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Bustin A, Lima da Cruz G, Jaubert O, Lopez K, Botnar RM, Prieto C. High-dimensionality undersampled patch-based reconstruction (HD-PROST) for accelerated multi-contrast MRI. Magn Reson Med 2019; 81:3705-3719. [PMID: 30834594 PMCID: PMC6646908 DOI: 10.1002/mrm.27694] [Citation(s) in RCA: 67] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Revised: 01/23/2019] [Accepted: 01/23/2019] [Indexed: 12/14/2022]
Abstract
PURPOSE To develop a new high-dimensionality undersampled patch-based reconstruction (HD-PROST) for highly accelerated 2D and 3D multi-contrast MRI. METHODS HD-PROST jointly reconstructs multi-contrast MR images by exploiting the highly redundant information, on a local and non-local scale, and the strong correlation shared between the multiple contrast images. This is achieved by enforcing multi-dimensional low-rank in the undersampled images. 2D magnetic resonance fingerprinting (MRF) phantom and in vivo brain acquisitions were performed to evaluate the performance of HD-PROST for highly accelerated simultaneous T1 and T2 mapping. Additional in vivo experiments for reconstructing multiple undersampled 3D magnetization transfer (MT)-weighted images were conducted to illustrate the impact of HD-PROST for high-resolution multi-contrast 3D imaging. RESULTS In the 2D MRF phantom study, HD-PROST provided accurate and precise estimation of the T1 and T2 values in comparison to gold standard spin echo acquisitions. HD-PROST achieved good quality maps for the in vivo 2D MRF experiments in comparison to conventional low-rank inversion reconstruction. T1 and T2 values of white matter and gray matter were in good agreement with those reported in the literature for MRF acquisitions with reduced number of time point images (500 time point images, ~2.5 s scan time). For in vivo MT-weighted 3D acquisitions (6 different contrasts), HD-PROST achieved similar image quality than the fully sampled reference image for an undersampling factor of 6.5-fold. CONCLUSION HD-PROST enables multi-contrast 2D and 3D MR images in a short acquisition time without compromising image quality. Ultimately, this technique may increase the potential of conventional parameter mapping.
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Affiliation(s)
- Aurélien Bustin
- Department of Biomedical Engineering, School of Imaging Sciences & Biomedical EngineeringKing’s College London, King’s Health PartnersLondonUnited Kingdom
| | - Gastão Lima da Cruz
- Department of Biomedical Engineering, School of Imaging Sciences & Biomedical EngineeringKing’s College London, King’s Health PartnersLondonUnited Kingdom
| | - Olivier Jaubert
- Department of Biomedical Engineering, School of Imaging Sciences & Biomedical EngineeringKing’s College London, King’s Health PartnersLondonUnited Kingdom
| | - Karina Lopez
- Department of Biomedical Engineering, School of Imaging Sciences & Biomedical EngineeringKing’s College London, King’s Health PartnersLondonUnited Kingdom
| | - René M. Botnar
- Department of Biomedical Engineering, School of Imaging Sciences & Biomedical EngineeringKing’s College London, King’s Health PartnersLondonUnited Kingdom
- Escuela de IngenieríaPontificia Universidad Católica de ChileSantiagoChile
| | - Claudia Prieto
- Department of Biomedical Engineering, School of Imaging Sciences & Biomedical EngineeringKing’s College London, King’s Health PartnersLondonUnited Kingdom
- Escuela de IngenieríaPontificia Universidad Católica de ChileSantiagoChile
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102
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Tamir JI, Taviani V, Alley MT, Perkins B, Hart L, Obrien K, Wishah F, Sandberg JK, Anderson MJ, Turek JS, Willke TL, Lustig M, Vasanawala SS. Targeted rapid knee MRI exam using T 2 shuffling. J Magn Reson Imaging 2019; 49:e195-e204. [PMID: 30637847 PMCID: PMC6551292 DOI: 10.1002/jmri.26600] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2018] [Revised: 11/18/2018] [Accepted: 11/19/2018] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND MRI is commonly used to evaluate pediatric musculoskeletal pathologies, but same-day/near-term scheduling and short exams remain challenges. PURPOSE To investigate the feasibility of a targeted rapid pediatric knee MRI exam, with the goal of reducing cost and enabling same-day MRI access. STUDY TYPE A cost effectiveness study done prospectively. SUBJECTS Forty-seven pediatric patients. FIELD STRENGTH/SEQUENCE 3T. The 10-minute protocol was based on T2 Shuffling, a four-dimensional acquisition and reconstruction of images with variable T2 contrast, and a T1 2D fast spin-echo (FSE) sequence. A distributed, compressed sensing-based reconstruction was implemented on a four-node high-performance compute cluster and integrated into the clinical workflow. ASSESSMENT In an Institutional Review Board-approved study with informed consent/assent, we implemented a targeted pediatric knee MRI exam for assessing pediatric knee pain. Pediatric patients were subselected for the exam based on insurance plan and clinical indication. Over a 2-year period, 47 subjects were recruited for the study and 49 MRIs were ordered. Date and time information was recorded for MRI referral, registration, and completion. Image quality was assessed from 0 (nondiagnostic) to 5 (outstanding) by two readers, and consensus was subsequently reached. STATISTICAL TESTS A Wilcoxon rank-sum test assessed the null hypothesis that the targeted exam times compared with conventional knee exam times were unchanged. RESULTS Of the 49 cases, 20 were completed on the same day as exam referral. Median time from registration to exam completion was 18.7 minutes. Median reconstruction time for T2 Shuffling was reduced from 18.9 minutes to 95 seconds using the distributed implementation. Technical fees charged for the targeted exam were one-third that of the routine clinical knee exam. No subject had to return for additional imaging. DATA CONCLUSION The targeted knee MRI exam is feasible and reduces the imaging time, cost, and barrier to same-day MRI access for pediatric patients. LEVEL OF EVIDENCE 2 Technical Efficacy: Stage 6 J. Magn. Reson. Imaging 2019.
