101
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Li WJ, McKenzie EHC, Liu JK(J, Bhat DJ, Dai DQ, Camporesi E, Tian Q, Maharachchikumbura SSN, Luo ZL, Shang QJ, Zhang JF, Tangthirasunun N, Karunarathna SC, Xu JC, Hyde KD. Taxonomy and phylogeny of hyaline-spored coelomycetes. FUNGAL DIVERS 2020. [DOI: 10.1007/s13225-020-00440-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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102
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Hyde KD, Dong Y, Phookamsak R, Jeewon R, Bhat DJ, Jones EBG, Liu NG, Abeywickrama PD, Mapook A, Wei D, Perera RH, Manawasinghe IS, Pem D, Bundhun D, Karunarathna A, Ekanayaka AH, Bao DF, Li J, Samarakoon MC, Chaiwan N, Lin CG, Phutthacharoen K, Zhang SN, Senanayake IC, Goonasekara ID, Thambugala KM, Phukhamsakda C, Tennakoon DS, Jiang HB, Yang J, Zeng M, Huanraluek N, Liu JK(J, Wijesinghe SN, Tian Q, Tibpromma S, Brahmanage RS, Boonmee S, Huang SK, Thiyagaraja V, Lu YZ, Jayawardena RS, Dong W, Yang EF, Singh SK, Singh SM, Rana S, Lad SS, Anand G, Devadatha B, Niranjan M, Sarma VV, Liimatainen K, Aguirre-Hudson B, Niskanen T, Overall A, Alvarenga RLM, Gibertoni TB, Pfliegler WP, Horváth E, Imre A, Alves AL, da Silva Santos AC, Tiago PV, Bulgakov TS, Wanasinghe DN, Bahkali AH, Doilom M, Elgorban AM, Maharachchikumbura SSN, Rajeshkumar KC, Haelewaters D, Mortimer PE, Zhao Q, Lumyong S, Xu J, Sheng J. Fungal diversity notes 1151–1276: taxonomic and phylogenetic contributions on genera and species of fungal taxa. FUNGAL DIVERS 2020. [DOI: 10.1007/s13225-020-00439-5] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Abstract
Fungal diversity notes is one of the important journal series of fungal taxonomy that provide detailed descriptions and illustrations of new fungal taxa, as well as providing new information of fungal taxa worldwide. This article is the 11th contribution to the fungal diversity notes series, in which 126 taxa distributed in two phyla, six classes, 24 orders and 55 families are described and illustrated. Taxa in this study were mainly collected from Italy by Erio Camporesi and also collected from China, India and Thailand, as well as in some other European, North American and South American countries. Taxa described in the present study include two new families, 12 new genera, 82 new species, five new combinations and 25 new records on new hosts and new geographical distributions as well as sexual-asexual reports. The two new families are Eriomycetaceae (Dothideomycetes, family incertae sedis) and Fasciatisporaceae (Xylariales, Sordariomycetes). The twelve new genera comprise Bhagirathimyces (Phaeosphaeriaceae), Camporesiomyces (Tubeufiaceae), Eriocamporesia (Cryphonectriaceae), Eriomyces (Eriomycetaceae), Neomonodictys (Pleurotheciaceae), Paraloratospora (Phaeosphaeriaceae), Paramonodictys (Parabambusicolaceae), Pseudoconlarium (Diaporthomycetidae, genus incertae sedis), Pseudomurilentithecium (Lentitheciaceae), Setoapiospora (Muyocopronaceae), Srinivasanomyces (Vibrisseaceae) and Xenoanthostomella (Xylariales, genera incertae sedis). The 82 new species comprise Acremonium chiangraiense, Adustochaete nivea, Angustimassarina camporesii, Bhagirathimyces himalayensis, Brunneoclavispora camporesii, Camarosporidiella camporesii, Camporesiomyces mali, Camposporium appendiculatum, Camposporium multiseptatum, Camposporium septatum, Canalisporium aquaticium, Clonostachys eriocamporesiana, Clonostachys eriocamporesii, Colletotrichum hederiicola, Coniochaeta vineae, Conioscypha verrucosa, Cortinarius ainsworthii, Cortinarius aurae, Cortinarius britannicus, Cortinarius heatherae, Cortinarius scoticus, Cortinarius subsaniosus, Cytospora fusispora, Cytospora rosigena, Diaporthe camporesii, Diaporthe nigra, Diatrypella yunnanensis, Dictyosporium muriformis, Didymella camporesii, Diutina bernali, Diutina sipiczkii, Eriocamporesia aurantia, Eriomyces heveae, Ernakulamia tanakae, Falciformispora uttaraditensis, Fasciatispora cocoes, Foliophoma camporesii, Fuscostagonospora camporesii, Helvella subtinta, Kalmusia erioi, Keissleriella camporesiana, Keissleriella camporesii, Lanspora cylindrospora, Loratospora arezzoensis, Mariannaea atlantica, Melanographium phoenicis, Montagnula camporesii, Neodidymelliopsis camporesii, Neokalmusia kunmingensis, Neoleptosporella camporesiana, Neomonodictys muriformis, Neomyrmecridium guizhouense, Neosetophoma camporesii, Paraloratospora camporesii, Paramonodictys solitarius, Periconia palmicola, Plenodomus triseptatus, Pseudocamarosporium camporesii, Pseudocercospora maetaengensis, Pseudochaetosphaeronema kunmingense, Pseudoconlarium punctiforme, Pseudodactylaria camporesiana, Pseudomurilentithecium camporesii, Pseudotetraploa rajmachiensis, Pseudotruncatella camporesii, Rhexocercosporidium senecionis, Rhytidhysteron camporesii, Rhytidhysteron erioi, Septoriella camporesii, Setoapiospora thailandica, Srinivasanomyces kangrensis, Tetraploa dwibahubeeja, Tetraploa pseudoaristata, Tetraploa thrayabahubeeja, Torula camporesii, Tremateia camporesii, Tremateia lamiacearum, Uzbekistanica pruni, Verruconis mangrovei, Wilcoxina verruculosa, Xenoanthostomella chromolaenae and Xenodidymella camporesii. The five new combinations are Camporesiomyces patagoniensis, Camporesiomyces vaccinia, Camposporium lycopodiellae, Paraloratospora gahniae and Rhexocercosporidium microsporum. The 22 new records on host and geographical distribution comprise Arthrinium marii, Ascochyta medicaginicola, Ascochyta pisi, Astrocystis bambusicola, Camposporium pellucidum, Dendryphiella phitsanulokensis, Diaporthe foeniculina, Didymella macrostoma, Diplodia mutila, Diplodia seriata, Heterosphaeria patella, Hysterobrevium constrictum, Neodidymelliopsis ranunculi, Neovaginatispora fuckelii, Nothophoma quercina, Occultibambusa bambusae, Phaeosphaeria chinensis, Pseudopestalotiopsis theae, Pyxine berteriana, Tetraploa sasicola, Torula gaodangensis and Wojnowiciella dactylidis. In addition, the sexual morphs of Dissoconium eucalypti and Phaeosphaeriopsis pseudoagavacearum are reported from Laurus nobilis and Yucca gloriosa in Italy, respectively. The holomorph of Diaporthe cynaroidis is also reported for the first time.
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103
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Hanafy RA, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Dagar SS, Griffith GW, Elshahed MS, Youssef NH. Seven new Neocallimastigomycota genera from wild, zoo-housed, and domesticated herbivores greatly expand the taxonomic diversity of the phylum. Mycologia 2020; 112:1212-1239. [PMID: 32057282 DOI: 10.1080/00275514.2019.1696619] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We isolated and characterized 65 anaerobic gut fungal (AGF; Neocallimastigomycota) strains from fecal samples of five wild (W, axis deer, white-tailed deer, Boer goat, mouflon, and Nilgiri tahr), one zoo-housed (Z, zebra), and three domesticated (D, horse, sheep, and goat) herbivores in the US states of Texas (TX) and Oklahoma (OK), Wales (WA), and the Indian states of Kerala (KE) and Haryana (HA). Phylogenetic assessment using the D1-D2 regions of the large subunit (28S) rDNA and internal transcribed spacer 1 (ITS1) identified seven monophyletic clades that are distinct from all currently recognized AGF genera. All strains displayed monocentric thalli and produced exclusively or predominantly monoflagellate zoospores, with the exception of axis deer strains, which produced polyflagellate zoospores. Analysis of amplicon-based AGF diversity surveys indicated that zebra and horse strains are representatives of uncultured AL1 group, whereas domesticated goat and sheep strains are representatives of uncultured AL5 group, previously encountered in fecal and rumen samples of multiple herbivores. The other five lineages, all of which were isolated from wild herbivores, have not been previously encountered in such surveys. Our results significantly expand the genus-level diversity within the Neocallimastigomycota and strongly suggest that wild herbivores represent a yet-untapped reservoir of AGF diversity. We propose seven novel genera and eight novel Neocallimastigomycota species to comprise these strains, for which we propose the names Agriosomyces longus (mouflon and wild Boer goat), Aklioshbomyces papillarum (white-tailed deer), Capellomyces foraminis (wild Boar goat), and C. elongatus (domesticated goat), Ghazallomyces constrictus (axis deer), Joblinomyces apicalis (domesticated goat and sheep), Khoyollomyces ramosus (zebra-horse), and Tahromyces munnarensis (Nilgiri tahr).
