects in root hairs and root development. Upon rhizobial infection, 35S::GmYUC2a hairy roots displayed altered patterns of root hair deformation and nodule formation. Root hair deformation occurred mainly on primary roots, and nodules formed exclusively on primary roots of 35S::GmYUC2a plants. Moreover, transgenic 35S::GmYUC2a composite plants showed delayed nodule development and a reduced number of nodules. Our results suggest that GmYUC2a plays an important role in regulating both root growth and nodulation by modulating auxin balance in soybean.
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Affiliation(s)
- Youning Wang
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, PR China
| | - Wei Yang
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, PR China
| | - Yanyan Zuo
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, PR China
| | - Lin Zhu
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, PR China
| | - April H Hastwell
- Centre for Integrative Legume Research, School of Agriculture and Food Sciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Liang Chen
- Key State Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang, Hebei, China
| | - Yinping Tian
- Key State Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang, Hebei, China
| | - Chao Su
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, PR China
| | - Brett J Ferguson
- Centre for Integrative Legume Research, School of Agriculture and Food Sciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Xia Li
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, PR China
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52
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Abstract
Symbiotic legume nodules and lateral roots arise away from the root meristem via dedifferentiation events. While these organs share some morphological and developmental similarities, whether legume nodules are modified lateral roots is an open question. We dissected emerging nodules, mature nodules, emerging lateral roots and young lateral roots, and constructed strand-specific RNA sequencing (RNAseq) libraries using polyA-enriched RNA preparations. Root sections above and below these organs, devoid of any lateral organs, were used to construct respective control tissue libraries. High sequence quality, predominant mapping to coding sequences, and consistency between replicates indicated that the RNAseq libraries were of a very high quality. We identified genes enriched in emerging nodules, mature nodules, emerging lateral roots and young lateral roots in soybean by comparing global gene expression profiles between each of these organs and adjacent root segments. Potential uses for this high quality transcriptome data set include generation of global gene regulatory networks to identify key regulators; metabolic pathway analyses and comparative analyses of key gene families to discover organ-specific biological processes; and identification of organ-specific alternate spliced transcripts. When combined with other similar datasets, especially from leguminous plants, these analyses can help answer questions on the evolutionary origins of root nodules and relationships between the development of different plant lateral organs.
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53
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Song X, Li Y, Cao X, Qi Y. MicroRNAs and Their Regulatory Roles in Plant-Environment Interactions. ANNUAL REVIEW OF PLANT BIOLOGY 2019; 70:489-525. [PMID: 30848930 DOI: 10.1146/annurev-arplant-050718-100334] [Citation(s) in RCA: 363] [Impact Index Per Article: 72.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
MicroRNAs (miRNAs) are 20-24 nucleotide noncoding RNAs abundant in plants and animals. The biogenesis of plant miRNAs involves transcription of miRNA genes, processing of primary miRNA transcripts by DICER-LIKE proteins into mature miRNAs, and loading of mature miRNAs into ARGONAUTE proteins to form miRNA-induced silencing complex (miRISC). By targeting complementary sequences, miRISC negatively regulates gene expression, thereby coordinating plant development and plant-environment interactions. In this review, we present and discuss recent updates on the mechanisms and regulation of miRNA biogenesis, miRISC assembly and actions as well as the regulatory roles of miRNAs in plant developmental plasticity, abiotic/biotic responses, and symbiotic/parasitic interactions. Finally, we suggest future directions for plant miRNA research.
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Affiliation(s)
- Xianwei Song
- State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, CAS Center for Excellence in Molecular Plant Sciences, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China;
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100039, China
| | - Yan Li
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
- Tsinghua-Peking Center for Life Sciences, Beijing 100084, China
| | - Xiaofeng Cao
- State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, CAS Center for Excellence in Molecular Plant Sciences, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China;
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100039, China
| | - Yijun Qi
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
- Tsinghua-Peking Center for Life Sciences, Beijing 100084, China
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54
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Roy Choudhury S, Johns SM, Pandey S. A convenient, soil-free method for the production of root nodules in soybean to study the effects of exogenous additives. PLANT DIRECT 2019; 3:e00135. [PMID: 31245773 PMCID: PMC6589526 DOI: 10.1002/pld3.135] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Revised: 03/25/2019] [Accepted: 03/27/2019] [Indexed: 05/16/2023]
Abstract
Legumes develop root nodules that harbor endosymbiotic bacteria, rhizobia. These rhizobia convert nitrogen to ammonia by biological nitrogen fixation. A thorough understanding of the biological nitrogen fixation in legumes and its regulation is key to develop sustainable agriculture. It is well known that plant hormones affect nodule formation; however, most studies are limited to model legumes due to their suitability for in vitro, plate-based assays. Specifically, it is almost impossible to measure the effects of exogenous hormones or other additives during nodule development in crop legumes such as soybean as they have huge root system in soil. To circumvent this issue, the present research develops suitable media and growth conditions for efficient nodule development under in vitro, soil-free conditions in an important legume crop, soybean. Moreover, we also evaluate the effects of all major phytohormones on soybean nodule development under identical growing conditions. Phytohormones such as abscisic acid (ABA) and jasmonic acid (JA) had an overall inhibitory effect and those such as gibberellic acid (GA) or brassinosteroids (BRs) had an overall positive effect on nodule formation. This versatile, inexpensive, scalable, and simple protocol provides several advantages over previously established methods. It is extremely time- and resource-efficient, does not require special training or equipment, and produces highly reproducible results. The approach is expandable to other large legumes as well as for other exogenous additives.
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Affiliation(s)
| | | | - Sona Pandey
- Donald Danforth Plant Science CenterSt. LouisMissouri
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55
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Gautrat P, Mortier V, Laffont C, De Keyser A, Fromentin J, Frugier F, Goormachtig S. Unraveling new molecular players involved in the autoregulation of nodulation in Medicago truncatula. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:1407-1417. [PMID: 30753553 PMCID: PMC6382332 DOI: 10.1093/jxb/ery465] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Accepted: 12/19/2018] [Indexed: 05/22/2023]
Abstract
The number of legume root nodules resulting from a symbiosis with rhizobia is tightly controlled by the plant. Certain members of the CLAVATA3/Embryo Surrounding Region (CLE) peptide family, specifically MtCLE12 and MtCLE13 in Medicago truncatula, act in the systemic autoregulation of nodulation (AON) pathway that negatively regulates the number of nodules. Little is known about the molecular pathways that operate downstream of the AON-related CLE peptides. Here, by means of a transcriptome analysis, we show that roots ectopically expressing MtCLE13 deregulate only a limited number of genes, including three down-regulated genes encoding lysin motif receptor-like kinases (LysM-RLKs), among which are the nodulation factor (NF) receptor NF Perception gene (NFP) and two up-regulated genes, MtTML1 and MtTML2, encoding Too Much Love (TML)-related Kelch-repeat containing F-box proteins. The observed deregulation was specific for the ectopic expression of nodulation-related MtCLE genes and depended on the Super Numeric Nodules (SUNN) AON RLK. Moreover, overexpression and silencing of these two MtTML genes demonstrated that they play a role in the negative regulation of nodule numbers. Hence, the identified MtTML genes are the functional counterpart of the Lotus japonicus TML gene shown to be central in the AON pathway. Additionally, we propose that the down-regulation of a subset of LysM-RLK-encoding genes, among which is NFP, might contribute to the restriction of further nodulation once the first nodules have been formed.
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Affiliation(s)
- Pierre Gautrat
- Institute of Plant Sciences-Paris Saclay (IPS2), Centre National de la Recherche Scientifique, Université Paris-Sud, Université Paris-Diderot, Université d’Evry, Institut National de la Recherche Agronomique, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Virginie Mortier
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Carole Laffont
- Institute of Plant Sciences-Paris Saclay (IPS2), Centre National de la Recherche Scientifique, Université Paris-Sud, Université Paris-Diderot, Université d’Evry, Institut National de la Recherche Agronomique, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Annick De Keyser
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Justine Fromentin
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
- Laboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche, Institut National de la Recherche Agronomique, Castanet-Tolosan, France
- Laboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche, Centre National de la Recherche Scientifique, Castanet-Tolosan, France
| | - Florian Frugier
- Institute of Plant Sciences-Paris Saclay (IPS2), Centre National de la Recherche Scientifique, Université Paris-Sud, Université Paris-Diderot, Université d’Evry, Institut National de la Recherche Agronomique, Université Paris-Saclay, Gif-sur-Yvette, France
- Correspondence: or
| | - Sofie Goormachtig
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
- Correspondence: or
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56
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Quezada EH, García GX, Arthikala MK, Melappa G, Lara M, Nanjareddy K. Cysteine-Rich Receptor-Like Kinase Gene Family Identification in the Phaseolus Genome and Comparative Analysis of Their Expression Profiles Specific to Mycorrhizal and Rhizobial Symbiosis. Genes (Basel) 2019; 10:genes10010059. [PMID: 30658517 PMCID: PMC6356535 DOI: 10.3390/genes10010059] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Revised: 01/06/2019] [Accepted: 01/09/2019] [Indexed: 01/03/2023] Open
Abstract
Receptor-like kinases (RLKs) are conserved upstream signaling molecules that regulate several biological processes, including plant development and stress adaptation. Cysteine (C)-rich receptor-like kinases (CRKs) are an important class of RLK that play vital roles in disease resistance and cell death in plants. Genome-wide analyses of CRK genes have been carried out in Arabidopsis and rice, while functional characterization of some CRKs has been carried out in wheat and tomato in addition to Arabidopsis. A comprehensive analysis of the CRK gene family in leguminous crops has not yet been conducted, and our understanding of their roles in symbiosis is rather limited. Here, we report the comprehensive analysis of the PhaseolusCRK gene family, including identification, sequence similarity, phylogeny, chromosomal localization, gene structures, transcript expression profiles, and in silico promoter analysis. Forty-six CRK homologs were identified and phylogenetically clustered into five groups. Expression analysis suggests that PvCRK genes are differentially expressed in both vegetative and reproductive tissues. Further, transcriptomic analysis revealed that shared and unique CRK genes were upregulated during arbuscular mycorrhizal and rhizobial symbiosis. Overall, the systematic analysis of the PvCRK gene family provides valuable information for further studies on the biological roles of CRKs in various Phaseolus tissues during diverse biological processes, including Phaseolus-mycorrhiza/rhizobia symbiosis.
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Affiliation(s)
- Elsa-Herminia Quezada
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León-Universidad Nacional Autónoma de México (UNAM), C.P. 37684 León, Mexico.
| | - Gabriel-Xicoténcatl García
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León-Universidad Nacional Autónoma de México (UNAM), C.P. 37684 León, Mexico.
| | - Manoj-Kumar Arthikala
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León-Universidad Nacional Autónoma de México (UNAM), C.P. 37684 León, Mexico.
| | - Govindappa Melappa
- Department of Biotechnology, Dayananda Sagar College of Engineering, Shavige Malleshwara Hills, Kumaraswamy Layout, Bengaluru 560 078, India.
| | - Miguel Lara
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), C.P. 62271 Cuernavaca, Mexico.
| | - Kalpana Nanjareddy
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León-Universidad Nacional Autónoma de México (UNAM), C.P. 37684 León, Mexico.
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57
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Sańko-Sawczenko I, Dmitruk D, Łotocka B, Różańska E, Czarnocka W. Expression Analysis of PIN Genes in Root Tips and Nodules of Lotus japonicus. Int J Mol Sci 2019; 20:E235. [PMID: 30634426 PMCID: PMC6359356 DOI: 10.3390/ijms20020235] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 12/31/2018] [Accepted: 01/04/2019] [Indexed: 02/02/2023] Open
Abstract
Auxins are postulated to be one of the pivotal factors in nodulation. However, their transporters in Lotus japonicus, the model species for the study of the development of determinate-type root nodules, have been scarcely described so far, and thus their role in nodulation has remained unknown. Our research is the first focusing on polar auxin transporters in L. japonicus. We analyzed and compared expression of PINs in 20 days post rhizobial inoculation (dpi) and 54 dpi root nodules of L. japonicus by real-time quantitative polymerase chain reaction (qPCR) along with the histochemical β-glucuronidase (GUS) reporter gene assay in transgenic hairy roots. The results indicate that LjPINs are essential during root nodule development since they are predominantly expressed in the primordia and young, developing nodules. However, along with differentiation, expression levels of several PINs decreased and occurred particularly in the nodule vascular bundles, especially in connection with the root's stele. Moreover, our study demonstrated the importance of both polar auxin transport and auxin intracellular homeostasis during L. japonicus root nodule development and differentiation.