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Affiliation(s)
- Jonathan I. Tamir
- Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, USA
| | - Valentina Taviani
- Global Applied Science Laboratory, GE Healthcare, Menlo Park, California, USA
| | - Marcus T. Alley
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Becki Perkins
- Department of Radiology, Lucile Packard Children’s Hospital, Stanford, California, USA
| | - Lori Hart
- Department of Radiology, Lucile Packard Children’s Hospital, Stanford, California, USA
| | - Kendall Obrien
- Department of Radiology, Lucile Packard Children’s Hospital, Stanford, California, USA
| | - Fidaa Wishah
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Jesse K Sandberg
- Department of Radiology, Stanford University, Stanford, California, USA
| | | | - Javier S. Turek
- Brain-Inspired Computing Lab, Intel Labs, Hillsboro, Oregon, USA
| | | | - Michael Lustig
- Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, USA
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103
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Balachandrasekaran A, Mani M, Jacob M. Calibration-Free B0 Correction of EPI Data Using Structured Low Rank Matrix Recovery. IEEE TRANSACTIONS ON MEDICAL IMAGING 2019; 38:979-990. [PMID: 30334785 PMCID: PMC7840148 DOI: 10.1109/tmi.2018.2876423] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
We introduce a structured low rank algorithm for the calibration-free compensation of field inhomogeneity artifacts in echo planar imaging (EPI) MRI data. We acquire the data using two EPI readouts that differ in echo-time. Using time segmentation, we reformulate the field inhomogeneity compensation problem as the recovery of an image time series from highly undersampled Fourier measurements. The temporal profile at each pixel is modeled as a single exponential, which is exploited to fill in the missing entries. We show that the exponential behavior at each pixel, along with the spatial smoothness of the exponential parameters, can be exploited to derive a 3-D annihilation relation in the Fourier domain. This relation translates to a low rank property on a structured multi-fold Toeplitz matrix, whose entries correspond to the measured k-space samples. We introduce a fast two-step algorithm for the completion of the Toeplitz matrix from the available samples. In the first step, we estimate the null space vectors of the Toeplitz matrix using only its fully sampled rows. The null space is then used to estimate the signal subspace, which facilitates the efficient recovery of the time series of images. We finally demonstrate the proposed approach on spherical MR phantom data and human data and show that the artifacts are significantly reduced.
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Affiliation(s)
- Arvind Balachandrasekaran
- Arvind Balachandrasekaran, Mathews Jacob are with the Department of Electrical and Computer Engineering and Merry Mani is with the Department of Radiology, University of Iowa, Iowa City, IA, 52245, USA
| | - Merry Mani
- Arvind Balachandrasekaran, Mathews Jacob are with the Department of Electrical and Computer Engineering and Merry Mani is with the Department of Radiology, University of Iowa, Iowa City, IA, 52245, USA
| | - Mathews Jacob
- Arvind Balachandrasekaran, Mathews Jacob are with the Department of Electrical and Computer Engineering and Merry Mani is with the Department of Radiology, University of Iowa, Iowa City, IA, 52245, USA
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104
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Hamilton JI, Jiang Y, Ma D, Chen Y, Lo WC, Griswold M, Seiberlich N. Simultaneous multislice cardiac magnetic resonance fingerprinting using low rank reconstruction. NMR IN BIOMEDICINE 2019; 32:e4041. [PMID: 30561779 PMCID: PMC7755311 DOI: 10.1002/nbm.4041] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Revised: 10/02/2018] [Accepted: 10/25/2018] [Indexed: 05/02/2023]
Abstract
This study introduces a technique for simultaneous multislice (SMS) cardiac magnetic resonance fingerprinting (cMRF), which improves the slice coverage when quantifying myocardial T1, T2 , and M0 . The single-slice cMRF pulse sequence was modified to use multiband (MB) RF pulses for SMS imaging. Different RF phase schedules were used to excite each slice, similar to POMP or CAIPIRINHA, which imparts tissues with a distinguishable and slice-specific magnetization evolution over time. Because of the high net acceleration factor (R = 48 in plane combined with the slice acceleration), images were first reconstructed with a low rank technique before matching data to a dictionary of signal timecourses generated by a Bloch equation simulation. The proposed method was tested in simulations with a numerical relaxation phantom. Phantom and in vivo cardiac scans of 10 healthy volunteers were also performed at 3 T. With single-slice acquisitions, the mean relaxation times obtained using the low rank cMRF reconstruction agree with reference values. The low rank method improves the precision in T1 and T2 for both single-slice and SMS cMRF, and it enables the acquisition of maps with fewer artifacts when using SMS cMRF at higher MB factors. With this technique, in vivo cardiac maps were acquired from three slices simultaneously during a breathhold lasting 16 heartbeats. SMS cMRF improves the efficiency and slice coverage of myocardial T1 and T2 mapping compared with both single-slice cMRF and conventional cardiac mapping sequences. Thus, this technique is a first step toward whole-heart simultaneous T1 and T2 quantification with cMRF.
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Affiliation(s)
- Jesse I. Hamilton
- Dept. of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA
- Corresponding author at 10900 Euclid Avenue, Wickenden 516, Cleveland, OH, 44106, USA,
| | - Yun Jiang
- Dept. of Radiology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA
| | - Dan Ma
- Dept. of Radiology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA
| | - Yong Chen
- Dept. of Radiology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA
| | - Wei-Ching Lo
- Dept. of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA
| | - Mark Griswold
- Dept. of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA
- Dept. of Radiology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA
| | - Nicole Seiberlich
- Dept. of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA
- Dept. of Radiology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA
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105
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Pfister J, Blaimer M, Kullmann WH, Bartsch AJ, Jakob PM, Breuer FA. Simultaneous T 1 and T 2 measurements using inversion recovery TrueFISP with principle component-based reconstruction, off-resonance correction, and multicomponent analysis. Magn Reson Med 2019; 81:3488-3502. [PMID: 30687949 DOI: 10.1002/mrm.27657] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Revised: 12/14/2018] [Accepted: 12/16/2018] [Indexed: 01/14/2023]
Abstract
PURPOSE To improve the reconstruction quality for quantitative T1 and T2 measurements using the inversion recovery (IR) TrueFISP sequence and to demonstrate the potential for multicomponent analysis. METHODS The iterative reconstruction method takes advantage of the high redundancy in the smooth exponential signals using principle component analysis (PCA). Multicomponent information is preserved and allows voxel-by-voxel computation of relaxation time spectra with an inverse Laplace transform. Off-resonance effects are analytically and numerically investigated and a correction approach is presented. RESULTS Single-shot IR TrueFISP in vivo measurements on healthy volunteers demonstrate the improved reconstruction performance compared to a view sharing (k-space weighted image contrast [KWIC]) reconstruction. Especially, tissue components with short apparent relaxation times T1 * are not filtered out and can be identified in the relaxation time spectra. These components include myelin in the human brain (T1 * ≈ 130 ms) and extra cranial subcutaneous fat. CONCLUSION The PCA-based reconstruction method improves the temporal accuracy and preserves multicomponent information. Spatially resolved relaxation time spectra can be obtained and allow the identification of tissue types with short, apparent relaxation times.
