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Anjos L, Estêvão J, Infante C, Mantecón L, Power DM. Extracting protein from microalgae (Tetraselmis chuii) for proteome analysis. MethodsX 2022; 9:101637. [PMID: 35242618 PMCID: PMC8886058 DOI: 10.1016/j.mex.2022.101637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 02/10/2022] [Indexed: 11/26/2022] Open
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52
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Lee WK, Ho CL. Ecological and evolutionary diversification of sulphated polysaccharides in diverse photosynthetic lineages: A review. Carbohydr Polym 2022; 277:118764. [PMID: 34893214 DOI: 10.1016/j.carbpol.2021.118764] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2021] [Revised: 10/05/2021] [Accepted: 10/06/2021] [Indexed: 11/02/2022]
Abstract
Sulphated polysaccharides (SPs) are carbohydrate macromolecules with sulphate esters that are found among marine algae, seagrasses, mangroves and some terrestrial plants. The sulphate concentration in the ocean (28 mM) since ancient time could have driven the production of SPs in marine algae. SPs have a gelatinous property that can protect marine algae against desiccation and salinity stress. Agar and carrageenan are red algal SPs that are widely used as gelling agents in the food and pharmaceutical industries. The information on the SPs from freshwater and land plants are limited. In this review, we reviewed the taxonomic distribution and composition of SPs in different photosynthetic lineages, and explored the association of SP production in these diversified photosynthetic organisms with evolution history and environmental stresses. We also reviewed the genes/proteins involved in SP biosynthesis. Insights into SP biosynthetic machinery may shed light on the evolution that accompanied adaptation to life on earth.
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Affiliation(s)
- Wei-Kang Lee
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, UPM-Serdang, Selangor, Malaysia; Codon Genomics Sdn Bhd, No. 26, Jalan Dutamas 7, Taman Dutamas Balakong, 43200, Seri Kembangan, Selangor, Malaysia.
| | - Chai-Ling Ho
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, UPM-Serdang, Selangor, Malaysia.
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53
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Pfeifer L, Utermöhlen J, Happ K, Permann C, Holzinger A, von Schwartzenberg K, Classen B. Search for evolutionary roots of land plant arabinogalactan-proteins in charophytes: presence of a rhamnogalactan-protein in Spirogyra pratensis (Zygnematophyceae). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 109:568-584. [PMID: 34767672 PMCID: PMC7612518 DOI: 10.1111/tpj.15577] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 11/03/2021] [Accepted: 11/08/2021] [Indexed: 05/31/2023]
Abstract
Charophyte green algae (CGA) are assigned to be the closest relatives of land plants and therefore enlighten processes in the colonization of terrestrial habitats. For the transition from water to land, plants needed significant physiological and structural changes, as well as with regard to cell wall composition. Sequential extraction of cell walls of Nitellopsis obtusa (Charophyceae) and Spirogyra pratensis (Zygnematophyceae) offered a comparative overview on cell wall composition of late branching CGA. Because arabinogalactan-proteins (AGPs) are considered common for all land plant cell walls, we were interested in whether these special glycoproteins are present in CGA. Therefore, we investigated both species with regard to characteristic features of AGPs. In the cell wall of Nitellopsis, no hydroxyproline was present and no AGP was precipitable with the β-glucosyl Yariv's reagent (βGlcY). By contrast, βGlcY precipitation of the water-soluble cell wall fraction of Spirogyra yielded a glycoprotein fraction rich in hydroxyproline, indicating the presence of AGPs. Putative AGPs in the cell walls of non-conjugating Spirogyra filaments, especially in the area of transverse walls, were detected by staining with βGlcY. Labelling increased strongly in generative growth stages, especially during zygospore development. Investigations of the fine structure of the glycan part of βGlcY-precipitated molecules revealed that the galactan backbone resembled that of AGPs with 1,3- 1,6- and 1,3,6-linked Galp moieties. Araf was present only in small amounts and the terminating sugars consisted predominantly of pyranosidic terminal and 1,3-linked rhamnose residues. We introduce the term 'rhamnogalactan-protein' for this special AGP-modification present in S. pratensis.
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Affiliation(s)
- Lukas Pfeifer
- Department of Pharmaceutical Biology, Pharmaceutical Institute, Christian-Albrechts-University of Kiel, Kiel 24118, Germany
| | - Jon Utermöhlen
- Department of Pharmaceutical Biology, Pharmaceutical Institute, Christian-Albrechts-University of Kiel, Kiel 24118, Germany
| | - Kathrin Happ
- Department of Pharmaceutical Biology, Pharmaceutical Institute, Christian-Albrechts-University of Kiel, Kiel 24118, Germany
| | - Charlotte Permann
- Department of Botany, Functional Plant Biology, University of Innsbruck, Innsbruck 6020, Austria
| | - Andreas Holzinger
- Department of Botany, Functional Plant Biology, University of Innsbruck, Innsbruck 6020, Austria
| | | | - Birgit Classen
- Department of Pharmaceutical Biology, Pharmaceutical Institute, Christian-Albrechts-University of Kiel, Kiel 24118, Germany
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54
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Samarathunga J, Wijesekara I, Jayasinghe M. Seaweed proteins as a novel protein alternative: Types, extractions, and functional food applications. FOOD REVIEWS INTERNATIONAL 2022. [DOI: 10.1080/87559129.2021.2023564] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Affiliation(s)
- Jayani Samarathunga
- Department of Food Science & Technology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, Sri Lanka
| | - Isuru Wijesekara
- Department of Food Science & Technology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, Sri Lanka
| | - Madhura Jayasinghe
- Department of Food Science & Technology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, Sri Lanka
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55
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56
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Ghassemi N, Poulhazan A, Deligey F, Mentink-Vigier F, Marcotte I, Wang T. Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants. Chem Rev 2021; 122:10036-10086. [PMID: 34878762 DOI: 10.1021/acs.chemrev.1c00669] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Extracellular matrixes (ECMs), such as the cell walls and biofilms, are important for supporting cell integrity and function and regulating intercellular communication. These biomaterials are also of significant interest to the production of biofuels and the development of antimicrobial treatment. Solid-state nuclear magnetic resonance (ssNMR) and magic-angle spinning-dynamic nuclear polarization (MAS-DNP) are uniquely powerful for understanding the conformational structure, dynamical characteristics, and supramolecular assemblies of carbohydrates and other biomolecules in ECMs. This review highlights the recent high-resolution investigations of intact ECMs and native cells in many organisms spanning across plants, bacteria, fungi, and algae. We spotlight the structural principles identified in ECMs, discuss the current technical limitation and underexplored biochemical topics, and point out the promising opportunities enabled by the recent advances of the rapidly evolving ssNMR technology.
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Affiliation(s)
- Nader Ghassemi
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Alexandre Poulhazan
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States.,Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Fabien Deligey
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | | | - Isabelle Marcotte
- Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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57
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Nutrients and Energy Digestibility of Microalgal Biomass for Fish Feed Applications. SUSTAINABILITY 2021. [DOI: 10.3390/su132313211] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Aquafeed accounts for at least 75–90% of aquaculture’s operating costs. Traditional aquafeed ingredients such as fishmeal, fish oil, and soybean meal are unsustainable; further, their increasing cost necessities developing alternative feed ingredients. Microalgae-based aquafeed is not only environmentally friendly, but it can also be cost-effective with proper optimization. In addition, the nutrition profile of microalgae is similar to that of many fishes. The digestibility of a feed is one of the most important factors to consider in feed formulation. A highly digestible feed can lower production costs, reduce feed waste, and reduce the risk of eutrophication. This review discusses the digestibility of various nutrients such as protein, lipid, carbohydrate, amino acids, and fatty acids (including omega-3 fatty acids), dry matter, and energy of various microalgae in fish. Other commonly used aquafeed ingredients were also compared to microalgae in terms of nutrient and energy digestibility in fish. The intrinsic characteristics of microalgae, biomass pretreatment, and feed preparation methods are all discussed as factors that contribute to the nutrient and energy digestibility of microalgae in fish. Furthermore, methods for increasing the digestibility of microalgal biomass in fish are suggested. Finally, the review concludes with the challenges and prospects of using microalgae as a fish feed in terms of digestibility.
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58
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Poulhazan A, Dickwella Widanage MC, Muszyński A, Arnold AA, Warschawski DE, Azadi P, Marcotte I, Wang T. Identification and Quantification of Glycans in Whole Cells: Architecture of Microalgal Polysaccharides Described by Solid-State Nuclear Magnetic Resonance. J Am Chem Soc 2021; 143:19374-19388. [PMID: 34735142 PMCID: PMC8630702 DOI: 10.1021/jacs.1c07429] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Indexed: 12/15/2022]
Abstract
Microalgae are photosynthetic organisms widely distributed in nature and serve as a sustainable source of bioproducts. Their carbohydrate components are also promising candidates for bioenergy production and bioremediation, but the structural characterization of these heterogeneous polymers in cells remains a formidable problem. Here we present a widely applicable protocol for identifying and quantifying the glycan content using magic-angle-spinning (MAS) solid-state NMR (ssNMR) spectroscopy, with validation from glycosyl linkage and composition analysis deduced from mass-spectrometry (MS). Two-dimensional 13C-13C correlation ssNMR spectra of a uniformly 13C-labeled green microalga Parachlorella beijerinckii reveal that starch is the most abundant polysaccharide in a naturally cellulose-deficient strain, and this polymer adopts a well-organized and highly rigid structure in the cell. Some xyloses are present in both the mobile and rigid domains of the cell wall, with their chemical shifts partially aligned with the flat-ribbon 2-fold xylan identified in plants. Surprisingly, most other carbohydrates are largely mobile, regardless of their distribution in glycolipids or cell walls. These structural insights correlate with the high digestibility of this cellulose-deficient strain, and the in-cell ssNMR methods will facilitate the investigations of other economically important algae species.
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Affiliation(s)
- Alexandre Poulhazan
- Department
of Chemistry, University of Quebec at Montreal, Montreal H2X 2J6, Canada
| | | | - Artur Muszyński
- Complex
Carbohydrate Research Center, University
of Georgia, Athens, Georgia 30602, United States
| | - Alexandre A. Arnold
- Department
of Chemistry, University of Quebec at Montreal, Montreal H2X 2J6, Canada
| | - Dror E. Warschawski
- Laboratoire
des Biomolécules, LBM, CNRS UMR 7203,
Sorbonne Université, École Normale Supérieure,
PSL University, 75005 Paris, France
| | - Parastoo Azadi
- Complex
Carbohydrate Research Center, University
of Georgia, Athens, Georgia 30602, United States
| | - Isabelle Marcotte
- Department
of Chemistry, University of Quebec at Montreal, Montreal H2X 2J6, Canada
| | - Tuo Wang
- Department
of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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59
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Chae Y, Kim L, Lee J, Kim D, Cui R, An YJ. Estimation of hazardous concentration of toluene in the terrestrial ecosystem through the species sensitivity distribution approach. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 289:117836. [PMID: 34340185 DOI: 10.1016/j.envpol.2021.117836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Revised: 06/10/2021] [Accepted: 07/21/2021] [Indexed: 06/13/2023]
Abstract
Toluene is a highly flammable and commonly used industrial chemical with severe health consequences on humans upon exposure and ingestion. In this study, multispecies bioassays were conducted using a species sensitivity distribution approach to determine acute and chronic hazardous concentrations of toluene in soil. Acute and chronic toluene toxicity tests were conducted with seven soil species from four taxonomic groups. The results from the toxicity tests were used to estimate the acute and chronic HC5 (hazardous concentration for 5 % of species) of toluene in the terrestrial environment at 58.9 (5.4-639.6) mg kg-1 and 2.2 (0.2-19.8) mg kg-1, respectively. To the best of our knowledge, this is the first study to estimate the hazardous concentration of toluene in soil by conducting a battery of bioassays. These values can be used as references for the environmental risk assessment of chemical accidents involving toluene and estimating its impact on soil to protect the terrestrial environment.
