101
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Additions to the lichenicolous mycobiota of Ukraine: the genus Zwackhiomyces (Xanthopyreniaceae, Collemopsidiales). UKRAINIAN BOTANICAL JOURNAL 2019. [DOI: 10.15407/ukrbotj76.04.301] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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102
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Zhang ZY, Chen WH, Zou X, Han YF, Huang JZ, Liang ZQ, Deshmukh SK. Phylogeny and taxonomy of two new Plectosphaerella (Plectosphaerellaceae, Glomerellales) species from China. MycoKeys 2019; 57:47-60. [PMID: 31423085 PMCID: PMC6694076 DOI: 10.3897/mycokeys.57.36628] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 07/28/2019] [Indexed: 11/24/2022] Open
Abstract
The genus Plectosphaerella is the largest genus in the family Plectosphaerellaceae. Some species are plant pathogens, whereas others are soil-borne. Seven Plectosphaerella isolates were collected from various locations in the southwest of China. Using multi-locus phylogenetic (LSU, ITS, EF1α, RPB2) analyses combined with morphological characteristics, two new species, Plectosphaerella guizhouensis sp. nov. and Plectosphaerella nauculaspora sp. nov. are described, illustrated and compared with related species.
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Affiliation(s)
- Zhi-Yuan Zhang
- Institute of Fungus Resources, Department of Ecology, College of Life Sciences, Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Wan-Hao Chen
- Department of Microbiology, Guiyang College of Traditional Chinese Medicine, Guiyang 550025, Guizhou, ChinaGuiyang College of Traditional Chinese MedicineGuiyangChina
| | - Xiao Zou
- Institute of Fungus Resources, Department of Ecology, College of Life Sciences, Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Yan-Feng Han
- Institute of Fungus Resources, Department of Ecology, College of Life Sciences, Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Jian-Zhong Huang
- Engineering Research Center of Industrial Microbiology, Ministry of Education, Fujian Normal University, Fuzhou 350108, Fujian, ChinaFujian Normal UniversityFujianChina
| | - Zong-Qi Liang
- Institute of Fungus Resources, Department of Ecology, College of Life Sciences, Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Sunil K. Deshmukh
- TERI-Deakin Nano Biotechnology Centre, The Energy and Resources Institute, Darbari Seth Block, IHC Complex, Lodhi Road 110003, New Delhi, IndiaThe Energy and Resources InstituteNew DelhiIndia
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103
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Helaly SE, Thongbai B, Stadler M. Diversity of biologically active secondary metabolites from endophytic and saprotrophic fungi of the ascomycete order Xylariales. Nat Prod Rep 2019; 35:992-1014. [PMID: 29774351 DOI: 10.1039/c8np00010g] [Citation(s) in RCA: 127] [Impact Index Per Article: 25.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Covering: up to December 2017 The diversity of secondary metabolites in the fungal order Xylariales is reviewed with special emphasis on correlations between chemical diversity and biodiversity as inferred from recent taxonomic and phylogenetic studies. The Xylariales are arguably among the predominant fungal endophytes, which are the producer organisms of pharmaceutical lead compounds including the antimycotic sordarins and the antiparasitic nodulisporic acids, as well as the marketed drug, emodepside. Many Xylariales are "macromycetes", which form conspicuous fruiting bodies (stromata), and the metabolite profiles that are predominant in the stromata are often complementary to those encountered in corresponding mycelial cultures of a given species. Secondary metabolite profiles have recently been proven highly informative as additional parameters to support classical morphology and molecular phylogenetic approaches in order to reconstruct evolutionary relationships among these fungi. Even the recent taxonomic rearrangement of the Xylariales has been relying on such approaches, since certain groups of metabolites seem to have significance at the species, genus or family level, respectively, while others are only produced in certain taxa and their production is highly dependent on the culture conditions. The vast metabolic diversity that may be encountered in a single species or strain is illustrated based on examples like Daldinia eschscholtzii, Hypoxylon rickii, and Pestalotiopsis fici. In the future, it appears feasible to increase our knowledge of secondary metabolite diversity by embarking on certain genera that have so far been neglected, as well as by studying the volatile secondary metabolites more intensively. Methods of bioinformatics, phylogenomics and transcriptomics, which have been developed to study other fungi, are readily available for use in such scenarios.
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Affiliation(s)
- Soleiman E Helaly
- Dept Microbial Drugs, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124 Braunschweig, Germany.
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104
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Yang Q, Chen WY, Jiang N, Tian CM. Nectria-related fungi causing dieback and canker diseases in China, with Neothyronectriacitri sp. nov. described. MycoKeys 2019; 56:49-66. [PMID: 31341399 PMCID: PMC6637038 DOI: 10.3897/mycokeys.56.36079] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 06/28/2019] [Indexed: 11/26/2022] Open
Abstract
To clarify phylogenetic relationships amongst Nectria, Neothyronectria and Thyronectria in Nectriaceae, we examined detailed morphological characters and performed phylogenetic analyses of a concatenated dataset, based on the ITS, LSU, tef1 and tub2 DNA sequences of fungal specimens in China. Four species of nectria-related fungi were identified, i.e. Nectriadematiosa, N.pseudotrichia, Neothyronectriacitri and Thyronectriapinicola. The newly described species, Neothyronectriacitri, is characterised by its ascomatal wall with bright yellow scurf, unitunicate asci, each with 4-spored and ascospores allantoid to short-cylindrical, uniseriate, muriform, hyaline to slightly yellowish-brown. This species has affinities with other one known species of Neothyronectria and can be distinguished by molecular data.
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Affiliation(s)
- Qin Yang
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, P.R. China Beijing Forestry University Beijing China
| | - Wen-Yan Chen
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, P.R. China Beijing Forestry University Beijing China
| | - Ning Jiang
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, P.R. China Beijing Forestry University Beijing China
| | - Cheng-Ming Tian
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, P.R. China Beijing Forestry University Beijing China
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105
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Zheng HD, Zhuang WY. Three new species of Dicephalospora from China as revealed by morphological and molecular evidences. MycoKeys 2019; 55:87-99. [PMID: 31312096 PMCID: PMC6614148 DOI: 10.3897/mycokeys.55.33859] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 05/21/2019] [Indexed: 11/16/2022] Open
Abstract
Three new species of Dicephalospora are introduced based on morphological characters and DNA sequence analyses (maximum parsimony and neighbor-joining methods), viz. D.albolutea, D.shennongjiana, and D.yunnanica. All of them lack mucilaginous caps at ascospore poles. Dicephalosporaalbolutea is distinguished by cream to yellowish white apothecia and slightly curved ascospores. Dicephalosporashennongjiana is characterized by yellow apothecia, elliptical-fusoid ascospores 19−22 × 7−8.8 μm, and J+ asci 130−150 × 14−16.5 μm. Dicephalosporayunnanica is distinguished by orange apothecia and fusoid ascospores 16.5−25.3 × 3.3−3.5 μm. Descriptions and illustrations of the new species as well as a key to the known species in the genus are provided.