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Affiliation(s)
- Julian Pfister
- Magnetic Resonance and X-ray Imaging Department, Fraunhofer Development Center for X-Ray Technology (EZRT), Würzburg, Germany.,Department of Experimental Physics V, University of Würzburg, Würzburg, Germany.,Institute of Medical Engineering Schweinfurt, University of Applied Sciences Würzburg-Schweinfurt, Schweinfurt, Germany
| | - Martin Blaimer
- Magnetic Resonance and X-ray Imaging Department, Fraunhofer Development Center for X-Ray Technology (EZRT), Würzburg, Germany
| | - Walter H Kullmann
- Institute of Medical Engineering Schweinfurt, University of Applied Sciences Würzburg-Schweinfurt, Schweinfurt, Germany
| | - Andreas J Bartsch
- Department of Neuroradiology, University of Heidelberg, Heidelberg, Germany.,Department of Neuroradiology, University Hospital Würzburg, Würzburg, Germany.,WIN/FMRIB Centre, Department of Clinical Neurology, University of Oxford, Oxford, UK.,Radiologie Bamberg, Bamberg, Germany
| | - Peter M Jakob
- Department of Experimental Physics V, University of Würzburg, Würzburg, Germany
| | - Felix A Breuer
- Magnetic Resonance and X-ray Imaging Department, Fraunhofer Development Center for X-Ray Technology (EZRT), Würzburg, Germany
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106
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Roeloffs V, Rosenzweig S, Holme HCM, Uecker M, Frahm J. Frequency-modulated SSFP with radial sampling and subspace reconstruction: A time-efficient alternative to phase-cycled bSSFP. Magn Reson Med 2018; 81:1566-1579. [PMID: 30357904 DOI: 10.1002/mrm.27505] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 07/05/2018] [Accepted: 08/03/2018] [Indexed: 11/11/2022]
Abstract
PURPOSE A novel subspace-based reconstruction method for frequency-modulated balanced steady-state free precession (fmSSFP) MRI is presented. In this work, suitable data acquisition schemes, subspace sizes, and efficiencies for banding removal are investigated. THEORY AND METHODS By combining a fmSSFP MRI sequence with a 3D stack-of-stars trajectory, scan efficiency is maximized as spectral information is obtained without intermediate preparation phases. A memory-efficient reconstruction routine is implemented by introducing the low-frequency Fourier transform as a subspace which allows for the formulation of a convex reconstruction problem. The removal of banding artifacts is investigated by comparing the proposed acquisition and reconstruction technique to phase-cycled bSSFP MRI. Aliasing properties of different undersampling schemes are analyzed and water/fat separation is demonstrated by reweighting the reconstructed subspace coefficients to generate virtual spectral responses in a post-processing step. RESULTS A simple root-of-sum-of-squares combination of the reconstructed subspace coefficients yields high-SNR images with the characteristic bSSFP contrast but without banding artifacts. Compared to Golden-Angle trajectories, turn-based sampling schemes were superior in minimizing aliasing across reconstructed subspace coefficients. Water/fat separated images of the human knee were obtained by reweighting subspace coefficients. CONCLUSIONS The novel subspace-based fmSSFP MRI technique emerges as a time-efficient alternative to phase-cycled bSFFP. The method does not need intermediate preparation phases, offers high SNR and avoids banding artifacts. Reweighting of the reconstructed subspace coefficients allows for generating virtual spectral responses with applications to water/fat separation.
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Affiliation(s)
- Volkert Roeloffs
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany
| | - Sebastian Rosenzweig
- Institute for Diagnostic and Interventional Radiology, University Medical Center, Göttingen, Germany.,German Centre for Cardiovascular Research (DZHK), Göttingen, Germany
| | - H Christian M Holme
- Institute for Diagnostic and Interventional Radiology, University Medical Center, Göttingen, Germany.,German Centre for Cardiovascular Research (DZHK), Göttingen, Germany
| | - Martin Uecker
- Institute for Diagnostic and Interventional Radiology, University Medical Center, Göttingen, Germany.,German Centre for Cardiovascular Research (DZHK), Göttingen, Germany
| | - Jens Frahm
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany.,German Centre for Cardiovascular Research (DZHK), Göttingen, Germany
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107
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Keerthivasan MB, Mandava S, Johnson K, Avery R, Janardhanan R, Martin DR, Bilgin A, Altbach MI. A multi-band double-inversion radial fast spin-echo technique for T2 cardiovascular magnetic resonance mapping of the heart. J Cardiovasc Magn Reson 2018; 20:49. [PMID: 30025523 PMCID: PMC6052643 DOI: 10.1186/s12968-018-0470-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Accepted: 06/14/2018] [Indexed: 11/15/2022] Open
Abstract
BACKGROUND Double inversion recovery (DIR) fast spin-echo (FSE) cardiovascular magnetic resonance (CMR) sequences are used clinically for black-blood T2-weighted imaging. However, these sequences suffer from slice inefficiency due to the non-selective inversion pulses. We propose a multi-band (MB) encoded DIR radial FSE (MB-DIR-RADFSE) technique to simultaneously excite two slices. This sequence has improved signal-to-noise ratio per unit time compared to a single slice excitation. It is also motion robust and enables the reconstruction of high-resolution black-blood T2-weighted images and T2 maps for the excited slices. METHODS Hadamard encoded MB pulses were used in MB-DIR-RADFSE to simultaneously excite two slices. A principal component based iterative reconstruction was used to jointly reconstruct black-blood T2-weighted images and T2 maps. Phantom and in vivo experiments were performed to evaluate T2 mapping performance and results were compared to a T2-prepared balanced steady state free precession (bSSFP) method. The inter-segment variability of the T2 maps were assessed using data acquired on healthy subjects. A reproducibility study was performed to evaluate reproducibility of the proposed technique. RESULTS Phantom experiments show that the T2 values estimated from MB-DIR-RADFSE are comparable to the spin-echo based reference, while T2-prepared bSSFP over-estimated T2 values. The relative contrast of the black-blood images from the multi-band scheme was comparable to those from a single slice acquisition. The myocardial segment analysis on 8 healthy subjects indicated a significant difference (p-value < 0.01) in the T2 estimates from the apical slice when compared to the mid-ventricular slice. The mean T2 estimate from 12 subjects obtained using T2-prepared bSSFP was significantly higher (p-value = 0.012) compared to MB-DIR-RADFSE, consistent with the phantom results. The Bland-Altman analysis showed excellent reproducibility between the MB-DIR-RADFSE measurements, with a mean T2 difference of 0.12 ms and coefficient of reproducibility of 2.07 in 15 clinical subjects. The utility of this technique is demonstrated in two subjects where the T2 maps show elevated values in regions of pathology. CONCLUSIONS The use of multi-band pulses for excitation improves the slice efficiency of the double inversion fast spin-echo pulse sequence. The use of a radial trajectory and a joint reconstruction framework allows reconstruction of TE images and T2 maps for the excited slices.