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Affiliation(s)
- Yooeun Chae
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Lia Kim
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Jieun Lee
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Dokyung Kim
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Rongxue Cui
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Youn-Joo An
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea.
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60
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Morphological and spectroscopic analysis of snow and glacier algae and their parasitic fungi on different glaciers of Svalbard. Sci Rep 2021; 11:21785. [PMID: 34750421 PMCID: PMC8575968 DOI: 10.1038/s41598-021-01211-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 10/22/2021] [Indexed: 11/08/2022] Open
Abstract
The results show the morphological analyses and spectroscopic studies of snow and glacier algae and their parasitic fungi in Svalbard (High Arctic). Fixed algal cells of two species, Sanguina nivaloides and Ancylonema nordenskioeldii, were imaged using light microscopy, scanning electron microscopy (SEM), and atomic force microscopy (AFM). Fluorescence microscopy using Calcofluor white stain supported the observations of parasitic fungi on the algal cells. Images in brightfield microscopy showed chytrid-like fungi penetrating the cells of both algal species. Parasites were found to colonize the cells of A. nordenskioeldii and hypnozygotes of S. nivaloides, while no fungi infected the cyst stages of S. nivaloides. The autofluorescence analysis revealed the ability of S. nivaloides to glow when excited with different wavelengths, while A. nordenskioeldii did not fluoresce. The hypnozygotes of S. nivaloides emitted brighter fluorescence than the cysts, and the most intense luminosity was observed in the UV range. The Fourier-transform infrared spectroscopy (FTIR) and energy-dispersive X-ray spectroscopy (EDS) spectroscopic analysis showed differences in the chemical composition between samples collected from three different sites. Samples dominated by cyst cells were characterized by the presence of an abundant polysaccharide envelope.
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61
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Filová A, Fargašová A, Molnárová M. Cu, Ni, and Zn effects on basic physiological and stress parameters of Raphidocelis subcapitata algae. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:58426-58441. [PMID: 34115300 DOI: 10.1007/s11356-021-14778-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 06/02/2021] [Indexed: 06/12/2023]
Abstract
The submitted work observed Cu, Ni, and Zn effects on selected physiological and stress parameters of the alga Raphidocelis (Pseudokirchneriella) subcapitata. In 96-h experiments, EC50 values for algal specific growth rates (SGR) inhibition in Cu, Ni, and Zn presence were estimated as 0.15, 0.50, and 0.20 mg l-1. In addition to growth inhibition, the effect of metals at various concentrations on algal SGR was also monitored. While these experiments confirmed approximately the same toxicity of Zn and Cu on SGR, Ni toxicity on this parameter was observed as the lowest. In terms of the effect of metals on the level of selected photosynthetic pigments, chlorophyll a, chlorophyll b, and carotenoids, the following inhibition orders can be established: Zn > Cu > Ni, Ni > Cu > Zn, and Ni > Cu ≥ Zn, respectively. As a novelty of our research, we included monitoring and evaluation of the intensity of stress, which was the response of algal cells to the presence of Cu, Ni, and Zn, and its correlation with respect to production factors and metal accumulation in algal cells. As stress factors, thiol (-SH) group and TBARS (thiobarbituric acid reactive substances) as significant indicators of lipid level peroxidation were determined. The content of -SH groups depended on the concentration of metal, and its level was the most stimulated by Zn, less by Cu and Ni. The TBARS content was 2 to 5 times higher in Cu than in Zn or Ni presence. In the presence of Zn and Ni, TBARS content reached approximately the same levels. For this parameter, the following rank order can be arranged: Cu >> Ni ≥ Zn. While Cu and Ni accumulation in R. subcapitata was confirmed, Zn accumulation was not determined or was below the detectable limit. Regression analyses revealed significant positive correlation between Cu accumulation and TBARS while carotenoids as possible antioxidants confirmed with TBARS mostly negative correlations.
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Affiliation(s)
- Alexandra Filová
- Department of Environmental Ecology, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 842 15, Bratislava, Slovak Republic
| | - Agáta Fargašová
- Department of Environmental Ecology, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 842 15, Bratislava, Slovak Republic
| | - Marianna Molnárová
- Department of Environmental Ecology, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 842 15, Bratislava, Slovak Republic.
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62
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Abidi W, Torres-Sánchez L, Siroy A, Krasteva PV. Weaving of bacterial cellulose by the Bcs secretion systems. FEMS Microbiol Rev 2021; 46:6388354. [PMID: 34634120 PMCID: PMC8892547 DOI: 10.1093/femsre/fuab051] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 10/08/2021] [Indexed: 12/13/2022] Open
Abstract
Cellulose is the most abundant biological compound on Earth and while it is the predominant building constituent of plants, it is also a key extracellular matrix component in many diverse bacterial species. While bacterial cellulose was first described in the 19th century, it was not until this last decade that a string of structural works provided insights into how the cellulose synthase BcsA, assisted by its inner-membrane partner BcsB, senses c-di-GMP to simultaneously polymerize its substrate and extrude the nascent polysaccharide across the inner bacterial membrane. It is now established that bacterial cellulose can be produced by several distinct types of cellulose secretion systems and that in addition to BcsAB, they can feature multiple accessory subunits, often indispensable for polysaccharide production. Importantly, the last years mark significant progress in our understanding not only of cellulose polymerization per se but also of the bigger picture of bacterial signaling, secretion system assembly, biofilm formation and host tissue colonization, as well as of structural and functional parallels of this dominant biosynthetic process between the bacterial and eukaryotic domains of life. Here, we review current mechanistic knowledge on bacterial cellulose secretion with focus on the structure, assembly and cooperativity of Bcs secretion system components.
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Affiliation(s)
- Wiem Abidi
- 'Structural Biology of Biofilms' group, European Institute of Chemistry and Biology (IECB), F-33600 Pessac, France.,Université de Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, F-33600 Pessac, France.,École doctorale 'Innovation thérapeutique: du fundamental à l'appliqué' (ITFA), Université Paris-Saclay, 92296, Chatenay-Malabry, France
| | - Lucía Torres-Sánchez
- 'Structural Biology of Biofilms' group, European Institute of Chemistry and Biology (IECB), F-33600 Pessac, France.,Université de Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, F-33600 Pessac, France.,École doctorale 'Innovation thérapeutique: du fundamental à l'appliqué' (ITFA), Université Paris-Saclay, 92296, Chatenay-Malabry, France
| | - Axel Siroy
- 'Structural Biology of Biofilms' group, European Institute of Chemistry and Biology (IECB), F-33600 Pessac, France.,Université de Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, F-33600 Pessac, France
| | - Petya Violinova Krasteva
- 'Structural Biology of Biofilms' group, European Institute of Chemistry and Biology (IECB), F-33600 Pessac, France.,Université de Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, F-33600 Pessac, France
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63
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Franková L, Fry SC. Hemicellulose-remodelling transglycanase activities from charophytes: towards the evolution of the land-plant cell wall. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 108:7-28. [PMID: 34547150 DOI: 10.1111/tpj.15500] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 08/16/2021] [Accepted: 08/17/2021] [Indexed: 06/13/2023]
Abstract
Transglycanases remodel cell-wall polymers, having a critical impact on many physiological processes. Unlike xyloglucan endotransglucosylase (XET) activity, widely studied in land plants, very little is known about charophyte wall-modifying enzymes - information that would promote our understanding of the 'primordial' wall, revealing how the wall matrix is remodelled in the closest living algal relatives of land plants, and what changed during terrestrialisation. We conducted various in-vitro assays for wall-remodelling transglycosylases, monitoring either (a) polysaccharide-to-[3 H]oligosaccharide transglycosylation or (b) non-radioactive oligosaccharide-to-oligosaccharide transglycosylation. We screened a wide collection of enzyme extracts from charophytes (and early-diverging land plants for comparison) and discovered several homo- and hetero-transglycanase activities. In contrast to most land plants, charophytes possess high trans-β-1,4-mannanase activity, suggesting that land plants' algal ancestors prioritised mannan remodelling. Trans-β-1,4-xylanase activity was also found, most abundantly in Chara, Nitella and Klebsormidium. Exo-acting transglycosidase activities (trans-β-1,4-xylosidase and trans-β-1,4-mannosidase) were also detected. In addition, charophytes exhibited homo- and hetero-trans-β-glucanase activities (XET, mixed-linkage glucan [MLG]:xyloglucan endotransglucosylase and cellulose:xyloglucan endotransglucosylase) despite the paucity or lack of land-plant-like xyloglucan and MLG as potential donor substrates in their cell walls. However, trans-α-xylosidase activity (which remodels xyloglucan in angiosperms) was absent in charophytes and early-diverging land plants. Transglycanase action was also found in situ, acting on endogenous algal polysaccharides as donor substrates and fluorescent xyloglucan oligosaccharides as acceptor substrates. We conclude that trans-β-mannanase and trans-β-xylanase activities are present and thus may play key roles in charophyte walls (most of which possess little or no xyloglucan and MLG, but often contain abundant β-mannans and β-xylans), comparable to the roles of XET in xyloglucan-rich land plants.
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Affiliation(s)
- Lenka Franková
- The Edinburgh Cell Wall Group, Institute of Molecular Plant Sciences, The University of Edinburgh, Edinburgh, EH9 3BF, UK
| | - Stephen C Fry
- The Edinburgh Cell Wall Group, Institute of Molecular Plant Sciences, The University of Edinburgh, Edinburgh, EH9 3BF, UK
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64
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Vannoni M, Créach V, Lozach S, Barry J, Sheahan D. Chlorination in power station cooling water systems: Effect on biomass, abundance and physiology of natural phytoplankton communities. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2021; 239:105954. [PMID: 34509925 DOI: 10.1016/j.aquatox.2021.105954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 07/05/2021] [Accepted: 08/23/2021] [Indexed: 06/13/2023]
Abstract
Chlorination is a widely used method to prevent biofouling in power station cooling water systems in coastal and estuarine environments. This study evaluated the impact of chlorination together with temperature increase to simulate primary entrainment of a phytoplankton community. Biomass, diversity, and photosynthetic activity were monitored over 72 hours to establish impacts on the phytoplankton community. Biomass was significantly reduced after treatment. The mean cell size of the population significantly increased immediately after treatment highlighting an impact on the smaller cell size species of the community (picophytoplankton). Changes in accessory pigments composition suggest an effect on groups such as Prasinophyceae, Cyanobacteria and Chlorophycea. Species composition, dominated by diatoms, was also affected with Skeletonema marinoi and Asterionellopsis glacialis amongst the most sensitive species. Photosynthetic activity was affected in the short term but recovered after 48 hours. This study shows that by using a combination of measurements (e.g biomass, diversity, and physiology) the effects of entrainment in power station cooling water systems, that may be of longer-term significance for specific functional groups of phytoplankton communities, can be discerned. These changes would not necessarily be seen using individual techniques alone such as cell number counts or biomass assessment which may indicate apparent community recovery.