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Affiliation(s)
- Radwa A Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University , Stillwater, Oklahoma, 74074
| | | | | | - Tony M Callaghan
- Institute of Biological, Environmental, and Rural Sciences (IBERS), Aberystwyth University , Aberystwyth, Wales, UK
| | - Sumit S Dagar
- Bioenergy Group, Agharkar Research Institute, Pune, India
| | - Gareth W Griffith
- Institute of Biological, Environmental, and Rural Sciences (IBERS), Aberystwyth University , Aberystwyth, Wales, UK
| | - Mostafa S Elshahed
- Department of Microbiology and Molecular Genetics, Oklahoma State University , Stillwater, Oklahoma, 74074
| | - Noha H Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University , Stillwater, Oklahoma, 74074
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104
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Su CJ, Hsieh SY, Chiang MWL, Pang KL. Salinity, pH and temperature growth ranges of Halophytophthora isolates suggest their physiological adaptations to mangrove environments. Mycology 2020; 11:256-262. [PMID: 33062386 PMCID: PMC7534344 DOI: 10.1080/21501203.2020.1714768] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
Species of Halophytophthora are early colonisers of fallen mangrove leaves in the tropics but recently found commonly in temperate areas. In mangrove habitats, temperature and salinity change rapidly daily (high/low tide) and seasonally (summer/winter, rainy/dry seasons). Mangrove organisms have to develop adaptive strategies to thrive in such a physiologically challenging environment. In this study, growth of three isolates of Halophytophthora avicenniae and two isolates of H. batemanensis was tested under combined effects of 3 temperatures (15°C, 25°C, 37°C), 3 pHs (6, 7, 8) and 4 salinities (4 ‰, 8 ‰, 16 ‰, 32 ‰). No/little growth was observed at 37°C and growth saturation occurred earlier at 25°C than at 15°C. The log phase of growth was steeper at pH 6 than pH 7 and 8. Temperature and pH were found to exert a greater effect on growth than salinity. Generally, a reduction of growth rate was observed at pH 8 and 15°C. Increase in salinity caused a slight decrease in growth, most noticeable at 32 ‰. The wide growth ranges of temperature, salinity and pH of Halophytophthora isolates suggest that they are well adapted to the physical and chemical conditions of mangrove habitats.
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Affiliation(s)
- Chun-Jui Su
- Institute of Marine Biology and Centre of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Sung-Yuan Hsieh
- Bioresource Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, Taiwan
| | | | - Ka-Lai Pang
- Institute of Marine Biology and Centre of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
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105
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Devadatha B, Calabon MS, Abeywickrama PD, Hyde KD, Jones EBG. Molecular data reveals a new holomorphic marine fungus, Halobyssothecium estuariae, and the asexual morph of Keissleriella phragmiticola. Mycology 2019; 11:167-183. [PMID: 33062380 PMCID: PMC7534217 DOI: 10.1080/21501203.2019.1700025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
This study introduces a novel holomorphic marine fungal species, Halobyssothecium estuariae (Lentitheciaceae, Pleosporales), from dead Phragmites communis. The new species has semi-immersed, subglobose or ellipsoidal, papillate, conical ascomata, clavate to subcylindrical, short pedicellate asci and 3-septate, fusoid to ellipsoidal ascospores with rounded ends, pale brown to dark brown central cells and hyaline end cells. The asexual morph has multiseptate, filiform, intercalary, catenate, branched chlamydospores that resemble Xylomyces. The asexual morph of Keissleriella phragmiticola based on combined LSU, SSU, ITS and TEF1 sequence analyses is reported. The role of molecular identification in delineating cryptic species are also discussed.
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Affiliation(s)
| | - Mark S Calabon
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Pranami D Abeywickrama
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand.,Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - E B Gareth Jones
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Kingdom of Saudi Arabia.,Nantgaredig, Southsea, UK
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106
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He MQ, Zhao RL, Hyde KD, Begerow D, Kemler M, Yurkov A, McKenzie EHC, Raspé O, Kakishima M, Sánchez-Ramírez S, Vellinga EC, Halling R, Papp V, Zmitrovich IV, Buyck B, Ertz D, Wijayawardene NN, Cui BK, Schoutteten N, Liu XZ, Li TH, Yao YJ, Zhu XY, Liu AQ, Li GJ, Zhang MZ, Ling ZL, Cao B, Antonín V, Boekhout T, da Silva BDB, De Crop E, Decock C, Dima B, Dutta AK, Fell JW, Geml J, Ghobad-Nejhad M, Giachini AJ, Gibertoni TB, Gorjón SP, Haelewaters D, He SH, Hodkinson BP, Horak E, Hoshino T, Justo A, Lim YW, Menolli N, Mešić A, Moncalvo JM, Mueller GM, Nagy LG, Nilsson RH, Noordeloos M, Nuytinck J, Orihara T, Ratchadawan C, Rajchenberg M, Silva-Filho AGS, Sulzbacher MA, Tkalčec Z, Valenzuela R, Verbeken A, Vizzini A, Wartchow F, Wei TZ, Weiß M, Zhao CL, Kirk PM. Notes, outline and divergence times of Basidiomycota. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00435-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
AbstractThe Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.
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107
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Jesus AL, Marano AV, Gonçalves DR, Jerônimo GH, Pires-Zottarelli CLA. Two new species of Halophytophthora from Brazil. Mycol Prog 2019. [DOI: 10.1007/s11557-019-01523-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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108
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Walther G, Wagner L, Kurzai O. Updates on the Taxonomy of Mucorales with an Emphasis on Clinically Important Taxa. J Fungi (Basel) 2019; 5:E106. [PMID: 31739583 PMCID: PMC6958464 DOI: 10.3390/jof5040106] [Citation(s) in RCA: 100] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 11/06/2019] [Accepted: 11/11/2019] [Indexed: 12/11/2022] Open
Abstract
Fungi of the order Mucorales colonize all kinds of wet, organic materials and represent a permanent part of the human environment. They are economically important as fermenting agents of soybean products and producers of enzymes, but also as plant parasites and spoilage organisms. Several taxa cause life-threatening infections, predominantly in patients with impaired immunity. The order Mucorales has now been assigned to the phylum Mucoromycota and is comprised of 261 species in 55 genera. Of these accepted species, 38 have been reported to cause infections in humans, as a clinical entity known as mucormycosis. Due to molecular phylogenetic studies, the taxonomy of the order has changed widely during the last years. Characteristics such as homothallism, the shape of the suspensors, or the formation of sporangiola are shown to be not taxonomically relevant. Several genera including Absidia, Backusella, Circinella, Mucor, and Rhizomucor have been amended and their revisions are summarized in this review. Medically important species that have been affected by recent changes include Lichtheimia corymbifera, Mucor circinelloides, and Rhizopus microsporus. The species concept of Rhizopus arrhizus (syn. R. oryzae) is still a matter of debate. Currently, species identification of the Mucorales is best performed by sequencing of the internal transcribed spacer (ITS) region. Ecologically, the Mucorales represent a diverse group but for the majority of taxa, the ecological role and the geographic distribution remain unknown. Understanding the biology of these opportunistic fungal pathogens is a prerequisite for the prevention of infections, and, consequently, studies on the ecology of the Mucorales are urgently needed.
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Affiliation(s)
- Grit Walther
- German National Reference Center for Invasive Fungal Infections, Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, 07745 Jena, Germany; (L.W.); (O.K.)
| | - Lysett Wagner
- German National Reference Center for Invasive Fungal Infections, Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, 07745 Jena, Germany; (L.W.); (O.K.)
| | - Oliver Kurzai
- German National Reference Center for Invasive Fungal Infections, Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, 07745 Jena, Germany; (L.W.); (O.K.)
- Institute for Hygiene and Microbiology, University of Würzburg, 97080 Würzburg, Germany
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109
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Luo ZL, Hyde KD, Liu JK(J, Maharachchikumbura SSN, Jeewon R, Bao DF, Bhat DJ, Lin CG, Li WL, Yang J, Liu NG, Lu YZ, Jayawardena RS, Li JF, Su HY. Freshwater Sordariomycetes. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00438-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Abstract
Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi mainly characterized by perithecial ascomata and inoperculate unitunicate asci. Freshwater Sordariomycetes play an important role in ecosystems and some of them have the potential to produce bioactive compounds. This study documents and reviews the freshwater Sordariomycetes, which is one of the largest and important groups of fungi in aquatic habitats. Based on evidence from DNA sequence data and morphology, we introduce a new order Distoseptisporales, two new families, viz. Ceratosphaeriaceae and Triadelphiaceae, three new genera, viz. Aquafiliformis, Dematiosporium and Neospadicoides, 47 new species, viz. Acrodictys fluminicola, Aquafiliformis lignicola, Aquapteridospora fusiformis, Arthrinium aquaticum, Ascosacculus fusiformis, Atractospora aquatica, Barbatosphaeria lignicola, Ceratosphaeria aquatica, C. lignicola, Chaetosphaeria aquatica, Ch. catenulata, Ch. guttulata, Ch. submersa, Codinaea yunnanensis, Conioscypha aquatica, C. submersa, Cordana aquatica, C. lignicola, Cosmospora aquatica, Cylindrotrichum submersum, Dematiosporium aquaticum, Dictyochaeta cangshanensis, D. ellipsoidea, D. lignicola, D. submersa, Distoseptispora appendiculata, D. lignicola, D. neorostrata, D. obclavata, Hypoxylon lignicola, Lepteutypa aquatica, Myrmecridium aquaticum, Neospadicoides aquatica, N. lignicola, N. yunnanensis, Ophioceras submersum, Peroneutypa lignicola, Phaeoisaria filiformis, Pseudostanjehughesia lignicola, Rhodoveronaea aquatica, Seiridium aquaticum, Sporidesmiella aquatica, Sporidesmium lageniforme, S. lignicola, Tainosphaeria lunata, T. obclavata, Wongia aquatica, two new combinations, viz. Acrodictys aquatica, Cylindrotrichum aquaticum, and 9 new records, viz. Chaetomium globosum, Chaetosphaeria cubensis, Ch. myriocarpa, Cordana abramovii, Co. terrestris, Cuspidatispora xiphiago, Sporidesmiella hyalosperma, Stachybotrys chartarum,S. chlorohalonata. A comprehensive classification of the freshwater Sordariomycetes is presented based on updated literature. Phylogenetic inferences based on DNA sequence analyses of a combined LSU, SSU, RPB2 and TEF1α dataset comprising species of freshwater Sordariomycetes are provided. Detailed information including their habitats distribution, diversity, holotype, specimens collected and classification are provided.