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Affiliation(s)
- Izabela Sańko-Sawczenko
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Dominika Dmitruk
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Barbara Łotocka
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Elżbieta Różańska
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Weronika Czarnocka
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
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58
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Gauthier-Coles C, White RG, Mathesius U. Nodulating Legumes Are Distinguished by a Sensitivity to Cytokinin in the Root Cortex Leading to Pseudonodule Development. FRONTIERS IN PLANT SCIENCE 2019; 9:1901. [PMID: 30671068 PMCID: PMC6331541 DOI: 10.3389/fpls.2018.01901] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Accepted: 12/07/2018] [Indexed: 05/11/2023]
Abstract
Root nodule symbiosis (RNS) is a feature confined to a single clade of plants, the Fabids. Among Fabids capable of RNS, legumes form root cortex-based nodules in symbioses with rhizobia, while actinorhizal species form lateral root-based nodules with actinomycetes. Cytokinin has previously been shown to be sufficient for "pseudonodule" initiation in model legumes. Here, we tested whether this response correlates with the ability to nodulate across a range of plant species. We analyzed the formation of pseudonodules in 17 nodulating and non-nodulating legume species, and 11 non-legumes, including nodulating actinorhizal species, using light and fluorescence microscopy. Cytokinin-induced pseudonodules arising from cortical cell divisions occurred in all nodulating legume species, but not in any of the other species, including non-nodulating legumes. Pseudonodule formation was dependent on the CRE1 cytokinin receptor in Medicago truncatula. Inhibition of root growth by cytokinin occurred across plant groups, indicating that pseudonodule development is the result of a specific cortical cytokinin response unique to nodulating legumes. Lack of a cortical cytokinin response from the Arabidopsis thaliana cytokinin reporter TCSn::GFP supported this hypothesis. Our results suggest that the ability to form cortical cell-derived nodules was gained in nodulating legumes, and likely lost in non-nodulating legumes, due to a specific root cortical response to cytokinin.
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Affiliation(s)
- Christopher Gauthier-Coles
- Division of Plant Sciences, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | | | - Ulrike Mathesius
- Division of Plant Sciences, Research School of Biology, Australian National University, Canberra, ACT, Australia
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59
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Yoro E, Nishida H, Ogawa-Ohnishi M, Yoshida C, Suzaki T, Matsubayashi Y, Kawaguchi M. PLENTY, a hydroxyproline O-arabinosyltransferase, negatively regulates root nodule symbiosis in Lotus japonicus. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:507-517. [PMID: 30351431 PMCID: PMC6322572 DOI: 10.1093/jxb/ery364] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2018] [Accepted: 10/12/2018] [Indexed: 05/21/2023]
Abstract
Legumes can survive in nitrogen-deficient environments by forming root-nodule symbioses with rhizobial bacteria; however, forming nodules consumes energy, and nodule numbers must thus be strictly controlled. Previous studies identified major negative regulators of nodulation in Lotus japonicus, including the small peptides CLAVATA3/ESR (CLE)-RELATED-ROOT SIGNAL1 (CLE-RS1), CLE-RS2, and CLE-RS3, and their putative major receptor HYPERNODULATION AND ABERRANT ROOT FORMATION1 (HAR1). CLE-RS2 is known to be expressed in rhizobia-inoculated roots, and is predicted to be post-translationally arabinosylated, a modification essential for its activity. Moreover, all three CLE-RSs suppress nodulation in a HAR1-dependent manner. Here, we identified PLENTY as a gene responsible for the previously isolated hypernodulation mutant plenty. PLENTY encoded a hydroxyproline O-arabinosyltransferase orthologous to ROOT DETERMINED NODULATION1 in Medicago truncatula. PLENTY was localized to the Golgi, and an in vitro analysis of the recombinant protein demonstrated its arabinosylation activity, indicating that CLE-RS1/2/3 may be substrates for PLENTY. The constitutive expression experiments showed that CLE-RS3 was the major candidate substrate for PLENTY, suggesting the substrate preference of PLENTY for individual CLE-RS peptides. Furthermore, a genetic analysis of the plenty har1 double mutant indicated the existence of another PLENTY-dependent and HAR1-independent pathway negatively regulating nodulation.
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Affiliation(s)
- Emiko Yoro
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi, Japan
- Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies (SOKENDAI), Okazaki, Aichi, Japan
| | - Hanna Nishida
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi, Japan
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Mari Ogawa-Ohnishi
- Division of Biological Science, Graduate School of Science, Nagoya University Chikusa, Nagoya, Japan
| | - Chie Yoshida
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi, Japan
| | - Takuya Suzaki
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi, Japan
- Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies (SOKENDAI), Okazaki, Aichi, Japan
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Yoshikatsu Matsubayashi
- Division of Biological Science, Graduate School of Science, Nagoya University Chikusa, Nagoya, Japan
| | - Masayoshi Kawaguchi
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi, Japan
- Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies (SOKENDAI), Okazaki, Aichi, Japan
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60
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Suzaki T, Takeda N, Nishida H, Hoshino M, Ito M, Misawa F, Handa Y, Miura K, Kawaguchi M. LACK OF SYMBIONT ACCOMMODATION controls intracellular symbiont accommodation in root nodule and arbuscular mycorrhizal symbiosis in Lotus japonicus. PLoS Genet 2019; 15:e1007865. [PMID: 30605473 PMCID: PMC6317779 DOI: 10.1371/journal.pgen.1007865] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 11/30/2018] [Indexed: 11/19/2022] Open
Abstract
Nitrogen-fixing rhizobia and arbuscular mycorrhizal fungi (AMF) form symbioses with plant roots and these are established by precise regulation of symbiont accommodation within host plant cells. In model legumes such as Lotus japonicus and Medicago truncatula, rhizobia enter into roots through an intracellular invasion system that depends on the formation of a root-hair infection thread (IT). While IT-mediated intracellular rhizobia invasion is thought to be the most evolutionarily derived invasion system, some studies have indicated that a basal intercellular invasion system can replace it when some nodulation-related factors are genetically modified. In addition, intracellular rhizobia accommodation is suggested to have a similar mechanism as AMF accommodation. Nevertheless, our understanding of the underlying genetic mechanisms is incomplete. Here we identify a L. japonicus nodulation-deficient mutant, with a mutation in the LACK OF SYMBIONT ACCOMMODATION (LAN) gene, in which root-hair IT formation is strongly reduced, but intercellular rhizobial invasion eventually results in functional nodule formation. LjLAN encodes a protein that is homologous to Arabidopsis MEDIATOR 2/29/32 possibly acting as a subunit of a Mediator complex, a multiprotein complex required for gene transcription. We also show that LjLAN acts in parallel with a signaling pathway including LjCYCLOPS. In addition, the lan mutation drastically reduces the colonization levels of AMF. Taken together, our data provide a new factor that has a common role in symbiont accommodation process during root nodule and AM symbiosis. Symbiosis between plants and beneficial microbes such as nitrogen-fixing bacteria and arbuscular mycorrhizal fungi has enabled plant colonization of new environments. Root nodule symbiosis with nitrogen-fixing rhizobia enables sessile plants to survive in a nitrogen-deficient environment. To establish the symbiosis, host plant cells need to accommodate rhizobia during nodule development, a process mediated by a plant-derived intracellular structure called the infection thread (IT). In this study, we show that LACK OF SYMBIONT ACCOMMODATION (LAN) is involved in intracellular rhizobia accommodation in the model leguminous plant Lotus japonicus. LjLAN encodes a putative subunit of Mediator complex, a multiprotein complex that has a fundamental role as an activator of gene transcription. Mutation analysis suggests that LjLAN is required for root hair IT formation, which enables swift and efficient rhizobial accommodation. Moreover, we show that LjLAN is required for symbiosis with arbuscular mycorrhizal fungi. These data add a new component to the molecular mechanism relevant to the establishment of root nodule and arbuscular mycorrhizal symbiosis.
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Affiliation(s)
- Takuya Suzaki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
- College of Biological Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
- Tsukuba Plant-Innovation Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan
- * E-mail:
| | - Naoya Takeda
- Graduate School of Science and Technology, Kwansei Gakuin University, Mita, Hyogo, Japan
| | - Hanna Nishida
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Motomi Hoshino
- College of Biological Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Momoyo Ito
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Fumika Misawa
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | | | - Kenji Miura
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
- College of Biological Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
- Tsukuba Plant-Innovation Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Masayoshi Kawaguchi
- National Institute for Basic Biology, Okazaki, Aichi, Japan
- School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi, Japan
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61
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Nadzieja M, Stougaard J, Reid D. A Toolkit for High Resolution Imaging of Cell Division and Phytohormone Signaling in Legume Roots and Root Nodules. FRONTIERS IN PLANT SCIENCE 2019; 10:1000. [PMID: 31428118 PMCID: PMC6688427 DOI: 10.3389/fpls.2019.01000] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Accepted: 07/17/2019] [Indexed: 05/22/2023]
Abstract
Legume plants benefit from a nitrogen-fixing symbiosis in association with rhizobia hosted in specialized root nodules. Formation of root nodules is initiated by de novo organogenesis and coordinated infection of these developing lateral root organs by rhizobia. Both bacterial infection and nodule organogenesis involve cell cycle activation and regulation by auxin and cytokinin is tightly integrated in the process. To characterize the hormone dynamics and cell division patterns with cellular resolution during nodulation, sensitive and specific sensors suited for imaging of multicellular tissues are required. Here we report a modular toolkit, optimized in the model legume Lotus japonicus, for use in legume roots and root nodules. This toolkit includes synthetic transcriptional reporters for auxin and cytokinin, auxin accumulation sensors and cell cycle progression markers optimized for fluorescent and bright field microscopy. The developed vectors allow for efficient one-step assembly of multiple units using the GoldenGate cloning system. Applied together with a fluorescence-compatible clearing approach, these reporters improve imaging depth and facilitate fluorescence examination in legume roots. We additionally evaluate the utility of the dynamic gravitropic root response in altering the timing and location of auxin accumulation and nodule emergence. We show that alteration of auxin distribution in roots allows for preferential nodule emergence at the outer side of the bend corresponding to a region of high auxin signaling capacity. The presented tools and procedures open new possibilities for comparative mutant studies and for developing a more comprehensive understanding of legume-rhizobia interactions.
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Demina IV, Maity PJ, Nagchowdhury A, Ng JLP, van der Graaff E, Demchenko KN, Roitsch T, Mathesius U, Pawlowski K. Accumulation of and Response to Auxins in Roots and Nodules of the Actinorhizal Plant Datisca glomerata Compared to the Model Legume Medicago truncatula. FRONTIERS IN PLANT SCIENCE 2019; 10:1085. [PMID: 31608077 PMCID: PMC6773980 DOI: 10.3389/fpls.2019.01085] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Accepted: 08/09/2019] [Indexed: 05/13/2023]
Abstract
Actinorhizal nodules are structurally different from legume nodules and show a greater similarity to lateral roots. Because of the important role of auxins in lateral root and nodule formation, auxin profiles were examined in roots and nodules of the actinorhizal species Datisca glomerata and the model legume Medicago truncatula. The auxin response in roots and nodules of both species was analyzed in transgenic root systems expressing a beta-glucuronidase gene under control of the synthetic auxin-responsive promoter DR5. The effects of two different auxin on root development were compared for both species. The auxin present in nodules at the highest levels was phenylacetic acid (PAA). No differences were found between the concentrations of active auxins of roots vs. nodules, while levels of the auxin conjugate indole-3-acetic acid-alanine were increased in nodules compared to roots of both species. Because auxins typically act in concert with cytokinins, cytokinins were also quantified. Concentrations of cis-zeatin and some glycosylated cytokinins were dramatically increased in nodules compared to roots of D. glomerata, but not of M. truncatula. The ratio of active auxins to cytokinins remained similar in nodules compared to roots in both species. The auxin response, as shown by the activation of the DR5 promoter, seemed significantly reduced in nodules compared to roots of both species, suggesting the accumulation of auxins in cell types that do not express the signal transduction pathway leading to DR5 activation. Effects on root development were analyzed for the synthetic auxin naphthaleneacetic acid (NAA) and PAA, the dominant auxin in nodules. Both auxins had similar effects, except that the sensitivity of roots to PAA was lower than to NAA. However, while the effects of both auxins on primary root growth were similar for both species, effects on root branching were different: both auxins had the classical positive effect on root branching in M. truncatula, but a negative effect in D. glomerata. Such a negative effect of exogenous auxin on root branching has previously been found for a cucurbit that forms lateral root primordia in the meristem of the parental root; however, root branching in D. glomerata does not follow that pattern.