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Affiliation(s)
- Marta Vannoni
- CEFAS, Pakefield Road, Lowestoft NR33 0HT, Suffolk, UK.
| | | | - Sophie Lozach
- CEFAS, Pakefield Road, Lowestoft NR33 0HT, Suffolk, UK
| | - Jon Barry
- CEFAS, Pakefield Road, Lowestoft NR33 0HT, Suffolk, UK
| | - Dave Sheahan
- CEFAS, Pakefield Road, Lowestoft NR33 0HT, Suffolk, UK
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65
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Less Polar Compounds and Targeted Antioxidant Potential (In Vitro and In Vivo) of Codium adhaerens C. Agardh 1822. Pharmaceuticals (Basel) 2021; 14:ph14090944. [PMID: 34577644 PMCID: PMC8470845 DOI: 10.3390/ph14090944] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 09/17/2021] [Accepted: 09/18/2021] [Indexed: 12/14/2022] Open
Abstract
Codium adhaerens from the Adriatic Sea (Croatia) was comprehensively investigated regarding less polar compounds for the first time. Although there are several phytochemical studies on C. adhaerens from other regions, this is the first report on volatile organic compounds (VOCs) from fresh (FrCa) and air-dried (DrCa) samples. The novelty is also related to its targeted antioxidant potential in vitro and in vivo. The main aims were to: (a) identify and compare VOCs of FrCa and DrCa obtained by headspace solid-phase microextraction (HS-SPME) and hydrodistillation (HD); (b) determine fatty acid (FA) composition of freeze-dried sample (FdCa); (c) determine the composition of less polar fractions of FdCa by high-performance liquid chromatography-high-resolution mass spectrometry with electrospray ionisation (UHPLC-ESI-HRMS); and (d) comprehensively evaluate the antioxidant activity of the fractions by four in vitro assays and in vivo zebrafish model (including embryotoxicity). Significant changes of VOCs were found after air drying. ω6 FAs were present in higher content than ω3 FAs indicating C. adhaerens as a good source of dietary polyunsaturated FAs. The results obtained in vivo correlate well with in vitro methods and both fractions exerted similar antioxidative responses which is in agreement with the high abundance of present biomolecules with known antioxidant properties (e.g., fucoxanthin, pheophytin a, and pheophorbide a). These results suggest that C. adhaerens might be a potent source of natural antioxidants that could be further used in the research of oxidative stress-related diseases.
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Baghel RS, Reddy CRK, Singh RP. Seaweed-based cellulose: Applications, and future perspectives. Carbohydr Polym 2021; 267:118241. [PMID: 34119188 DOI: 10.1016/j.carbpol.2021.118241] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 05/03/2021] [Accepted: 05/17/2021] [Indexed: 12/15/2022]
Abstract
Cellulose is a naturally occurring organic polymer extracted mainly from lignocellulosic biomass of terrestrial origin. However, the increasing production of seaweeds for growing global market demands has developed the opportunity to use it as an additional cellulose source. This review aims to prepare comprehensive information to understand seaweed cellulose and its possible applications better. This is the first review that summarizes and discusses the cellulose from all three types (green, red, and brown) of seaweeds in various aspects such as contents, extraction strategies, and cellulose-based products. The seaweed cellulose applications and future perspectives are also discussed. Several seaweed species were found to have significant cellulose content (9-34% dry weight). The review highlights that the properties of seaweed cellulose-based products were comparable to products prepared from plant-based cellulose. Overall, this work demonstrates that cellulose could be economically extracted from phycocolloids industrial waste and selected cellulose-rich seaweed species for various commercial applications.
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Affiliation(s)
- Ravi S Baghel
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa 403004, India.
| | - C R K Reddy
- Indian Centre for Climate and Societal Impact Research, Vivekanand Research and Training Institute, Mandvi-Katch, Gujarat 370465, India
| | - Ravindra Pal Singh
- Food and Nutritional Biotechnology Division, National Agri-Food Biotechnology Institute (NABI), SAS Nagar, Punjab 140306, India
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Permann C, Herburger K, Felhofer M, Gierlinger N, Lewis LA, Holzinger A. Induction of Conjugation and Zygospore Cell Wall Characteristics in the Alpine Spirogyra mirabilis (Zygnematophyceae, Charophyta): Advantage under Climate Change Scenarios? PLANTS (BASEL, SWITZERLAND) 2021; 10:1740. [PMID: 34451785 PMCID: PMC8402014 DOI: 10.3390/plants10081740] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 08/13/2021] [Accepted: 08/18/2021] [Indexed: 11/26/2022]
Abstract
Extreme environments, such as alpine habitats at high elevation, are increasingly exposed to man-made climate change. Zygnematophyceae thriving in these regions possess a special means of sexual reproduction, termed conjugation, leading to the formation of resistant zygospores. A field sample of Spirogyra with numerous conjugating stages was isolated and characterized by molecular phylogeny. We successfully induced sexual reproduction under laboratory conditions by a transfer to artificial pond water and increasing the light intensity to 184 µmol photons m-2 s-1. This, however was only possible in early spring, suggesting that the isolated cultures had an internal rhythm. The reproductive morphology was characterized by light- and transmission electron microscopy, and the latter allowed the detection of distinctly oriented microfibrils in the exo- and endospore, and an electron-dense mesospore. Glycan microarray profiling showed that Spirogyra cell walls are rich in major pectic and hemicellulosic polysaccharides, and immuno-fluorescence allowed the detection of arabinogalactan proteins (AGPs) and xyloglucan in the zygospore cell walls. Confocal RAMAN spectroscopy detected complex aromatic compounds, similar in their spectral signature to that of Lycopodium spores. These data support the idea that sexual reproduction in Zygnematophyceae, the sister lineage to land plants, might have played an important role in the process of terrestrialization.
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Affiliation(s)
- Charlotte Permann
- Department of Botany, Functional Plant Biology, University of Innsbruck, 6020 Innsbruck, Austria;
| | - Klaus Herburger
- Section for Plant Glycobiology, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg, Denmark;
| | - Martin Felhofer
- Department of Nanobiotechnology, University of Natural Resources and Life Sciences Vienna (BOKU), 1190 Vienna, Austria; (M.F.); (N.G.)
| | - Notburga Gierlinger
- Department of Nanobiotechnology, University of Natural Resources and Life Sciences Vienna (BOKU), 1190 Vienna, Austria; (M.F.); (N.G.)
| | - Louise A. Lewis
- Department of Ecology and Evolutionary Biology, University of Conneticut, Storrs, CT 06269-3043, USA;
| | - Andreas Holzinger
- Department of Botany, Functional Plant Biology, University of Innsbruck, 6020 Innsbruck, Austria;
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Abstract
Although the strategies used by bacteria to adapt to specific environmental conditions are widely reported, fewer studies have addressed how microbes with a cosmopolitan distribution can survive in diverse ecosystems. Exiguobacterium is a versatile genus whose members are commonly found in various habitats. To better understand the mechanisms underlying the universality of Exiguobacterium, we collected 105 strains from diverse environments and performed large-scale metabolic and adaptive ability tests. We found that most Exiguobacterium members have the capacity to survive under wide ranges of temperature, salinity, and pH. According to phylogenetic and average nucleotide identity analyses, we identified 27 putative species and classified two genetic groups: groups I and II. Comparative genomic analysis revealed that the Exiguobacterium members utilize a variety of complex polysaccharides and proteins to support survival in diverse environments and also employ a number of chaperonins and transporters for this purpose. We observed that the group I species can be found in more diverse terrestrial environments and have a larger genome size than the group II species. Our analyses revealed that the expansion of transporter families drove genomic expansion in group I strains, and we identified 25 transporter families, many of which are involved in the transport of important substrates and resistance to environmental stresses and are enriched in group I strains. This study provides important insights into both the overall general genetic basis for the cosmopolitan distribution of a bacterial genus and the evolutionary and adaptive strategies of Exiguobacterium. IMPORTANCE The wide distribution characteristics of Exiguobacterium make it a valuable model for studying the adaptive strategies of bacteria that can survive in multiple habitats. In this study, we reveal that members of the Exiguobacterium genus have a cosmopolitan distribution and share an extensive adaptability that enables them to survive in various environments. The capacities shared by Exiguobacterium members, such as their diverse means of polysaccharide utilization and environmental-stress resistance, provide an important basis for their cosmopolitan distribution. Furthermore, the selective expansion of transporter families has been a main driving force for genomic evolution in Exiguobacterium. Our findings improve our understanding of the adaptive and evolutionary mechanisms of cosmopolitan bacteria and the vital genomic traits that can facilitate niche adaptation.
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Zanchetta E, Damergi E, Patel B, Borgmeyer T, Pick H, Pulgarin A, Ludwig C. Algal cellulose, production and potential use in plastics: Challenges and opportunities. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102288] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Lu L, Niu X, Zhang D, Ma J, Zheng X, Xiao H, Huang X, Lin Z, Hu H. The algicidal efficacy and the mechanism of Enterobacter sp. EA-1 on Oscillatoria dominating in aquaculture system. ENVIRONMENTAL RESEARCH 2021; 197:111105. [PMID: 33839120 DOI: 10.1016/j.envres.2021.111105] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 03/20/2021] [Accepted: 03/29/2021] [Indexed: 06/12/2023]
Abstract
The global escalation and intensification of cyanobacterial blooms require powerful algaecides. This study investigated the algicidal efficacy and mechanism of EA-1 against Oscillatoria. Bacteria EA-1, identified as Enterobacter, was isolated with high algicidal activity against harmful cyanobacteria. Results showed that a complete removal of Oscillatoria was observed within 3 days with the initial Chl-a concentration of 1.74 mg/L. Physiological responses of Oscillatoria revealed that EA-1 induced severe lipid peroxidation and the ultimate decline of antioxidant enzyme activities. Moreover, the contents for both intracellular protein and carbohydrate of each algae cell increased first and then decreased. Scanning electron microscope (SEM) and transmission electron microscopy (TEM) analysis clarified that the possible process of Oscillatoria lysis included the breach of cross wall, followed by the disruption of photosynthetic membrane and incipient nucleus, and the ultimate outflow of inclusion. Confocal laser scanning microscopy (CLSM) analysis illustrated the degradation process of incipient nucleus in Oscillatoria.