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Affiliation(s)
- Mahesh Bharath Keerthivasan
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ USA
- Department of Medical Imaging, University of Arizona, Tucson, AZ USA
| | - Sagar Mandava
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ USA
| | | | - Ryan Avery
- Department of Medical Imaging, University of Arizona, Tucson, AZ USA
| | | | - Diego R. Martin
- Department of Medical Imaging, University of Arizona, Tucson, AZ USA
| | - Ali Bilgin
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ USA
- Department of Biomedical Engineering, University of Arizona, Tucson, AZ USA
| | - Maria I. Altbach
- Department of Medical Imaging, University of Arizona, Tucson, AZ USA
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108
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Mandava S, Keerthivasan MB, Li Z, Martin DR, Altbach MI, Bilgin A. Accelerated MR parameter mapping with a union of local subspaces constraint. Magn Reson Med 2018; 80:2744-2758. [PMID: 30009531 PMCID: PMC10164411 DOI: 10.1002/mrm.27344] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Revised: 04/11/2018] [Accepted: 04/12/2018] [Indexed: 01/17/2023]
Abstract
PURPOSE A new reconstruction method for multi-contrast imaging and parameter mapping based on a union of local subspaces constraint is presented. THEORY Subspace constrained reconstructions use a predetermined subspace to explicitly constrain the relaxation signals. The choice of subspace size ( K ) impacts the approximation error vs noise-amplification tradeoff associated with these methods. A different approach is used in the model consistency constraint (MOCCO) framework to leverage the subspace model to enforce a softer penalty. Our proposed method, MOCCO-LS, augments the MOCCO model with a union of local subspaces (LS) approach. The union of local subspaces model is coupled with spatial support constraints and incorporated into the MOCCO framework to regularize the contrast signals in the scene. METHODS The performance of the MOCCO-LS method was evaluated in vivo on T1 and T2 mapping of the human brain and with Monte-Carlo simulations and compared against MOCCO and the explicit subspace constrained models. RESULTS The results demonstrate a clear improvement in the multi-contrast images and parameter maps. We sweep across the model order space ( K ) to compare the different reconstructions and demonstrate that the reconstructions have different preferential operating points. Experiments on T2 mapping show that the proposed method yields substantial improvements in performance even when operating at very high acceleration rates. CONCLUSIONS The use of a union of local subspace constraints coupled with a sparsity promoting penalty leads to improved reconstruction quality of multi-contrast images and parameter maps.
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Affiliation(s)
- Sagar Mandava
- Department of Electrical and Computer Engineering; University of Arizona; Tucson Arizona
- Department of Medical Imaging; University of Arizona; Tucson Arizona
| | - Mahesh B. Keerthivasan
- Department of Electrical and Computer Engineering; University of Arizona; Tucson Arizona
- Department of Medical Imaging; University of Arizona; Tucson Arizona
| | - Zhitao Li
- Department of Electrical and Computer Engineering; University of Arizona; Tucson Arizona
- Department of Medical Imaging; University of Arizona; Tucson Arizona
| | - Diego R. Martin
- Department of Medical Imaging; University of Arizona; Tucson Arizona
| | - Maria I. Altbach
- Department of Medical Imaging; University of Arizona; Tucson Arizona
- Department of Biomedical Engineering; University of Arizona; Tucson Arizona
| | - Ali Bilgin
- Department of Electrical and Computer Engineering; University of Arizona; Tucson Arizona
- Department of Medical Imaging; University of Arizona; Tucson Arizona
- Department of Biomedical Engineering; University of Arizona; Tucson Arizona
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109
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Gibbons EK, Vasanawala SS, Pauly JM, Kerr AB. Body diffusion-weighted imaging using magnetization prepared single-shot fast spin echo and extended parallel imaging signal averaging. Magn Reson Med 2018; 79:3032-3044. [PMID: 29044721 PMCID: PMC6312718 DOI: 10.1002/mrm.26971] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Revised: 09/25/2017] [Accepted: 09/25/2017] [Indexed: 12/22/2022]
Abstract
PURPOSE This work demonstrates a magnetization prepared diffusion-weighted single-shot fast spin echo (SS-FSE) pulse sequence for the application of body imaging to improve robustness to geometric distortion. This work also proposes a scan averaging technique that is superior to magnitude averaging and is not subject to artifacts due to object phase. THEORY AND METHODS This single-shot sequence is robust against violation of the Carr-Purcell-Meiboom-Gill (CPMG) condition. This is achieved by dephasing the signal after diffusion weighting and tipping the MG component of the signal onto the longitudinal axis while the non-MG component is spoiled. The MG signal component is then excited and captured using a traditional SS-FSE sequence, although the echo needs to be recalled prior to each echo. Extended Parallel Imaging (ExtPI) averaging is used where coil sensitivities from the multiple acquisitions are concatenated into one large parallel imaging (PI) problem. The size of the PI problem is reduced by SVD-based coil compression which also provides background noise suppression. This sequence and reconstruction are evaluated in simulation, phantom scans, and in vivo abdominal clinical cases. RESULTS Simulations show that the sequence generates a stable signal throughout the echo train which leads to good image quality. This sequence is inherently low-SNR, but much of the SNR can be regained through scan averaging and the proposed ExtPI reconstruction. In vivo results show that the proposed method is able to provide diffusion encoded images while mitigating geometric distortion artifacts compared to EPI. CONCLUSION This work presents a diffusion-prepared SS-FSE sequence that is robust against the violation of the CPMG condition while providing diffusion contrast in clinical cases. Magn Reson Med 79:3032-3044, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Eric K Gibbons
- Department of Bioengineering, Stanford University, Stanford, California, USA
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | | | - John M Pauly