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Affiliation(s)
- Irina V. Demina
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
| | - Pooja Jha Maity
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
| | - Anurupa Nagchowdhury
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
| | - Jason L. P. Ng
- Division of Plant Science, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Eric van der Graaff
- Department of Plant Physiology, Karl-Franzens-Universität Graz, Graz, Austria
| | - Kirill N. Demchenko
- Laboratory of Cellular and Molecular Mechanisms of Plant Development, Komarov Botanical Institute, Russian Academy of Sciences, Saint-Petersburg, Russia
- Laboratory of Molecular and Cellular Biology, All-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, Russia
| | - Thomas Roitsch
- Department of Plant Physiology, Karl-Franzens-Universität Graz, Graz, Austria
| | - Ulrike Mathesius
- Division of Plant Science, Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Katharina Pawlowski
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
- *Correspondence: Katharina Pawlowski,
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Wang J, Andersen SU, Ratet P. Editorial: Molecular and Cellular Mechanisms of the Legume-Rhizobia Symbiosis. FRONTIERS IN PLANT SCIENCE 2018; 9:1839. [PMID: 30631330 PMCID: PMC6315174 DOI: 10.3389/fpls.2018.01839] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Accepted: 11/27/2018] [Indexed: 05/22/2023]
Affiliation(s)
- Jianping Wang
- Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
- Agronomy Department, University of Florida, Gainesville, FL, United States
| | | | - Pascal Ratet
- Institute of Plant Sciences Paris-Saclay IPS2, CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, Orsay, France
- Institute of Plant Sciences Paris-Saclay, Paris Diderot, Sorbonne Paris-Cité, Orsay, France
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64
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Revealing the roles of y4wF and tidC genes in Rhizobium tropici CIAT 899: biosynthesis of indolic compounds and impact on symbiotic properties. Arch Microbiol 2018; 201:171-183. [PMID: 30535938 DOI: 10.1007/s00203-018-1607-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2018] [Revised: 11/26/2018] [Accepted: 12/03/2018] [Indexed: 01/06/2023]
Abstract
Rhizobium tropici CIAT 899 is a strain known by its ability to nodulate a broad range of legume species, to synthesize a variety of Nod factors, its tolerance of abiotic stresses, and its high capacity to fix atmospheric N2, especially in symbiosis with common bean (Phaseolus vulgaris L.). Genes putatively related to the synthesis of indole acetic acid (IAA) have been found in the symbiotic plasmid of CIAT 899, in the vicinity of the regulatory nodulation gene nodD5, and, in this study, we obtained mutants for two of these genes, y4wF and tidC (R. tropiciindole-3-pyruvic acid decarboxylase), and investigated their expression in the absence and presence of tryptophan (TRP) and apigenin (API). In general, mutations of both genes increased exopolysaccharide (EPS) synthesis and did not affect swimming or surface motility; mutations also delayed nodule formation, but increased competitiveness. We found that the indole-3-acetamide (IAM) pathway was active in CIAT 899 and not affected by the mutations, and-noteworthy-that API was required to activate the tryptamine (TAM) and the indol-3-pyruvic acid (IPyA) pathways in all strains, particularly in the mutants. High up-regulation of y4wF and tidC genes was observed in both the wild-type and the mutant strains in the presence of API. The results obtained revealed an intriguing relationship between IAA metabolism and nod-gene-inducing activity in R. tropici CIAT 899. We discuss the IAA pathways, and, based on our results, we attribute functions to the y4wF and tidC genes of R. tropici.
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65
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Fisher J, Gaillard P, Fellbaum CR, Subramanian S, Smith S. Quantitative 3D imaging of cell level auxin and cytokinin response ratios in soybean roots and nodules. PLANT, CELL & ENVIRONMENT 2018; 41:2080-2092. [PMID: 29469230 DOI: 10.1111/pce.13169] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 02/07/2018] [Accepted: 02/09/2018] [Indexed: 05/08/2023]
Abstract
Legume-Rhizobium symbiosis results in root nodules where rhizobia fix atmospheric nitrogen into plant usable forms in exchange for plant-derived carbohydrates. The development of these specialized root organs involves a set of carefully orchestrated plant hormone signalling. In particular, a spatio-temporal balance between auxin and cytokinin appears to be crucial for proper nodule development. We put together a construct that carried nuclear localized fluorescence sensors for auxin and cytokinin and used two photon induced fluorescence microscopy for concurrent quantitative 3-dimensional imaging to determine cellular level auxin and cytokinin outputs and ratios in root and nodule tissues of soybean. The use of nuclear localization signals on the markers and nuclei segmentation during image processing enabled accurate monitoring of outputs in 3D image volumes. The ratiometric method used here largely compensates for variations in individual outputs due to sample turbidity and scattering, an inherent issue when imaging thick root and nodule samples typical of many legumes. Overlays of determined auxin/cytokinin ratios on specific root zones and cell types accurately reflected those predicted based on previously reported outputs for each hormone individually. Importantly, distinct auxin/cytokinin ratios corresponded to distinct nodule cell types indicating a key role for these hormones in nodule cell type identity.
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Affiliation(s)
- Jon Fisher
- Nanoscience and Nanoengineering, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA
| | - Paul Gaillard
- Department of Agronomy, Horticulture, and Plant Science, South Dakota State University, Brookings, SD, 57007, USA
| | - Carl R Fellbaum
- Department of Agronomy, Horticulture, and Plant Science, South Dakota State University, Brookings, SD, 57007, USA
| | - Senthil Subramanian
- Department of Agronomy, Horticulture, and Plant Science, South Dakota State University, Brookings, SD, 57007, USA
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Steve Smith
- Nanoscience and Nanoengineering, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA
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66
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Barraza A, Coss-Navarrete EL, Vizuet-de-Rueda JC, Martínez-Aguilar K, Hernández-Chávez JL, Ordaz-Ortiz JJ, Winkler R, Tiessen A, Alvarez-Venegas R. Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.). PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2018; 274:45-58. [PMID: 30080634 DOI: 10.1016/j.plantsci.2018.05.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 05/09/2018] [Accepted: 05/14/2018] [Indexed: 06/08/2023]
Abstract
The legume-rhizobium symbiotic relationship has been widely studied and characterized. However, little information is available about the role of histone lysine methyltransferases in the legume-rhizobium interaction and in the formation of nitrogen-fixing nodules in the common bean. Thus, this study aimed to gain a better understanding of the epigenetic control of nodulation in the common bean. Specifically, we studied the role of PvTRX1h, a histone lysine methyltransferase coding gene, in nodule development and auxin biosynthesis. Through a reverse genetics approach, we generated common bean composite plants to knock-down PvTRX1h expression. Here we found that the down-regulation of PvTRX1h increased the number of nodules per plant, but reduced the number of colony-forming units recovered from nodules. Genes coding for enzymes involved in the synthesis of the indole-3-acetic acid were up-regulated, as was the concentration of this hormone. In addition, PvTRX1h down-regulation altered starch accumulation as determined by the number of amyloplasts per nodule. Metabolic fingerprinting by direct liquid introduction-electrospray ionization-mass spectrometry (DLI-ESI-MS) revealed that the root nodules were globally affected by PvTRX1h down-regulation. Therefore, PvTRX1h likely acts through chromatin histone modifications that alter the auxin signaling network to determine bacterial colonization, nodule number, starch accumulation, hormone levels, and cell proliferation.
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Affiliation(s)
- Aarón Barraza
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico
| | - Evelia Lorena Coss-Navarrete
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico
| | - Juan Carlos Vizuet-de-Rueda
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico
| | - Keren Martínez-Aguilar
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico
| | - José Luis Hernández-Chávez
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico
| | - José Juan Ordaz-Ortiz
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad de Genómica Avanzada, Guanajuato, Mexico
| | - Robert Winkler
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico
| | - Axel Tiessen
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico
| | - Raúl Alvarez-Venegas
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Guanajuato, C.P. 36824, Mexico.
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67
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Liu H, Zhang C, Yang J, Yu N, Wang E. Hormone modulation of legume-rhizobial symbiosis. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2018; 60:632-648. [PMID: 29578639 DOI: 10.1111/jipb.12653] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2018] [Accepted: 03/23/2018] [Indexed: 05/16/2023]
Abstract
Leguminous plants can establish symbiotic associations with diazotropic rhizobia to form nitrogen-fixating nodules, which are classified as determinate or indeterminate based on the persistence of nodule meristem. The formation of nitrogen-fixing nodules requires coordinating rhizobial infection and root nodule organogenesis. The formation of an infection thread and the extent of nodule formation are largely under plant control, but vary with environmental conditions and the physiological state of the host plants. Many achievements in these two areas have been made in recent decades. Phytohormone signaling pathways have gradually emerged as important regulators of root nodule symbiosis. Cytokinin, strigolactones (SLs) and local accumulation of auxin can promote nodule development. Ethylene, jasmonic acid (JA), abscisic acid (ABA) and gibberellic acid (GA) all negatively regulate infection thread formation and nodule development. However, salicylic acid (SA) and brassinosteroids (BRs) have different effects on the formation of these two nodule types. Some peptide hormones are also involved in nodulation. This review summarizes recent findings on the roles of these plant hormones in legume-rhizobial symbiosis, and we propose that DELLA proteins may function as a node to integrate plant hormones to regulate nodulation.
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Affiliation(s)
- Huan Liu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Chi Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Jun Yang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Nan Yu
- College of Life and Environment Sciences, Shanghai Normal University, Shanghai 200234, China
| | - Ertao Wang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
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68
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Nishida H, Suzaki T. Nitrate-mediated control of root nodule symbiosis. CURRENT OPINION IN PLANT BIOLOGY 2018; 44:129-136. [PMID: 29684704 DOI: 10.1016/j.pbi.2018.04.006] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Revised: 04/02/2018] [Accepted: 04/05/2018] [Indexed: 05/14/2023]
Abstract
Nitrogen is an indispensable inorganic nutrient that is required by plants throughout their life. Root nodule symbiosis (RNS) is an important strategy mainly adopted by legumes to enhance nitrogen acquisition, where several key processes required for the establishment of the symbiosis, are pleiotropically controlled by nitrate availability in soil. Although the autoregulation of nodulation (AON), a systemic long-range signaling, has been suggested to be implicated in nitrate-induced control of RNS, AON alone is insufficient to fully explain the pleiotropic regulation that is induced by nitrate. A recent elucidation of the function of a NIN-LIKE PROTEIN transcription factor has provided greater insights into the genetic mechanisms underlying nitrate-induced control of RNS in varying nitrate environments.
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Affiliation(s)
- Hanna Nishida
- National Institute for Basic Biology, Okazaki, Aichi, Japan; School of Life Science, SOKENDAI (The Graduate University for Advanced Studies), Okazaki, Aichi, Japan; Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Takuya Suzaki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
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69
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Nadzieja M, Kelly S, Stougaard J, Reid D. Epidermal auxin biosynthesis facilitates rhizobial infection in Lotus japonicus. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 95:101-111. [PMID: 29676826 DOI: 10.1111/tpj.13934] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 03/29/2018] [Accepted: 04/05/2018] [Indexed: 05/08/2023]
Abstract
Symbiotic nitrogen fixation in legumes requires nodule organogenesis to be coordinated with infection by rhizobia. The plant hormone auxin influences symbiotic infection, but the precise timing of auxin accumulation and the genetic network governing it remain unclear. We used a Lotus japonicus optimised variant of the DII-based auxin accumulation sensor and identified a rapid accumulation of auxin in the epidermis, specifically in the root hair cells. This auxin accumulation occurs in the infected root hairs during rhizobia invasion, while Nod factor application induces this response across a broader range of root hairs. Using the DR5 auxin responsive promoter, we demonstrate that activation of auxin signalling also occurs specifically in infected root hairs. Analysis of root hair transcriptome data identified induction of an auxin biosynthesis gene of the Tryptophan Amino-transferase Related (LjTar1) family following both bacteria inoculation and Nod factor treatment. Genetic analysis showed that both expression of the LjTar1 biosynthesis gene and the auxin response requires Nod factor perception, while common symbiotic pathway transcription factors are only partially required or act redundantly to initiate auxin accumulation. Using a chemical genetics approach, we confirmed that auxin biosynthesis has a functional role in promoting symbiotic infection events in the epidermis.