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111
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One stop shop III: taxonomic update with molecular phylogeny for important phytopathogenic genera: 51–75 (2019). FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00433-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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112
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Marin-Felix Y, Hernández-Restrepo M, Iturrieta-González I, García D, Gené J, Groenewald J, Cai L, Chen Q, Quaedvlieg W, Schumacher R, Taylor P, Ambers C, Bonthond G, Edwards J, Krueger-Hadfield S, Luangsa-ard J, Morton L, Moslemi A, Sandoval-Denis M, Tan Y, Thangavel R, Vaghefi N, Cheewangkoon R, Crous P. Genera of phytopathogenic fungi: GOPHY 3. Stud Mycol 2019; 94:1-124. [PMID: 31636728 PMCID: PMC6797016 DOI: 10.1016/j.simyco.2019.05.001] [Citation(s) in RCA: 82] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
This paper represents the third contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions, information about the pathology, distribution, hosts and disease symptoms for the treated genera, as well as primary and secondary DNA barcodes for the currently accepted species included in these. This third paper in the GOPHY series treats 21 genera of phytopathogenic fungi and their relatives including: Allophoma, Alternaria, Brunneosphaerella, Elsinoe, Exserohilum, Neosetophoma, Neostagonospora, Nothophoma, Parastagonospora, Phaeosphaeriopsis, Pleiocarpon, Pyrenophora, Ramichloridium, Seifertia, Seiridium, Septoriella, Setophoma, Stagonosporopsis, Stemphylium, Tubakia and Zasmidium. This study includes three new genera, 42 new species, 23 new combinations, four new names, and three typifications of older names.
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Key Words
- Allophoma pterospermicola Q. Chen & L. Cai
- Alternaria aconidiophora Iturrieta-González, Dania García & Gené
- Alternaria altcampina Iturrieta-González, Dania García & Gené
- Alternaria chlamydosporifera Iturrieta-González, Dania García & Gené
- Alternaria curvata Iturrieta-González, Dania García & Gené
- Alternaria fimeti Iturrieta-González, Dania García & Gené
- Alternaria inflata Iturrieta-González, Dania García & Gené
- Alternaria lawrencei Iturrieta-González, Dania García & Gené
- Alternaria montsantina Iturrieta-González, Dania García & Gené
- Alternaria pobletensis Iturrieta-González, Dania García & Gené
- Alternaria pseudoventricosa Iturrieta-González, Dania García & Gené
- Arezzomyces Y. Marín & Crous
- Arezzomyces cytisi (Wanas. et al.) Y. Marín & Crous
- Ascochyta chrysanthemi F. Stevens
- Brunneosphaerella roupeliae Crous
- DNA barcodes
- Elsinoe picconiae Crous
- Elsinoe veronicae Crous, Thangavel & Y. Marín
- Fungal systematics
- Globoramichloridium Y. Marín & Crous
- Globoramichloridium indicum (Subram.) Y. Marín & Crous
- Neosetophoma aseptata Crous, R.K. Schumach. & Y. Marín
- Neosetophoma phragmitis Crous, R.K. Schumach. & Y. Marín
- Neosetophoma sambuci Crous, R.K. Schumach. & Y. Marín
- Neostagonospora sorghi Crous & Y. Marín
- New taxa
- Parastagonospora novozelandica Crous, Thangavel & Y. Marín
- Parastagonospora phragmitis Crous & Y. Marín
- Pestalotia unicornis Cooke & Ellis
- Phaeosphaeria phoenicicola (Crous & Thangavel) Y. Marín & Crous
- Phaeosphaeriopsis aloes Crous & Y. Marín
- Phaeosphaeriopsis aloicola Crous & Y. Marín
- Phaeosphaeriopsis grevilleae Crous & Y. Marín
- Phaeosphaeriopsis pseudoagavacearum Crous & Y. Marín
- Pleiocarpon livistonae Crous & Quaedvl.
- Pyrenophora avenicola Y. Marín & Crous
- Pyrenophora cynosuri Y. Marín & Crous
- Pyrenophora nisikadoi Y. Marín & Crous
- Pyrenophora novozelandica Y. Marín & Crous
- Pyrenophora poae (Baudyš) Y. Marín & Crous
- Pyrenophora pseudoerythrospila Y. Marín & Crous
- Pyrenophora sieglingiae Y. Marín & Crous
- Pyrenophora variabilis Hern.-Restr. & Y. Marín
- Pyrenophora wirreganensis (Wallwork et al.) Y. Marín & Crous
- Rhynchosphaeria cupressi Nattrass et al
- Seiridium cupressi (Nattrass et al.) Bonthond, Sandoval-Denis & Crous
- Seiridium pezizoides (de Not.) Crous
- Septoriella agrostina (Mapook et al.) Y. Marín & Crous
- Septoriella artemisiae (Wanas. et al.) Y. Marín & Crous
- Septoriella arundinicola (Wanas. et al.) Y. Marín & Crous
- Septoriella arundinis (W.J. Li et al.) Y. Marín & Crous
- Septoriella bromi (Wijayaw. et al.) Y. Marín & Crous
- Septoriella dactylidicola Y. Marín & Crous
- Septoriella dactylidis (Wanas. et al.) Y. Marín & Crous
- Septoriella elongata (Wehm.) Y. Marín & Crous
- Septoriella forlicesenica (Thambug. et al.) Y. Marín & Crous
- Septoriella garethjonesii (Thambug. et al.) Y. Marín & Crous
- Septoriella germanica Crous, R.K. Schumach. & Y. Marín
- Septoriella hibernica Crous, Quaedvl. & Y. Marín
- Septoriella hollandica Crous, Quaedvl. & Y. Marín
- Septoriella italica (Thambug. et al.) Y. Marín & Crous
- Septoriella muriformis (Ariyaw. et al.) Y. Marín & Crous
- Septoriella neoarundinis Y. Marín & Crous
- Septoriella neodactylidis Y. Marín & Crous
- Septoriella pseudophragmitis Crous, Quaedvl. & Y. Marín
- Septoriella rosae (Mapook et al.) Y. Marín & Crous
- Septoriella subcylindrospora (W.J. Li et al.) Y. Marín & Crous
- Septoriella vagans (Niessl) Y. Marín & Crous
- Setophoma brachypodii Crous, R.K. Schumach. & Y. Marín
- Setophoma pseudosacchari Crous & Y. Marín
- Stemphylium rombundicum Moslemi, Y.P. Tan & P.W.J. Taylor
- Stemphylium truncatulae Moslemi, Y.P. Tan & P.W.J. Taylor
- Stemphylium waikerieanum Moslemi, Jacq. Edwards & P.W.J Taylor
- Vagicola arundinis Phukhams., Camporesi & K.D. Hyde
- Wingfieldomyces Y. Marín & Crous
- Wingfieldomyces cyperi (Crous & M.J. Wingf.) Y. Marín & Crous
- Zasmidium ducassei (R.G. Shivas et al.) Y. Marín & Crous
- Zasmidium thailandicum Crous
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Affiliation(s)
- Y. Marin-Felix
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201, Reus, Spain
| | - M. Hernández-Restrepo
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands
| | - I. Iturrieta-González
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201, Reus, Spain
| | - D. García
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201, Reus, Spain
| | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201, Reus, Spain
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands
| | - L. Cai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Q. Chen
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - W. Quaedvlieg
- Royal Van Zanten, P.O. Box 265, 1430 AG, Aalsmeer, The Netherlands
| | | | - P.W.J. Taylor
- Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Melbourne, VIC, 3010, Australia
| | - C. Ambers
- P.O. Box 631, Middleburg, VA, 20118, USA
| | - G. Bonthond
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands
- Benthic Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Hohenbergstraße 2, 24105, Kiel, Germany
| | - J. Edwards
- Agriculture Victoria Research, Department of Jobs, Precincts and Regions, AgriBio Centre, Bundoora, Victoria, 3083, Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, Victoria, 3083, Australia
| | - S.A. Krueger-Hadfield
- Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, CH464, Birmingham, AL, 35294, USA
| | - J.J. Luangsa-ard
- Plant Microbe Interaction Research Team, Integrative Crop Biotechnology and Management Research Group, Bioscience and Biotechnology for Agriculture, NSTDA 113, Thailand Science Park Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - L. Morton
- P.O. Box 5607, Charlottesville, VA, 22905, USA
| | - A. Moslemi
- Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Melbourne, VIC, 3010, Australia
| | - M. Sandoval-Denis
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein, 9300, South Africa
| | - Y.P. Tan
- Department of Agriculture and Fisheries, Biosecurity Queensland, Ecosciences Precinct, Dutton Park, 4012, QLD, Australia
- Microbiology, Department of Biology, Utrecht University, Utrecht, Netherlands
| | - R. Thangavel
- Plant Health and Environment Laboratory, Ministry for Primary Industries, P.O. Box 2095, Auckland, 1140, New Zealand
| | - N. Vaghefi
- Centre for Crop Health, University of Southern Queensland, Queensland, 4350, Australia
| | - R. Cheewangkoon
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand
| | - P.W. Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands
- Department of Biochemistry, Genetics & Microbiology, Forestry & Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
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113
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Sir EB, Becker K, Lambert C, Bills GF, Kuhnert E. Observations on Texas hypoxylons, including two new Hypoxylon species and widespread environmental isolates of the H. croceum complex identified by a polyphasic approach. Mycologia 2019; 111:832-856. [PMID: 31460851 DOI: 10.1080/00275514.2019.1637705] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Two new species and a new combination of Hypoxylon from Texas were identified and described based on morphological, multigene phylogenetic (ITS [nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2], 28S [5' 1200 bp of nuc 28S rDNA], RPB2 [partial second largest subunit of the DNA-directed RNA polymerase II], TUB2 [partial β-tubulin]), and chemotaxonomic data. Hypoxylon olivaceopigmentum is characterized by its pulvinate to glomerate stromata, olivaceous KOH-extractable pigments, equilateral ascospores, and indehiscent perispore. Hypoxylon texense can be distinguished from morphologically similar species by its rust to dark brick KOH-extractable pigments and the high-performance liquid chromatography (HPLC) profile of its stromatal secondary metabolites. Hypoxylon hinnuleum is proposed as the sexual morph of Nodulisporium hinnuleum, featuring dark vinaceous glomerate stromata with dark brick KOH-extractable pigments composed of cohaerin-type azaphilones and smooth equilateral ascospores with indehiscent perispore. Based on these diagnostic characters, H. hinnuleum forms a complex with H. croceum and H. minicroceum. More than 50 ITS sequences with high identity originating from North American and East Asian environmental isolates formed a well-supported clade with the type of N. hinnuleum, demonstrating the widespread distribution of the species complex. In addition, updated descriptions and comprehensive illustrations with detailed information on the diagnostic features of H. fendleri and H. perforatum are provided. The multilocus phylogenetic reconstruction of Hypoxylon supported the status of the new species and broadened the knowledge about intergeneric relationships.