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - Adam B Kerr
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA
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110
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Abstract
Quantitative cardiovascular magnetic resonance (CMR) imaging can be used to characterize fibrosis, oedema, ischaemia, inflammation and other disease conditions. However, the need to reduce artefacts arising from body motion through a combination of electrocardiography (ECG) control, respiration control, and contrast-weighting selection makes CMR exams lengthy. Here, we show that physiological motions and other dynamic processes can be conceptualized as multiple time dimensions that can be resolved via low-rank tensor imaging, allowing for motion-resolved quantitative imaging with up to four time dimensions. This continuous-acquisition approach, which we name cardiovascular MR multitasking, captures — rather than avoids — motion, relaxation and other dynamics to efficiently perform quantitative CMR without the use of ECG triggering or breath holds. We demonstrate that CMR multitasking allows for T1 mapping, T1-T2 mapping and time-resolved T1 mapping of myocardial perfusion without ECG information and/or in free-breathing conditions. CMR multitasking may provide a foundation for the development of setup-free CMR imaging for the quantitative evaluation of cardiovascular health.
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111
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Gordon JW, Hansen RB, Shin PJ, Feng Y, Vigneron DB, Larson PEZ. 3D hyperpolarized C-13 EPI with calibrationless parallel imaging. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2018; 289:92-99. [PMID: 29476930 PMCID: PMC5856653 DOI: 10.1016/j.jmr.2018.02.011] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Revised: 02/11/2018] [Accepted: 02/12/2018] [Indexed: 05/08/2023]
Abstract
With the translation of metabolic MRI with hyperpolarized 13C agents into the clinic, imaging approaches will require large volumetric FOVs to support clinical applications. Parallel imaging techniques will be crucial to increasing volumetric scan coverage while minimizing RF requirements and temporal resolution. Calibrationless parallel imaging approaches are well-suited for this application because they eliminate the need to acquire coil profile maps or auto-calibration data. In this work, we explored the utility of a calibrationless parallel imaging method (SAKE) and corresponding sampling strategies to accelerate and undersample hyperpolarized 13C data using 3D blipped EPI acquisitions and multichannel receive coils, and demonstrated its application in a human study of [1-13C]pyruvate metabolism.
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Affiliation(s)
- Jeremy W Gordon
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, United States.
| | - Rie B Hansen
- Department of Electrical Engineering, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Peter J Shin
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, United States
| | - Yesu Feng
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, United States
| | - Daniel B Vigneron
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, United States
| | - Peder E Z Larson
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, United States
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112
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Zhang Z, Lustig M, Frydman L. Phase-encoded xSPEN: A novel high-resolution volumetric alternative to RARE MRI. Magn Reson Med 2018; 80:1492-1506. [DOI: 10.1002/mrm.27143] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Revised: 01/28/2018] [Accepted: 01/29/2018] [Indexed: 02/01/2023]
Affiliation(s)
- Zhiyong Zhang
- Department of Chemical and Biological Physics; Weizmann Institute of Science; Rehovot Israel
| | - Michael Lustig
- Department of Electrical Engineering and Computer Sciences; University of California; Berkeley California
| | - Lucio Frydman
- Department of Chemical and Biological Physics; Weizmann Institute of Science; Rehovot Israel
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113
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Poser BA, Setsompop K. Pulse sequences and parallel imaging for high spatiotemporal resolution MRI at ultra-high field. Neuroimage 2018; 168:101-118. [PMID: 28392492 PMCID: PMC5630499 DOI: 10.1016/j.neuroimage.2017.04.006] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2016] [Revised: 04/01/2017] [Accepted: 04/03/2017] [Indexed: 12/18/2022] Open
Abstract
The SNR and CNR benefits of ultra-high field (UHF) have helped push the envelope of achievable spatial resolution in MRI. For applications based on susceptibility contrast where there is a large CNR gain, high quality sub-millimeter resolution imaging is now being routinely performed, particularly in fMRI and phase imaging/QSM. This has enabled the study of structure and function of very fine-scale structures in the brain. UHF has also helped push the spatial resolution of many other MRI applications as will be outlined in this review. However, this push in resolution comes at a cost of a large encoding burden leading to very lengthy scans. Developments in parallel imaging with controlled aliasing and the move away from 2D slice-by-slice imaging to much more SNR-efficient simultaneous multi-slice (SMS) and 3D acquisitions have helped address this issue. In particular, these developments have revolutionized the efficiency of UHF MRI to enable high spatiotemporal resolution imaging at an order of magnitude faster acquisition. In addition to describing the main approaches to these techniques, this review will also outline important key practical considerations in using these methods in practice. Furthermore, new RF pulse design to tackle the B1+ and SAR issues of UHF and the increased SAR and power requirement of SMS RF pulses will also be touched upon. Finally, an outlook into new developments of smart encoding in more dimensions, particularly through using better temporal/across-contrast encoding and reconstruction will be described. Just as controlled aliasing fully exploits spatial encoding in parallel imaging to provide large multiplicative gains in accelerations, the complimentary use of these new approaches in temporal and across-contrast encoding are expected to provide exciting opportunities for further large gains in efficiency to further push the spatiotemporal resolution of MRI.