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Affiliation(s)
- Lu Lu
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, PR China
| | - Xiaojun Niu
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, PR China; Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, College of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, 525000, PR China; Guangdong Provincial Key Laboratory of Atmospheric Environment and Pollution Control, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou, 510006, PR China; The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou, 510006, PR China.
| | - Dongqing Zhang
- Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, College of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, 525000, PR China.
| | - Jinling Ma
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, PR China
| | - Xiaoxian Zheng
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, PR China
| | - Huaping Xiao
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, PR China
| | - Xuyin Huang
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, PR China
| | - Zhang Lin
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, PR China
| | - Huijian Hu
- Institute of Zoology, Guangdong Academy of Sciences, PR China
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Cell Wall Polysaccharides. POLYSACCHARIDES 2021. [DOI: 10.1002/9781119711414.ch2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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Přerovská T, Henke S, Bleha R, Spiwok V, Gillarová S, Yvin JC, Ferrières V, Nguema-Ona E, Lipovová P. Arabinogalactan-like Glycoproteins from Ulva lactuca (Chlorophyta) Show Unique Features Compared to Land Plants AGPs. JOURNAL OF PHYCOLOGY 2021; 57:619-635. [PMID: 33338254 DOI: 10.1111/jpy.13121] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 10/27/2020] [Accepted: 10/30/2020] [Indexed: 05/21/2023]
Abstract
Arabinogalactan proteins (AGPs) encompass a diverse group of plant cell wall proteoglycans, which play an essential role in plant development, signaling, plant-microbe interactions, and many others. Although they are widely distributed throughout the plant kingdom and extensively studied, they remain largely unexplored in the lower plants, especially in seaweeds. Ulva species have high economic potential since various applications were previously described including bioremediation, biofuel production, and as a source of bioactive compounds. This article presents the first experimental confirmation of AGP-like glycoproteins in Ulva species and provides a simple extraction protocol of Ulva lactuca AGP-like glycoproteins, their partial characterization and unique comparison to scarcely described Solanum lycopersicum AGPs. The reactivity with primary anti-AGP antibodies as well as Yariv reagent showed a great variety between Ulva lactuca and Solanum lycopersicum AGP-like glycoproteins. While the amino acid analysis of the AGP-like glycoproteins purified by the β-d-glucosyl Yariv reagent showed a similarity between algal and land plant AGP-like glycoproteins, neutral saccharide analysis revealed unique glycosylation of the Ulva lactuca AGP-like glycoproteins. Surprisingly, arabinose and galactose were not the most prevalent monosaccharides and the most outstanding was the presence of 3-O-methyl-hexose, which has never been described in the AGPs. The exceptional structure of the Ulva lactuca AGP-like glycoproteins implies a specialized adaptation to the marine environment and might bring new insight into the evolution of the plant cell wall.
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Affiliation(s)
- Tereza Přerovská
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR 6226, Univ Rennes, 35000, Rennes, France
| | - Svatopluk Henke
- Department of Carbohydrates and Cerials, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Roman Bleha
- Department of Carbohydrates and Cerials, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Vojtěch Spiwok
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Simona Gillarová
- Department of Carbohydrates and Cerials, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
| | - Jean-Claude Yvin
- Centre Mondial de l'Innovation Roullier, Laboratoire de Nutrition Végétal, 18 Avenue Franklin Roosevelt, Saint-Malo, 35400, France
| | - Vincent Ferrières
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR 6226, Univ Rennes, 35000, Rennes, France
| | - Eric Nguema-Ona
- Centre Mondial de l'Innovation Roullier, Laboratoire de Nutrition Végétal, 18 Avenue Franklin Roosevelt, Saint-Malo, 35400, France
| | - Petra Lipovová
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, Prague, 16625, Czech Republic
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Mosey M, Douchi D, Knoshaug EP, Laurens LM. Methodological review of genetic engineering approaches for non-model algae. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102221] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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74
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Mikula P, Mlnaříková M, Nadres ET, Takahashi H, Babica P, Kuroda K, Bláha L, Sovadinová I. Synthetic Biomimetic Polymethacrylates: Promising Platform for the Design of Anti-Cyanobacterial and Anti-Algal Agents. Polymers (Basel) 2021; 13:polym13071025. [PMID: 33810255 PMCID: PMC8036423 DOI: 10.3390/polym13071025] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 03/20/2021] [Accepted: 03/23/2021] [Indexed: 01/26/2023] Open
Abstract
Extensive, uncontrolled growth of algae and cyanobacteria is an environmental, public health, economic, and technical issue in managing natural and engineered water systems. Synthetic biomimetic polymers have been almost exclusively considered antimicrobial alternatives to conventional antibiotics to treat human bacterial infections. Very little is known about their applicability in an aquatic environment. Here, we introduce synthetic biomimetic polymethacrylates (SBPs) as a cost-effective and chemically facile, flexible platform for designing a new type of agent suitable for controlling and mitigating photosynthetic microorganisms. Since SBPs are cationic and membranolytic in heterotrophic bacteria, we hypothesized they could also interact with negatively charged cyanobacterial or algal cell walls and membranes. We demonstrated that SBPs inhibited the growth of aquatic photosynthetic organisms of concern, i.e., cyanobacteria (Microcystis aeruginosa and Synechococcus elongatus) and green algae (Chlamydomonas reinhardtii and Desmodesmus quadricauda), with 50% effective growth-inhibiting concentrations ranging between 95 nM and 6.5 μM. Additionally, SBPs exhibited algicidal effects on C. reinhardtii and cyanocidal effects on picocyanobacterium S. elongatus and microcystin-producing cyanobacterium M. aeruginosa. SBP copolymers, particularly those with moderate hydrophobic content, induced more potent cyanostatic and cyanocidal effects than homopolymers. Thus, biomimetic polymers are a promising platform for the design of anti-cyanobacterial and anti-algal agents for water treatment.
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Affiliation(s)
- Přemysl Mikula
- RECETOX, Faculty of Science, Masaryk University, Kamenice 3, CZ-62500 Brno, Czech Republic; (P.M.); (M.M.); (P.B.); (L.B.)
| | - Marie Mlnaříková
- RECETOX, Faculty of Science, Masaryk University, Kamenice 3, CZ-62500 Brno, Czech Republic; (P.M.); (M.M.); (P.B.); (L.B.)
| | - Enrico T. Nadres
- Department of Biologic and Materials Sciences & Prosthodontics, School of Dentistry, University of Michigan, Ann Arbor, MI 48109, USA; (E.T.N.); (H.T.); (K.K.)
| | - Haruko Takahashi
- Department of Biologic and Materials Sciences & Prosthodontics, School of Dentistry, University of Michigan, Ann Arbor, MI 48109, USA; (E.T.N.); (H.T.); (K.K.)
| | - Pavel Babica
- RECETOX, Faculty of Science, Masaryk University, Kamenice 3, CZ-62500 Brno, Czech Republic; (P.M.); (M.M.); (P.B.); (L.B.)
- Department of Experimental Phycology and Ecotoxicology, Institute of Botany of the CAS, CZ-60200 Brno, Czech Republic
| | - Kenichi Kuroda
- Department of Biologic and Materials Sciences & Prosthodontics, School of Dentistry, University of Michigan, Ann Arbor, MI 48109, USA; (E.T.N.); (H.T.); (K.K.)
| | - Luděk Bláha
- RECETOX, Faculty of Science, Masaryk University, Kamenice 3, CZ-62500 Brno, Czech Republic; (P.M.); (M.M.); (P.B.); (L.B.)
| | - Iva Sovadinová
- RECETOX, Faculty of Science, Masaryk University, Kamenice 3, CZ-62500 Brno, Czech Republic; (P.M.); (M.M.); (P.B.); (L.B.)
- Correspondence: ; Tel.: +420-549-494-738
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Lloyd C, Tan KH, Lim KL, Valu VG, Fun SMY, Chye TR, Mak HM, Sim WX, Musa SL, Ng JJQ, Bte Nordin NS, Bte Md Aidzil N, Eng ZYW, Manickavasagam P, New JY. Identification of microalgae cultured in Bold's Basal medium from freshwater samples, from a high-rise city. Sci Rep 2021; 11:4474. [PMID: 33627771 PMCID: PMC7904821 DOI: 10.1038/s41598-021-84112-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 02/12/2021] [Indexed: 11/30/2022] Open
Abstract
This study aimed at exploring microalgal heterogeneity from fresh water samples collected from inland water bodies in the heavily built city of Singapore. Culturable pure isolates (n = 94) were subject to an in-house microalgal DNA extraction method and LSU rDNA sequencing. Isolates were analysed for their predominance and distribution. A total of 17 different algal genera were identified (H = 2.8, EH = 0.6), of which Scenedesmus spp. and Chlorella spp. constituted 27.5% and 21.3% of isolates respectively, followed by Micractinium spp. (18.8%) and Chlamydomonas spp. (12.5%). We also report 16 new microalgal strains from this region. The data is important from an ecological and biotechnological perspective.
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Affiliation(s)
- Charmaine Lloyd
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore. .,School of Health and Medical Sciences, Swinburne University of Technology, Melbourne, VIC, 3122, Australia.
| | - Kai Heng Tan
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Kar Leong Lim
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Vimala Gana Valu
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Sarah Mei Ying Fun
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Teng Rong Chye
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Hui Min Mak
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Wei Xiong Sim
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Sarah Liyana Musa
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Joscelyn Jun Quan Ng
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Nazurah Syazana Bte Nordin
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Nurhazlyn Bte Md Aidzil
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Zephyr Yu Wen Eng
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Punithavathy Manickavasagam
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
| | - Jen Yan New
- School of Life Sciences and Chemical Technology - Microalgal Research Group, Ngee Ann Polytechnic, Clementi, Singapore
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Watson J, Swoboda M, Aierzhati A, Wang T, Si B, Zhang Y. Biocrude Oil from Algal Bloom Microalgae: A Novel Integration of Biological and Thermochemical Techniques. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:1973-1983. [PMID: 33434016 DOI: 10.1021/acs.est.0c05924] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Algal bloom microalgae are abundant in polluted water systems, but their biocrude oil production potential via hydrothermal liquefaction (HTL) is limited. This study proposed a novel process that combined biological (dark fermentation) and thermochemical (HTL) techniques aimed at changing the feedstock characteristics to be more suitable for thermochemical conversion, herein named integrated dark fermentation-hydrothermal liquefaction (DF-HTL). DF-HTL conversion of algae significantly enhanced the biocrude oil yield (wt %), carbon content (mol), energy content (MJ), and energy conversion ratios by 9.8, 29.7, 40.0, and 61.0%, respectively, in comparison to the control. Furthermore, DF-HTL processing significantly decreased the aqueous byproduct yield (wt %), carbon content (mol), nitrogen content (mol), and ammonia content (mol) by 19.0, 38.4, 25.0, and 13.2%, respectively, in comparison to the control. Therefore, DF-HTL reduced the environmental impact associated with disposing of the wastewater byproduct. However, DF-HTL also augmented the nitrogen content (mol) of the biocrude oil by 42.2% in comparison to the control. The benefits of DF-HTL were attributed to the increased acid content, the incorporation of H2 as a processing gas, and the enhancement of the Maillard reaction, which shifted the distribution of reaction products from the aqueous phase to the biocrude oil phase. This article provides insights into the efficacy of a novel integrated biological-thermochemical processing method with distinct environmental and energetic advantages over conventional HTL that heightens the biocrude oil yield for feedstocks with a high carbohydrate and a high protein content.