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Affiliation(s)
- Huan-Di Zheng
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China Institute of Microbiology, Chinese Academy of Sciences Beijing China
| | - Wen-Ying Zhuang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China Institute of Microbiology, Chinese Academy of Sciences Beijing China
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106
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Jiang N, Voglmayr H, Tian CM. Morphology and phylogeny reveal two novel Coryneum species from China. MycoKeys 2019; 56:67-80. [PMID: 31341400 PMCID: PMC6637033 DOI: 10.3897/mycokeys.56.35554] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2019] [Accepted: 05/31/2019] [Indexed: 11/12/2022] Open
Abstract
Coryneum is currently the sole genus of Coryneaceae in Diaporthales, distinguished from other diaporthalean genera by transversely distoseptate brown conidia. However, Coryneum species are presently difficult to identify because of variability and overlap of morphological characters and the lack of sequence data for most described species. During fungal collection trips in China, 13 Coryneum isolates were obtained from cankered branches of Ilex and Quercus. Morphological and phylogenetic analyses (ITS, LSU, TEF1-α and RPB2) revealed that these strains belong to two new species (viz. Coryneumilicissp. nov. and C.songshanensesp. nov.), and three known species, C.gigasporum, C.sinense, and C.suttonii. Coryneumilicis has larger conidia and more distosepta than most Coryneum species. Coryneumsongshanense was similar to C.sinense from the same host genus, Quercus, in conidial length, but distinct in conidial width and by molecular data.
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Affiliation(s)
- Ning Jiang
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, China Beijing Forestry University Beijing China
| | - Hermann Voglmayr
- Institute of Forest Entomology, Forest Pathology and Forest Protection, Department of Forest and Soil Sciences, BOKU-University of Natural Resources and Life Sciences, Franz Schwackhöfer Haus, Peter-Jordan-Straße 82/I, 1190 Vienna, Austria University of Natural Resources and Life Sciences Vienna Austria.,Division of Systematic and Evolutionary Botany, Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria University of Vienna Vienna Austria
| | - Cheng-Ming Tian
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, China Beijing Forestry University Beijing China
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107
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Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00429-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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108
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Johnston PR, Quijada L, Smith CA, Baral HO, Hosoya T, Baschien C, Pärtel K, Zhuang WY, Haelewaters D, Park D, Carl S, López-Giráldez F, Wang Z, Townsend JP. A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes. IMA Fungus 2019; 10:1. [PMID: 32647610 PMCID: PMC7325659 DOI: 10.1186/s43008-019-0002-x] [Citation(s) in RCA: 91] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Accepted: 04/30/2019] [Indexed: 12/31/2022] Open
Abstract
Fungi in the class Leotiomycetes are ecologically diverse, including mycorrhizas, endophytes of roots and leaves, plant pathogens, aquatic and aero-aquatic hyphomycetes, mammalian pathogens, and saprobes. These fungi are commonly detected in cultures from diseased tissue and from environmental DNA extracts. The identification of specimens from such character-poor samples increasingly relies on DNA sequencing. However, the current classification of Leotiomycetes is still largely based on morphologically defined taxa, especially at higher taxonomic levels. Consequently, the formal Leotiomycetes classification is frequently poorly congruent with the relationships suggested by DNA sequencing studies. Previous class-wide phylogenies of Leotiomycetes have been based on ribosomal DNA markers, with most of the published multi-gene studies being focussed on particular genera or families. In this paper we collate data available from specimens representing both sexual and asexual morphs from across the genetic breadth of the class, with a focus on generic type species, to present a phylogeny based on up to 15 concatenated genes across 279 specimens. Included in the dataset are genes that were extracted from 72 of the genomes available for the class, including 10 new genomes released with this study. To test the statistical support for the deepest branches in the phylogeny, an additional phylogeny based on 3156 genes from 51 selected genomes is also presented. To fill some of the taxonomic gaps in the 15-gene phylogeny, we further present an ITS gene tree, particularly targeting ex-type specimens of generic type species. A small number of novel taxa are proposed: Marthamycetales ord. nov., and Drepanopezizaceae and Mniaeciaceae fams. nov. The formal taxonomic changes are limited in part because of the ad hoc nature of taxon and specimen selection, based purely on the availability of data. The phylogeny constitutes a framework for enabling future taxonomically targeted studies using deliberate specimen selection. Such studies will ideally include designation of epitypes for the type species of those genera for which DNA is not able to be extracted from the original type specimen, and consideration of morphological characters whenever genetically defined clades are recognized as formal taxa within a classification.
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Affiliation(s)
- Peter R. Johnston
- Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, 1142 New Zealand
| | - Luis Quijada
- Department of Organismic and Evolutionary Biology, Harvard Herbarium, 22 Divinity Ave, Cambridge, MA 02138 USA
| | | | | | - Tsuyoshi Hosoya
- Department of Botany, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki 305-0005 Japan
| | - Christiane Baschien
- Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 38124 Braunschweig, Germany
| | - Kadri Pärtel
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, EE-51005 Tartu, Estonia
| | - Wen-Ying Zhuang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101 China
| | - Danny Haelewaters
- Department of Organismic and Evolutionary Biology, Harvard Herbarium, 22 Divinity Ave, Cambridge, MA 02138 USA
- Faculty of Science, University of South Bohemia, Branišovská 31, 370 05 České Budějovice, Czech Republic
| | - Duckchul Park
- Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, 1142 New Zealand
| | - Steffen Carl
- Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 38124 Braunschweig, Germany
| | | | - Zheng Wang
- Department of Biostatistics, Yale University, 135 College St, New Haven, CT 06510 USA
| | - Jeffrey P. Townsend
- Department of Biostatistics, Yale University, 135 College St, New Haven, CT 06510 USA
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109
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Parakarstenia phyllostachydis, a new genus and species of non-lichenized Odontotremataceae (Ostropales, Ascomycota). Mycol Prog 2019. [DOI: 10.1007/s11557-019-01492-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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110
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Guzow-Krzemińska B, Jabłońska A, Flakus A, Pamela Rodriguez-Flakus, Kosecka M, Kukwa M. Phylogenetic placement of Leprariacryptovouauxii sp. nov. (Lecanorales, Lecanoromycetes, Ascomycota) with notes on other Lepraria species from South America. MycoKeys 2019; 53:1-22. [PMID: 31160883 PMCID: PMC6536479 DOI: 10.3897/mycokeys.53.33508] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 04/02/2019] [Indexed: 11/25/2022] Open
Abstract
Leprariacryptovouauxii is described as a new semicryptic species similar to L.vouauxii, from which it differs geographically (South America) and phylogenetically; both species differ in nucleotide position characters in nucITS barcoding marker. Leprariaharrisiana is reported as new to South America and L.nothofagi as new to Antarctica, Bolivia, and Peru. Leprariaincana (South American records are referred to L.aff.hodkinsoniana) and L.vouauxii (most South American records are referred to L.cryptovouauxii) should be excluded at least temporarily from the lichen list of South America. All records previously referred to as L.alpina from Bolivia and Peru belong to L.nothofagi. Most of Bolivian records of L.pallida belong to L.harrisiana. Leprariaborealis and L.caesioalba should be included in L.neglecta. Leprariaachariana, L.impossibilis, and L.sipmaniana are sequenced for the first time.