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Affiliation(s)
- Benedikt A Poser
- Department of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, Netherlands.
| | - Kawin Setsompop
- Department of Radiology, Harvard Medical School, Boston, MA, USA; Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA
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114
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Zhao L, Chang CD, Alsop DC. Controlling T 2 blurring in 3D RARE arterial spin labeling acquisition through optimal combination of variable flip angles and k-space filtering. Magn Reson Med 2018; 80:1391-1401. [PMID: 29427325 DOI: 10.1002/mrm.27118] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Revised: 01/12/2018] [Accepted: 01/14/2018] [Indexed: 11/06/2022]
Abstract
PURPOSE To improve the SNR efficiency and reduce the T2 blurring of 3D rapid acquisition with relaxation enhancement stack-of-spiral arterial spin labeling imaging by using variable refocusing flip angles and k-space filtering. METHODS An algorithm for determining the optimal combination of variable flip angles and filtering correction is proposed. The flip angles are designed using extended phase graph physical simulations in an analytical and global optimization framework, with an optional constraint on deposited power. Optimal designs for correcting to Hann and Fermi window functions were compared with conventional constant amplitude or variable flip angle only designs on 6 volunteers. RESULTS With the Fermi window correction, the proposed optimal designs provided 39.8 and 27.3% higher SNR (P < .05) than conventional constant amplitude and variable flip angle designs. Even when power deposition was limited to 50% of the constant amplitude design, the proposed method outperformed the SNR (P < .05) of these 2 conventional approaches by 32.5 and 20.7%. The sharpness and the contrast between gray and white matter were improved with the k-space filtering correction for all of the flip angle designs. The improvements were moderate for the Hann window correction. CONCLUSION This work demonstrates that variable flip angles can be derived as the output of an optimization problem. The combined design of variable flip angle and k-space filtering provided superior SNR to designs primarily emphasizing either approach singly.
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Affiliation(s)
- Li Zhao
- Department of Radiology, Beth Israel Deaconess Medical Center & Harvard Medical School, Boston, Massachusetts, USA
| | - Ching-Di Chang
- Department of Radiology, Beth Israel Deaconess Medical Center & Harvard Medical School, Boston, Massachusetts, USA.,Department of Radiology, Kaohsiung Chang Gung Memorial Hospital & Chang Gung University College of Medicine, Kaohsiung city, Taiwan
| | - David C Alsop
- Department of Radiology, Beth Israel Deaconess Medical Center & Harvard Medical School, Boston, Massachusetts, USA
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115
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Levine E, Hargreaves B. On-the-Fly Adaptive ${k}$ -Space Sampling for Linear MRI Reconstruction Using Moment-Based Spectral Analysis. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:557-567. [PMID: 29408784 PMCID: PMC5840375 DOI: 10.1109/tmi.2017.2766131] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
In high-dimensional magnetic resonance imaging applications, time-consuming, sequential acquisition of data samples in the spatial frequency domain ( -space) can often be accelerated by accounting for dependencies in linear reconstruction, at the cost of noise amplification that depends on the sampling pattern. Common examples are support-constrained, parallel, and dynamic MRI, and -space sampling strategies are primarily driven by image-domain metrics that are expensive to compute for arbitrary sampling patterns. It remains challenging to provide systematic and computationally efficient automatic designs of arbitrary multidimensional Cartesian sampling patterns that mitigate noise amplification, given the subspace to which the object is confined. To address this problem, this paper introduces a theoretical framework that describes local geometric properties of the sampling pattern and relates them to the spread in the eigenvalues of the information matrix described by its first two spectral moments. This new criterion is then used for very efficient optimization of complex multidimensional sampling patterns that does not require reconstructing images or explicitly mapping noise amplification. Experiments with in vivo data show strong agreement between this criterion and traditional, comprehensive image-domain- and -space-based metrics, indicating the potential of the approach for computationally efficient (on-the-fly), automatic, and adaptive design of sampling patterns.
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116
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Zimmermann M, Abbas Z, Dzieciol K, Shah NJ. Accelerated Parameter Mapping of Multiple-Echo Gradient-Echo Data Using Model-Based Iterative Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:626-637. [PMID: 29408790 DOI: 10.1109/tmi.2017.2771504] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
A new reconstruction method, coined MIRAGE, is presented for accurate, fast, and robust parameter mapping of multiple-echo gradient-echo (MEGE) imaging, the basis sequence of novel quantitative magnetic resonance imaging techniques such as water content and susceptibility mapping. Assuming that the temporal signal can be modeled as a sum of damped complex exponentials, MIRAGE performs model-based reconstruction of undersampled data by minimizing the rank of local Hankel matrices. It further incorporates multi-channel information and spatial prior knowledge. Finally, the parameter maps are estimated using nonlinear regression. Simulations and retrospective undersampling of phantom and in vivo data affirm robustness, e.g., to strong inhomogeneity of the static magnetic field and partial volume effects. MIRAGE is compared with a state-of-the-art compressed sensing method, -ESPIRiT. Parameter maps estimated from reconstructed data using MIRAGE are shown to be accurate, with the mean absolute error reduced by up to 50% for in vivo results. The proposed method has the potential to improve the diagnostic utility of quantitative imaging techniques that rely on MEGE data.