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Affiliation(s)
- Jamison Watson
- Department of Agricultural & Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Megan Swoboda
- Department of Agricultural & Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Aersi Aierzhati
- Department of Agricultural & Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Tengfei Wang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, P. R. China
| | - Buchun Si
- Laboratory of Environment-Enhancing Energy (E2E), Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, P. R. China
| | - Yuanhui Zhang
- Department of Agricultural & Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
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Mahana A, Guliy OI, Mehta SK. Accumulation and cellular toxicity of engineered metallic nanoparticle in freshwater microalgae: Current status and future challenges. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 208:111662. [PMID: 33396172 DOI: 10.1016/j.ecoenv.2020.111662] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 11/05/2020] [Accepted: 11/11/2020] [Indexed: 06/12/2023]
Abstract
Metal nanoparticles (MNPs) are employed in a variety of medical and non-medical applications. Over the past two decades, there has been substantial research on the impact of metallic nanoparticles on algae and cyanobacteria, which are at the base of aquatic food webs. In this review, the current status of our understanding of mechanisms of uptake and toxicity of MNPs and metal ions released from MNPs after dissolution in the surrounding environment were discussed. Also, the trophic transfer of MNPs in aquatic food webs was analyzed in this review. Approximately all metallic nanoparticles cause toxicity in algae. Predominantly, MNPs are less toxic compared to their corresponding metal ions. There is a sufficient evidence for the trophic transfer of MNPs in aquatic food webs. Internalization of MNPs is indisputable in algae, however, mechanisms of their transmembrane transport are inadequately known. Most of the toxicity studies are carried out with solitary species of MNPs under laboratory conditions rarely found in natural ecosystems. Oxidative stress is the primary toxicity mechanism of MNPs, however, oxidative stress seems a general response predictable to other abiotic stresses. MNP-specific toxicity in an algal cell is yet unknown. Lastly, the mechanism of MNP internalization, toxicity, and excretion in algae needs to be understood carefully for the risk assessment of MNPs to aquatic biota.
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Affiliation(s)
- Abhijeet Mahana
- Laboratory of Algal Biology, Department of Botany, Mizoram University, Aizawl 796004, India
| | - Olga I Guliy
- Leading Researcher Microbial Physiology Lab., Institute of Biochemistry & Physiology of Plants & Microorganisms, Russian Academy of Sciences, Entuziastov av., 13, 410049 Saratov, Russia
| | - Surya Kant Mehta
- Laboratory of Algal Biology, Department of Botany, Mizoram University, Aizawl 796004, India.
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Habeebullah SFK, Alagarsamy S, Sattari Z, Al‐Haddad S, Fakhraldeen S, Al‐Ghunaim A, Al‐Yamani F. Effect of Enzymatic Hydrolysis on the Antioxidant Activity of Red and Green Seaweeds and Characterization of the Active Extracts. J AM OIL CHEM SOC 2021. [DOI: 10.1002/aocs.12463] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Sabeena Farvin K. Habeebullah
- Ecosystem‐Based Management of Marine Resources Program, Environment and Life Sciences Research Center Kuwait Institute for Scientific Research PO Box 1638 Salmiya 22017 Kuwait
| | - Surendraraj Alagarsamy
- Ecosystem‐Based Management of Marine Resources Program, Environment and Life Sciences Research Center Kuwait Institute for Scientific Research PO Box 1638 Salmiya 22017 Kuwait
| | - Zainab Sattari
- Ecosystem‐Based Management of Marine Resources Program, Environment and Life Sciences Research Center Kuwait Institute for Scientific Research PO Box 1638 Salmiya 22017 Kuwait
| | - Sakinah Al‐Haddad
- Ecosystem‐Based Management of Marine Resources Program, Environment and Life Sciences Research Center Kuwait Institute for Scientific Research PO Box 1638 Salmiya 22017 Kuwait
| | - Saja Fakhraldeen
- Ecosystem‐Based Management of Marine Resources Program, Environment and Life Sciences Research Center Kuwait Institute for Scientific Research PO Box 1638 Salmiya 22017 Kuwait
| | - Aws Al‐Ghunaim
- Ecosystem‐Based Management of Marine Resources Program, Environment and Life Sciences Research Center Kuwait Institute for Scientific Research PO Box 1638 Salmiya 22017 Kuwait
| | - Faiza Al‐Yamani
- Ecosystem‐Based Management of Marine Resources Program, Environment and Life Sciences Research Center Kuwait Institute for Scientific Research PO Box 1638 Salmiya 22017 Kuwait
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Chae Y, Kim L, Kim D, Cui R, Lee J, An YJ. Deriving hazardous concentrations of phenol in soil ecosystems using a species sensitivity distribution approach. JOURNAL OF HAZARDOUS MATERIALS 2020; 399:123036. [PMID: 32526444 DOI: 10.1016/j.jhazmat.2020.123036] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 05/06/2020] [Accepted: 05/24/2020] [Indexed: 06/11/2023]
Abstract
Phenol is widely used in many industries, and chemical accidents involving phenol have frequently occurred around the world, resulting in the investigation of phenol toxicity in humans, mammals, and aquatic organisms. However, very few studies have investigated phenol toxicity in terrestrial ecosystems. Therefore, we investigated the acute and chronic toxicity of phenol using various soil organisms, including Chlamydomonas reinhardtii, Chlorococcum infusionum, Folsomia candida, Oryza sativa, Raphanus sativus, Pinus densiflora, and Eisenia fetida. The data obtained were used to calculate hazardous concentrations for 5% of species (HC5) for phenol based on a species sensitivity distribution approach. The acute and chronic soil HC5 values for phenol were estimated to be 18.4 and 0.3 mg kg-1, respectively. To the best of our knowledge, this is the first study to conduct battery testing and calculate hazardous concentrations to assess the risk posed by phenol in terrestrial ecosystems. The results can be used to establish standards or strategies to protect terrestrial environments against unintended phenol contamination.
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Affiliation(s)
- Yooeun Chae
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Lia Kim
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Dokyung Kim
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Rongxue Cui
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Jieun Lee
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Youn-Joo An
- Department of Environmental Health Science, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea.
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80
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Khan AK, Kausar H, Jaferi SS, Drouet S, Hano C, Abbasi BH, Anjum S. An Insight into the Algal Evolution and Genomics. Biomolecules 2020; 10:E1524. [PMID: 33172219 PMCID: PMC7694994 DOI: 10.3390/biom10111524] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 11/02/2020] [Accepted: 11/05/2020] [Indexed: 01/06/2023] Open
Abstract
With the increase in biotechnological, environmental, and nutraceutical importance of algae, about 100 whole genomic sequences of algae have been published, and this figure is expected to double in the coming years. The phenotypic and ecological diversity among algae hints at the range of functional capabilities encoded by algal genomes. In order to explore the biodiversity of algae and fully exploit their commercial potential, understanding their evolutionary, structural, functional, and developmental aspects at genomic level is a pre-requisite. So forth, the algal genomic analysis revealed us that algae evolved through endosymbiotic gene transfer, giving rise to around eight phyla. Amongst the diverse algal species, the unicellular green algae Chlamydomonas reinhardtii has attained the status of model organism as it is an ideal organism to elucidate the biological processes critical to plants and animals, as well as commercialized to produce range of bio-products. For this review, an overview of evolutionary process of algae through endosymbiosis in the light of genomics, as well as the phylogenomic, studies supporting the evolutionary process of algae was reviewed. Algal genomics not only helped us to understand the evolutionary history of algae but also may have an impact on our future by helping to create algae-based products and future biotechnological approaches.
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Affiliation(s)
- Amna Komal Khan
- Department of Biotechnology, Kinnaird College for Women, Lahore 54000, Pakistan; (A.K.K.); (H.K.); (S.S.J.)
| | - Humera Kausar
- Department of Biotechnology, Kinnaird College for Women, Lahore 54000, Pakistan; (A.K.K.); (H.K.); (S.S.J.)
| | - Syyada Samra Jaferi
- Department of Biotechnology, Kinnaird College for Women, Lahore 54000, Pakistan; (A.K.K.); (H.K.); (S.S.J.)
| | - Samantha Drouet
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRAE USC1328, Université d’Orléans, 28000 Chartres, France; (S.D.); (C.H.)
| | - Christophe Hano
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRAE USC1328, Université d’Orléans, 28000 Chartres, France; (S.D.); (C.H.)
| | - Bilal Haider Abbasi
- Department of Biotechnology, Quaid-i-Azam University, Islamabad 45320, Pakistan;
| | - Sumaira Anjum
- Department of Biotechnology, Kinnaird College for Women, Lahore 54000, Pakistan; (A.K.K.); (H.K.); (S.S.J.)
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81
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Single cell ICP-MS using on line sample introduction systems: Current developments and remaining challenges. Trends Analyt Chem 2020. [DOI: 10.1016/j.trac.2020.116042] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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82
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Kono M, Kon Y, Ohmura Y, Satta Y, Terai Y. In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis. BMC Genomics 2020; 21:671. [PMID: 32993496 PMCID: PMC7526373 DOI: 10.1186/s12864-020-07086-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Accepted: 09/21/2020] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND Symbiosis is central to ecosystems and has been an important driving force of the diversity of life. Close and long-term interactions are known to develop cooperative molecular mechanisms between the symbiotic partners and have often given them new functions as symbiotic entities. In lichen symbiosis, mutualistic relationships between lichen-forming fungi and algae and/or cyanobacteria produce unique features that make lichens adaptive to a wide range of environments. Although the morphological, physiological, and ecological uniqueness of lichens has been described for more than a century, the genetic mechanisms underlying this symbiosis are still poorly known. RESULTS This study investigated the fungal-algal interaction specific to the lichen symbiosis using Usnea hakonensis as a model system. The whole genome of U. hakonensis, the fungal partner, was sequenced by using a culture isolated from a natural lichen thallus. Isolated cultures of the fungal and the algal partners were co-cultured in vitro for 3 months, and thalli were successfully resynthesized as visible protrusions. Transcriptomes of resynthesized and natural thalli (symbiotic states) were compared to that of isolated cultures (non-symbiotic state). Sets of fungal and algal genes up-regulated in both symbiotic states were identified as symbiosis-related genes. CONCLUSION From predicted functions of these genes, we identified genetic association with two key features fundamental to the symbiotic lifestyle in lichens. The first is establishment of a fungal symbiotic interface: (a) modification of cell walls at fungal-algal contact sites; and (b) production of a hydrophobic layer that ensheaths fungal and algal cells;. The second is symbiosis-specific nutrient flow: (a) the algal supply of photosynthetic product to the fungus; and (b) the fungal supply of phosphorous and nitrogen compounds to the alga. Since both features are widespread among lichens, our result may indicate important facets of the genetic basis of the lichen symbiosis.
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Affiliation(s)
- Mieko Kono
- SOKENDAI (The Graduate University for Advanced Studies), Department of Evolutionary Studies of Biosystems, Shonan Village, Hayama, Kanagawa, 240-0193, Japan.
- Department of Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05, Stockholm, Sweden.
| | - Yoshiaki Kon
- Tokyo Metropolitan Hitotsubashi High School, 1-12-13 Higashikanda, Chiyoda-ku, Tokyo, 101-0031, Japan
| | - Yoshihito Ohmura
- Department of Botany, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki, 305-0005, Japan
| | - Yoko Satta
- SOKENDAI (The Graduate University for Advanced Studies), Department of Evolutionary Studies of Biosystems, Shonan Village, Hayama, Kanagawa, 240-0193, Japan
| | - Yohey Terai
- SOKENDAI (The Graduate University for Advanced Studies), Department of Evolutionary Studies of Biosystems, Shonan Village, Hayama, Kanagawa, 240-0193, Japan
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83
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Genomic and transcriptomic landscapes and evolutionary dynamics of molluscan glycoside hydrolase families with implications for algae-feeding biology. Comput Struct Biotechnol J 2020; 18:2744-2756. [PMID: 33101612 PMCID: PMC7560691 DOI: 10.1016/j.csbj.2020.09.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 09/10/2020] [Accepted: 09/11/2020] [Indexed: 01/03/2023] Open
Abstract
Genome-wide characterization of GH families is conducted for Mollusca. GH9, GH10, GH18 and GH20 families are remarkably expanded in molluscs. The wide adoption of CBMs likely facilitates the hydrolysis of polysaccharides. Hepatopancreas is the main organ for the prominent expression of GH families. Functional divergence of GH families possibly contributes to their adaptive roles.