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Affiliation(s)
- Beata Guzow-Krzemińska
- Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, PolandUniversity of GdańskGdańskPoland
| | - Agnieszka Jabłońska
- Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, PolandUniversity of GdańskGdańskPoland
| | - Adam Flakus
- Department of Lichenology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, PolandW. Szafer Institute of Botany, Polish Academy of SciencesKrakówPoland
| | - Pamela Rodriguez-Flakus
- Laboratory of Molecular Analyses, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, PolandInstitute of Botany, Polish Academy of SciencesKrakówPoland
| | - Magdalena Kosecka
- Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, PolandUniversity of GdańskGdańskPoland
| | - Martin Kukwa
- Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, PolandUniversity of GdańskGdańskPoland
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111
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Jones EBG, Pang KL, Abdel-Wahab MA, Scholz B, Hyde KD, Boekhout T, Ebel R, Rateb ME, Henderson L, Sakayaroj J, Suetrong S, Dayarathne MC, Kumar V, Raghukumar S, Sridhar KR, Bahkali AHA, Gleason FH, Norphanphoun C. An online resource for marine fungi. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00426-5] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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112
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Dayarathne MC, Maharachchikumbura SSN, Jones EBG, Dong W, Devadatha B, Yang J, Ekanayaka AH, De Silva W, Sarma VV, Al-Sadi AM, Khongphinitbunjong K, Hyde KD, Zhao RL. Phylogenetic Revision of Savoryellaceae and Evidence for Its Ranking as a Subclass. Front Microbiol 2019; 10:840. [PMID: 31133992 PMCID: PMC6514050 DOI: 10.3389/fmicb.2019.00840] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Accepted: 04/02/2019] [Indexed: 01/17/2023] Open
Abstract
Morphology, phylogeny, and molecular clock analyses were carried out on Savoryellaceae in order to understand the placements of taxa in this family. Ascotaiwania and Neoascotaiwania formed a well-supported separate clade in the phylogeny of concatenated partial SSU, LSU, TEF, and RPB2 gene data. These two genera share similar morphological features, especially in their asexual morphs, indicating that they are congeneric. Hence, we synonymize Neoascotaiwania under Ascotaiwania. Ascotaiwania hughesii (and its asexual morph, Helicoon farinosum) and Monotosporella setosa grouped in a clade sister to Pleurotheciales and are excluded from Ascotaiwania which becomes monophyletic. A novel genus Helicoascotaiwania is introduced to accommodate Ascotaiwania hughesii and its asexual morph, Helicoon farinosum. A novel species, Savoryella yunnanensis is introduced from a freshwater habitat in Yunnan Province, China. Comprehensive descriptions and illustrations are provided for selected taxa in this family. In addition, we provide evolutionary divergence estimates for Savoryellomycetidae taxa and major marine based taxa to support our phylogenetic and morphological investigations. The taxonomic placement of these marine-based taxa is briefly discussed. Our results indicate that the most basal group of marine-based taxa are represented within Lulworthiales, which diverged from ancestral Sordariomycetes around 149 Mya (91-209) and Savoryellomycetidae around 213 Mya (198-303).
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Affiliation(s)
- Monika C Dayarathne
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand.,World Agroforestry Centre East and Central Asia Office, Kunming, China.,Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.,Department of Botany and Microbiology, College of Sciences, King Saud University, Riyadh, Saudi Arabia
| | | | - E B Gareth Jones
- Department of Botany and Microbiology, College of Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Wei Dong
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand.,World Agroforestry Centre East and Central Asia Office, Kunming, China
| | - Bandarupalli Devadatha
- Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, India
| | - Jing Yang
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Anusha H Ekanayaka
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Wasana De Silva
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Vemuri V Sarma
- Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, India
| | - Abdullah M Al-Sadi
- Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Muscat, Oman
| | | | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand.,World Agroforestry Centre East and Central Asia Office, Kunming, China.,Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
| | - Rui Lin Zhao
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.,College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
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113
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Phookamsak R, Hyde KD, Jeewon R, Bhat DJ, Jones EBG, Maharachchikumbura SSN, Raspé O, Karunarathna SC, Wanasinghe DN, Hongsanan S, Doilom M, Tennakoon DS, Machado AR, Firmino AL, Ghosh A, Karunarathna A, Mešić A, Dutta AK, Thongbai B, Devadatha B, Norphanphoun C, Senwanna C, Wei D, Pem D, Ackah FK, Wang GN, Jiang HB, Madrid H, Lee HB, Goonasekara ID, Manawasinghe IS, Kušan I, Cano J, Gené J, Li J, Das K, Acharya K, Raj KNA, Latha KPD, Chethana KWT, He MQ, Dueñas M, Jadan M, Martín MP, Samarakoon MC, Dayarathne MC, Raza M, Park MS, Telleria MT, Chaiwan N, Matočec N, de Silva NI, Pereira OL, Singh PN, Manimohan P, Uniyal P, Shang QJ, Bhatt RP, Perera RH, Alvarenga RLM, Nogal-Prata S, Singh SK, Vadthanarat S, Oh SY, Huang SK, Rana S, Konta S, Paloi S, Jayasiri SC, Jeon SJ, Mehmood T, Gibertoni TB, Nguyen TTT, Singh U, Thiyagaraja V, Sarma VV, Dong W, Yu XD, Lu YZ, Lim YW, Chen Y, Tkalčec Z, Zhang ZF, Luo ZL, Daranagama DA, Thambugala KM, Tibpromma S, Camporesi E, Bulgakov TS, Dissanayake AJ, Senanayake IC, Dai DQ, Tang LZ, Khan S, Zhang H, Promputtha I, Cai L, Chomnunti P, Zhao RL, Lumyong S, Boonmee S, Wen TC, Mortimer PE, Xu J. Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00421-w] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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114
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Samarakoon MC, Hyde KD, Hongsanan S, McKenzie EHC, Ariyawansa HA, Promputtha I, Zeng XY, Tian Q, Liu JK(J. Divergence time calibrations for ancient lineages of Ascomycota classification based on a modern review of estimations. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00423-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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115
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116
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Jiang HB, Hyde KD, Jayawardena RS, Doilom M, Xu J, Phookamsak R. Taxonomic and phylogenetic characterizations reveal two new species and two new records of Roussoella (Roussoellaceae, Pleosporales) from Yunnan, China. Mycol Prog 2019. [DOI: 10.1007/s11557-019-01471-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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117
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Zhou S, Qiao L, Jayawardena RS, Hyde KD, Xiaoya Ma, Wen T, Kang J. Two new endophytic Colletotrichum species from Nothapodytespittosporoides in China. MycoKeys 2019; 49:1-14. [PMID: 30914842 PMCID: PMC6422929 DOI: 10.3897/mycokeys.49.31904] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2018] [Accepted: 02/20/2019] [Indexed: 01/18/2023] Open
Abstract
Two new endophytic species, Colletotrichumjishouense sp. nov. and. C.tongrenense sp. nov. were isolated from Nothapodytespittosporoides in Guizhou and Hunan provinces, China. Detailed descriptions and illustrations of these new taxa are provided and morphological comparisons with similar taxa are explored. Phylogenetic analysis with combined sequence data (ITS, GAPDH, ACT and TUB2) demonstrated that both species formed distinct clades in this genus. This is the first record of Colletotrichum species from N.pittosporoides in China.