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Affiliation(s)
- Esteban B Sir
- Instituto de Bioprospección y Fisiología Vegetal-INBIOFIV (CONICET-UNT) , San Miguel de Tucumán , Argentina.,Laboratorio Criptogámico, Fundación Miguel Lillo, San Miguel de Tucumán , Argentina
| | - Kevin Becker
- Department of Microbial Drugs, Helmholtz-Zentrum für Infektionsforschung GmbH , 38124 Braunschweig , Germany.,German Centre for Infection Research (DZIF), partner site Hannover-Braunschweig , 38124 Braunschweig , Germany
| | - Christopher Lambert
- Department of Microbial Drugs, Helmholtz-Zentrum für Infektionsforschung GmbH , 38124 Braunschweig , Germany.,German Centre for Infection Research (DZIF), partner site Hannover-Braunschweig , 38124 Braunschweig , Germany
| | - Gerald F Bills
- Texas Therapeutics Institute, the Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston , Houston , Texas 77054
| | - Eric Kuhnert
- Institute for Organic Chemistry and Centre of Biomolecular Drug Research (BMWZ), Leibniz University Hannover , Hannover , 30167 , Germany
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114
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Long H, Zhang Q, Hao YY, Shao XQ, Wei XX, Hyde KD, Wang Y, Zhao DG. Diaporthe species in south-western China. MycoKeys 2019; 57:113-127. [PMID: 31523165 PMCID: PMC6717119 DOI: 10.3897/mycokeys.57.35448] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 07/15/2019] [Indexed: 11/19/2022] Open
Abstract
Three strains of the genus Diaporthe were isolated from different plant hosts in south-western China. Phylogenetic analyses of the combined ITS, β-tubulin, tef1 and calmoudulin dataset indicated that these strains represented three independent lineages in Diaporthe. Diaporthemillettiaesp. nov. clustered with D.hongkongensis and D.arecae, Diaportheosmanthisp. nov. grouped with D.arengae, D.pseudomangiferae and D.perseae and Diaporthe strain GUCC9146, isolated from Camelliasinensis, was grouped in the D.eres species complex with a close relationship to D.longicicola. These species are reported with taxonomic descriptions and illustrations.
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Affiliation(s)
- Hui Long
- Department of Plant Pathology, College of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China Guizhou University Guiyang China
| | - Qian Zhang
- Department of Plant Pathology, College of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China Guizhou University Guiyang China
| | - Yuan-Yuan Hao
- Administration Center of the Yellow River Delta Sustainable Development Institute of Sandong Province, Dongying, 257091, China Qinghai University Xining China
| | - Xian-Qiang Shao
- Dejiang County Chinese herbal medicine industry development office, Tongren, 565200, China Mae Fah Luang University Chiang Rai Thailand
| | - Xiao-Xing Wei
- Academy of Animal and Veterinary Sciences, Qinghai University (Qinghai Academy of Animal and Veterinary Sciences), Xining, China Guizhou University Guizhou China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand Guizhou Academy of Agricultural Sciences Guiyang China
| | - Yong Wang
- Department of Plant Pathology, College of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China Guizhou University Guiyang China.,Guizhou Key Laboratory Agro-Bioengineering, Guizhou University Guiyang, Guizhou, 550025, China Sustainable Development Institute of Sandong Province Dongying China
| | - De-Gang Zhao
- Guizhou Key Laboratory Agro-Bioengineering, Guizhou University Guiyang, Guizhou, 550025, China Sustainable Development Institute of Sandong Province Dongying China.,Guizhou Academy of Agricultural Sciences, Guiyang 550006, China Dejiang County Chinese herbal medicine industry development office Tongren China
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115
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116
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Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00429-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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117
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Caboň M, Li GJ, Saba M, Kolařík M, Jančovičová S, Khalid AN, Moreau PA, Wen HA, Pfister DH, Adamčík S. Phylogenetic study documents different speciation mechanisms within the Russula globispora lineage in boreal and arctic environments of the Northern Hemisphere. IMA Fungus 2019; 10:5. [PMID: 32647614 PMCID: PMC7325667 DOI: 10.1186/s43008-019-0003-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 05/01/2019] [Indexed: 11/10/2022] Open
Abstract
The Russula globispora lineage is a morphologically and phylogenetically well-defined group of ectomycorrhizal fungi occurring in various climatic areas. In this study we performed a multi-locus phylogenetic study based on collections from boreal, alpine and arctic habitats of Europe and Western North America, subalpine collections from the southeast Himalayas and collections from subtropical coniferous forests of Pakistan. European and North American collections are nearly identical and probably represent a single species named R. dryadicola distributed from the Alps to the Rocky Mountains. Collections from the southeast Himalayas belong to two distinct species: R. abbottabadensis sp. nov. from subtropical monodominant forests of Pinus roxburghii and R. tengii sp. nov. from subalpine mixed forests of Abies and Betula. The results suggest that speciation in this group is driven by a climate disjunction and adaptation rather than a host switch and geographical distance.