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Affiliation(s)
- Marcin Nadzieja
- Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10, Aarhus C, 8000, Denmark
| | - Simon Kelly
- Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10, Aarhus C, 8000, Denmark
| | - Jens Stougaard
- Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10, Aarhus C, 8000, Denmark
| | - Dugald Reid
- Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10, Aarhus C, 8000, Denmark
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70
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Lace B, Ott T. Commonalities and Differences in Controlling Multipartite Intracellular Infections of Legume Roots by Symbiotic Microbes. PLANT & CELL PHYSIOLOGY 2018; 59:661-672. [PMID: 29474692 DOI: 10.1093/pcp/pcy043] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Indexed: 05/11/2023]
Abstract
Legumes have the almost unique ability to establish symbiotic associations with rhizobia and arbuscular mycorrhizal fungi. Forward and reverse genetics have identified a large number of genes that are required for either or both interactions. However, and in sharp contrast to natural soils, these interactions have been almost exclusively investigated under laboratory conditions by using separate inoculation systems, whereas both symbionts are simultaneously present in the field. Considering our recent understanding of the individual symbioses, the community is now promisingly positioned to co-inoculate plants with two or more microbes in order to understand mechanistically how legumes efficiently balance, regulate and potentially separate these symbioses and other endophytic microbes within the same root. Here, we discuss a number of key control layers that should be considered when assessing tri- or multipartite beneficial interactions and that may contribute to colonization patterns in legume roots.
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Affiliation(s)
- Beatrice Lace
- University of Freiburg, Faculty of Biology, Cell Biology, Schänzlestr. 1, D-79104 Freiburg, Germany
| | - Thomas Ott
- University of Freiburg, Faculty of Biology, Cell Biology, Schänzlestr. 1, D-79104 Freiburg, Germany
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71
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Imin N, Patel N, Corcilius L, Payne RJ, Djordjevic MA. CLE peptide tri-arabinosylation and peptide domain sequence composition are essential for SUNN-dependent autoregulation of nodulation in Medicago truncatula. THE NEW PHYTOLOGIST 2018; 218:73-80. [PMID: 29393515 DOI: 10.1111/nph.15019] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Accepted: 01/09/2018] [Indexed: 05/23/2023]
Abstract
MtCLE12 and MtCLE13 encode CLAVATA3/EMBRYO-SURROUNDING REGION RELATED (CLE) peptides which regulate autoregulation of nodulation (AON) in Medicago through the shoot receptor, SUNN (SUPER NUMERIC NODULES). Genetics suggests RDN1 (ROOT-DETERMINED NODULATION 1) arabinosylates MtCLE12 to enable SUNN perception. The functional structures of MtCLE12 and MtCLE13 peptides, however, remain elusive. We combined genetic and chemical synthesis approaches to determine if glyco-modifications of three nodule-expressed CLE peptides are essential for AON. We also examined how root and shoot applied AON-CLEs inhibit nodulation. MtCLE12, MtCLE13 and MtCLE42 peptides were synthesized with hydroxylation, mono-arabinosylation or tri-arabinosylation (TaP) at proline 7. Only MtCLE12-TaP and MtCLE13-TaP peptides induced AON in wild-type (WT) and rdn1-1, but not in sunn-4. The application of MtCLE13-TaP to cotyledons 1 d before rhizobial inoculation completely inhibited both rhizobial infection and nodulation. By contrast, MtCLE12-TaP induced significant AON without abolishing rhizobial infection. The results indicate that key CLE domain amino acids and TaP modifications to MtCLE12 and MtCLE13 are essential for SUNN-dependent AON. We also show evidence that RDN1 does not tri-arabinosylate MtCLE13. Finally, MtCLE13-TaP can induce a strong AON response in shoots that inhibits the entire symbiotic processes in roots. We present a new model for AON in Medicago.
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Affiliation(s)
- Nijat Imin
- Division of Plant Science, Research School of Biology, The Australian National University, Canberra, ACT2601, Australia
| | - Neha Patel
- Division of Plant Science, Research School of Biology, The Australian National University, Canberra, ACT2601, Australia
| | - Leo Corcilius
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
| | - Richard J Payne
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
| | - Michael A Djordjevic
- Division of Plant Science, Research School of Biology, The Australian National University, Canberra, ACT2601, Australia
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Ng JLP, Mathesius U. Acropetal Auxin Transport Inhibition Is Involved in Indeterminate But Not Determinate Nodule Formation. FRONTIERS IN PLANT SCIENCE 2018; 9:169. [PMID: 29497432 PMCID: PMC5818462 DOI: 10.3389/fpls.2018.00169] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 01/30/2018] [Indexed: 05/23/2023]
Abstract
Legumes enter into a symbiotic relationship with nitrogen-fixing rhizobia, leading to nodule development. Two main types of nodules have been widely studied, indeterminate and determinate, which differ in the location of the first cell division in the root cortex, and persistency of the nodule meristem. Here, we compared the control of auxin transport, content, and response during the early stages of indeterminate and determinate nodule development in the model legumes Medicago truncatula and Lotus japonicus, respectively, to investigate whether differences in auxin transport control could explain the differences in the location of cortical cell divisions. While auxin responses were activated in dividing cortical cells during nodulation of both nodule types, auxin (indole-3-acetic acid) content at the nodule initiation site was transiently increased in M. truncatula, but transiently reduced in L. japonicus. Root acropetal auxin transport was reduced in M. truncatula at the very start of nodule initiation, in contrast to a prolonged increase in acropetal auxin transport in L. japonicus. The auxin transport inhibitors 2,3,5-triiodobenzoic acid and 1-N-naphthylphthalamic acid (NPA) only induced pseudonodules in legume species forming indeterminate nodules, but failed to elicit such structures in a range of species forming determinate nodules. The development of these pseudonodules in M. truncatula exhibited increased auxin responses in a small primordium formed from the pericycle, endodermis, and inner cortex, similar to rhizobia-induced nodule primordia. In contrast, a diffuse cortical auxin response and no associated cortical cell divisions were found in L. japonicus. Collectively, we hypothesize that a step of acropetal auxin transport inhibition is unique to the process of indeterminate nodule development, leading to auxin responses in pericycle, endodermis, and inner cortex cells, while increased auxin responses in outer cortex cells likely require a different mechanism during the formation of determinate nodules.
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Affiliation(s)
- Jason L. P. Ng
- Division of Plant Sciences, Research School of Biology, Australian National University, Canberra, ACT, Australia
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Nishida H, Tanaka S, Handa Y, Ito M, Sakamoto Y, Matsunaga S, Betsuyaku S, Miura K, Soyano T, Kawaguchi M, Suzaki T. A NIN-LIKE PROTEIN mediates nitrate-induced control of root nodule symbiosis in Lotus japonicus. Nat Commun 2018; 9:499. [PMID: 29403008 PMCID: PMC5799372 DOI: 10.1038/s41467-018-02831-x] [Citation(s) in RCA: 120] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 01/03/2018] [Indexed: 02/07/2023] Open
Abstract
Legumes and rhizobia establish symbiosis in root nodules. To balance the gains and costs associated with the symbiosis, plants have developed two strategies for adapting to nitrogen availability in the soil: plants can regulate nodule number and/or stop the development or function of nodules. Although the former is accounted for by autoregulation of nodulation, a form of systemic long-range signaling, the latter strategy remains largely enigmatic. Here, we show that the Lotus japonicus NITRATE UNRESPONSIVE SYMBIOSIS 1 (NRSYM1) gene encoding a NIN-LIKE PROTEIN transcription factor acts as a key regulator in the nitrate-induced pleiotropic control of root nodule symbiosis. NRSYM1 accumulates in the nucleus in response to nitrate and directly regulates the production of CLE-RS2, a root-derived mobile peptide that acts as a negative regulator of nodule number. Our data provide the genetic basis for how plants respond to the nitrogen environment and control symbiosis to achieve proper plant growth.
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Affiliation(s)
- Hanna Nishida
- National Institute for Basic Biology, Okazaki, Aichi, Japan.,School of Life Science, SOKENDAI (The Graduate University for Advanced Studies), Okazaki, Aichi, Japan.,Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Sachiko Tanaka
- National Institute for Basic Biology, Okazaki, Aichi, Japan
| | | | - Momoyo Ito
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Yuki Sakamoto
- Imaging Frontier Center, Organization for Research Advancement, Tokyo University of Science, Noda, Chiba, Japan
| | - Sachihiro Matsunaga
- Imaging Frontier Center, Organization for Research Advancement, Tokyo University of Science, Noda, Chiba, Japan.,Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Chiba, Japan
| | - Shigeyuki Betsuyaku
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Kenji Miura
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Takashi Soyano
- National Institute for Basic Biology, Okazaki, Aichi, Japan.,School of Life Science, SOKENDAI (The Graduate University for Advanced Studies), Okazaki, Aichi, Japan
| | - Masayoshi Kawaguchi
- National Institute for Basic Biology, Okazaki, Aichi, Japan.,School of Life Science, SOKENDAI (The Graduate University for Advanced Studies), Okazaki, Aichi, Japan
| | - Takuya Suzaki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
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74
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Kundu A, DasGupta M. Silencing of Putative Cytokinin Receptor Histidine Kinase1 Inhibits Both Inception and Differentiation of Root Nodules in Arachis hypogaea. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2018; 31:187-199. [PMID: 28876173 DOI: 10.1094/mpmi-06-17-0144-r] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Rhizobia-legume interaction activates the SYM pathway that recruits cytokinin signaling for induction of nodule primordia in the cortex. In Arachis hypogaea, bradyrhizobia invade through natural cracks developed in the lateral root base and are directly endocytosed in the cortical cells to generate the nodule primordia. To unravel the role of cytokinin signaling in A. hypogaea, RNA-interference (RNAi) of cytokinin receptor histidine-kinase1 (AhHK1) was done. AhHK1-RNAi downregulated the expression of type-A response regulators such as AhRR5 and AhRR3 along with several symbiotic genes, indicating that both cytokinin signaling and the SYM pathway were affected. Accordingly, there was a drastic downregulation of nodulation in AhHK1-RNAi roots and the nodules that developed were ineffective. These nodules were densely packed, with infected cells having a higher nucleo-cytoplasmic ratio and distinctively high mitotic index, where the rod-shaped rhizobia failed to differentiate into bacteroids within spherical symbiosomes. In accordance with the proliferating state, expression of a mitotic-cyclin AhCycB2.1 was higher in AhHK1-RNAi nodules, whereas expression of a retinoblastoma-related (AhRBR) nodule that restrains proliferation was lower. Also, higher expression of the meristem maintenance factor WUSCHEL-RELATED HOMEOBOX5 correlated with the undifferentiated state of AhHK1-RNAi nodules. Our results suggest that AhHK1-mediated cytokinin signaling is important for both inception and differentiation during nodule development in A. hypogaea.
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Affiliation(s)
- Anindya Kundu
- Department of Biochemistry, University of Calcutta, Kolkata 700019, India
| | - Maitrayee DasGupta
- Department of Biochemistry, University of Calcutta, Kolkata 700019, India
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75
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Kohlen W, Ng JLP, Deinum EE, Mathesius U. Auxin transport, metabolism, and signalling during nodule initiation: indeterminate and determinate nodules. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:229-244. [PMID: 28992078 DOI: 10.1093/jxb/erx308] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Most legumes can form a unique type of lateral organ on their roots: root nodules. These structures host symbiotic nitrogen-fixing bacteria called rhizobia. Several different types of nodules can be found in nature, but the two best-studied types are called indeterminate and determinate nodules. These two types differ with respect to the presence or absence of a persistent nodule meristem, which consistently correlates with the cortical cell layers giving rise to the nodule primordia. Similar to other plant developmental processes, auxin signalling overlaps with the site of organ initiation and meristem activity. Here, we review how auxin contributes to early nodule development. We focus on changes in auxin transport, signalling, and metabolism during nodule initiation, describing both experimental evidence and computer modelling. We discuss how indeterminate and determinate nodules may differ in their mechanisms for generating localized auxin response maxima and highlight outstanding questions for future research.