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Affiliation(s)
- Sixuan Zhou
- Engineering Research Center of the Utilization for Characteristic Bio-Pharmaceutical Resources in Southwest, Ministry of Education/College of Life Sciences, Guizhou University, Guiyang, Guizhou Province 550025, ChinaGuizhou UniversityGuiyangChina
- Institute of Animal Husbandry and Veterinary, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou province 550006, ChinaGuizhou Academy of Agricultural SciencesGuiyangChina
| | - Lijun Qiao
- Engineering Research Center of the Utilization for Characteristic Bio-Pharmaceutical Resources in Southwest, Ministry of Education/College of Life Sciences, Guizhou University, Guiyang, Guizhou Province 550025, ChinaGuizhou UniversityGuiyangChina
| | - Ruvishika S. Jayawardena
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, ThailandMae Fah Luang UniversityChiang RaiThailand
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, ThailandMae Fah Luang UniversityChiang RaiThailand
| | - Xiaoya Ma
- Engineering Research Center of the Utilization for Characteristic Bio-Pharmaceutical Resources in Southwest, Ministry of Education/College of Life Sciences, Guizhou University, Guiyang, Guizhou Province 550025, ChinaGuizhou UniversityGuiyangChina
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, ThailandMae Fah Luang UniversityChiang RaiThailand
| | - Tingchi Wen
- Engineering Research Center of the Utilization for Characteristic Bio-Pharmaceutical Resources in Southwest, Ministry of Education/College of Life Sciences, Guizhou University, Guiyang, Guizhou Province 550025, ChinaGuizhou UniversityGuiyangChina
| | - Jichuan Kang
- Engineering Research Center of the Utilization for Characteristic Bio-Pharmaceutical Resources in Southwest, Ministry of Education/College of Life Sciences, Guizhou University, Guiyang, Guizhou Province 550025, ChinaGuizhou UniversityGuiyangChina
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118
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Qiao M, Tian W, Castañeda-Ruiz RF, Xu J, Yu Z. Two new species of Verruconis from Hainan, China. MycoKeys 2019; 48:41-53. [PMID: 30872943 PMCID: PMC6414473 DOI: 10.3897/mycokeys.48.32147] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Accepted: 01/30/2019] [Indexed: 11/29/2022] Open
Abstract
Two new species of the genus Verruconis, V.hainanensis and V.pseudotricladiata, were described using combined morphological and DNA sequence data. The DNA sequences of respective strains including nuclear ribosomal DNA genes (nuSSU, ITS, nuLSU) and fragments of three protein-coding genes (ACT1, BT2, TEF1) were sequenced and compared with those from closely-related species to genera Ochroconis and Verruconis (Family Sympoventuriaceae, Order Venturiales). Morphologically, both species showed typical ampulliform conidiophores and conidiogenous cells, features not seen in other species of Verruconis. The conidia of V.hainanensis are fusiform and those of V.pseudotricladiata are Y or T shaped, similar to old members of a closely-related genus Scolecobasidium. The addition of these two new species provides a new perspective on the heterogeneity of Scolecobasidium.
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Affiliation(s)
- Min Qiao
- Laboratory for Conservation and Utilization of Bio-resources, Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming, Yunnan 650091, China
| | - Weiguang Tian
- Laboratory for Conservation and Utilization of Bio-resources, Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming, Yunnan 650091, China.,School of Life Science, Yunnan University, Kunming, China
| | - Rafael F Castañeda-Ruiz
- Instituto de Investigaciones Fundamentales en Agricultura Tropical "Alejandro de Humboldt", Calle 1 Esq. 2, Santiago, de Las Vegas, Cuba
| | - Jianping Xu
- Laboratory for Conservation and Utilization of Bio-resources, Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming, Yunnan 650091, China.,Department of Biology, McMaster University, Hamilton, Ontario, L8S 4K1, Canada
| | - Zefen Yu
- School of Life Science, Yunnan University, Kunming, China
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119
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120
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Melanocamarosporioides ugamica gen. et sp. nov., a novel member of the family Melanommataceae from Uzbekistan. Mycol Prog 2019. [DOI: 10.1007/s11557-018-1448-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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121
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Xiao YP, Hongsanan S, Hyde KD, Brooks S, Xie N, Long FY, Wen TC. Two new entomopathogenic species of Ophiocordyceps in Thailand. MycoKeys 2019:53-74. [PMID: 30828254 PMCID: PMC6395454 DOI: 10.3897/mycokeys.47.29898] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 12/14/2018] [Indexed: 02/05/2023] Open
Abstract
Ophiocordyceps is entomopathogenic and the largest studied genus in the family Ophiocordycipitaceae. Many species in this genus have been reported from Thailand. The first new species introduced in this paper, Ophiocordycepsglobiceps, differs from other species based on its smaller perithecia, shorter asci and secondary ascospores and additionally, in parasitising fly species. Phylogenetic analyses of combined LSU, SSU, ITS, TEF1α and RPB1 sequence data indicate that O.globiceps forms a distinct lineage within the genus Ophiocordyceps as a new species. The second new species, Ophiocordycepssporangifera, is distinguished from closely related species by infecting larvae of insects (Coleoptera, Elateridae) and by producing white to brown sporangia, longer secondary synnemata and shorter primary and secondary phialides. We introduce O.sporangifera based on its significant morphological differences from other similar species, even though phylogenetic distinction is not well-supported.
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Affiliation(s)
- Yuan-Pin Xiao
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Siraprapa Brooks
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Ning Xie
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Feng-Yao Long
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, China
| | - Ting-Chi Wen
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, China
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122
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Zhang ZY, Han YF, Chen WH, Liang ZQ. Phylogeny and taxonomy of three new Ctenomyces (Arthrodermataceae, Onygenales) species from China. MycoKeys 2019; 47:1-16. [PMID: 30820164 PMCID: PMC6393398 DOI: 10.3897/mycokeys.47.30740] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Accepted: 01/29/2019] [Indexed: 11/14/2022] Open
Abstract
Twelve Ctenomyces (Arthrodermataceae, Onygenales) strains were obtained and identified during a survey of keratinophilic fungi in soils from China. We used molecular identification combined with morphological evidence to delimit species, circumscribing five species in the genus. Three new species are herein described: C.albus sp. nov., C.obovatus sp. nov. and C.peltricolor sp. nov. We also described, illustrated and compared the novel species with related species in the morphology.