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Affiliation(s)
- Miroslav Caboň
- Department of Cryptogams, Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 23 Bratislava, Slovakia
| | - Guo-Jie Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No 3 1st Beichen West Road, Chaoyang District, Beijing, 100101 China
| | - Malka Saba
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320 Pakistan
- Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, 54590 Pakistan
- Farlow Reference Library and Herbarium of Cryptogamic Botany, Harvard University, Cambridge, MA 02138 USA
| | - Miroslav Kolařík
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, CZ-142 20 Praha, Czech Republic
| | - Soňa Jančovičová
- Department of Botany, Faculty of Natural Sciences, Comenius University in Bratislava, Révová 39, SK-811 02 Bratislava, Slovakia
| | - Abdul Nasir Khalid
- Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, 54590 Pakistan
| | - Pierre-Arthur Moreau
- Laboratoire IMPECS, Fac. Pharma. Lille, Université de Lille, F-59000 Lille, France
| | - Hua-An Wen
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No 3 1st Beichen West Road, Chaoyang District, Beijing, 100101 China
| | - Donald H. Pfister
- Farlow Reference Library and Herbarium of Cryptogamic Botany, Harvard University, Cambridge, MA 02138 USA
| | - Slavomír Adamčík
- Department of Cryptogams, Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 23 Bratislava, Slovakia
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118
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Phookamsak R, Hyde KD, Jeewon R, Bhat DJ, Jones EBG, Maharachchikumbura SSN, Raspé O, Karunarathna SC, Wanasinghe DN, Hongsanan S, Doilom M, Tennakoon DS, Machado AR, Firmino AL, Ghosh A, Karunarathna A, Mešić A, Dutta AK, Thongbai B, Devadatha B, Norphanphoun C, Senwanna C, Wei D, Pem D, Ackah FK, Wang GN, Jiang HB, Madrid H, Lee HB, Goonasekara ID, Manawasinghe IS, Kušan I, Cano J, Gené J, Li J, Das K, Acharya K, Raj KNA, Latha KPD, Chethana KWT, He MQ, Dueñas M, Jadan M, Martín MP, Samarakoon MC, Dayarathne MC, Raza M, Park MS, Telleria MT, Chaiwan N, Matočec N, de Silva NI, Pereira OL, Singh PN, Manimohan P, Uniyal P, Shang QJ, Bhatt RP, Perera RH, Alvarenga RLM, Nogal-Prata S, Singh SK, Vadthanarat S, Oh SY, Huang SK, Rana S, Konta S, Paloi S, Jayasiri SC, Jeon SJ, Mehmood T, Gibertoni TB, Nguyen TTT, Singh U, Thiyagaraja V, Sarma VV, Dong W, Yu XD, Lu YZ, Lim YW, Chen Y, Tkalčec Z, Zhang ZF, Luo ZL, Daranagama DA, Thambugala KM, Tibpromma S, Camporesi E, Bulgakov TS, Dissanayake AJ, Senanayake IC, Dai DQ, Tang LZ, Khan S, Zhang H, Promputtha I, Cai L, Chomnunti P, Zhao RL, Lumyong S, Boonmee S, Wen TC, Mortimer PE, Xu J. Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00421-w] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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119
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Buchta V, Nekolová J, Jirásková N, Bolehovská R, Wipler J, Hubka V. Fungal Keratitis Caused by Colletotrichum dematium: Case Study and Review. Mycopathologia 2019; 184:441-453. [DOI: 10.1007/s11046-019-00335-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Accepted: 03/23/2019] [Indexed: 02/06/2023]
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120
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Xiao YP, Hongsanan S, Hyde KD, Brooks S, Xie N, Long FY, Wen TC. Two new entomopathogenic species of Ophiocordyceps in Thailand. MycoKeys 2019:53-74. [PMID: 30828254 PMCID: PMC6395454 DOI: 10.3897/mycokeys.47.29898] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 12/14/2018] [Indexed: 02/05/2023] Open
Abstract
Ophiocordyceps is entomopathogenic and the largest studied genus in the family Ophiocordycipitaceae. Many species in this genus have been reported from Thailand. The first new species introduced in this paper, Ophiocordycepsglobiceps, differs from other species based on its smaller perithecia, shorter asci and secondary ascospores and additionally, in parasitising fly species. Phylogenetic analyses of combined LSU, SSU, ITS, TEF1α and RPB1 sequence data indicate that O.globiceps forms a distinct lineage within the genus Ophiocordyceps as a new species. The second new species, Ophiocordycepssporangifera, is distinguished from closely related species by infecting larvae of insects (Coleoptera, Elateridae) and by producing white to brown sporangia, longer secondary synnemata and shorter primary and secondary phialides. We introduce O.sporangifera based on its significant morphological differences from other similar species, even though phylogenetic distinction is not well-supported.
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Affiliation(s)
- Yuan-Pin Xiao
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Siraprapa Brooks
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Ning Xie
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Feng-Yao Long
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, China
| | - Ting-Chi Wen
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, China
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121
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Chai H, Liang ZQ, Xue R, Jiang S, Luo SH, Wang Y, Wu LL, Tang LP, Chen Y, Hong D, Zeng NK. New and noteworthy boletes from subtropical and tropical China. MycoKeys 2019:55-96. [PMID: 30846903 PMCID: PMC6401544 DOI: 10.3897/mycokeys.46.31470] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Accepted: 01/09/2019] [Indexed: 01/05/2023] Open
Abstract
The morphology, ecology, and phylogenetic relationships of specimens of the family Boletaceae from subtropical and tropical China were investigated. Four species, Butyriboletushuangnianlaii, Lanmaoamacrocarpa, Neoboletusmultipunctatus, and Sutoriussubrufus, are new to science. Chalciporusradiatus and Caloboletusxiangtoushanensis are redescribed. Caloboletusguanyui is proposed to replace Boletusquercinus Hongo, an illegitimate later homonym. The recently described Tylopiluscallainus is synonymized with the Japanese Boletusvirescens, and the new combination T.virescens (Har. Takah. & Taneyama) N.K. Zeng et al. is proposed. Moreover, Neoboletus is treated as an independent genus based on evidence from morphology and molecular phylogenetic data in the present study, and many previously described taxa of Sutorius are recombined into Neoboletus: N.ferrugineus (G. Wu et al.) N.K. Zeng et al., N.flavidus (G. Wu & Zhu L. Yang) N.K. Zeng et al., N.hainanensis (T.H. Li & M. Zang) N.K. Zeng et al., N.obscureumbrinus (Hongo) N.K. Zeng et al., N.rubriporus (G. Wu & Zhu L. Yang) N.K. Zeng et al., N.sanguineoides (G. Wu & Zhu L. Yang) N.K. Zeng et al. , N.sanguineus (G. Wu & Zhu L. Yang) N.K. Zeng et al., and N.tomentulosus (M. Zang et al.) N.K. Zeng et al.
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Affiliation(s)
- Hui Chai
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Zhi-Qun Liang
- College of Materials and Chemistry Engineering, Hainan University, Haikou 570228, China Hainan University Haikou China
| | - Rou Xue
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Shuai Jiang
- Hainan Yinggeling National Nature Reserve, Baisha, 572800, China Hainan Yinggeling National Nature Reserve Baisha China
| | - Shi-Hong Luo
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China Shenyang Agricultural University Shenyang China
| | - Yong Wang
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Lu-Ling Wu
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Li-Ping Tang
- School of Pharmaceutical Sciences and Yunnan Key Laboratory of Pharmacology for Natural Products, Kunming Medical University, Kunming, 650500, China Kunming Medical University Kunming China
| | - Yun Chen
- Hainan Yinggeling National Nature Reserve, Baisha, 572800, China Hainan Yinggeling National Nature Reserve Baisha China
| | - Deng Hong
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Nian-Kai Zeng
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
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122
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One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019). FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00418-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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123
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124
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Xiao YP, Wen TC, Hongsanan S, Jeewon R, Luangsa-Ard JJ, Brooks S, Wanasinghe DN, Long FY, Hyde KD. Multigene phylogenetics of Polycephalomyces (Ophiocordycipitaceae, Hypocreales), with two new species from Thailand. Sci Rep 2018; 8:18087. [PMID: 30591711 PMCID: PMC6308235 DOI: 10.1038/s41598-018-36792-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Accepted: 11/08/2018] [Indexed: 11/25/2022] Open
Abstract
Polycephalomyces (Ophiocordycipitaceae) species are found in subtropical regions and are parasitic or hyperparasitic on insects. Two new species, P. aurantiacus and P. marginaliradians, parasitic on Ophiocordyceps barnesii and larva of Cossidae respectively, are introduced in this paper. Morphological comparison with extant species and DNA based phylogenies from analyses of a multigene dataset support the establishment of the new taxa. Polycephalomyces aurantiacus, exhibiting a hyperparasitic lifestyle on Ophiocordyceps barnesii, differs from other species in producing orange conidia in mass and have longer β-phialides in culture. Polycephalomyces marginaliradians differs from other Ophiocordyceps species by producing single stromata with a stipe, smaller perithecia and branched α-phialides and catenate α-conidia and is parasitic on Cossidae. A combined nrSSU, nrLSU, ITS, tef-1a, rpb1 and rpb2 sequence data was analysed phylogenetically including Ophiocordyceps and Polycephalomyces taxa. The new species described herein are clearly distinct from other species in Polycephalomyces. We provide a key to the species of Polycephalomyces and discuss relevant interspecies relationships.
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Affiliation(s)
- Yuan-Pin Xiao
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, 550025, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Ting-Chi Wen
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, 550025, China.
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Rajesh Jeewon
- Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, 80837, Mauritius
| | - J Jennifer Luangsa-Ard
- Microbe Interaction and Ecology Laboratory, BIOTEC, NSTDA, 113 Thailand Science Park, Pathum Thani, 12120, Thailand
| | - Siraprapa Brooks
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Dhanushka Nadeeshan Wanasinghe
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Feng-Yao Long
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, 550025, China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
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125
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Nguyen TTT, Pangging M, Lee SH, Lee HB. Four New Records of Ascomycete Species from Korea. MYCOBIOLOGY 2018; 46:328-340. [PMID: 30637141 PMCID: PMC6319456 DOI: 10.1080/12298093.2018.1550169] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 09/27/2018] [Accepted: 10/28/2018] [Indexed: 06/09/2023]
Abstract
While evaluating fungal diversity in freshwater, grasshopper feces, and soil collected at Dokdo Island in Korea, four fungal strains designated CNUFC-DDS14-1, CNUFC-GHD05-1, CNUFC-DDS47-1, and CNUFC-NDR5-2 were isolated. Based on combination studies using phylogenies and morphological characteristics, the isolates were confirmed as Ascodesmis sphaerospora, Chaetomella raphigera, Gibellulopsis nigrescens, and Myrmecridium schulzeri, respectively. This is the first records of these four species from Korea.
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Affiliation(s)
- Thuong T. T. Nguyen
- Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, Korea
| | - Monmi Pangging
- Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, Korea
| | - Seo Hee Lee
- Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, Korea
| | - Hyang Burm Lee
- Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, Korea
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126
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Takashima Y, Seto K, Degawa Y, Guo Y, Nishizawa T, Ohta H, Narisawa K. Prevalence and Intra-Family Phylogenetic Divergence of Burkholderiaceae-Related Endobacteria Associated with Species of Mortierella. Microbes Environ 2018; 33:417-427. [PMID: 30531154 PMCID: PMC6307997 DOI: 10.1264/jsme2.me18081] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Endofungal bacteria are widespread within the phylum Mucoromycota, and these include Burkholderiaceae-related endobacteria (BRE). However, the prevalence of BRE in Mortierellomycotinan fungi and their phylogenetic divergence remain unclear. Therefore, we examined the prevalence of BRE in diverse species of Mortierella. We surveyed 238 isolates of Mortierella spp. mainly obtained in Japan that were phylogenetically classified into 59 species. BRE were found in 53 isolates consisting of 22 species of Mortierella. Among them, 20 species of Mortierella were newly reported as the fungal hosts of BRE. BRE in a Glomeribacter-Mycoavidus clade in the family Burkholderiaceae were separated phylogenetically into three groups. These groups consisted of a group containing Mycoavidus cysteinexigens, which is known to be associated with M. elongata, and two other newly distinguishable groups. Our results demonstrated that BRE were harbored by many species of Mortierella and those that associated with isolates of Mortierella spp. were more phylogenetically divergent than previously reported.