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Affiliation(s)
- Wouter Kohlen
- Laboratory for Molecular Biology, Wageningen University & Research, The Netherlands
| | - Jason Liang Pin Ng
- Division of Plant Science, Research School of Biology, The Australian National University, Australia
| | - Eva E Deinum
- Mathematical and Statistical Methods, Wageningen University & Research, The Netherlands
| | - Ulrike Mathesius
- Division of Plant Science, Research School of Biology, The Australian National University, Australia
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76
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Nanjareddy K, Arthikala MK, Aguirre AL, Gómez BM, Lara M. Plant Promoter Analysis: Identification and Characterization of Root Nodule Specific Promoter in the Common Bean. J Vis Exp 2017. [PMID: 29364203 DOI: 10.3791/56140] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
The upstream sequences of gene coding sequences are termed as promoter sequences. Studying the expression patterns of promoters are very significant in understanding the gene regulation and spatiotemporal expression patterns of target genes. On the other hand, it is also critical to establish promoter evaluation tools and genetic transformation techniques that are fast, efficient, and reproducible. In this study, we investigated the spatiotemporal expression pattern of the rhizobial symbiosis-specific nodule inception (NIN) promoter of Phaseolus vulgaris in the transgenic hairy roots. Using plant genome databases and analysis tools we identified, isolated, and cloned the P. vulgaris NIN promoter in a transcriptional fusion to the chimeric reporter β-glucuronidase (GUS) GUS-enhanced::GFP. Further, this protocol describes a rapid and versatile system of genetic transformation in the P. vulgaris using Agrobacterium rhizogenes induced hairy roots. This system generates ≥2 cm hairy roots at 10 to 12 days after transformation. Next, we assessed the spatiotemporal expression of NIN promoter in Rhizobium inoculated hairy roots at periodic intervals of post-inoculation. Our results depicted by GUS activity show that the NIN promoter was active during the process of nodulation. Together, the present protocol demonstrates how to identify, isolate, clone, and characterize a plant promoter in the common bean hairy roots. Moreover, this protocol is easy to use in non-specialized laboratories.
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Affiliation(s)
- Kalpana Nanjareddy
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León- Universidad Nacional Autónoma de México (UNAM)
| | - Manoj-Kumar Arthikala
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León- Universidad Nacional Autónoma de México (UNAM)
| | - Alma-Leticia Aguirre
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León- Universidad Nacional Autónoma de México (UNAM)
| | - Brenda-Mariana Gómez
- Ciencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León- Universidad Nacional Autónoma de México (UNAM)
| | - Miguel Lara
- Instituto de Biología, Universidad Nacional Autónoma de México (UNAM), Ciudad Universitaria, Coyoacan;
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77
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Damodaran S, Westfall CS, Kisely BA, Jez JM, Subramanian S. Nodule-Enriched GRETCHEN HAGEN 3 Enzymes Have Distinct Substrate Specificities and Are Important for Proper Soybean Nodule Development. Int J Mol Sci 2017; 18:E2547. [PMID: 29182530 PMCID: PMC5751150 DOI: 10.3390/ijms18122547] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2017] [Revised: 11/21/2017] [Accepted: 11/23/2017] [Indexed: 11/16/2022] Open
Abstract
Legume root nodules develop as a result of a symbiotic relationship between the plant and nitrogen-fixing rhizobia bacteria in soil. Auxin activity is detected in different cell types at different stages of nodule development; as well as an enhanced sensitivity to auxin inhibits, which could affect nodule development. While some transport and signaling mechanisms that achieve precise spatiotemporal auxin output are known, the role of auxin metabolism during nodule development is unclear. Using a soybean root lateral organ transcriptome data set, we identified distinct nodule enrichment of three genes encoding auxin-deactivating GRETCHEN HAGEN 3 (GH3) indole-3-acetic acid (IAA) amido transferase enzymes: GmGH3-11/12, GmGH3-14 and GmGH3-15. In vitro enzymatic assays showed that each of these GH3 proteins preferred IAA and aspartate as acyl and amino acid substrates, respectively. GmGH3-15 showed a broad substrate preference, especially with different forms of auxin. Promoter:GUS expression analysis indicated that GmGH3-14 acts primarily in the root epidermis and the nodule primordium where as GmGH3-15 might act in the vasculature. Silencing the expression of these GH3 genes in soybean composite plants led to altered nodule numbers, maturity, and size. Our results indicate that these GH3s are needed for proper nodule maturation in soybean, but the precise mechanism by which they regulate nodule development remains to be explained.
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Affiliation(s)
- Suresh Damodaran
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD 57007, USA.
| | - Corey S Westfall
- Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
| | - Brian A Kisely
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD 57007, USA.
| | - Joseph M Jez
- Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
| | - Senthil Subramanian
- Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD 57007, USA.
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD 57007, USA.
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78
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Gamas P, Brault M, Jardinaud MF, Frugier F. Cytokinins in Symbiotic Nodulation: When, Where, What For? TRENDS IN PLANT SCIENCE 2017; 22:792-802. [PMID: 28739135 DOI: 10.1016/j.tplants.2017.06.012] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2017] [Revised: 06/12/2017] [Accepted: 06/19/2017] [Indexed: 05/21/2023]
Abstract
Substantial progress has been made in the understanding of early stages of the symbiotic interaction between legume plants and rhizobium bacteria. Those include the specific recognition of symbiotic partners, the initiation of bacterial infection in root hair cells, and the inception of a specific organ in the root cortex, the nodule. Increasingly complex regulatory networks have been uncovered in which cytokinin (CK) phytohormones play essential roles in different aspects of early symbiotic stages. Intriguingly, these roles can be either positive or negative, cell autonomous or non-cell autonomous, and vary, depending on time, root tissues, and possibly legume species. Recent developments on CK symbiotic functions and interconnections with other signaling pathways during nodule initiation are the focus of this review.
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Affiliation(s)
- Pascal Gamas
- LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France
| | - Mathias Brault
- IPS2 (Institute of Plant Sciences - Paris Saclay), CNRS, INRA, Université Paris-Sud, Université Paris-Diderot, Université d'Evry, Université Paris-Saclay, Bâtiment 630, Gif-sur-Yvette, France
| | - Marie-Françoise Jardinaud
- LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France; INPT-Université de Toulouse, ENSAT, Castanet-Tolosan, France
| | - Florian Frugier
- IPS2 (Institute of Plant Sciences - Paris Saclay), CNRS, INRA, Université Paris-Sud, Université Paris-Diderot, Université d'Evry, Université Paris-Saclay, Bâtiment 630, Gif-sur-Yvette, France.
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79
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Cai Z, Wang Y, Zhu L, Tian Y, Chen L, Sun Z, Ullah I, Li X. GmTIR1/GmAFB3-based auxin perception regulated by miR393 modulates soybean nodulation. THE NEW PHYTOLOGIST 2017; 215:672-686. [PMID: 28598036 DOI: 10.1111/nph.14632] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 04/09/2017] [Indexed: 05/08/2023]
Abstract
Auxins play important roles in the nodulation of legumes. However, the mechanism by which auxin signaling regulates root nodulation is largely unknown. In particular, the role of auxin receptors and their regulation in determinate nodule development remains elusive. We checked the expression pattern of the auxin receptor GmTIR1/GmAFB3 genes in soybean. We analyzed the functions of GmTIR1/AFB3 in the regulation of rhizobial infection and nodule number, and also tested the functions of miR393 during nodulation and its relationship with GmTIR1/AFB3. The results showed that GmTIR1 and GmAFB3 genes exhibit diverse expression patterns during nodulation and overexpression of GmTIR1 genes significantly increased inflection foci and eventual nodule number. GmTIR1/AFB3 genes were post-transcriptionally cleaved by miR393 family and knock-down of the miR393 family members significantly increased rhizobial infection and the nodule number. Overexpression of the mutated form of GmTIR1C at the miR393 cleavage site that is resistant to miR393 cleavage led to a further increase in the number of infection foci and nodules, suggesting that miR393s modulate nodulation by directly targeting GmTIR1C. This study demonstrated that GmTIR1- and GmAFB3-mediated auxin signaling, that is spatio-temporally regulated by miR393, plays a crucial role in determinate nodule development in soybean.
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Affiliation(s)
- Zhaoming Cai
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- College of Life Science and Technology, Yangtze Normal University, Chongqing, 408100, China
| | - Youning Wang
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Lin Zhu
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yinping Tian
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei, 050021, China
| | - Liang Chen
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei, 050021, China
| | - Zhengxi Sun
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei, 050021, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ihteram Ullah
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei, 050021, China
| | - Xia Li
- State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
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80
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Martin FM, Uroz S, Barker DG. Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria. Science 2017; 356:356/6340/eaad4501. [DOI: 10.1126/science.aad4501] [Citation(s) in RCA: 235] [Impact Index Per Article: 33.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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81
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Ohtsu M, Kurihara D, Sato Y, Suzaki T, Kawaguchi M, Maruyama D, Higashiyama T. Fluorescent Labeling of the Cyst Nematode Heterodera glycines in Deep-Tissue Live Imaging. CYTOLOGIA 2017. [DOI: 10.1508/cytologia.82.251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Mina Ohtsu
- Graduate School of Science, Nagoya University
| | - Daisuke Kurihara
- Graduate School of Science, Nagoya University
- JST ERATO Higashiyama Live-Holonics Project, Nagoya University
| | - Yoshikatsu Sato
- Institute of Transformative Bio-Molecules (ITbM), Nagoya University
| | - Takuya Suzaki
- Graduate School of Life and Environmental Sciences, University of Tsukuba
| | | | - Daisuke Maruyama
- Kihara Institute for Biological Research, Yokohama City University
| | - Tetsuya Higashiyama
- Graduate School of Science, Nagoya University
- JST ERATO Higashiyama Live-Holonics Project, Nagoya University
- Institute of Transformative Bio-Molecules (ITbM), Nagoya University
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82
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Hossain MS, Shrestha A, Zhong S, Miri M, Austin RS, Sato S, Ross L, Huebert T, Tromas A, Torres-Jerez I, Tang Y, Udvardi M, Murray JD, Szczyglowski K. Lotus japonicus NF-YA1 Plays an Essential Role During Nodule Differentiation and Targets Members of the SHI/STY Gene Family. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2016; 29:950-964. [PMID: 27929718 DOI: 10.1094/mpmi-10-16-0206-r] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Legume plants engage in intimate relationships with rhizobial bacteria to form nitrogen-fixing nodules, root-derived organs that accommodate the microsymbiont. Members of the Nuclear Factor Y (NF-Y) gene family, which have undergone significant expansion and functional diversification during plant evolution, are essential for this symbiotic liaison. Acting in a partially redundant manner, NF-Y proteins were shown, previously, to regulate bacterial infection, including selection of a superior rhizobial strain, and to mediate nodule structure formation. However, the exact mechanism by which these transcriptional factors exert their symbiotic functions has remained elusive. By carrying out detailed functional analyses of Lotus japonicus mutants, we demonstrate that LjNF-YA1 becomes indispensable downstream from the initial cortical cell divisions but prior to nodule differentiation, including cell enlargement and vascular bundle formation. Three affiliates of the SHORT INTERNODES/STYLISH transcription factor gene family, called STY1, STY2, and STY3, are demonstrated to be among likely direct targets of LjNF-YA1, and our results point to their involvement in nodule formation.