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Affiliation(s)
- Zhi-Yuan Zhang
- Institute of Fungus Resources, Department of Ecology, College of Life Sciences, Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Yan-Feng Han
- Institute of Fungus Resources, Department of Ecology, College of Life Sciences, Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Wan-Hao Chen
- Department of Microbiology, Guiyang College of Traditional Chinese Medicine, Guiyang 550025, Guizhou, ChinaGuiyang College of Traditional Chinese MedicineGuiyangChina
| | - Zong-Qi Liang
- Institute of Fungus Resources, Department of Ecology, College of Life Sciences, Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
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123
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Davolos D, Pietrangeli B, Persiani AM, Maggi O. Victoriomyces antarcticus gen. nov., sp. nov., a distinct evolutionary lineage of the Cephalothecaceae (Ascomycota) based on sequence-based phylogeny and morphology. Int J Syst Evol Microbiol 2019; 69:1099-1110. [PMID: 30767849 DOI: 10.1099/ijsem.0.003275] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
In this study, we propose a new genus, Victoriomyces, with a new species, Victoriomyces antarcticus, isolated from soil samples collected in Victoria Land, Antarctica. To determine its taxonomic status and evolutionary relationships, phylogenetic analysis was performed on DNA sequences from the nuclear 18S rRNA, 28S rRNA and the second largest subunit of RNA polymerase II (RPB2) genes. Victoriomyces antarcticus constitutes one well-supported distinct lineage within the Cephalothecaceae (family incertae sedis in Sordariomycetes), in which the only recognised asexual morphs belong to the genus Phialemonium and to Acremonium thermophilum. Victoriomyces antarcticus can be clearly distinguished from these taxa by means of DNA sequence analysis and its morphological traits that consist in having a Metarhizium-like asexual morph, dark red-coloured disk-like structures, immature bodies and the production of an intense red pigment in the growth media. Finally, we inferred the divergence time of V. antarcticus and the Cephalothecaceae using Bayesian analysis and secondary calibration. The holotype of V. antarcticus is FBL 165. The ex-type strain has been deposited as MUT 3686T and CCF 6158T. An additional strain of the species is FBL 577. The MycoBank number is MB 823713 for the genus and MB 823714 for the species.
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Affiliation(s)
- Domenico Davolos
- Department of Technological Innovations and Safety of Plants, Products and Anthropic Settlements, INAIL, Research Area, Via R. Ferruzzi 38/40 - 00143 Rome, Italy
| | - Biancamaria Pietrangeli
- Department of Technological Innovations and Safety of Plants, Products and Anthropic Settlements, INAIL, Research Area, Via R. Ferruzzi 38/40 - 00143 Rome, Italy
| | - Anna Maria Persiani
- Department of Environmental Biology, Sapienza University of Rome, Piazzale A. Moro, 5 -00185 Rome, Italy
| | - Oriana Maggi
- Department of Environmental Biology, Sapienza University of Rome, Piazzale A. Moro, 5 -00185 Rome, Italy
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124
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One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019). FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00418-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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125
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Ametrano CG, Knudsen K, Kocourková J, Grube M, Selbmann L, Muggia L. Phylogenetic relationships of rock-inhabiting black fungi belonging to the widespread genera Lichenothelia and Saxomyces. Mycologia 2019; 111:127-160. [PMID: 30724710 DOI: 10.1080/00275514.2018.1543510] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Rock-inhabiting fungi (RIF) are adapted to thrive in oligotrophic environments and to survive under conditions of abiotic stress. Under these circumstances, they form biocoenoses with other tolerant organisms, such as lichens, or with less specific phototrophic consortia of aerial algae or cyanobacteria. RIF are phylogenetically diverse, and their plastic morphological characters hamper the straightforward species delimitation of many taxa. Here, we present a phylogenetic study of two RIF genera, Lichenothelia and Saxomyces. Representatives of both genera inhabit rather similar niches on rocks, but their phylogenetic relationships are unknown so far. The cosmopolitan genus Lichenothelia is recognized by characters of fertile ascomata and includes species with different life strategies. In contrast, Saxomyces species were described exclusively by mycelial characters found in cultured isolates from rock samples collected at high alpine elevations. Here, we use an extended taxon sampling of Dothideomycetes to study the phylogenetic relationships of both Lichenothelia and Saxomyces. We consider environmental samples, type species, and cultured isolates of both genera and demonstrate their paraphyly, as well as the occurrence of teleomorphs in Saxomyces. We applied three species delimitation methods to improve species recognition based on molecular data. We show the distinctiveness of the two main lineages of Lichenothelia (Lichenotheliales s. str.) and Saxomyces and discuss differences in species delimitation depending on molecular markers or methods. We revise the taxonomy of the two genera and describe three new taxa, Lichenothelia papilliformis, L. muriformis, and Saxomyces americanus, and the teleomorph of S. penninicus.
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Affiliation(s)
- Claudio G Ametrano
- a Department of Life Sciences , University of Trieste , via Giorgieri 10, 34127 Trieste , Italy
| | - Kerry Knudsen
- b Department of Ecology, Faculty of Environmental Sciences , Czech University of Life Sciences Prague , Czech Republic, Kamýcká 129, 16500 Praha 6 , Czech Republic
| | - Jana Kocourková
- b Department of Ecology, Faculty of Environmental Sciences , Czech University of Life Sciences Prague , Czech Republic, Kamýcká 129, 16500 Praha 6 , Czech Republic
| | - Martin Grube
- c Institute of Plant Science, Karl-Franzens University of Graz , Holteigasse 6, 8010 Graz , Austria
| | - Laura Selbmann
- d Department of Ecological and Biological Sciences , University of Tuscia, Largo dell' Università , 01100 Viterbo , Italy.,e Mycological Section , Italian Antarctic National Museum (MNA) , Genova , Italy
| | - Lucia Muggia
- a Department of Life Sciences , University of Trieste , via Giorgieri 10, 34127 Trieste , Italy
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126
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Xiao YP, Wen TC, Hongsanan S, Jeewon R, Luangsa-Ard JJ, Brooks S, Wanasinghe DN, Long FY, Hyde KD. Multigene phylogenetics of Polycephalomyces (Ophiocordycipitaceae, Hypocreales), with two new species from Thailand. Sci Rep 2018; 8:18087. [PMID: 30591711 PMCID: PMC6308235 DOI: 10.1038/s41598-018-36792-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Accepted: 11/08/2018] [Indexed: 11/25/2022] Open
Abstract
Polycephalomyces (Ophiocordycipitaceae) species are found in subtropical regions and are parasitic or hyperparasitic on insects. Two new species, P. aurantiacus and P. marginaliradians, parasitic on Ophiocordyceps barnesii and larva of Cossidae respectively, are introduced in this paper. Morphological comparison with extant species and DNA based phylogenies from analyses of a multigene dataset support the establishment of the new taxa. Polycephalomyces aurantiacus, exhibiting a hyperparasitic lifestyle on Ophiocordyceps barnesii, differs from other species in producing orange conidia in mass and have longer β-phialides in culture. Polycephalomyces marginaliradians differs from other Ophiocordyceps species by producing single stromata with a stipe, smaller perithecia and branched α-phialides and catenate α-conidia and is parasitic on Cossidae. A combined nrSSU, nrLSU, ITS, tef-1a, rpb1 and rpb2 sequence data was analysed phylogenetically including Ophiocordyceps and Polycephalomyces taxa. The new species described herein are clearly distinct from other species in Polycephalomyces. We provide a key to the species of Polycephalomyces and discuss relevant interspecies relationships.
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Affiliation(s)
- Yuan-Pin Xiao
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, 550025, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Ting-Chi Wen
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, 550025, China.