The hydrolysis of sugar-containing compounds by glycoside hydrolases (GHs) plays essential roles in many major biological processes, but to date our systematic understanding of the functional diversity and evolution of GH families remains largely limited to a few well-studied terrestrial animals. Molluscs represent the largest marine phylum in the animal kingdom, and many of them are herbivorous that utilize algae as a main nutritional source, making them good subjects for studying the functional diversity and adaptive evolution of GH families. In the present study, we conducted genome-wide identification and functional and evolutionary analysis of all GH families across major molluscan lineages. We revealed that the remarkable expansion of the GH9, GH10, GH18 and GH20 families and the wide adoption of carbohydrate-binding modules in molluscan expanded GH families likely contributed to the efficient hydrolysis of marine algal polysaccharides and were involved in the consolidation of molluscan algae-feeding habits. Gene expression and network analysis revealed the hepatopancreas as the main organ for the prominent expression of approximately half of the GH families (well corresponding to the digestive roles of the hepatopancreas) and key or hub GHs in the coexpression gene network with potentially diverse functionalities. We also revealed the evolutionary signs of differential expansion and functional divergence of the GH family, which possibly contributed to lineage-specific adaptation. Systematic analysis of GH families at both genomic and transcriptomic levels provides important clues for understanding the functional divergence and evolution of GH gene families in molluscs in relation to their algae-feeding biology.
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84
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Landi S, Esposito S. Bioinformatic Characterization of Sulfotransferase Provides New Insights for the Exploitation of Sulfated Polysaccharides in Caulerpa. Int J Mol Sci 2020; 21:ijms21186681. [PMID: 32932673 PMCID: PMC7554865 DOI: 10.3390/ijms21186681] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 09/01/2020] [Accepted: 09/11/2020] [Indexed: 12/19/2022] Open
Abstract
Caulerpa is an unusual algal genus from Caulerpaceae (Chlorophyta, Bryopsidales). Species from this family produce a wide range of metabolites suitable for biotechnology applications. Among these, sulfated polysaccharides (SPs) are often highly desirable for pharmaceutical and nutraceutical applications. Here, we provide a classification of sulfotransferases from Caulerpa; these important enzymes catalyze the nodal step for the biosynthesis of SPs. For this, we performed phylogenetic, genomic, expression analyses and prediction of the protein structure on sulfotransferases from Caulerpa. Sequences, domains and structures of sulfotransferases generally shared common characteristics with other plants and algae. However, we found an extensive duplication of sulfotransferase gene family, which is unique among the green algae. Expression analysis revealed specific transcript abundance in the pinnae and rachis of the alga. The unique genomic features could be utilized for the production of complex SPs, which require multiple and specific sulfation reactions. The expansion of this gene family in Caulerpaceae would have resulted in a number of proteins characterizing the unique SPs found in these algae. We provide a putative biosynthetic pathway of SPs, indicating the unique characteristics of this pathway in Caulerpa species. These data may help in the future selection of Caulerpa species for both commercial applications and genetic studies to improve the synthesis of valuable products from Caulerpa.
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85
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Lin J, Chen Y, Yan H, Nahidian B, Hu Q, Han D. High-throughput fluorescence-activated cell sorting for cell wall-deficient microalgal mutants screening. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.102011] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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86
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Rivero Arze A, Manier N, Chatel A, Mouneyrac C. Characterization of the nano-bio interaction between metallic oxide nanomaterials and freshwater microalgae using flow cytometry. Nanotoxicology 2020; 14:1082-1095. [PMID: 32810409 DOI: 10.1080/17435390.2020.1808106] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Since nanomaterials (NMs) are particulate contaminants, their first contact with organisms is a physical encounter ruled by physic-chemical processes that can determinate the potential NMs accumulation, toxicity, and trophic transfer. Freshwater ecosystems often become a final depository for NMs, so they can get in contact with the biota, especially primary organisms as algae. There are almost none comparative studies of this interaction using various NMs in the same conditions. This work identifies, analyzes, and compares the algae-NMs interaction by flow cytometry after a short-term contact test in which three freshwater algae (Raphidocelis subcapitata, Desmodesmus subspicatus, and Chlorella vulgaris) interact individually with a set of twelve metallic oxide NMs. Dose-response profiles and differences in the algae-NMs interaction were found according to each algae species (C. vulgaris had the most affinity, starting the interaction from 0.5 mg/L and D. subspicatus had the less affinity starting at 5 mg/L). Flow cytometry results were confirmed by optical microscopy. Some NMs characteristics were identified as key-factors that govern the algae-NMs interaction: NMs composition (no interaction for SiO2 NMs), surface electric charge (higher interaction for the positively charged NMs and lower interaction for the negatively charged ones) and crystalline form (for TiO2 NMs). The presented method can be useful for a rapid determination of the interaction between free cells organisms as microalgae and (nano)particulate substances.
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Affiliation(s)
- Andrea Rivero Arze
- French National Institute for Industrial Environment and Risks (INERIS), Parc Technologique ALATA, Verneuil en Halatte, France
| | - Nicolas Manier
- French National Institute for Industrial Environment and Risks (INERIS), Parc Technologique ALATA, Verneuil en Halatte, France
| | - Amélie Chatel
- Catholic University of the West (UCO), Laboratoire Mer, Molécules, Santé (MMS, EA 2160), Angers, France
| | - Catherine Mouneyrac
- Catholic University of the West (UCO), Laboratoire Mer, Molécules, Santé (MMS, EA 2160), Angers, France
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87
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Marlina, Iqhrammullah M, Saleha S, Fathurrahmi, Maulina FP, Idroes R. Polyurethane film prepared from ball-milled algal polyol particle and activated carbon filler for NH 3-N removal. Heliyon 2020; 6:e04590. [PMID: 32904302 PMCID: PMC7452532 DOI: 10.1016/j.heliyon.2020.e04590] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 07/14/2020] [Accepted: 07/28/2020] [Indexed: 01/28/2023] Open
Abstract
This research offers a novel approach of free chemical preparation to obtain algae-based biopolyol through a ball milling method. The algae-based polyurethane (AlgPU) film was obtained from a casting solution made of ball-milled algal polyol particle and methylene diphenyl diisocyanate (MDI). The characteristics of the material had been investigated using Fourier Transform Infrared, Scanning Electron Microscopy – Electron Dispersive Spectroscopy, Differential Scanning Calorimetry, and Tensile Strength Analysis. The surface area was determined by Brunauer–Emmett–Teller (BET) isotherm, meanwhile the total pore volume was by Barrett-Joyner-Halenda (BJH) isotherm, based on the adsorption-desorption of N2. The addition of activated carbon contributed in the increase of functional group and surface area, which were important for the NH3–N removal. As a result, the adsorption capacity increased greatly after the addition of activated carbon (from 187.84 to 393.43 μg/g). The results also suggested AlgPU as a good matrix for immobilizing activated carbon filler. The adsorption shows a better fit with Langmuir isotherm model, with R2 = 0.97487 and root-mean-square error (RMSE) = 33.91952, compared to Freundlich isotherm model (R2 = 0.96477 and RMSE = 44.05388). This means the NH3–N adsorption followed the assumption of homogenous and monolayer adsorption, in which the maximum adsorption was found to be 797.95 μg/g. This research suggests the potential of newly developed material for NH3–N removal.
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Affiliation(s)
- Marlina
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Syiah Kuala, Kopelma Darussalam, Banda Aceh 23111, Indonesia
| | - Muhammad Iqhrammullah
- Graduate School of Mathematics and Applied Sciences, Universitas Syiah Kuala, Kopelma Darussalam, Banda Aceh 23111, Indonesia
| | - Sitti Saleha
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Syiah Kuala, Kopelma Darussalam, Banda Aceh 23111, Indonesia
| | - Fathurrahmi
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Syiah Kuala, Kopelma Darussalam, Banda Aceh 23111, Indonesia
| | - Fandini Putri Maulina
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Syiah Kuala, Kopelma Darussalam, Banda Aceh 23111, Indonesia
| | - Rinaldi Idroes
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Syiah Kuala, Kopelma Darussalam, Banda Aceh 23111, Indonesia.,Department of Pharmacy, Faculty of Mathematics and Natural Sciences, Universitas Syiah Kuala, Kopelma Darussalam, Banda Aceh 23111, Indonesia
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88
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Domozych DS, Sun L, Palacio-Lopez K, Reed R, Jeon S, Li M, Jiao C, Sørensen I, Fei Z, Rose JKC. Endomembrane architecture and dynamics during secretion of the extracellular matrix of the unicellular charophyte, Penium margaritaceum. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:3323-3339. [PMID: 31974570 PMCID: PMC7289721 DOI: 10.1093/jxb/eraa039] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 01/21/2020] [Indexed: 05/02/2023]
Abstract
The extracellular matrix (ECM) of many charophytes, the assemblage of green algae that are the sister group to land plants, is complex, produced in large amounts, and has multiple essential functions. An extensive secretory apparatus and endomembrane system are presumably needed to synthesize and secrete the ECM, but structural details of such a system have not been fully characterized. Penium margaritaceum is a valuable unicellular model charophyte for studying secretion dynamics. We report that Penium has a highly organized endomembrane system, consisting of 150-200 non-mobile Golgi bodies that process and package ECM components into different sets of vesicles that traffic to the cortical cytoplasm, where they are transported around the cell by cytoplasmic streaming. At either fixed or transient areas, specific cytoplasmic vesicles fuse with the plasma membrane and secrete their constituents. Extracellular polysaccharide (EPS) production was observed to occur in one location of the Golgi body and sometimes in unique Golgi hybrids. Treatment of cells with brefeldin A caused disruption of the Golgi body, and inhibition of EPS secretion and cell wall expansion. The structure of the endomembrane system in Penium provides mechanistic insights into how extant charophytes generate large quantities of ECM, which in their ancestors facilitated the colonization of land.