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Affiliation(s)
- Yusuke Takashima
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology.,Ibaraki University College of Agriculture
| | - Kensuke Seto
- Mountain Science Center Sugadaira Research Station, University of Tsukuba
| | - Yousuke Degawa
- Mountain Science Center Sugadaira Research Station, University of Tsukuba
| | - Yong Guo
- Ibaraki University College of Agriculture
| | - Tomoyasu Nishizawa
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology.,Ibaraki University College of Agriculture
| | - Hiroyuki Ohta
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology.,Ibaraki University College of Agriculture
| | - Kazuhiko Narisawa
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology.,Ibaraki University College of Agriculture
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127
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Hyde KD, Norphanphoun C, Chen J, Dissanayake AJ, Doilom M, Hongsanan S, Jayawardena RS, Jeewon R, Perera RH, Thongbai B, Wanasinghe DN, Wisitrassameewong K, Tibpromma S, Stadler M. Thailand’s amazing diversity: up to 96% of fungi in northern Thailand may be novel. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0415-7] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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128
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A High-Resolution Time Series Reveals Distinct Seasonal Patterns of Planktonic Fungi at a Temperate Coastal Ocean Site (Beaufort, North Carolina, USA). Appl Environ Microbiol 2018; 84:AEM.00967-18. [PMID: 30143506 DOI: 10.1128/aem.00967-18] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Accepted: 08/17/2018] [Indexed: 11/20/2022] Open
Abstract
There is a growing awareness of the ecological and biogeochemical importance of fungi in coastal marine systems. While highly diverse fungi have been discovered in these marine systems, still, little is known about their seasonality and associated drivers in coastal waters. Here, we examined fungal communities over 3 years of weekly sampling at a dynamic, temperate coastal site (Pivers Island Coastal Observatory [PICO], Beaufort, NC, USA). Fungal 18S rRNA gene abundance, operational taxonomic unit (OTU) richness, and Shannon's diversity index values exhibited prominent seasonality. Fungal 18S rRNA gene copies peaked in abundance during the summer and fall, with positive correlations with chlorophyll a, SiO4, and oxygen saturation. Diversity (measured using internal transcribed spacer [ITS] libraries) was highest during winter and lowest during summer; it was linked to temperature, pH, chlorophyll a, insolation, salinity, and dissolved inorganic carbon (DIC). Fungal communities derived from ITS libraries were dominated throughout the year by Ascomycota, with contributions from Basidiomycota, Chytridiomycota, and Mucoromycotina, and their seasonal patterns linked to water temperature, light, and the carbonate system. Network analysis revealed that while cooccurrence and exclusion existed within fungus networks, exclusion dominated the fungus-and-phytoplankton network, in contrast with reported pathogenic and nutritional interactions between marine phytoplankton and fungi. Compared with the seasonality of bacterial communities in the same samples, the timing, extent, and associated environmental variables for fungi community are unique. These results highlight the fungal seasonal dynamics in coastal water and improve our understanding of the ecology of planktonic fungi.IMPORTANCE Coastal fungal dynamics were long assumed to be due to terrestrial inputs; here, a high-resolution time series reveals strong, repeating annual patterns linked to in situ environmental conditions, arguing for a resident coastal fungal community shaped by environmental factors. These seasonal patterns do, however, differ from those observed in the bacterioplankton at the same site; e.g., fungal diversity peaks in winter, whereas bacterial diversity maxima occur in the spring and fall. While the dynamics of these communities are linked to water temperature and insolation, fungi are also influenced by the carbonate system (pH and DIC). As both fungi and heterotrophic bacteria are thought to be key organic-material metabolizers, differences in their environmental drivers may offer clues as to which group dominates secondary production at this dynamic site. Overall, this study suggests the unique ecological roles of mycoplankton and their potentially broad niche complementarities to other microbial groups in the coastal ocean.
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129
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Wijayawardene NN, Pawłowska J, Letcher PM, Kirk PM, Humber RA, Schüßler A, Wrzosek M, Muszewska A, Okrasińska A, Istel Ł, Gęsiorska A, Mungai P, Lateef AA, Rajeshkumar KC, Singh RV, Radek R, Walther G, Wagner L, Walker C, Wijesundara DSA, Papizadeh M, Dolatabadi S, Shenoy BD, Tokarev YS, Lumyong S, Hyde KD. Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota). FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0409-5] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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130
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Zhang SN, Hyde KD, Gareth Jones EB, Cheewangkoon R, Liu JK(J. Acuminatispora palmarum gen. et sp. nov. from mangrove habitats. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1433-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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131
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Wang XW, Yang FY, Meijer M, Kraak B, Sun BD, Jiang YL, Wu YM, Bai FY, Seifert KA, Crous PW, Samson RA, Houbraken J. Redefining Humicola sensu stricto and related genera in the Chaetomiaceae. Stud Mycol 2018; 93:65-153. [PMID: 30210181 PMCID: PMC6133331 DOI: 10.1016/j.simyco.2018.07.001] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
The traditional concept of the genus Humicola includes species that produce pigmented, thick-walled and single-celled spores laterally or terminally on hyphae or minimally differentiated conidiophores. More than 50 species have been described in the genus. Species commonly occur in soil, indoor environments, and compost habitats. The taxonomy of Humicola and morphologically similar genera is poorly understood in modern terms. Based on a four-locus phylogeny, the morphological concept of Humicola proved to be polyphyletic. The type of Humicola, H. fuscoatra, belongs to the Chaetomiaceae. In the Chaetomiaceae, species producing humicola-like thick-walled spores are distributed among four lineages: Humicola sensu stricto, Mycothermus, Staphylotrichum, and Trichocladium. In our revised concept of Humicola, asexual and sexually reproducing species both occur. The re-defined Humicola contains 24 species (seven new and thirteen new combinations), which are described and illustrated in this study. The species in this genus produce conidia that are lateral, intercalary or terminal on/in hyphae, and conidiophores are not formed or are minimally developed (micronematous). The ascospores of sexual Humicola species are limoniform to quadrangular in face view and bilaterally flattened with one apical germ pore. Seven species are accepted in Staphylotrichum (four new species, one new combination). Thick-walled conidia of Staphylotrichum species usually arise either from hyphae (micronematous) or from apically branched, seta-like conidiophores (macronematous). The sexual morph represented by Staphylotrichum longicolleum (= Chaetomium longicolleum) produces ascomata with long necks composed of a fused basal part of the terminal hairs, and ascospores that are broad limoniform to nearly globose, bilaterally flattened, with an apical germ pore. The Trichocladium lineage has a high morphological diversity in both asexual and sexual structures. Phylogenetic analysis revealed four subclades in this lineage. However, these subclades are genetically closely related, and no distinctive phenotypic characters are linked to any of them. Fourteen species are accepted in Trichocladium, including one new species, twelve new combinations. The type species of Gilmaniella, G. humicola, belongs to the polyphyletic family Lasiosphaeriaceae (Sordariales), but G. macrospora phylogenetically belongs to Trichocladium. The thermophilic genus Mycothermus and the type species My. thermophilum are validated, and one new Mycothermus species is described. Phylogenetic analyses show that Remersonia, another thermophilic genus, is sister to Mycothermus and two species are known, including one new species. Thermomyces verrucosus produces humicola-like conidia and is transferred to Botryotrichum based on phylogenetic affinities. This study is a first attempt to establish an inclusive modern classification of Humicola and humicola-like genera of the Chaetomiaceae. More research is needed to determine the phylogenetic relationships of “humicola”-like species outside the Chaetomiaceae.