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117
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Cao P, Zhu X, Tang S, Leynes A, Jakary A, Larson PEZ. Shuffled magnetization-prepared multicontrast rapid gradient-echo imaging. Magn Reson Med 2017; 79:62-70. [PMID: 29080236 DOI: 10.1002/mrm.26986] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 10/04/2017] [Accepted: 10/05/2017] [Indexed: 01/12/2023]
Abstract
PURPOSE To develop a novel acquisition and reconstruction method for magnetization-prepared 3-dimensional multicontrast rapid gradient-echo imaging, using Hankel matrix completion in combination with compressed sensing and parallel imaging. METHODS A random k-space shuffling strategy was implemented in simulation and in vivo human experiments at 7 T for 3-dimensional inversion recovery, T2 /diffusion preparation, and magnetization transfer imaging. We combined compressed sensing, based on total variation and spatial-temporal low-rank regularizations, and parallel imaging with pixel-wise Hankel matrix completion, allowing the reconstruction of tens of multicontrast 3-dimensional images from 3- or 6-min scans. RESULTS The simulation result showed that the proposed method can reconstruct signal-recovery curves in each voxel and was robust for typical in vivo signal-to-noise ratio with 16-times acceleration. In vivo studies achieved 4 to 24 times accelerations for inversion recovery, T2 /diffusion preparation, and magnetization transfer imaging. Furthermore, the contrast was improved by resolving pixel-wise signal-recovery curves after magnetization preparation. CONCLUSIONS The proposed method can improve acquisition efficiencies for magnetization-prepared MRI and tens of multicontrast 3-dimensional images could be recovered from a single scan. Furthermore, it was robust against noise, applicable for recovering multi-exponential signals, and did not require any previous knowledge of model parameters. Magn Reson Med 79:62-70, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Peng Cao
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, USA
| | - Xucheng Zhu
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, USA
| | - Shuyu Tang
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, USA
| | - Andrew Leynes
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, USA
| | - Angela Jakary
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, USA
| | - Peder E Z Larson
- Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, USA
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119
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Wang X, Roeloffs V, Klosowski J, Tan Z, Voit D, Uecker M, Frahm J. Model-based T 1 mapping with sparsity constraints using single-shot inversion-recovery radial FLASH. Magn Reson Med 2017; 79:730-740. [PMID: 28603934 DOI: 10.1002/mrm.26726] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Revised: 03/16/2017] [Accepted: 03/28/2017] [Indexed: 12/13/2022]
Abstract
PURPOSE To develop a model-based reconstruction technique for single-shot T1 mapping with high spatial resolution, accuracy, and precision using an inversion-recovery (IR) fast low-angle shot (FLASH) acquisition with radial encoding. METHODS The proposed model-based reconstruction jointly estimates all model parameters, that is, the equilibrium magnetization, steady-state magnetization, 1/ T1*, and all coil sensitivities from the data of a single-shot IR FLASH acquisition with a small golden-angle radial trajectory. Joint sparsity constraints on the parameter maps are exploited to improve the performance of the iteratively regularized Gauss-Newton method chosen for solving the nonlinear inverse problem. Validations include both a numerical and experimental T1 phantom, as well as in vivo studies of the human brain and liver at 3 T. RESULTS In comparison to previous reconstruction methods for single-shot T1 mapping, which are based on real-time MRI with pixel-wise fitting and a model-based approach with a predetermination of coil sensitivities, the proposed method presents with improved robustness against phase errors and numerical precision in both phantom and in vivo studies. CONCLUSION The comprehensive model-based reconstruction with L1 regularization offers rapid and robust T1 mapping with high accuracy and precision. The method warrants accelerated computing and online implementation for extended clinical trials. Magn Reson Med 79:730-740, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Xiaoqing Wang
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany
| | - Volkert Roeloffs
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany
| | - Jakob Klosowski
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany
| | - Zhengguo Tan
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany
| | - Dirk Voit
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany
| | - Martin Uecker
- Department of Diagnostic and Interventional Radiology, University Medical Center, Göttingen, Germany.,DZHK (German Centre for Cardiovascular Research), partner site Göttingen, Germany
| | - Jens Frahm
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany.,DZHK (German Centre for Cardiovascular Research), partner site Göttingen, Germany
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120
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Saranathan M, Worters PW, Rettmann DW, Winegar B, Becker J. Physics for clinicians: Fluid-attenuated inversion recovery (FLAIR) and double inversion recovery (DIR) Imaging. J Magn Reson Imaging 2017; 46:1590-1600. [DOI: 10.1002/jmri.25737] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2017] [Accepted: 03/30/2017] [Indexed: 01/05/2023] Open
Affiliation(s)
| | | | | | - Blair Winegar
- Department of Medical Imaging; University of Arizona; Tucson Arizona USA
| | - Jennifer Becker
- Department of Medical Imaging; University of Arizona; Tucson Arizona USA
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121
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Zhao B, Setsompop K, Adalsteinsson E, Gagoski B, Ye H, Ma D, Jiang Y, Ellen Grant P, Griswold MA, Wald LL. Improved magnetic resonance fingerprinting reconstruction with low-rank and subspace modeling. Magn Reson Med 2017; 79:933-942. [PMID: 28411394 DOI: 10.1002/mrm.26701] [Citation(s) in RCA: 101] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2016] [Revised: 03/14/2017] [Accepted: 03/14/2017] [Indexed: 12/11/2022]
Abstract
PURPOSE This article introduces a constrained imaging method based on low-rank and subspace modeling to improve the accuracy and speed of MR fingerprinting (MRF). THEORY AND METHODS A new model-based imaging method is developed for MRF to reconstruct high-quality time-series images and accurate tissue parameter maps (e.g., T1 , T2 , and spin density maps). Specifically, the proposed method exploits low-rank approximations of MRF time-series images, and further enforces temporal subspace constraints to capture magnetization dynamics. This allows the time-series image reconstruction problem to be formulated as a simple linear least-squares problem, which enables efficient computation. After image reconstruction, tissue parameter maps are estimated via dictionary-based pattern matching, as in the conventional approach. RESULTS The effectiveness of the proposed method was evaluated with in vivo experiments. Compared with the conventional MRF reconstruction, the proposed method reconstructs time-series images with significantly reduced aliasing artifacts and noise contamination. Although the conventional approach exhibits some robustness to these corruptions, the improved time-series image reconstruction in turn provides more accurate tissue parameter maps. The improvement is pronounced especially when the acquisition time becomes short. CONCLUSIONS The proposed method significantly improves the accuracy of MRF, and also reduces data acquisition time. Magn Reson Med 79:933-942, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Bo Zhao