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Affiliation(s)
- Md Shakhawat Hossain
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
| | - Arina Shrestha
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
- 2 Department of Biology, University of Western Ontario, London, Ontario, N6A 5B7 Canada
| | - Sihui Zhong
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
| | - Mandana Miri
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
- 2 Department of Biology, University of Western Ontario, London, Ontario, N6A 5B7 Canada
| | - Ryan S Austin
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
- 2 Department of Biology, University of Western Ontario, London, Ontario, N6A 5B7 Canada
| | - Shusei Sato
- 3 Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, 980-8577, Japan; and
| | - Loretta Ross
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
| | - Terry Huebert
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
| | - Alexandre Tromas
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
| | - Ivone Torres-Jerez
- 4 Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, U.S.A
| | - Yuhong Tang
- 4 Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, U.S.A
| | - Michael Udvardi
- 4 Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, U.S.A
| | - Jeremy D Murray
- 4 Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, U.S.A
| | - Krzysztof Szczyglowski
- 1 Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, N5V 4T3 Canada
- 2 Department of Biology, University of Western Ontario, London, Ontario, N6A 5B7 Canada
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83
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Hiltenbrand R, Thomas J, McCarthy H, Dykema KJ, Spurr A, Newhart H, Winn ME, Mukherjee A. A Developmental and Molecular View of Formation of Auxin-Induced Nodule-Like Structures in Land Plants. FRONTIERS IN PLANT SCIENCE 2016; 7:1692. [PMID: 27891144 PMCID: PMC5104908 DOI: 10.3389/fpls.2016.01692] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2016] [Accepted: 10/27/2016] [Indexed: 05/21/2023]
Abstract
Several studies have shown that plant hormones play important roles during legume-rhizobia symbiosis. For instance, auxins induce the formation of nodule-like structures (NLSs) on legume roots in the absence of rhizobia. Furthermore, these NLS can be colonized by nitrogen-fixing bacteria, which favor nitrogen fixation compared to regular roots and subsequently increase plant yield. Interestingly, auxin also induces similar NLS in cereal roots. While several genetic studies have identified plant genes controlling NLS formation in legumes, no studies have investigated the genes involved in NLS formation in cereals. In this study, first we established an efficient experimental system to induce NLS in rice roots, using auxin, 2,4-D, consistently at a high frequency (>90%). We were able to induce NLS at a high frequency in Medicago truncatula under similar conditions. NLS were characterized by a broad base, a diffuse meristem, and increased cell differentiation in the vasculature. Interestingly, NLS formation appeared very similar in both rice and Medicago, suggesting a similar developmental program. We show that NLS formation in both rice and Medicago occurs downstream of the common symbiotic pathway. Furthermore, NLS formation occurs downstream of cytokinin-induced step(s). We performed a comprehensive RNA sequencing experiment to identify genes differentially expressed during NLS formation in rice and identified several promising genes for control of NLS based on their biological and molecular functions. We validated the expression patterns of several genes using reverse transcription polymerase chain reaction and show varied expression patterns of these genes during different stages of NLS formation. Finally, we show that NLS induced on rice roots under these conditions can be colonized by nitrogen-fixing bacteria, Azorhizobium caulinodans.
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Affiliation(s)
- Ryan Hiltenbrand
- Department of Biology, University of Central Arkansas, ConwayAR, USA
| | - Jacklyn Thomas
- Department of Biology, University of Central Arkansas, ConwayAR, USA
| | - Hannah McCarthy
- Department of Biology, University of Central Arkansas, ConwayAR, USA
| | - Karl J. Dykema
- Bioinformatics and Biostatistics Core, Van Andel Research Institute, Grand RapidsMI, USA
| | - Ashley Spurr
- Department of Biology, University of Central Arkansas, ConwayAR, USA
| | - Hamilton Newhart
- Department of Biology, University of Central Arkansas, ConwayAR, USA
| | - Mary E. Winn
- Bioinformatics and Biostatistics Core, Van Andel Research Institute, Grand RapidsMI, USA
| | - Arijit Mukherjee
- Department of Biology, University of Central Arkansas, ConwayAR, USA
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84
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Boivin S, Kazmierczak T, Brault M, Wen J, Gamas P, Mysore KS, Frugier F. Different cytokinin histidine kinase receptors regulate nodule initiation as well as later nodule developmental stages in Medicago truncatula. PLANT, CELL & ENVIRONMENT 2016; 39:2198-209. [PMID: 27341695 DOI: 10.1111/pce.12779] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Accepted: 06/11/2016] [Indexed: 05/08/2023]
Abstract
Legume plants adapt to low nitrogen by developing an endosymbiosis with nitrogen-fixing soil bacteria to form a new specific organ: the nitrogen-fixing nodule. In the Medicago truncatula model legume, the MtCRE1 cytokinin receptor is essential for this symbiotic interaction. As three other putative CHASE-domain containing histidine kinase (CHK) cytokinin receptors exist in M. truncatula, we determined their potential contribution to this symbiotic interaction. The four CHKs have extensive redundant expression patterns at early nodulation stages but diverge in differentiated nodules, even though MtCHK1/MtCRE1 has the strongest expression at all stages. Mutant and knock-down analyses revealed that other CHKs than MtCHK1/CRE1 are positively involved in nodule initiation, which explains the delayed nodulation phenotype of the chk1/cre1 mutant. In addition, cre1 nodules exhibit an increased growth, whereas other chk mutants have no detectable phenotype, and the maintained nitrogen fixation capacity in cre1 requires other CHK genes. Interestingly, an AHK4/CRE1 genomic locus from the aposymbiotic Arabidopsis plant rescues nodule initiation but not the nitrogen fixation capacity. This indicates that different CHK cytokinin signalling pathways regulate not only nodule initiation but also later developmental stages, and that legume-specific determinants encoded by the MtCRE1 gene are required for later nodulation stages than initiation.
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Affiliation(s)
- Stéphane Boivin
- Institute of Plant Sciences-Paris Saclay (IPS2), CNRS, INRA, Univ Paris-Sud, Univ Paris-Diderot, Univ d'Evry, Université Paris-Saclay, Bâtiment 630, 91190, Gif-sur-Yvette, France
| | - Théophile Kazmierczak
- Institute of Plant Sciences-Paris Saclay (IPS2), CNRS, INRA, Univ Paris-Sud, Univ Paris-Diderot, Univ d'Evry, Université Paris-Saclay, Bâtiment 630, 91190, Gif-sur-Yvette, France
| | - Mathias Brault
- Institute of Plant Sciences-Paris Saclay (IPS2), CNRS, INRA, Univ Paris-Sud, Univ Paris-Diderot, Univ d'Evry, Université Paris-Saclay, Bâtiment 630, 91190, Gif-sur-Yvette, France
| | - Jiangqi Wen
- Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK, USA
| | - Pascal Gamas
- Laboratoire des Interactions Plantes-Microorganismes (LIPM), Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France
| | - Kirankumar S Mysore
- Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK, USA
| | - Florian Frugier
- Institute of Plant Sciences-Paris Saclay (IPS2), CNRS, INRA, Univ Paris-Sud, Univ Paris-Diderot, Univ d'Evry, Université Paris-Saclay, Bâtiment 630, 91190, Gif-sur-Yvette, France.
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85
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Nishida H, Handa Y, Tanaka S, Suzaki T, Kawaguchi M. Expression of the CLE-RS3 gene suppresses root nodulation in Lotus japonicus. JOURNAL OF PLANT RESEARCH 2016; 129:909-919. [PMID: 27294965 DOI: 10.1007/s10265-016-0842-z] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Accepted: 05/12/2016] [Indexed: 05/21/2023]
Abstract
Cell-to-cell communication, principally mediated by short- or long-range mobile signals, is involved in many plant developmental processes. In root nodule symbiosis, a mutual relationship between leguminous plants and nitrogen-fixing rhizobia, the mechanism for the autoregulation of nodulation (AON) plays a key role in preventing the production of an excess number of nodules. AON is based on long-distance cell-to-cell communication between roots and shoots. In Lotus japonicus, two CLAVATA3/ESR-related (CLE) peptides, encoded by CLE-ROOT SIGNAL 1 (CLE-RS1) and -RS2, act as putative root-derived signals that transmit signals inhibiting further nodule development through interaction with a shoot-acting receptor-like kinase HYPERNODULATION ABERRANT ROOT FORMATION 1 (HAR1). Here, an in silico search and subsequent expression analyses enabled us to identify two new L. japonicus CLE genes that are potentially involved in nodulation, designated as CLE-RS3 and LjCLE40. Time-course expression patterns showed that CLE-RS1/2/3 and LjCLE40 expression is induced during nodulation with different activation patterns. Furthermore, constitutive expression of CLE-RS3 significantly suppressed nodule formation in a HAR1-dependent manner. TOO MUCH LOVE, a root-acting regulator of AON, is also required for the CLE-RS3 action. These results suggest that CLE-RS3 is a new component of AON in L. japonicus that may act as a potential root-derived signal through interaction with HAR1. Because CLE-RS2, CLE-RS3 and LjCLE40 are located in tandem in the genome and their expression is induced not only by rhizobial infection but also by nitrate, these genes may have duplicated from a common gene.
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Affiliation(s)
- Hanna Nishida
- National Institute for Basic Biology, Okazaki, 444-8585, Japan
- School of Life Science, The Graduate University for Advanced Studies, Okazaki, 444-8585, Japan
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, 305-8572, Japan
| | - Yoshihiro Handa
- National Institute for Basic Biology, Okazaki, 444-8585, Japan
| | - Sachiko Tanaka
- National Institute for Basic Biology, Okazaki, 444-8585, Japan
| | - Takuya Suzaki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, 305-8572, Japan.
| | - Masayoshi Kawaguchi
- National Institute for Basic Biology, Okazaki, 444-8585, Japan.
- School of Life Science, The Graduate University for Advanced Studies, Okazaki, 444-8585, Japan.
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86
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Boivin S, Fonouni-Farde C, Frugier F. How Auxin and Cytokinin Phytohormones Modulate Root Microbe Interactions. FRONTIERS IN PLANT SCIENCE 2016; 7:1240. [PMID: 27588025 PMCID: PMC4988986 DOI: 10.3389/fpls.2016.01240] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Accepted: 08/04/2016] [Indexed: 05/08/2023]
Abstract
A large range of microorganisms can associate with plants, resulting in neutral, friendly or hostile interactions. The ability of plants to recognize compatible and incompatible microorganisms and to limit or promote their colonization is therefore crucial for their survival. Elaborated communication networks determine the degree of association between the host plant and the invading microorganism. Central to these regulations of plant microbe interactions, phytohormones modulate microorganism plant associations and coordinate cellular and metabolic responses associated to the progression of microorganisms across different plant tissues. We review here hormonal regulations, focusing on auxin and cytokinin phytohormones, involved in the interactions between plant roots and soil microorganisms, including bacterial and fungi associations, either beneficial (symbiotic) or detrimental (pathogenic). The aim is to highlight similarities and differences in cytokinin/auxin functions amongst various compatible versus incompatible associations.
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Affiliation(s)
| | | | - Florian Frugier
- Institute of Plant Sciences – Paris Saclay, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Paris Diderot, Université d’Evry, Université Paris-SaclayGif-sur-Yvette, France
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87
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Lelandais-Brière C, Moreau J, Hartmann C, Crespi M. Noncoding RNAs, Emerging Regulators in Root Endosymbioses. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2016; 29:170-80. [PMID: 26894282 DOI: 10.1094/mpmi-10-15-0240-fi] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Endosymbiosis interactions allow plants to grow in nutrient-deficient soil environments. The arbuscular mycorrhizal (AM) symbiosis is an ancestral interaction between land plants and fungi, whereas nitrogen-fixing symbioses are highly specific for certain plants, notably major crop legumes. The signaling pathways triggered by specific lipochitooligosaccharide molecules involved in these interactions have common components that also overlap with plant root development. These pathways include receptor-like kinases, transcription factors (TFs), and various intermediate signaling effectors, including noncoding (nc)RNAs. These latter molecules have emerged as major regulators of gene expression and small ncRNAs, composed of micro (mi)RNAs and small interfering (si)RNAs, are known to control gene expression at transcriptional (chromatin) or posttranscriptional levels. In this review, we describe exciting recent data connecting variants of conserved si/miRNAs with the regulation of TFs, such as NSP2, NFY-A1, auxin-response factors, and AP2-like proteins, known to be involved in symbiosis. The link between hormonal regulations and these si- and miRNA-TF nodes is proposed in a model in which different feedback loops or regulations controlling endosymbiosis signaling are integrated. The diversity and emerging regulatory networks of young legume miRNAs are also highlighted.