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Affiliation(s)
- X W Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 3, 1 Beichen West Road, Chaoyang District, Beijing 100101, China.,Grassland Institute, College of Animal Science & Technology, China Agricultural University, No. 2 Yuanmingyuan West Road, Haidian District, Beijing 100193, China.,Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - F Y Yang
- Grassland Institute, College of Animal Science & Technology, China Agricultural University, No. 2 Yuanmingyuan West Road, Haidian District, Beijing 100193, China
| | - M Meijer
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - B Kraak
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - B D Sun
- China General Microbiological Culture Collection Centre, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Y L Jiang
- Department of Plant Pathology, Guizhou University, Guiyang 550025, China
| | - Y M Wu
- Department of Plant Pathology, Shangdong Agricultural University, Taian 271018, China
| | - F Y Bai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 3, 1 Beichen West Road, Chaoyang District, Beijing 100101, China
| | - K A Seifert
- Ottawa Research and Development Centre, Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6, Canada
| | - P W Crous
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.,Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa.,Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | - R A Samson
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - J Houbraken
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
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132
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133
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The family Amanitaceae: molecular phylogeny, higher-rank taxonomy and the species in China. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0405-9] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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134
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Lee SY, Jung HY. Colletotrichum kakivorum sp. nov., a new leaf spot pathogen of persimmon in Korea. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1424-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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135
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Hongsanan S, Jeewon R, Purahong W, Xie N, Liu JK, Jayawardena RS, Ekanayaka AH, Dissanayake A, Raspé O, Hyde KD, Stadler M, Peršoh D. Can we use environmental DNA as holotypes? FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0404-x] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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136
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Bennett RM, Devanadera MK, Dedeles GR. A revision of Salispina, its placement in a new family, Salispinaceae ( Rhipidiales), and description of a fourth species, S. hoi sp. nov. IMA Fungus 2018; 9:259-269. [PMID: 30622882 PMCID: PMC6317584 DOI: 10.5598/imafungus.2018.09.02.03] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 08/17/2018] [Indexed: 01/24/2023] Open
Abstract
The genus Salispina was recently described for saprotrophic estuarine oomycetes with aculeolate or spiny sporangia. The genus currently contains three species, S. intermedia, S. lobata, and S. spinosa, the latter two previously included in Halophytophthora. During a survey of mangrove-inhabiting oomycetes in the Philippines, an isolate of Salispina (USTCMS 1611), was obtained from a decaying mangrove leaf. This isolate differed from other species in the genus in a unique combination of morphological and biological characters. Phylogenetic analysis revealed it to be the sister lineage of S. lobata. Consequently, the new species name S. hoi is introduced for the isolate. In addition, Salispina spp. grouped with Sapromyces of Rhipidiales with strong support, but differs from all other known genera of the order in the weak formation of hyphal constrictions, and absence of basal thalli and a holdfast network. The new family Salispinaceae is, therefore, described to accommodate Salispina in the order Rhipidiales.
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Affiliation(s)
- Reuel M Bennett
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, D-60325 Frankfurt am Main, Germany
- Department of Biological Sciences, Institute of Ecology, Evolution and Diversity, Goethe University Frankfurt am Main, Max-von-Laue-Str. 9, D-60438 Frankfurt am Main, Germany
- Integrative Fungal Research Cluster (IPF), Georg-Voigt-Str. 14-16, D-60325 Frankfurt am Main, Germany
| | - Mark Kevin Devanadera
- Department of Biological Sciences-College of Science, Department of Biochemistry-Faculty of Pharmacy, and UST Collection of Microbial Strains (USTCMS), Research Center for the Natural and Applied Sciences, University of Santo Tomas, Manila 1015, Philippines
| | - Gina R Dedeles
- Department of Biological Sciences-College of Science, Department of Biochemistry-Faculty of Pharmacy, and UST Collection of Microbial Strains (USTCMS), Research Center for the Natural and Applied Sciences, University of Santo Tomas, Manila 1015, Philippines
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, D-60325 Frankfurt am Main, Germany
- Department of Biological Sciences, Institute of Ecology, Evolution and Diversity, Goethe University Frankfurt am Main, Max-von-Laue-Str. 9, D-60438 Frankfurt am Main, Germany
- Integrative Fungal Research Cluster (IPF), Georg-Voigt-Str. 14-16, D-60325 Frankfurt am Main, Germany
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137
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Hanafy RA, Johnson B, Elshahed MS, Youssef NH. Anaeromyces contortus, sp. nov., a new anaerobic gut fungal species (Neocallimastigomycota) isolated from the feces of cow and goat. Mycologia 2018; 110:502-512. [DOI: 10.1080/00275514.2018.1465773] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Radwa A. Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma 74074
| | - Britny Johnson
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma 74074
| | - Mostafa S. Elshahed
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma 74074
| | - Noha H. Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma 74074
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138
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Hashimoto A, Hirayama K, Takahashi H, Matsumura M, Okada G, Chen C, Huang J, Kakishima M, Ono T, Tanaka K. Resolving the Lophiostoma bipolare complex: Generic delimitations within Lophiostomataceae. Stud Mycol 2018; 90:161-189. [PMID: 29632417 PMCID: PMC5889712 DOI: 10.1016/j.simyco.2018.03.001] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Lophiostoma bipolare was taxonomically revised based on the morphological observations and phylogenetic analyses of molecular data from nuclear rDNA SSU-ITS-LSU, TUB, tef1, and rpb2 genes. Twenty-nine strains were morphologically similar to Lo. bipolare. A total of 174 sequences were generated from the Lo. bipolare complex. Phylogenetic analyses based on TUB sequence revealed 11 distinct species within the Lo. bipolare complex. Morphological features of the ascospores and the anatomical structure of the ascomata from both field collections as well as axenic culture, which have been reported previously as variable features at intraspecific levels, were compared to evaluate the taxonomic reliability of these features. To clarify the generic position of the 11 species, phylogenetic analyses were done on SSU-ITS-LSU-tef1-rpb2 gene sequences. The Lo. bipolare complex shared phylogenetic relationships with Pseudolophiostoma and Vaginatispora, and formed an additional five distinct clades from other members of Lophiostomataceae. According to its phylogenetic position, Lo. bipolare sensu stricto was distantly related to Lophiostoma s. str., and formed an independent clade within Lophiostomataceae. Lophiostoma bipolare s. str. could be distinguished from the other lophiostomataceous genera by the clypeus around the ostiolar neck and by the thin and uniformly thick peridium. A novel genus described as Lentistoma was established to accommodate this species, and the epitypification of Lentistoma bipolare (basionym: Massarina bipolaris) was proposed. Other lineages of the Lo. bipolare complex could not be separated on the basis of the ascospore size and sheath variations, but were distinguished based on ascomatal features, such as the existence of the clypeus, brown hyphae surrounding the peridium, and the contexture of the peridium, which were stable indicators of generic boundaries in Lophiostomataceae. Four additional new genera with five new species were recognised based on these morphological differences: Crassiclypeus (C. aquaticus), Flabellascoma (F. cycadicola and F. minimum), Leptoparies (Lep. palmarum), and Pseudopaucispora (Pseudop. brunneospora). Three new species were added to Pseudolophiostoma (Pseudol. cornisporum, Pseudol. obtusisporum, and Pseudol. tropicum) and two new species were added to Vaginatispora (V. amygdali and V. scabrispora). The re-evaluation of the validity of several previously recognised genera resulted in the introduction of two new genera with new combinations for Lophiostoma pseudoarmatisporum as Parapaucispora pseudoarmatispora and Vaginatispora fuckelii as Neovaginatispora fuckelii.
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Key Words
- 1 new typification
- 21 new taxa
- Crassiclypeus A. Hashim., K. Hiray. & Kaz. Tanaka
- Crassiclypeus aquaticus A. Hashim., K. Hiray. & Kaz. Tanaka
- Flabellascoma A. Hashim., K. Hiray. & Kaz. Tanaka
- Flabellascoma cycadicola A. Hashim., K. Hiray. & Kaz. Tanaka
- Flabellascoma minimum A. Hashim., K. Hiray. & Kaz. Tanaka
- Freshwater fungi
- Lentistoma A. Hashim., K. Hiray. & Kaz. Tanaka
- Lentistoma bipolare (K.D. Hyde) A. Hashim., K. Hiray. & Kaz. Tanaka
- Leptoparies A. Hashim., K. Hiray. & Kaz. Tanaka
- Leptoparies palmarum A. Hashim., K. Hiray. & Kaz. Tanaka
- Massarina bipolaris K.D. Hyde
- Neovaginatispora A. Hashim., K. Hiray. & Kaz. Tanaka
- Neovaginatispora fuckelii (Sacc.) A. Hashim., K. Hiray. & Kaz. Tanaka
- Parapaucispora A. Hashim., K. Hiray. & Kaz. Tanaka
- Parapaucispora pseudoarmatispora (Hay. Takah. et al.) A. Hashim., K. Hiray. & Kaz. Tanaka
- Pleosporales
- Pseudolophiostoma cornisporum A. Hashim., K. Hiray. & Kaz. Tanaka
- Pseudolophiostoma obtusisporum A. Hashim., K. Hiray. & Kaz. Tanaka
- Pseudolophiostoma tropicum A. Hashim., K. Hiray. & Kaz. Tanaka
- Pseudopaucispora A. Hashim., K. Hiray. & Kaz. Tanaka
- Pseudopaucispora brunneospora A. Hashim., K. Hiray. & Kaz. Tanaka
- Species complex
- Systematics
- Taxonomy
- Vaginatispora amygdali A. Hashim., K. Hiray. & Kaz. Tanaka
- Vaginatispora scabrispora A. Hashim., K. Hiray. & Kaz. Tanaka
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Affiliation(s)
- A. Hashimoto
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
- Research Fellow of the Japan Society for the Promotion of Science, 5-3-1 Kojimachi, Chiyoda-ku, Tokyo 102-0083, Japan
| | - K. Hirayama
- Apple Experiment Station, Aomori Prefectural Agriculture and Forestry Research Center, 24 Fukutami, Botandaira, Kuroishi, Aomori 036-0332, Japan
| | - H. Takahashi
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - M. Matsumura
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
- The United Graduate School of Agricultural Sciences, Iwate University, 18–8 Ueda 3 chome, Morioka, Iwate 020-8550, Japan
| | - G. Okada
- Japan Collection of Microorganisms, RIKEN BioResource Center, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan
| | - C.Y. Chen
- National Chung Hsing University, 145 Xingda Rd., South Dis., Taichung 402, Taiwan, ROC
| | - J.W. Huang
- College of Agriculture and Natural Resources, National Chung Hsing University, 250 Kuo-kuang Rd., Taichung 402, Taiwan, ROC
| | - M. Kakishima
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, Jilin Province 130118, China
- Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki 305-8572, Japan
| | - T. Ono
- Ogasawara Subtropical Branch of Tokyo Metropolitan Agriculture and Forestry Research Center, Chichijima, Ogasawara-mura, Tokyo 100-2101, Japan
| | - K. Tanaka
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
- The United Graduate School of Agricultural Sciences, Iwate University, 18–8 Ueda 3 chome, Morioka, Iwate 020-8550, Japan
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139
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Phukhamsakda C, Bhat DJ, Hongsanan S, Xu JC, Stadler M, Hyde KD. Two novel species of Neoaquastroma (Parabambusicolaceae, Pleosporales) with their phoma-like asexual morphs. MycoKeys 2018:47-62. [PMID: 29861654 PMCID: PMC5976676 DOI: 10.3897/mycokeys.34.25124] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 05/07/2018] [Indexed: 11/23/2022] Open
Abstract
The monotypic genus Neoaquastroma (Parabambusicolaceae, Pleosporales) was introduced for a microfungus isolated from a collection of dried stems of a dicotyledonous plant in Thailand. In this paper, we introduce two novel species, N.bauhiniae and N.krabiense, in this genus. Their asexual morphs comprise conidiomata with aseptate and hyaline conidia. Neoaquastromabauhiniae has ascomata, asci and ascospores that are smaller than those of N.krabiense. Descriptions and illustrations of N.bauhiniae and N.krabiense are provided and the two species compared with the type species of the genus, N.guttulatum. Evidence for the introduction of the new taxa is also provided from phylogenetic analysis of a combined dataset of partial LSU, SSU, ITS and tef1 sequence data. The phylogenetic analysis revealed a distinct lineage for N.bauhiniae and N.krabiense within the family Parabambusicolaceae.