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Rajesh Jeewon
- Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, 80837, Mauritius
| | - J Jennifer Luangsa-Ard
- Microbe Interaction and Ecology Laboratory, BIOTEC, NSTDA, 113 Thailand Science Park, Pathum Thani, 12120, Thailand
| | - Siraprapa Brooks
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Dhanushka Nadeeshan Wanasinghe
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Feng-Yao Long
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, 550025, China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
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127
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Stenroos S, Pino‐Bodas R, Hyvönen J, Lumbsch HT, Ahti T. Phylogeny of the family Cladoniaceae (Lecanoromycetes, Ascomycota) based on sequences of multiple loci. Cladistics 2018; 35:351-384. [DOI: 10.1111/cla.12363] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/15/2018] [Indexed: 12/14/2022] Open
Affiliation(s)
- Soili Stenroos
- Finnish Museum of Natural History Botany Unit University of Helsinki PO Box 47 FI‐00014 Helsinki Finland
| | | | - Jaakko Hyvönen
- Finnish Museum of Natural History Botany Unit University of Helsinki PO Box 47 FI‐00014 Helsinki Finland
| | | | - Teuvo Ahti
- Finnish Museum of Natural History Botany Unit University of Helsinki PO Box 47 FI‐00014 Helsinki Finland
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128
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Senwanna C, Hyde KD, Phookamsak R, E B Gareth Jones, Cheewangkoon R. Coryneumheveanum sp. nov. (Coryneaceae, Diaporthales) on twigs of Para rubber in Thailand. MycoKeys 2018:75-90. [PMID: 30574012 PMCID: PMC6292983 DOI: 10.3897/mycokeys.43.29365] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 11/14/2018] [Indexed: 11/18/2022] Open
Abstract
During studies of microfungi on para rubber in Thailand, we collected a new Coryneum species on twigs which we introduce herein as C.heveanum with support from phylogenetic analyses of LSU, ITS and TEF1 sequence data and morphological characters. Coryneumheveanum is distinct from other known taxa by its conidial measurements, number of pseudosepta and lack of a hyaline tip to the apical cell.
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Affiliation(s)
- Chanokned Senwanna
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, People's Republic of China.,World Agroforestry Centre, East and Central Asia, Heilongtan, Kunming 650201, Yunnan, People's Republic of China
| | - Rungtiwa Phookamsak
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, People's Republic of China.,World Agroforestry Centre, East and Central Asia, Heilongtan, Kunming 650201, Yunnan, People's Republic of China.,Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - E B Gareth Jones
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Ratchadawan Cheewangkoon
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
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129
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Zhou YM, Zhi JR, Ye M, Zhang ZY, Yue WB, Zou X. Lecanicilliumcauligalbarum sp. nov. (Cordycipitaceae, Hypocreales), a novel fungus isolated from a stemborer in the Yao Ren National Forest Mountain Park, Guizhou. MycoKeys 2018; 43:59-74. [PMID: 30568536 PMCID: PMC6290046 DOI: 10.3897/mycokeys.43.30203] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Accepted: 11/08/2018] [Indexed: 12/25/2022] Open
Abstract
A new species of entomopathogenic fungi, Lecanicilliumcauligalbarum, was discovered from a survey of invertebrate-associated fungi in the Yao Ren National Forest Mountain Park in China. The synnemata of this species emerged from the corpse of a stemborer (Lepidoptera), which was hidden amongst pieces of wood on the forest floor. It differs from morphologically similar Lecanicillium species mainly in its short conidiogenous cells and ellipsoid to ovoid and aseptate conidia. Phylogenetic analysis of a combined data set comprising ITS, SSU, LSU, TEF, RPB1 and RPB2 sequence data supported the inclusion of L.cauligalbarum in the Lecanicillium genus and its recognition as a distinct species.
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Affiliation(s)
- Ye-Ming Zhou
- The Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Institute of Entomology,Guizhou UniversityGuiyangChina
- Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Jun-Rui Zhi
- The Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Institute of Entomology,Guizhou UniversityGuiyangChina
| | - Mao Ye
- The Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Institute of Entomology,Guizhou UniversityGuiyangChina
| | - Zhi-Yuan Zhang
- Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
| | - Wen-Bo Yue
- The Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Institute of Entomology,Guizhou UniversityGuiyangChina
| | - Xiao Zou
- Guizhou University, Guiyang 550025, Guizhou, ChinaGuizhou UniversityGuiyangChina
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131
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Quijada L, Johnston PR, Cooper JA, Pfister DH. Overview of Phacidiales, including Aotearoamyces gen. nov. on Nothofagus. IMA Fungus 2018; 9:371-382. [PMID: 30622887 PMCID: PMC6317588 DOI: 10.5598/imafungus.2018.09.02.08] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Accepted: 10/25/2018] [Indexed: 12/24/2022] Open
Abstract
The new genus Aotearoamyces is proposed to accommodate a single species that was repeatedly collected on fallen wood in Nothofagaceae forests of New Zealand and was previously misidentified as a Claussenomyces species. This monotypic genus belongs to Tympanidaceae, a recently erected family in Phacidiales. Aotearoamyces is differentiated from other Tympanidaceae by phragmospores that do not form conidia either in or outside the asci, an exciple of textura intricata with hyphae widely spaced and strongly gelatinized (plectenchyma), and apically flexuous, partly helicoid paraphyses. The asexual morph was studied in pure culture. Phylogenetic analyses of combined SSU, ITS and LSU sequences strongly support a sister relationship between the sexually typified Aotearoamyces and the asexually typified “Collophorina” paarla characterized morphologically by forming endoconidia, a feature not found in the genetically distinct type species of Collophorina. Based on our molecular results, we place the genus Epithamnolia in the Mniaecia lineage within Phacidiales.
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Affiliation(s)
- Luis Quijada
- Department of Organismic and Evolutionary Biology, Harvard Herbarium, 22 Divinity Avenue, Cambridge MA 02138, United States of America
| | - Peter R Johnston
- Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1072, New Zealand
| | - Jerry A Cooper
- Manaaki Whenua Landcare Research, P.O. Box 69040, Lincoln 7640, New Zealand
| | - Donald H Pfister
- Department of Organismic and Evolutionary Biology, Harvard Herbarium, 22 Divinity Avenue, Cambridge MA 02138, United States of America
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133
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134
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135
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Wijayawardene NN, Pawłowska J, Letcher PM, Kirk PM, Humber RA, Schüßler A, Wrzosek M, Muszewska A, Okrasińska A, Istel Ł, Gęsiorska A, Mungai P, Lateef AA, Rajeshkumar KC, Singh RV, Radek R, Walther G, Wagner L, Walker C, Wijesundara DSA, Papizadeh M, Dolatabadi S, Shenoy BD, Tokarev YS, Lumyong S, Hyde KD. Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota). FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0409-5] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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136
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137
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Yang J, Liu JK, Hyde KD, Jones EBG, Liu ZY. New species in Dictyosporium, new combinations in Dictyocheirospora and an updated backbone tree for Dictyosporiaceae. MycoKeys 2018:83-105. [PMID: 30057482 PMCID: PMC6060225 DOI: 10.3897/mycokeys.36.27051] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Accepted: 07/01/2018] [Indexed: 11/21/2022] Open
Abstract
A survey of freshwater fungi on submerged wood in China and Thailand resulted in the collection of three species in Dictyocheirospora and four species in Dictyosporium including two new species in the latter genus. Morphological characters and phylogenetic analyses based on ITS, LSU and TEF1α sequence data support their placement in Dictyocheirospora and Dictyosporium (Dictyosporiaceae). An updated backbone tree is provided for the family Dictyosporiaceae. Descriptions and illustrations of the new taxa and re-collections are provided. Four new combinations are proposed for Dictyocheirospora.