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, Massachusetts, USA.,Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA
| | - Kawin Setsompop
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, Massachusetts, USA.,Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA.,Harvard-MIT Division of Health Sciences and Technology, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Elfar Adalsteinsson
- Harvard-MIT Division of Health Sciences and Technology, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.,Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Borjan Gagoski
- Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA.,Fetal-Neonatal Neuroimaging and Developmental Science Center, Boston Children's Hospital, Boston, Massachusetts, USA
| | - Huihui Ye
- Department of Optical Engineering, Zhejiang University, Hangzhou, China
| | - Dan Ma
- Department of Radiology, Case Western Reserve University and University Hospitals of Cleveland, Cleveland, Ohio, USA
| | - Yun Jiang
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - P Ellen Grant
- Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA.,Fetal-Neonatal Neuroimaging and Developmental Science Center, Boston Children's Hospital, Boston, Massachusetts, USA
| | - Mark A Griswold
- Department of Radiology, Case Western Reserve University and University Hospitals of Cleveland, Cleveland, Ohio, USA.,Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - Lawrence L Wald
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, Massachusetts, USA.,Department of Radiology, Harvard Medical School, Boston, Massachusetts, USA.,Harvard-MIT Division of Health Sciences and Technology, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
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Bao S, Tamir JI, Young JL, Tariq U, Uecker M, Lai P, Chen W, Lustig M, Vasanawala SS. Fast comprehensive single-sequence four-dimensional pediatric knee MRI with T 2 shuffling. J Magn Reson Imaging 2016; 45:1700-1711. [PMID: 27726251 DOI: 10.1002/jmri.25508] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Accepted: 09/19/2016] [Indexed: 12/22/2022] Open
Abstract
PURPOSE To develop and clinically evaluate a pediatric knee magnetic resonance imaging (MRI) technique based on volumetric fast spin-echo (3DFSE) and compare its diagnostic performance, image quality, and imaging time to that of a conventional 2D protocol. MATERIALS AND METHODS A 3DFSE sequence was modified and combined with a compressed sensing-based reconstruction resolving multiple image contrasts, a technique termed T2 Shuffling (T2 Sh). With Institutional Review Board (IRB) approval, 28 consecutive children referred for 3T knee MRI prospectively underwent a standard clinical knee protocol followed by T2 Sh. T2 Sh performance was assessed by two readers blinded to diagnostic reports. Interpretive discrepancies were resolved by medical record chart review and consensus between the readers and an orthopedic surgeon. Image quality was evaluated by rating anatomic delineation, with 95% confidence interval. A Wilcoxon rank-sum test assessed the null hypothesis that T2 Sh structure delineation compared to conventional 2D is unchanged. Intraclass correlation coefficients were calculated for interobserver agreement. Imaging time of the conventional protocol and T2 Sh was compared. RESULTS There was 81% and 87% concordance between T2 Sh reports and diagnostic reports, respectively, for each reader. Upon consensus review, T2 Sh had 93% sensitivity and 100% specificity compared to clinical reports for detection of clinically relevant findings. The 95% confidence interval of diagnostic or better rating was 95-100%, with 34-80% interobserver agreement. There was no significant difference in structure delineation between T2 Sh and 2D, except for the retinaculum (P < 0.05), where 2D was preferred. Typical imaging time for T2 Sh and the conventional exam was 7 and 13 minutes, respectively. CONCLUSION A single-sequence pediatric knee exam is feasible with T2 Sh, providing multiplanar, reformattable 4D images. LEVEL OF EVIDENCE 2 J. MAGN. RESON. IMAGING 2017;45:1700-1711.
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Affiliation(s)
- Shanshan Bao
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Jonathan I Tamir
- Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, USA
| | - Jeffrey L Young
- Department of Orthopaedic Surgery, Stanford University, Stanford, California, USA
| | - Umar Tariq
- Department of Radiology, Geisinger Health System, Danville, Pennsylvania, USA
| | - Martin Uecker
- Diagnostic and Interventional Radiology, University Medical Center, Goettingen, Germany.,German Center for Cardiovascular Research (DZHK), Goettingen, Germany
| | - Peng Lai
- Global Applied Science Laboratory, GE Healthcare, Menlo Park, California, USA
| | - Weitian Chen
- Global Applied Science Laboratory, GE Healthcare, Menlo Park, California, USA
| | - Michael Lustig
- Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, USA
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123
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Zhang L, Athavale P, Pop M, Wright GA. Multicontrast reconstruction using compressed sensing with low rank and spatially varying edge-preserving constraints for high-resolution MR characterization of myocardial infarction. Magn Reson Med 2016; 78:598-610. [PMID: 27604855 DOI: 10.1002/mrm.26402] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Revised: 07/19/2016] [Accepted: 08/08/2016] [Indexed: 12/22/2022]
Abstract
PURPOSE To enable robust reconstruction for highly accelerated three-dimensional multicontrast late enhancement imaging to provide improved MR characterization of myocardial infarction with isotropic high spatial resolution. THEORY AND METHODS A new method using compressed sensing with low rank and spatially varying edge-preserving constraints (CS-LASER) is proposed to improve the reconstruction of fine image details from highly undersampled data. CS-LASER leverages the low rank feature of the multicontrast volume series in MR relaxation and integrates spatially varying edge preservation into the explicit low rank constrained compressed sensing framework using weighted total variation. With an orthogonal temporal basis pre-estimated, a multiscale iterative reconstruction framework is proposed to enable the practice of CS-LASER with spatially varying weights of appropriate accuracy. RESULTS In in vivo pig studies with both retrospective and prospective undersamplings, CS-LASER preserved fine image details better and presented tissue characteristics with a higher degree of consistency with histopathology, particularly in the peri-infarct region, than an alternative technique for different acceleration rates. An isotropic resolution of 1.5 mm was achieved in vivo within a single breath-hold using the proposed techniques. CONCLUSION Accelerated three-dimensional multicontrast late enhancement with CS-LASER can achieve improved MR characterization of myocardial infarction with high spatial resolution. Magn Reson Med 78:598-610, 2017. © 2016 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Li Zhang
- Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.,Schulich Heart Research Program and Physical Sciences Platform, Sunnybrook Research Institute, Toronto, Ontario, Canada
| | - Prashant Athavale
- Department of Applied Mathematics and Statistics, Johns Hopkins University, Baltimore, Maryland, USA
| | - Mihaela Pop
- Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.,Schulich Heart Research Program and Physical Sciences Platform, Sunnybrook Research Institute, Toronto, Ontario, Canada
| | - Graham A Wright
- Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.,Schulich Heart Research Program and Physical Sciences Platform, Sunnybrook Research Institute, Toronto, Ontario, Canada
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