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Affiliation(s)
- Chayanard Phukhamsakda
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China
| | - Darbhe J Bhat
- Formerly, Department of Botany, Goa University, Goa, India; No. 128/1-J, Azad Housing Society, Curca, Goa Velha, India
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Jian-Chu Xu
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,Centre of Mountain Ecosystem Studies, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China
| | - Marc Stadler
- Department of Microbial Drugs, Helmholtz Centre for Infection Research, Braunschweig, Germany
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China
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140
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Alvarado P, Moreau PA, Dima B, Vizzini A, Consiglio G, Moreno G, Setti L, Kekki T, Huhtinen S, Liimatainen K, Niskanen T. Pseudoclitocybaceae fam. nov. (Agaricales, Tricholomatineae), a new arrangement at family, genus and species level. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0400-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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141
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Jayawardena RS, Purahong W, Zhang W, Wubet T, Li X, Liu M, Zhao W, Hyde KD, Liu J, Yan J. Biodiversity of fungi on Vitis vinifera L. revealed by traditional and high-resolution culture-independent approaches. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0398-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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142
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Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0395-7] [Citation(s) in RCA: 107] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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143
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Wijayawardene NN, Hyde KD, Lumbsch HT, Liu JK, Maharachchikumbura SSN, Ekanayaka AH, Tian Q, Phookamsak R. Outline of Ascomycota: 2017. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0394-8] [Citation(s) in RCA: 157] [Impact Index Per Article: 26.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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144
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Henske JK, Wilken SE, Solomon KV, Smallwood CR, Shutthanandan V, Evans JE, Theodorou MK, O'Malley MA. Metabolic characterization of anaerobic fungi provides a path forward for bioprocessing of crude lignocellulose. Biotechnol Bioeng 2018; 115:874-884. [DOI: 10.1002/bit.26515] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 11/15/2017] [Accepted: 12/08/2017] [Indexed: 12/14/2022]
Affiliation(s)
- John K. Henske
- Department of Chemical EngineeringUniversity of CaliforniaSanta BarbaraCalifornia
| | - St. Elmo Wilken
- Department of Chemical EngineeringUniversity of CaliforniaSanta BarbaraCalifornia
| | - Kevin V. Solomon
- Department of Chemical EngineeringUniversity of CaliforniaSanta BarbaraCalifornia
- Agriculture and Biological EngineeringPurdue UniversityW. LafayetteIndiana
| | - Chuck R. Smallwood
- Environmental Molecular Sciences LaboratoryPacific Northwest National LaboratoryRichlandWashington
| | | | - James E. Evans
- Environmental Molecular Sciences LaboratoryPacific Northwest National LaboratoryRichlandWashington
| | - Michael K. Theodorou
- Animal ProductionWelfare and Veterinary SciencesHarper Adams UniversityNewportShropshireUK
| | - Michelle A. O'Malley
- Department of Chemical EngineeringUniversity of CaliforniaSanta BarbaraCalifornia
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145
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Nguyen TTT, Lee HB. Isolation and Characterization of Three Zygomycetous Fungi in Korea: Backusella circina, Circinella muscae, and Mucor ramosissimus. MYCOBIOLOGY 2018; 46:317-327. [PMID: 30637140 PMCID: PMC6319469 DOI: 10.1080/12298093.2018.1538071] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 08/23/2018] [Accepted: 08/24/2018] [Indexed: 05/05/2023]
Abstract
While surveying undiscovered fungal taxa in Korea, three rare zygomycetous fungal strains, CNUFC-PTF2-1, CNUFC-TF3-1, and CNUFC-ESAF3-1, were isolated from soil, leaf, and freshwater samples, respectively. The strains were analyzed morphologically as well as phylogenetically based on the internal transcribed spacer region and 28S rDNA sequences. Sequence analysis of the two loci revealed that the isolates, CNUFC-PTF2-1, CNUFC-TF3-1, and CNUFC-ESAF3-1, were identified as Backusella circina, Circinella muscae, and Mucor ramosissimus, respectively. These species have not yet been previously described in Korea.
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Affiliation(s)
- Thuong T T Nguyen
- Division of Food Technology, Biotechnology & Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, South Korea
| | - Hyang Burm Lee
- Division of Food Technology, Biotechnology & Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, South Korea
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146
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申 效. The Macroscopic Characteristics of Distribution of Global Terrestrial Biota—Biogeographical Regionalization Research III. INTERNATIONAL JOURNAL OF ECOLOGY 2018. [DOI: 10.12677/ije.2018.72014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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147
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Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Thilini Chethana KW, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan I, Lee H, Li J, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki I, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz FA, Li WJ, Senanayake IC, Shang QJ, Daranagama DA, de Silva NI, Thambugala KM, Abdel-Wahab MA, Bahkali AH, Berbee ML, Boonmee S, Bhat DJ, Bulgakov TS, Buyck B, Camporesi E, Castañeda-Ruiz RF, Chomnunti P, Doilom M, Dovana F, Gibertoni TB, Jadan M, Jeewon R, Jones EBG, Kang JC, Karunarathna SC, Lim YW, Liu JK, Liu ZY, Plautz HL, Lumyong S, Maharachchikumbura SSN, Matočec N, McKenzie EHC, Mešić A, Miller D, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini A, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer PE. Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species. FUNGAL DIVERS 2017. [DOI: 10.1007/s13225-017-0391-3] [Citation(s) in RCA: 112] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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148
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Nguyen TTT, Choi YJ, Lee HB. Isolation and Characterization of Three Unrecorded Zygomycete Fungi in Korea: Cunninghamella bertholletiae, Cunninghamella echinulata, and Cunninghamella elegans. MYCOBIOLOGY 2017; 45:318-326. [PMID: 29371799 PMCID: PMC5780363 DOI: 10.5941/myco.2017.45.4.318] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Revised: 11/04/2017] [Accepted: 11/12/2017] [Indexed: 05/05/2023]
Abstract
In a survey of undiscovered taxa in Korea, three zygomycete fungal strains-EML-W31, EML-HGD1-1, and EML-RUS1-1-were isolated from freshwater, grasshopper fecal, and soil samples in Korea. On the basis of the morphological characteristics and phylogenetic analysis of internal transcribed spacer and 28S rDNA, the isolates of EML-W31, EML-HGD1-1, and EML-RUS1-1 were confirmed to be Cunninghamella bertholletiae, Cunninghamella echinulata, and Cunninghamella elegans, respectively. These species have not been previously described in Korea.
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Affiliation(s)
- Thuong T T Nguyen
- Division of Food Technology, Biotechnology & Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju 61186, Korea
| | - Young-Joon Choi
- Department of Biology, College of Natural Sciences, Kunsan National University, Gunsan 54150, Korea
| | - Hyang Burm Lee
- Division of Food Technology, Biotechnology & Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju 61186, Korea
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149
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Delgado G, Koukol O, Cáceres O, Piepenbring M. The Phylogenetic Placement ofErnakulamia cochinensiswithin Pleosporales (Dothideomycetes, Ascomycota). CRYPTOGAMIE MYCOL 2017. [DOI: 10.7872/crym/v38.iss4.2017.435] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Gregorio Delgado
- EMLab P&K Houston, 6310 Rothway Street, Houston, TX 77040, USA
- Department of Mycology, Institute of Ecology, Evolution and Diversity, Goethe Universität Frankfurt, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
| | - Ondřej Koukol
- Department of Botany, Faculty of Science, Charles University, Benátská 2, CZ-128 01 Praha 2, Czech Republic
| | - Orlando Cáceres
- Centro de Investigaciones Micológicas CIMi, Autonomous University of Chiriquí (UNACHI), 0427, David, Chiriquí, Panama
| | - Meike Piepenbring
- Department of Mycology, Institute of Ecology, Evolution and Diversity, Goethe Universität Frankfurt, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
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150
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Allophoma hayatii sp. nov., an undescribed pathogenic fungus causing dieback of Lantana camara in Iran. Mycol Prog 2017. [DOI: 10.1007/s11557-017-1360-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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