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Affiliation(s)
- Christine Lelandais-Brière
- Institute of Plant Sciences Paris-Saclay, IPS2, Univ. Paris-Diderot, CNRS, INRA, Univ. Paris-Sud, Univ. Evry, Sorbone Paris-Cité, University of Paris-Saclay, 91405 Orsay, France
| | - Jérémy Moreau
- Institute of Plant Sciences Paris-Saclay, IPS2, Univ. Paris-Diderot, CNRS, INRA, Univ. Paris-Sud, Univ. Evry, Sorbone Paris-Cité, University of Paris-Saclay, 91405 Orsay, France
| | - Caroline Hartmann
- Institute of Plant Sciences Paris-Saclay, IPS2, Univ. Paris-Diderot, CNRS, INRA, Univ. Paris-Sud, Univ. Evry, Sorbone Paris-Cité, University of Paris-Saclay, 91405 Orsay, France
| | - Martin Crespi
- Institute of Plant Sciences Paris-Saclay, IPS2, Univ. Paris-Diderot, CNRS, INRA, Univ. Paris-Sud, Univ. Evry, Sorbone Paris-Cité, University of Paris-Saclay, 91405 Orsay, France
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88
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Geurts R, Xiao TT, Reinhold-Hurek B. What Does It Take to Evolve A Nitrogen-Fixing Endosymbiosis? TRENDS IN PLANT SCIENCE 2016; 21:199-208. [PMID: 26850795 DOI: 10.1016/j.tplants.2016.01.012] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2015] [Revised: 01/07/2016] [Accepted: 01/08/2016] [Indexed: 05/08/2023]
Abstract
Plant rhizo- and phyllospheres are exposed to a plethora of nitrogen-fixing bacteria, providing opportunities for the establishment of symbiotic associations. Nitrogen-fixing endosymbioses are most profitable and have evolved more than ten times in the angiosperms. This suggests that the evolutionary trajectory towards endosymbiosis is not complex. Here, we argue that microbe-induced cell divisions are a prerequisite for the entrance of diazotrophic prokaryotes into living plant cells. For rhizobia and Frankia bacteria, this is achieved by adapting the readout of the common symbiosis signalling pathway, such that cell divisions are induced. The common symbiosis signalling pathway is conserved in the plant kingdom and is required to establish an endosymbiosis with mycorrhizal fungi. We also discuss the adaptations that may have occurred that allowed nitrogen-fixing root nodule endosymbiosis.
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Affiliation(s)
- Rene Geurts
- Wageningen University, Department of Plant Science, Laboratory of Molecular Biology, Droevendaalsesteeg 1, 6708PB, The Netherlands.
| | - Ting Ting Xiao
- Wageningen University, Department of Plant Science, Laboratory of Molecular Biology, Droevendaalsesteeg 1, 6708PB, The Netherlands
| | - Barbara Reinhold-Hurek
- Department of Microbe-Plant Interaction, Faculty 2, University of Bremen, PO Box 33 04 40, 28334 Bremen, Germany.
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89
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Nizampatnam NR, Schreier SJ, Damodaran S, Adhikari S, Subramanian S. microRNA160 dictates stage-specific auxin and cytokinin sensitivities and directs soybean nodule development. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015; 84:140-53. [PMID: 26287653 DOI: 10.1111/tpj.12965] [Citation(s) in RCA: 75] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Revised: 07/31/2015] [Accepted: 08/13/2015] [Indexed: 05/20/2023]
Abstract
Legume nodules result from coordinated interactions between the plant and nitrogen-fixing rhizobia. The phytohormone cytokinin promotes nodule formation, and recent findings suggest that the phytohormone auxin inhibits nodule formation. Here we show that microRNA160 (miR160) is a key signaling element that determines the auxin/cytokinin balance during nodule development in soybean (Glycine max). miR160 appears to promote auxin activity by suppressing the levels of the ARF10/16/17 family of repressor ARF transcription factors. Using quantitative PCR assays and a fluorescence miRNA sensor, we show that miR160 levels are relatively low early during nodule formation and high in mature nodules. We had previously shown that ectopic expression of miR160 in soybean roots led to a severe reduction in nodule formation, coupled with enhanced sensitivity to auxin and reduced sensitivity to cytokinin. Here we show that exogenous cytokinin restores nodule formation in miR160 over-expressing roots. Therefore, low miR160 levels early during nodule development favor cytokinin activity required for nodule formation. Suppression of miR160 levels using a short tandem target mimic (STTM160) resulted in reduced sensitivity to auxin and enhanced sensitivity to cytokinin. In contrast to miR160 over-expressing roots, STTM160 roots had increased nodule formation, but nodule maturation was significantly delayed. Exogenous auxin partially restored proper nodule formation and maturation in STTM160 roots, suggesting that high miR160 activity later during nodule development favors auxin activity and promotes nodule maturation. Therefore, miR160 dictates developmental stage-specific sensitivities to auxin and cytokinin to direct proper nodule formation and maturation in soybean.
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Affiliation(s)
| | - Spencer John Schreier
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Suresh Damodaran
- Department of Plant Science, South Dakota State University, Brookings, SD, 57007, USA
| | - Sajag Adhikari
- Department of Plant Science, South Dakota State University, Brookings, SD, 57007, USA
| | - Senthil Subramanian
- Department of Plant Science, South Dakota State University, Brookings, SD, 57007, USA
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
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90
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Ng JLP, Perrine-Walker F, Wasson AP, Mathesius U. The Control of Auxin Transport in Parasitic and Symbiotic Root-Microbe Interactions. PLANTS (BASEL, SWITZERLAND) 2015; 4:606-43. [PMID: 27135343 PMCID: PMC4844411 DOI: 10.3390/plants4030606] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Revised: 08/12/2015] [Accepted: 08/18/2015] [Indexed: 01/13/2023]
Abstract
Most field-grown plants are surrounded by microbes, especially from the soil. Some of these, including bacteria, fungi and nematodes, specifically manipulate the growth and development of their plant hosts, primarily for the formation of structures housing the microbes in roots. These developmental processes require the correct localization of the phytohormone auxin, which is involved in the control of cell division, cell enlargement, organ development and defense, and is thus a likely target for microbes that infect and invade plants. Some microbes have the ability to directly synthesize auxin. Others produce specific signals that indirectly alter the accumulation of auxin in the plant by altering auxin transport. This review highlights root-microbe interactions in which auxin transport is known to be targeted by symbionts and parasites to manipulate the development of their host root system. We include case studies for parasitic root-nematode interactions, mycorrhizal symbioses as well as nitrogen fixing symbioses in actinorhizal and legume hosts. The mechanisms to achieve auxin transport control that have been studied in model organisms include the induction of plant flavonoids that indirectly alter auxin transport and the direct targeting of auxin transporters by nematode effectors. In most cases, detailed mechanisms of auxin transport control remain unknown.
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Affiliation(s)
- Jason Liang Pin Ng
- Division of Plant Science, Research School of Biology, Australian National University, Linnaeus Way, Building 134, Canberra ACT 2601, Australia.
| | | | | | - Ulrike Mathesius
- Division of Plant Science, Research School of Biology, Australian National University, Linnaeus Way, Building 134, Canberra ACT 2601, Australia.
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91
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Bensmihen S. Hormonal Control of Lateral Root and Nodule Development in Legumes. PLANTS (BASEL, SWITZERLAND) 2015; 4:523-47. [PMID: 27135340 PMCID: PMC4844399 DOI: 10.3390/plants4030523] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2015] [Revised: 07/24/2015] [Accepted: 07/29/2015] [Indexed: 11/23/2022]
Abstract
Many plants can establish symbioses with nitrogen-fixing bacteria, some of which lead to nodulation, including legumes. Indeed, in the rhizobium/legume symbiosis, new root organs, called nodules, are formed by the plant in order to host the rhizobia in protective conditions, optimized for nitrogen fixation. In this way, these plants can benefit from the reduction of atmospheric dinitrogen into ammonia by the hosted bacteria, and in exchange the plant provides the rhizobia with a carbon source. Since this symbiosis is costly for the plant it is highly regulated. Both legume nodule and lateral root organogenesis involve divisions of the root inner tissues, and both developmental programs are tightly controlled by plant hormones. In fact, most of the major plant hormones, such as auxin, cytokinins, abscisic acid, and strigolactones, control both lateral root formation and nodule organogenesis, but often in an opposite manner. This suggests that the sensitivity of legume plants to some phytohormones could be linked to the antagonism that exists between the processes of nodulation and lateral root formation. Here, we will review the implication of some major phytohormones in lateral root formation in legumes, compare them with their roles in nodulation, and discuss specificities and divergences from non-legume eudicot plants such as Arabidopsis thaliana.
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Affiliation(s)
- Sandra Bensmihen
- INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, F-31326 Castanet-Tolosan, France.
- CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, F-31326 Castanet-Tolosan, France.
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92
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Suzaki T, Yoro E, Kawaguchi M. Leguminous plants: inventors of root nodules to accommodate symbiotic bacteria. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2015; 316:111-58. [PMID: 25805123 DOI: 10.1016/bs.ircmb.2015.01.004] [Citation(s) in RCA: 95] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Legumes and a few other plant species can establish a symbiotic relationship with nitrogen-fixing rhizobia, which enables them to survive in a nitrogen-deficient environment. During the course of nodulation, infection with rhizobia induces the dedifferentiation of host cells to form primordia of a symbiotic organ, the nodule, which prepares plants to accommodate rhizobia in host cells. While these nodulation processes are known to be genetically controlled by both plants and rhizobia, recent advances in studies on two model legumes, Lotus japonicus and Medicago truncatula, have provided great insight into the underlying plant-side molecular mechanism. In this chapter, we review such knowledge, with particular emphasis on two key processes of nodulation, nodule development and rhizobial invasion.
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Affiliation(s)
- Takuya Suzaki
- National Institute for Basic Biology, Okazaki, Japan; School of Life Science, Graduate University for Advanced Studies, Okazaki, Japan
| | - Emiko Yoro
- National Institute for Basic Biology, Okazaki, Japan; School of Life Science, Graduate University for Advanced Studies, Okazaki, Japan
| | - Masayoshi Kawaguchi
- National Institute for Basic Biology, Okazaki, Japan; School of Life Science, Graduate University for Advanced Studies, Okazaki, Japan
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93
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Wang G, Zhang G, Wu M. CLE Peptide Signaling and Crosstalk with Phytohormones and Environmental Stimuli. FRONTIERS IN PLANT SCIENCE 2015; 6:1211. [PMID: 26779239 PMCID: PMC4703810 DOI: 10.3389/fpls.2015.01211] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Accepted: 12/16/2015] [Indexed: 05/07/2023]
Abstract
The CLE (CLAVATA3/Endosperm surrounding region-related) peptide family is one of the best-studied secreted peptide families in plants. Accumulated data have revealed that CLE genes play vital roles on stem cell homeostasis in different types of meristems. Additionally, CLE genes have been found to perform various biological roles in plant growth and development, and in response to environmental stimuli. With recent advances on our understanding of CLE peptide function, it is showing that the existence of potential crosstalks of CLE peptides with phytohormones and external stimuli. Complex interactions exist in which CLE petides coordinate with hormones to regulate plant growth and development, and in response to external stimuli. In this article, we present recent advances in cell-cell communication that is mediated by CLE peptides combining with phytohormones and external stimuli, and suggest additional Arabidopsis CLE genes that are likely to be controlled by hormones and environmental cues.
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94
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Suzaki T, Kawaguchi M. Root nodulation: a developmental program involving cell fate conversion triggered by symbiotic bacterial infection. CURRENT OPINION IN PLANT BIOLOGY 2014; 21:16-22. [PMID: 24996031 DOI: 10.1016/j.pbi.2014.06.002] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2014] [Revised: 05/29/2014] [Accepted: 06/05/2014] [Indexed: 05/11/2023]
Abstract
Root nodulation is a unique developmental process that predominantly occurs in leguminous plants. In this process, signaling initiated by symbiotic bacterial infection alters the fate of differentiated cortical cells and causes formation of new organs. Two qualitatively different regulatory events, namely bacterial infection and nodule organogenesis, need to be coordinated in the epidermis and cortical cells to establish proper nodule formation. Recent studies have determined the tissue-specific requirements of known symbiotic genes and also detailed a direct molecular link between the two regulatory pathways. Additionally, the detailed function of cytokinin signaling has been identified and the downstream genes have been isolated, providing greater understanding of the genetic mechanisms underlying nodule organogenesis.
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Affiliation(s)
- Takuya Suzaki
- National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan; School of Life Science, The Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan.
| | - Masayoshi Kawaguchi
- National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan; School of Life Science, The Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan
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95
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Kapulnik Y, Koltai H. Strigolactone involvement in root development, response to abiotic stress, and interactions with the biotic soil environment. PLANT PHYSIOLOGY 2014; 166:560-9. [PMID: 25037210 PMCID: PMC4213088 DOI: 10.1104/pp.114.244939] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2014] [Accepted: 07/14/2014] [Indexed: 05/02/2023]
Abstract
Strigolactones, recently discovered as plant hormones, regulate the development of different plant parts. In the root, they regulate root architecture and affect root hair length and density. Their biosynthesis and exudation increase under low phosphate levels, and they are associated with root responses to these conditions. Their signaling pathway in the plant includes protein interactions and ubiquitin-dependent repressor degradation. In the root, they lead to changes in actin architecture and dynamics as well as localization of the PIN-FORMED auxin transporter in the plasma membrane. Strigolactones are also involved with communication in the rhizosphere. They are necessary for germination of parasitic plant seeds, they enhance hyphal branching of arbuscular mycorrhizal fungi of the Glomus and Gigaspora spp., and they promote rhizobial symbiosis. This review focuses on the role played by strigolactones in root development, their response to nutrient deficiency, and their involvement with plant interactions in the rhizosphere.