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Affiliation(s)
- Jing Yang
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Jian-Kui Liu
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,World Agroforestry Centre, East and Central Asia, 132 Lanhei Road, Kunming, 650201, Yunnan, China
| | - E B Gareth Jones
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Huay Keaw Road, Suthep, Muang District, Chiang Mai 50200, Thailand
| | - Zuo-Yi Liu
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, China
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138
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Rebollar-Ramos D, Macías-Ruvalcaba ML, Figueroa M, Raja HA, González-Andrade M, Mata R. Additional α-glucosidase inhibitors from Malbranchea flavorosea (Leotiomycetes, Ascomycota). J Antibiot (Tokyo) 2018; 71:862-871. [DOI: 10.1038/s41429-018-0075-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 05/28/2018] [Accepted: 06/08/2018] [Indexed: 01/03/2023]
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139
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Qu J, Zhou Y, Yu J, Zhang J, Han Y, Zou X. Estimated divergence times of Hirsutella (asexual morphs) in Ophiocordyceps provides insight into evolution of phialide structure. BMC Evol Biol 2018; 18:111. [PMID: 30005592 DOI: 10.1186/s12862-018-1223-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Accepted: 06/27/2018] [Indexed: 01/30/2023] Open
Abstract
BACKGROUND Hirsutella Pat genus, the asexual morphs of the Ophiocordyceps Sung, is globally distributed entomopathogenic fungi, which infect a variety of arthropods, mites and nematodes. The fungal species also have shown potential application in the field of biological control, bio-medicine and food development. Although these fungi are synonymized under Ophiocordyceps, formal taxonomic assignments remain necessary for classification of species in Hirsutella. However, due to the heterogeneity and complexity of Hirsutella genus, more detailed taxonomic and phylogenetic analyses are required to address the following subjects: (1) the relationships between the phialide morphological characteristics and phylogenetic information of Hirsutella with asexual morphs, (2) the origin and evolution of the phialide structure, and (3) host specificity and fungal pathogenicity. RESULTS Five typical phialide structures are summarized, in which the variation in phialide characteristics overlaps well with phylogenetic information. A new member of the special twisted neck clade in the Hirsutella-like group, Ophiocordyceps retorta, was reported based on these analyses. The molecular clock calibration analysis based on one fossil record revealed that Hirsutella (asexual morph) species originated from a common ancestor approximately 102 million years ago (Mya) (Early Cretaceous, Lower Albian) and then resolved into two major lineages. One lineage was typically phialidic, which was a larger shape, including H. guyana, H. nodulosa and H. sinensis clades (86.9 Mya, 95% highest posterior density (HPD): 69.1-101.4 Mya). Another main lineage of the phialides was more diversified and smaller than the former, which included H. citriformis and H. thompsonii clades (71.9 Mya, 95% HPD: 41.8-99.6 Mya). CONCLUSIONS Our results showed that certain phialide characteristics of Hirsutella were phylogenetically informative for two groups of taxa. The differentiation of the phialides structures in the major clades demonstrated a clear evolutionary path of Hirsutella (asexual morph) species, which exhibited two trends depending on the host size. Fungi in one of the groups displayed elongated conidiogenous cells with increased complexity of auxiliary structures from the mycelia. The species in another group reduced the volume of phialides and spores, which might be due to an energy-efficient strategy. These results suggested that a common origin allowed for diversification of given clades into separate niches. The distinct parallel evolutionary path combined with the specific phialides structure might result in the host specificity of Hirsutella (asexual morphs). A direct relationship between Hirsutella (asexual morphs) and the Cretaceous-Tertiary extinction was not found, which suggested that the diversity of phialides is more likely to be caused by long-term environmental adaptation and evolution rather than dramatic extinction events. This evolutionary result might correspond to the background of important biological and geological events in the late Cretaceous occurring near the divergence times of Hirsutella (asexual morphs).
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Affiliation(s)
- Jiaojiao Qu
- Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, 550025, China.,Institute of Fungus Resources, College of Life Sciences, Guizhou University, Guiyang, 550025, China
| | - Yeming Zhou
- Institute of Entomology, Guizhou University, Guiyang, 550025, China
| | - Jianping Yu
- Institute of Fungus Resources, College of Life Sciences, Guizhou University, Guiyang, 550025, China
| | - Jian Zhang
- Institute of Fungus Resources, College of Life Sciences, Guizhou University, Guiyang, 550025, China
| | - Yanfeng Han
- Institute of Fungus Resources, College of Life Sciences, Guizhou University, Guiyang, 550025, China
| | - Xiao Zou
- Institute of Fungus Resources, College of Life Sciences, Guizhou University, Guiyang, 550025, China.