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Affiliation(s)
- David S Domozych
- Department of Biology, Skidmore College, Saratoga Springs, NY, USA
- Correspondence:
| | - Li Sun
- Department of Biology, Skidmore College, Saratoga Springs, NY, USA
| | | | - Reagan Reed
- Department of Biology, Skidmore College, Saratoga Springs, NY, USA
| | - Susan Jeon
- Department of Biology, Skidmore College, Saratoga Springs, NY, USA
| | - Mingjia Li
- Department of Biology, Skidmore College, Saratoga Springs, NY, USA
| | - Chen Jiao
- Boyce Thompson Institute, Ithaca, NY, USA
| | - Iben Sørensen
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
| | - Zhangjun Fei
- Boyce Thompson Institute, Ithaca, NY, USA
- U.S. Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, USA
| | - Jocelyn K C Rose
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
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Bader AN, Sanchez Rizza L, Consolo VF, Curatti L. Efficient saccharification of microalgal biomass by Trichoderma harzianum enzymes for the production of ethanol. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101926] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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90
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Park SH, Kim HS, Kalita PJ, Choi SB. Structural and functional similarities and differences in nucleolar Pumilio RNA-binding proteins between Arabidopsis and the charophyte Chara corallina. BMC PLANT BIOLOGY 2020; 20:230. [PMID: 32448230 PMCID: PMC7247198 DOI: 10.1186/s12870-020-02444-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Accepted: 05/13/2020] [Indexed: 05/03/2023]
Abstract
BACKGROUND Pumilio RNA-binding proteins are evolutionarily conserved throughout eukaryotes and are involved in RNA decay, transport, and translation repression in the cytoplasm. Although a majority of Pumilio proteins function in the cytoplasm, two nucleolar forms have been reported to have a function in rRNA processing in Arabidopsis. The species of the genus Chara have been known to be most closely related to land plants, as they share several characteristics with modern Embryophyta. RESULTS In this study, we identified two putative nucleolar Pumilio protein genes, namely, ChPUM2 and ChPUM3, from the transcriptome of Chara corallina. Of the two ChPUM proteins, ChPUM2 was most similar in amino acid sequence (27% identity and 45% homology) and predicted protein structure to Arabidopsis APUM23, while ChPUM3 was similar to APUM24 (35% identity and 54% homology). The transient expression of 35S:ChPUM2-RFP and 35S:ChPUM3-RFP showed nucleolar localization of fusion proteins in tobacco leaf cells, similar to the expression of 35S:APUM23-GFP and 35S:APUM24-GFP. Moreover, 35S:ChPUM2 complemented the morphological defects of the apum23 phenotypes but not those of apum24, while 35S:ChPUM3 could not complement the apum23 and apum24 mutants. Similarly, the 35S:ChPUM2/apum23 plants rescued the pre-rRNA processing defect of apum23, but 35S:ChPUM3/apum24+/- plants did not rescue that of apum24. Consistent with these complementation results, a known target RNA-binding sequence at the end of the 18S rRNA (5'-GGAAUUGACGG) for APUM23 was conserved in Arabidopsis and C. corallina, whereas a target region of ITS2 pre-rRNA for APUM24 was 156 nt longer in C. corallina than in A. thaliana. Moreover, ChPUM2 and APUM23 were predicted to have nearly identical structures, but ChPUM3 and APUM24 have different structures in the 5th C-terminal Puf RNA-binding domain, which had a longer random coil in ChPUM3 than in APUM24. CONCLUSIONS ChPUM2 of C. corallina was functional in Arabidopsis, similar to APUM23, but ChPUM3 did not substitute for APUM24 in Arabidopsis. Protein homology modeling showed high coverage between APUM23 and ChPUM2, but displayed structural differences between APUM24 and ChPUM3. Together with the protein structure of ChPUM3 itself, a short ITS2 of Arabidopsis pre-rRNA may interrupt the binding of ChPUM3 to 3'-extended 5.8S pre-rRNA.
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Affiliation(s)
- Su Hyun Park
- Division of Bioscience and Bioinformatics, Myongji University, Yongin, Kyunggi-do, 449-728, South Korea
| | - Hyung-Sae Kim
- Division of Bioscience and Bioinformatics, Myongji University, Yongin, Kyunggi-do, 449-728, South Korea
| | - Prakash Jyoti Kalita
- Division of Bioscience and Bioinformatics, Myongji University, Yongin, Kyunggi-do, 449-728, South Korea
| | - Sang-Bong Choi
- Division of Bioscience and Bioinformatics, Myongji University, Yongin, Kyunggi-do, 449-728, South Korea.
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91
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Xue CX, Zhang H, Lin HY, Sun Y, Luo D, Huang Y, Zhang XH, Luo H. Ancestral niche separation and evolutionary rate differentiation between sister marine flavobacteria lineages. Environ Microbiol 2020; 22:3234-3247. [PMID: 32390223 DOI: 10.1111/1462-2920.15065] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Revised: 05/05/2020] [Accepted: 05/07/2020] [Indexed: 12/30/2022]
Abstract
Marine flavobacteria are specialists for polysaccharide degradation. They dominate in habitats enriched with polysaccharides, but are also prevalent in pelagic environments where polysaccharides are less available. These niches are likely occupied by distinct lineages, but evolutionary processes underlying their niche differentiation remain elusive. Here, genomic analyses and physiological assays indicate that the sister flavobacteria lineages Leeuwenhoekiella and Nonlabens likely explore polysaccharide-rich macroalgae and polysaccharide-poor pelagic niches respectively. Phylogenomic analyses inferred that the niche separation likely occurred anciently and coincided with increased sequence evolutionary rate in Nonlabens compared with Leeuwenhoekiella. Further analyses ruled out the known mechanisms likely driving evolutionary rate acceleration, including reduced selection efficiency, decreased generation time and increased mutation rate. In particular, the mutation rates were determined using an unbiased experimental method, which measures the present-day populations and may not reflect ancestral populations. These data collectively lead to a new hypothesis that an ancestral and transient mutation rate increase resulted in evolutionary rate increase in Nonlabens. This hypothesis was supported by inferring that gains and losses of genes involved in SOS response, a mechanism known to drive transiently increased mutation rate, coincided with evolutionary rate acceleration. Our analyses highlight the evolutionary mechanisms underlying niche differentiation of flavobacteria lineages.
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Affiliation(s)
- Chun-Xu Xue
- College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.,Simon F. S. Li Marine Science Laboratory, School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR
| | - Hao Zhang
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR
| | - He-Yu Lin
- College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China
| | - Ying Sun
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR
| | - Danli Luo
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR
| | - Yongjie Huang
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR
| | - Xiao-Hua Zhang
- College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China
| | - Haiwei Luo
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR.,Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, 518000, China
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92
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Gojkovic Z, Shchukarev A, Ramstedt M, Funk C. Cryogenic X-ray photoelectron spectroscopy determines surface composition of algal cells and gives insights into their spontaneous sedimentation. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101836] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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93
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Oliver MJ, Farrant JM, Hilhorst HWM, Mundree S, Williams B, Bewley JD. Desiccation Tolerance: Avoiding Cellular Damage During Drying and Rehydration. ANNUAL REVIEW OF PLANT BIOLOGY 2020; 71:435-460. [PMID: 32040342 DOI: 10.1146/annurev-arplant-071219-105542] [Citation(s) in RCA: 112] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Desiccation of plants is often lethal but is tolerated by the majority of seeds and by vegetative tissues of only a small number of land plants. Desiccation tolerance is an ancient trait, lost from vegetative tissues following the appearance of tracheids but reappearing in several lineages when selection pressures favored its evolution. Cells of all desiccation-tolerant plants and seeds must possess a core set of mechanisms to protect them from desiccation- and rehydration-induced damage. This review explores how desiccation generates cell damage and how tolerant cells assuage the complex array of mechanical, structural, metabolic, and chemical stresses and survive.Likewise, the stress of rehydration requires appropriate mitigating cellular responses. We also explore what comparative genomics, both structural and responsive, have added to our understanding of cellular protection mechanisms induced by desiccation, and how vegetative desiccation tolerance circumvents destructive, stress-induced cell senescence.
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Affiliation(s)
- Melvin J Oliver
- Plant Genetics Research Unit, US Department of Agriculture, Agricultural Research Service, Columbia, Missouri 65211, USA
- Current affiliation: Division of Plant Sciences, Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211, USA;
| | - Jill M Farrant
- Department of Molecular and Cell Biology, University of Cape Town, Cape Town 7700, South Africa;
| | - Henk W M Hilhorst
- Laboratory of Plant Physiology, Wageningen University, 6706 PB Wageningen, The Netherlands;
| | - Sagadevan Mundree
- Centre for Tropical Crops and Biocommodities, Queensland University of Technology, Gardens Point Campus, Brisbane, 4001 Queensland, Australia; ,
| | - Brett Williams
- Centre for Tropical Crops and Biocommodities, Queensland University of Technology, Gardens Point Campus, Brisbane, 4001 Queensland, Australia; ,
| | - J Derek Bewley
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada;
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94
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Kugler A, Kumari P, Kokabi K, Itkin M, Malitsky S, Khozin-Goldberg I. Resilience to Freezing in the Vegetative Cells of the Microalga Lobosphaera incisa (Trebouxiophyceae, Chlorophyta). JOURNAL OF PHYCOLOGY 2020; 56:334-345. [PMID: 31715644 DOI: 10.1111/jpy.12948] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Accepted: 10/28/2019] [Indexed: 06/10/2023]
Abstract
The chlorophyte microalga Lobosphaera incisa was isolated from the snowy slopes of Mt. Tateyama in Japan. This microalga stores exceptionally high amounts of the omega-6 LC-PUFA arachidonic acid in triacylglycerols, and therefore represents a potent photosynthetic source for this essential LC-PUFA. Assuming that freezing tolerance may play a role in adaptation of L. incisa to specific ecological niches, we examined the capability of L. incisa to tolerate extreme sub-zero temperatures. We report here, that the vegetative cells of L. incisa survived freezing at -20°C and -80°C (over 1 month), without cryoprotective agents or prior treatments. Cells successfully recovered upon thawing and proliferated under optimal growth conditions (25°C). However, cells frozen at -80°C showed better recovery and lower cellular ROS generation upon thawing, compared to those preserved at -20°C. Photosynthetic yield of PSII, estimated by Fv /Fm , temporarily decreased at day 1 post freezing and resumed to the original level at day 3. Interestingly, the thawed algal cultures produced a higher level of chlorophylls, exceeding the control culture. The polar metabolome of the vegetative cells comprised a range of compatible solutes, dominated by glutamate, sucrose, and proline. We posit that the presence of endogenous cryoprotectants, a rigid multilayer cell wall, the high LC-PUFA content in membrane lipids, and putative cold-responsive proteins may contribute to the retention of functionality upon recovery from the frozen state, and therefore for the survival under cryospheric conditions. From the applied perspective, this beneficial property holds promise for the cryopreservation of starter cultures for research and commercial purposes.
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Affiliation(s)
- Amit Kugler
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
| | - Puja Kumari
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
| | - Kamilya Kokabi
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
| | - Maxim Itkin
- Metabolic Profiling Unit, Life Science Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Sergey Malitsky
- Metabolic Profiling Unit, Life Science Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Inna Khozin-Goldberg
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
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95
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Stark JR, Cardon ZG, Peredo EL. Extraction of high-quality, high-molecular-weight DNA depends heavily on cell homogenization methods in green microalgae. APPLICATIONS IN PLANT SCIENCES 2020; 8:e11333. [PMID: 32185123 PMCID: PMC7073325 DOI: 10.1002/aps3.11333] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 11/08/2019] [Indexed: 06/10/2023]
Abstract
PREMISE New sequencing technologies have facilitated genomic studies in green microalgae; however, extracting high-quality DNA is often a bottleneck for long-read sequencing. METHODS AND RESULTS Here, we present a low-cost, highly transferrable method for the extraction of high-molecular-weight (HMW), high-purity DNA from microalgae. We first determined the effect of sample preparation on DNA quality using three homogenization methods: manual grinding using a mini-pestle, automatic grinding using a vortex adapter, and grinding in liquid nitrogen. We demonstrated the versatility of grinding in liquid nitrogen followed by a modified cetyltrimethylammonium bromide (CTAB) extraction across a suite of aquatic- and desert-evolved algal taxa. Finally, we tested the protocol's robustness by doubling the input material to increase yield, producing per sample up to 20 μg of high-purity DNA longer than 21.2 kbp. CONCLUSIONS All homogenization methods produced DNA within acceptable parameters for purity, but only liquid nitrogen grinding resulted in HMW DNA. The optimization of cell lysis while minimizing DNA shearing is therefore crucial for the isolation of DNA for long-read genomic sequencing because template DNA length strongly affects read output and length.