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Affiliation(s)
- Yoram Kapulnik
- Institute of Plant Sciences, Agricultural Research Organization, Volcani Center, Bet Dagan 50250, Israel
| | - Hinanit Koltai
- Institute of Plant Sciences, Agricultural Research Organization, Volcani Center, Bet Dagan 50250, Israel
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96
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Shoot-derived cytokinins systemically regulate root nodulation. Nat Commun 2014; 5:4983. [PMID: 25236855 DOI: 10.1038/ncomms5983] [Citation(s) in RCA: 161] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2014] [Accepted: 08/13/2014] [Indexed: 12/21/2022] Open
Abstract
Legumes establish symbiotic associations with nitrogen-fixing bacteria (rhizobia) in root nodules to obtain nitrogen. Legumes control nodule number through long-distance communication between roots and shoots, maintaining the proper symbiotic balance. Rhizobial infection triggers the production of mobile CLE-RS1/2 peptides in Lotus japonicus roots; the perception of the signal by receptor kinase HAR1 in shoots presumably induces the production of an unidentified shoot-derived inhibitor (SDI) that translocates to roots and blocks further nodule development. Here we show that, CLE-RS1/2-HAR1 signalling activates the production of shoot-derived cytokinins, which have an SDI-like capacity to systemically suppress nodulation. In addition, we show that LjIPT3 is involved in nodulation-related cytokinin production in shoots. The expression of LjIPT3 is activated in an HAR1-dependent manner. We further demonstrate shoot-to-root long-distance transport of cytokinin in L. japonicus seedlings. These findings add essential components to our understanding of how legumes control nodulation to balance nutritional requirements and energy status.
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97
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Etemadi M, Gutjahr C, Couzigou JM, Zouine M, Lauressergues D, Timmers A, Audran C, Bouzayen M, Bécard G, Combier JP. Auxin perception is required for arbuscule development in arbuscular mycorrhizal symbiosis. PLANT PHYSIOLOGY 2014; 166:281-92. [PMID: 25096975 PMCID: PMC4149713 DOI: 10.1104/pp.114.246595] [Citation(s) in RCA: 110] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2014] [Accepted: 08/04/2014] [Indexed: 05/02/2023]
Abstract
Most land plant species live in symbiosis with arbuscular mycorrhizal fungi. These fungi differentiate essential functional structures called arbuscules in root cortical cells from which mineral nutrients are released to the plant. We investigated the role of microRNA393 (miR393), an miRNA that targets several auxin receptors, in arbuscular mycorrhizal root colonization. Expression of the precursors of the miR393 was down-regulated during mycorrhization in three different plant species: Solanum lycopersicum, Medicago truncatula, and Oryza sativa. Treatment of S. lycopersicum, M. truncatula, and O. sativa roots with concentrations of synthetic auxin analogs that did not affect root development stimulated mycorrhization, particularly arbuscule formation. DR5-GUS, a reporter for auxin response, was preferentially expressed in root cells containing arbuscules. Finally, overexpression of miR393 in root tissues resulted in down-regulation of auxin receptor genes (transport inhibitor response1 and auxin-related F box) and underdeveloped arbuscules in all three plant species. These results support the conclusion that miR393 is a negative regulator of arbuscule formation by hampering auxin perception in arbuscule-containing cells.
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Affiliation(s)
- Mohammad Etemadi
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Caroline Gutjahr
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Jean-Malo Couzigou
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Mohamed Zouine
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Dominique Lauressergues
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Antonius Timmers
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Corinne Audran
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Mondher Bouzayen
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Guillaume Bécard
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
| | - Jean-Philippe Combier
- Université Paul Sabatier Toulouse, Unité Mixte de Recherche 5546, Laboratoire de Recherche en Sciences Végétales, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5546, F-31326 Castanet-Tolosan cedex, France (M.E., J.-M.C., D.L., G.B., J.-P.C.);Institut National Polytechnique-Ecole Nationale Supérieure Agronomique Toulouse, Génomique et Biotechnologie des Fruits, F-31326 Castanet-Tolosan, France (M.E., M.Z., C.A., M.B.);Institut National de la Recherche Agronomique, Génomique et Biotechnologie des Fruits, F-52627 Auzeville, France (M.E., M.Z., C.A., M.B.);Faculty of Biology, Genetics, University of Munich, 82152 Martinsried, Germany (C.G.); andLaboratoire des Interactions Plantes-Microorganismes, Unité Mixte de Recherche 441/2594 Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, F-31326 Castanet-Tolosan cedex, France (A.T.)
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98
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Ferguson BJ, Mathesius U. Phytohormone regulation of legume-rhizobia interactions. J Chem Ecol 2014; 40:770-90. [PMID: 25052910 DOI: 10.1007/s10886-014-0472-7] [Citation(s) in RCA: 122] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2014] [Revised: 06/17/2014] [Accepted: 06/23/2014] [Indexed: 12/16/2022]
Abstract
The symbiosis between legumes and nitrogen fixing bacteria called rhizobia leads to the formation of root nodules. Nodules are highly organized root organs that form in response to Nod factors produced by rhizobia, and they provide rhizobia with a specialized niche to optimize nutrient exchange and nitrogen fixation. Nodule development and invasion by rhizobia is locally controlled by feedback between rhizobia and the plant host. In addition, the total number of nodules on a root system is controlled by a systemic mechanism termed 'autoregulation of nodulation'. Both the local and the systemic control of nodulation are regulated by phytohormones. There are two mechanisms by which phytohormone signalling is altered during nodulation: through direct synthesis by rhizobia and through indirect manipulation of the phytohormone balance in the plant, triggered by bacterial Nod factors. Recent genetic and physiological evidence points to a crucial role of Nod factor-induced changes in the host phytohormone balance as a prerequisite for successful nodule formation. Phytohormones synthesized by rhizobia enhance symbiosis effectiveness but do not appear to be necessary for nodule formation. This review provides an overview of recent advances in our understanding of the roles and interactions of phytohormones and signalling peptides in the regulation of nodule infection, initiation, positioning, development, and autoregulation. Future challenges remain to unify hormone-related findings across different legumes and to test whether hormone perception, response, or transport differences among different legumes could explain the variety of nodules types and the predisposition for nodule formation in this plant family. In addition, the molecular studies carried out under controlled conditions will need to be extended into the field to test whether and how phytohormone contributions by host and rhizobial partners affect the long term fitness of the host and the survival and competition of rhizobia in the soil. It also will be interesting to explore the interaction of hormonal signalling pathways between rhizobia and plant pathogens.
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Affiliation(s)
- Brett J Ferguson
- Centre for Integrative Legume Research, School of Agricultural and Food Sciences, The University of Queensland, St. Lucia, Brisbane, Queensland, 4072, Australia
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99
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Yoro E, Suzaki T, Toyokura K, Miyazawa H, Fukaki H, Kawaguchi M. A Positive Regulator of Nodule Organogenesis, NODULE INCEPTION, Acts as a Negative Regulator of Rhizobial Infection in Lotus japonicus. PLANT PHYSIOLOGY 2014; 165:747-758. [PMID: 24722550 PMCID: PMC4043699 DOI: 10.1104/pp.113.233379] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2013] [Accepted: 04/08/2014] [Indexed: 05/20/2023]
Abstract
Legume-rhizobium symbiosis occurs in specialized root organs called nodules. To establish the symbiosis, two major genetically controlled events, rhizobial infection and organogenesis, must occur. For a successful symbiosis, it is essential that the two phenomena proceed simultaneously in different root tissues. Although several symbiotic genes have been identified during genetic screenings of nonsymbiotic mutants, most of the mutants harbor defects in both infection and organogenesis pathways, leading to experimental difficulty in investigating the molecular genetic relationships between the pathways. In this study, we isolated a novel nonnodulation mutant, daphne, in Lotus japonicus that shows complete loss of nodulation but a dramatically increased numbers of infection threads. Characterization of the locus responsible for these phenotypes revealed a chromosomal translocation upstream of NODULE INCEPTION (NIN) in daphne. Genetic analysis using a known nin mutant revealed that daphne is a novel nin mutant allele. Although the daphne mutant showed reduced induction of NIN after rhizobial infection, the spatial expression pattern of NIN in epidermal cells was broader than that in the wild type. Overexpression of NIN strongly suppressed hyperinfection in daphne, and daphne phenotypes were partially rescued by cortical expression of NIN. These observations suggested that the daphne mutation enhanced the role of NIN in the infection pathway due to a specific loss of the role of NIN in nodule organogenesis. Based on these results, we provide evidence that the bifunctional transcription factor NIN negatively regulates infection but positively regulates nodule organogenesis during the course of the symbiosis.
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Affiliation(s)
- Emiko Yoro
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Biology, Graduate School of Science, Kobe University, Kobe 657-8501, Japan (K.T., H.F.); andResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan (H.M.)
| | - Takuya Suzaki
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Biology, Graduate School of Science, Kobe University, Kobe 657-8501, Japan (K.T., H.F.); andResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan (H.M.)
| | - Koichi Toyokura
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Biology, Graduate School of Science, Kobe University, Kobe 657-8501, Japan (K.T., H.F.); andResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan (H.M.)
| | - Hikota Miyazawa
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Biology, Graduate School of Science, Kobe University, Kobe 657-8501, Japan (K.T., H.F.); andResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan (H.M.)
| | - Hidehiro Fukaki
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Biology, Graduate School of Science, Kobe University, Kobe 657-8501, Japan (K.T., H.F.); andResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan (H.M.)
| | - Masayoshi Kawaguchi
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi 444-8585, Japan (E.Y., T.S., M.K.);Department of Biology, Graduate School of Science, Kobe University, Kobe 657-8501, Japan (K.T., H.F.); andResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan (H.M.)
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100
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Suzaki T, Ito M, Yoro E, Sato S, Hirakawa H, Takeda N, Kawaguchi M. Endoreduplication-mediated initiation of symbiotic organ development in Lotus japonicus. Development 2014; 141:2441-5. [PMID: 24850853 DOI: 10.1242/dev.107946] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Many leguminous plants have a unique ability to reset and alter the fate of differentiated root cortical cells to form new organs of nitrogen-fixing root nodules during legume-Rhizobium symbiosis. Recent genetic studies on the role of cytokinin signaling reveal that activation of cytokinin signaling is crucial to the nodule organogenesis process. However, the genetic mechanism underlying the initiation of nodule organogenesis is poorly understood due to the low number of genes that have been identified. Here, we have identified a novel nodulation-deficient mutant named vagrant infection thread 1 (vag1) after suppressor mutant screening of spontaneous nodule formation 2, a cytokinin receptor gain-of-function mutant in Lotus japonicus. The VAG1 gene encodes a protein that is putatively orthologous to Arabidopsis ROOT HAIRLESS 1/HYPOCOTYL 7, a component of the plant DNA topoisomerase VI that is involved in the control of endoreduplication. Nodule phenotype of the vag1 mutant shows that VAG1 is required for the ploidy-dependent cell growth of rhizobial-infected cells. Furthermore, VAG1 mediates the onset of endoreduplication in cortical cells during early nodule development, which may be essential for the initiation of cortical cell proliferation that leads to nodule primordium formation. In addition, cortical infection is severely impaired in the vag1 mutants, whereas the epidermal infection threads formation is normal. This suggests that the VAG1-mediated endoreduplication of cortical cells may be required for the guidance of symbiotic bacteria to host meristematic cells.
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Affiliation(s)
- Takuya Suzaki
- National Institute for Basic Biology, Okazaki 444-8585, Japan School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan
| | - Momoyo Ito
- National Institute for Basic Biology, Okazaki 444-8585, Japan
| | - Emiko Yoro
- National Institute for Basic Biology, Okazaki 444-8585, Japan School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan
| | - Shusei Sato
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan
| | | | - Naoya Takeda
- National Institute for Basic Biology, Okazaki 444-8585, Japan School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan
| | - Masayoshi Kawaguchi
- National Institute for Basic Biology, Okazaki 444-8585, Japan School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan
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