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Affiliation(s)
- Jordan R. Stark
- Ecosystems CenterMarine Biological Laboratory7 MBL StreetWoods HoleMassachusetts02543USA
| | - Zoe G. Cardon
- Ecosystems CenterMarine Biological Laboratory7 MBL StreetWoods HoleMassachusetts02543USA
| | - Elena L. Peredo
- Ecosystems CenterMarine Biological Laboratory7 MBL StreetWoods HoleMassachusetts02543USA
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96
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Liu J, Pemberton B, Lewis J, Scales PJ, Martin GJO. Wastewater treatment using filamentous algae - A review. BIORESOURCE TECHNOLOGY 2020; 298:122556. [PMID: 31843358 DOI: 10.1016/j.biortech.2019.122556] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 12/02/2019] [Accepted: 12/02/2019] [Indexed: 06/10/2023]
Abstract
Wastewater treatment using algae is a promising approach for efficient removal of contaminating nutrients and their conversion into useful products. Monocultures of filamentous algae provide easier harvesting compared to microalgae, and better control of biomass quality than polyculture systems such as algal turf scrubbers. In this review, recent research into wastewater treatment using freshwater filamentous algae is compiled and critically analysed. Focus is given to filamentous algae monocultures, with key relevant findings from microalgae and polyculture systems discussed and compared. The application of monocultures of filamentous algae is an emerging area of research. Gaps are identified in our understanding of key aspects important to large-scale system design, including criteria for species selection, influence of nutrient type and loading, inorganic carbon supply, algae-bacteria interactions, and parameters such as pond depth, mixing and harvesting regimes. This technology has much promise, however future research is needed to maximise productivity and wastewater treatment efficiency.
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Affiliation(s)
- Jiajun Liu
- Algal Processing Group, Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Bill Pemberton
- Melbourne Water Corporation, 990 La Trobe Street, Docklands 3008, Australia
| | - Justin Lewis
- Melbourne Water Corporation, 990 La Trobe Street, Docklands 3008, Australia
| | - Peter J Scales
- Algal Processing Group, Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Gregory J O Martin
- Algal Processing Group, Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia.
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97
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Pommerrenig B, Diehn TA, Bernhardt N, Bienert MD, Mitani-Ueno N, Fuge J, Bieber A, Spitzer C, Bräutigam A, Ma JF, Chaumont F, Bienert GP. Functional evolution of nodulin 26-like intrinsic proteins: from bacterial arsenic detoxification to plant nutrient transport. THE NEW PHYTOLOGIST 2020; 225:1383-1396. [PMID: 31550387 DOI: 10.1111/nph.16217] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/17/2019] [Indexed: 05/18/2023]
Abstract
Nodulin 26-like intrinsic proteins (NIPs) play essential roles in transporting the nutrients silicon and boron in seed plants, but the evolutionary origin of this transport function and the co-permeability to toxic arsenic remains enigmatic. Horizontal gene transfer of a yet uncharacterised bacterial AqpN-aquaporin group was the starting-point for plant NIP evolution. We combined intense sequence, phylogenetic and genetic context analyses and a mutational approach with various transport assays in oocytes and plants to resolve the transorganismal and functional evolution of bacterial and algal and terrestrial plant NIPs and to reveal their molecular transport specificity features. We discovered that aqpN genes are prevalently located in arsenic resistance operons of various prokaryotic phyla. We provided genetic and functional evidence that these proteins contribute to the arsenic detoxification machinery. We identified NIPs with the ancestral bacterial AqpN selectivity filter composition in algae, liverworts, moss, hornworts and ferns and demonstrated that these archetype plant NIPs and their prokaryotic progenitors are almost impermeable to water and silicon but transport arsenic and boron. With a mutational approach, we demonstrated that during evolution, ancestral NIP selectivity shifted to allow subfunctionalisations. Together, our data provided evidence that evolution converted bacterial arsenic efflux channels into essential seed plant nutrient transporters.
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Affiliation(s)
- Benjamin Pommerrenig
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
- Division of Plant Physiology, University Kaiserslautern, 67663, Kaiserslautern, Germany
| | - Till A Diehn
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
| | - Nadine Bernhardt
- Genebank Department, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
| | - Manuela D Bienert
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
| | - Namiki Mitani-Ueno
- Institute of Plant Science and Resources, Okayama University, 710-0046, Kurashiki, Japan
| | - Jacqueline Fuge
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
| | - Annett Bieber
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
| | - Christoph Spitzer
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
| | - Andrea Bräutigam
- Computational Biology, Faculty of Biology, Bielefeld University, 33615, Bielefeld, Germany
| | - Jian Feng Ma
- Institute of Plant Science and Resources, Okayama University, 710-0046, Kurashiki, Japan
| | - François Chaumont
- Louvain Institute of Biomolecular Science and Technology, UC Louvain, 1348, Louvain-la-Neuve, Belgium
| | - Gerd P Bienert
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
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98
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Mnich E, Bjarnholt N, Eudes A, Harholt J, Holland C, Jørgensen B, Larsen FH, Liu M, Manat R, Meyer AS, Mikkelsen JD, Motawia MS, Muschiol J, Møller BL, Møller SR, Perzon A, Petersen BL, Ravn JL, Ulvskov P. Phenolic cross-links: building and de-constructing the plant cell wall. Nat Prod Rep 2020; 37:919-961. [PMID: 31971193 DOI: 10.1039/c9np00028c] [Citation(s) in RCA: 73] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Covering: Up to 2019Phenolic cross-links and phenolic inter-unit linkages result from the oxidative coupling of two hydroxycinnamates or two molecules of tyrosine. Free dimers of hydroxycinnamates, lignans, play important roles in plant defence. Cross-linking of bound phenolics in the plant cell wall affects cell expansion, wall strength, digestibility, degradability, and pathogen resistance. Cross-links mediated by phenolic substituents are particularly important as they confer strength to the wall via the formation of new covalent bonds, and by excluding water from it. Four biopolymer classes are known to be involved in the formation of phenolic cross-links: lignins, extensins, glucuronoarabinoxylans, and side-chains of rhamnogalacturonan-I. Lignins and extensins are ubiquitous in streptophytes whereas aromatic substituents on xylan and pectic side-chains are commonly assumed to be particular features of Poales sensu lato and core Caryophyllales, respectively. Cross-linking of phenolic moieties proceeds via radical formation, is catalyzed by peroxidases and laccases, and involves monolignols, tyrosine in extensins, and ferulate esters on xylan and pectin. Ferulate substituents, on xylan in particular, are thought to be nucleation points for lignin polymerization and are, therefore, of paramount importance to wall architecture in grasses and for the development of technology for wall disassembly, e.g. for the use of grass biomass for production of 2nd generation biofuels. This review summarizes current knowledge on the intra- and extracellular acylation of polysaccharides, and inter- and intra-molecular cross-linking of different constituents. Enzyme mediated lignan in vitro synthesis for pharmaceutical uses are covered as are industrial exploitation of mutant and transgenic approaches to control cell wall cross-linking.
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Affiliation(s)
- Ewelina Mnich
- Department of Plant and Environmental Sciences, University of Copenhagen, Denmark.
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Sanz Smachetti ME, Coronel CD, Salerno GL, Curatti L. Sucrose-to-ethanol microalgae-based platform using seawater. ALGAL RES 2020. [DOI: 10.1016/j.algal.2019.101733] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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100
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Ciancia M, Fernández PV, Leliaert F. Diversity of Sulfated Polysaccharides From Cell Walls of Coenocytic Green Algae and Their Structural Relationships in View of Green Algal Evolution. FRONTIERS IN PLANT SCIENCE 2020; 11:554585. [PMID: 33133113 PMCID: PMC7550628 DOI: 10.3389/fpls.2020.554585] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 09/02/2020] [Indexed: 05/05/2023]
Abstract
Seaweeds biosynthesize sulfated polysaccharides as key components of their cell walls. These polysaccharides are potentially interesting as biologically active compounds. Green macroalgae of the class Ulvophyceae comprise sulfated polysaccharides with great structural differences regarding the monosaccharide constituents, linearity of their backbones, and presence of other acidic substituents in their structure, including uronic acid residues and pyruvic acid. These structures have been thoroughly studied in the Ulvales and Ulotrichales, but only more recently have they been investigated with some detail in ulvophytes with giant multinucleate (coenocytic) cells, including the siphonous Bryopsidales and Dasycladales, and the siphonocladous Cladophorales. An early classification of these structurally heterogeneous polysaccharides was based on the presence of uronic acid residues in these molecules. In agreement with this classification based on chemical structures, sulfated polysaccharides of the orders Bryopsidales and Cladophorales fall in the same group, in which this acidic component is absent, or only present in very low quantities. The cell walls of Dasycladales have been less studied, and it remains unclear if they comprise sulfated polysaccharides of both types. Although in the Bryopsidales and Cladophorales the most important sulfated polysaccharides are arabinans and galactans (or arabinogalactans), their major structures are very different. The Bryopsidales produce sulfated pyruvylated 3-linked β-d-galactans, in most cases, with ramifications on C6. For some species, linear sulfated pyranosic β-l-arabinans have been described. In the Cladophorales, also sulfated pyranosic β-l-arabinans have been found, but 4-linked and highly substituted with side chains. These differences are consistent with recent molecular phylogenetic analyses, which indicate that the Bryopsidales and Cladophorales are distantly related. In addition, some of the Bryopsidales also biosynthesize other sulfated polysaccharides, i.e., sulfated mannans and sulfated rhamnans. The presence of sulfate groups as a distinctive characteristic of these biopolymers has been related to their adaptation to the marine environment. However, it has been shown that some freshwater algae from the Cladophorales also produce sulfated polysaccharides. In this review, structures of sulfated polysaccharides from bryopsidalean, dasycladalean, and cladophoralean green algae studied until now are described and analyzed based on current phylogenetic understanding, with the aim of unveiling the important knowledge gaps that still exist.
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Affiliation(s)
- Marina Ciancia
- Universidad de Buenos Aires, Facultad de Agronomía, Departamento de Biología Aplicada y Alimentos, Cátedra de Química de Biomoléculas, CIHIDECAR-CONICET, UBA, Buenos Aires, Argentina
- *Correspondence: Marina Ciancia, ; Frederik Leliaert,
| | - Paula Virginia Fernández
- Universidad de Buenos Aires, Facultad de Agronomía, Departamento de Biología Aplicada y Alimentos, Cátedra de Química de Biomoléculas, CIHIDECAR-CONICET, UBA, Buenos Aires, Argentina
| | - Frederik Leliaert
- Meise Botanic Garden, Meise, Belgium
- Ghent University, Faculty of Sciences, Biology Department, Ghent, Belgium
- *Correspondence: Marina Ciancia, ; Frederik Leliaert,
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