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140
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Guterres DC, Galvão-Elias S, de Souza BCP, Pinho DB, dos Santos MDDM, Miller RNG, Dianese JC. Taxonomy, phylogeny, and divergence time estimation for Apiosphaeria guaranitica, a Neotropical parasite on bignoniaceous hosts. Mycologia 2018; 110:526-545. [DOI: 10.1080/00275514.2018.1465774] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Debora Cervieri Guterres
- Departamento de Fitopatologia, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
| | - Samuel Galvão-Elias
- Departamento de Biologia Celular-Biologia Microbiana, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
| | | | - Danilo Batista Pinho
- Departamento de Fitopatologia, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
| | | | - Robert Neil Gerard Miller
- Departamento de Fitopatologia, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
- Departamento de Biologia Celular-Biologia Microbiana, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
| | - José Carmine Dianese
- Departamento de Fitopatologia, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
- Departamento de Biologia Celular-Biologia Microbiana, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
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141
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Zeng XY, Hongsanan S, Hyde KD, Putarak C, Wen TC. Translucidithyrium thailandicum gen. et sp. nov.: a new genus in Phaeothecoidiellaceae. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1419-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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142
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Huang SK, Jeewon R, Hyde KD, Bhat DJ, Wen TC. Novel Taxa within Nectriaceae:Cosmosporellagen. nov. andAquanectriasp. nov. from Freshwater Habitats in China. CRYPTOGAMIE MYCOL 2018. [DOI: 10.7872/crym/v39.iss2.2018.169] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Shi-Ke Huang
- Engineering and Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizohu University, Guiyang 550025, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, P.R. China
| | - Rajesh Jeewon
- Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - D. Jayarama Bhat
- Azad Housing Society, No. 128/1-J, Curca, P.O. Goa Velha 403108, India
- Formerly, Department of Botany, Goa University, Goa, 403206, India
| | - Ting-Chi Wen
- Engineering and Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizohu University, Guiyang 550025, China
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143
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Liu NG, Lin CG, Liu JK, Samarakoon MC, Hongsanan S, Bhat DJ, Hyde KD, McKenzie EHC, Jumpathong J. Lentimurisporaceae, a New Pleosporalean Family with Divergence Times Estimates. CRYPTOGAMIE MYCOL 2018. [DOI: 10.7872/crym/v39.iss2.2018.259] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ning-Guo Liu
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultral Sciences, Guiyang 550006, China
- Faculty of Agriculture, Natural Resources and Envinonment, Naresuan University, Phitsanulok 65000, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Chuan-Gen Lin
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Jian-Kui Liu
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultral Sciences, Guiyang 550006, China
| | - Milan C. Samarakoon
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - D. Jayarama Bhat
- Azad Housing Society, No. 128/1-J, Curca, P.O. Goa Velha 403108, India
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | | | - Juangjun Jumpathong
- Faculty of Agriculture, Natural Resources and Envinonment, Naresuan University, Phitsanulok 65000, Thailand
- Center for Agricultural Biotechnology, Naresuan University, Phitsanulok, 65000, Thailand
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144
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Ekanayaka AH, Hyde KD, Jones EBG, Zhao Q. Taxonomy and phylogeny of operculate discomycetes: Pezizomycetes. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0402-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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145
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Phukhamsakda C, Bhat DJ, Hongsanan S, Xu JC, Stadler M, Hyde KD. Two novel species of Neoaquastroma (Parabambusicolaceae, Pleosporales) with their phoma-like asexual morphs. MycoKeys 2018:47-62. [PMID: 29861654 PMCID: PMC5976676 DOI: 10.3897/mycokeys.34.25124] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 05/07/2018] [Indexed: 11/23/2022] Open
Abstract
The monotypic genus Neoaquastroma (Parabambusicolaceae, Pleosporales) was introduced for a microfungus isolated from a collection of dried stems of a dicotyledonous plant in Thailand. In this paper, we introduce two novel species, N.bauhiniae and N.krabiense, in this genus. Their asexual morphs comprise conidiomata with aseptate and hyaline conidia. Neoaquastromabauhiniae has ascomata, asci and ascospores that are smaller than those of N.krabiense. Descriptions and illustrations of N.bauhiniae and N.krabiense are provided and the two species compared with the type species of the genus, N.guttulatum. Evidence for the introduction of the new taxa is also provided from phylogenetic analysis of a combined dataset of partial LSU, SSU, ITS and tef1 sequence data. The phylogenetic analysis revealed a distinct lineage for N.bauhiniae and N.krabiense within the family Parabambusicolaceae.
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Affiliation(s)
- Chayanard Phukhamsakda
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China
| | - Darbhe J Bhat
- Formerly, Department of Botany, Goa University, Goa, India; No. 128/1-J, Azad Housing Society, Curca, Goa Velha, India
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Jian-Chu Xu
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,Centre of Mountain Ecosystem Studies, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China
| | - Marc Stadler
- Department of Microbial Drugs, Helmholtz Centre for Infection Research, Braunschweig, Germany
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China
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146
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A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land). Sci Rep 2018; 8:6582. [PMID: 29700429 PMCID: PMC5919928 DOI: 10.1038/s41598-018-25079-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Accepted: 04/11/2018] [Indexed: 02/03/2023] Open
Abstract
Brines are hypersaline solutions which have been found within the Antarctic permafrost from the Tarn Flat area (Northern Victoria Land). Here, an investigation on the possible presence and diversity of fungal life within those peculiar ecosystems has been carried out for the first time. Brines samples were collected at 4- and 5-meter depths (TF1 and TF2, respectively), from two brines separated by a thin ice layer. The samples were analyzed via Illumina MiSeq targeting the ITS region specific for both yeasts and filamentous fungi. An unexpected high alpha diversity was found. Beta diversity analysis revealed that the two brines were inhabited by two phylogenetically diverse fungal communities (Unifrac value: 0.56, p value < 0.01; Martin’s P-test p-value < 0.001) characterized by several specialist taxa. The most abundant fungal genera were Candida sp., Leucosporidium sp., Naganishia sp. and Sporobolomyces sp. in TF1, and Leucosporidium sp., Malassezia sp., Naganishia sp. and Sporobolomyces sp. in TF2. A few hypotheses on such differentiation have been done: i) the different chemical and physical composition of the brines; ii) the presence in situ of a thin layer of ice, acting as a physical barrier; and iii) the diverse geological origin of the brines.
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147
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Tibpromma S, Hyde KD, Bhat JD, Mortimer PE, Xu J, Promputtha I, Doilom M, Yang JB, Tang AMC, Karunarathna SC. Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand. MycoKeys 2018. [DOI: 10.3897/mycokeys.32.23670] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
The authors established the taxonomic status of endophytic fungi associated with leaves of Pandanaceae collected from southern Thailand. Morphotypes were initially identified based on their characteristics in culture and species level identification was done based on both morphological characteristics and phylogenetic analyses of DNA sequence data. Twenty-two isolates from healthy leaves were categorised into eight morphotypes. Appropriate universal primers were used to amplify specific gene regions and phylogenetic analyses were performed to identify these endophytes and established relationships with extant fungi. The authors identified both ascomycete and basidiomycete species, including one new genus, seven new species and nine known species. Morphological descriptions, colour plates and phylogenies are given for each taxon.
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148
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Tibpromma S, Hyde KD, Bhat JD, Mortimer PE, Xu J, Promputtha I, Doilom M, Yang JB, Tang AMC, Karunarathna SC. Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand. MycoKeys 2018; 33:25-67. [PMID: 30532625 PMCID: PMC6283267 DOI: 10.3897/mycokeys.33.23670] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 03/16/2018] [Indexed: 02/01/2023] Open
Abstract
The authors established the taxonomic status of endophytic fungi associated with leaves of Pandanaceae collected from southern Thailand. Morphotypes were initially identified based on their characteristics in culture and species level identification was done based on both morphological characteristics and phylogenetic analyses of DNA sequence data. Twenty-two isolates from healthy leaves were categorised into eight morphotypes. Appropriate universal primers were used to amplify specific gene regions and phylogenetic analyses were performed to identify these endophytes and established relationships with extant fungi. The authors identified both ascomycete and basidiomycete species, including one new genus, seven new species and nine known species. Morphological descriptions, colour plates and phylogenies are given for each taxon.
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Affiliation(s)
- Saowaluck Tibpromma
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, People’s Republic of China
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Kevin D. Hyde
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, People’s Republic of China
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Jayarama D. Bhat
- Formerly, Department of Botany, Goa University, Taleigão, Goa, India
- No. 128/1-J, Azad Housing Society, Curca, Goa Velha, India
| | - Peter E. Mortimer
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, People’s Republic of China
| | - Jianchu Xu
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, People’s Republic of China
| | - Itthayakorn Promputtha
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand
- Environmental Science Research Centre, Faculty of Science, Chiang Mai University, 50200, Thailand
| | - Mingkwan Doilom
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, People’s Republic of China
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Jun-Bo Yang
- Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China
| | - Alvin M. C. Tang
- Division of Applied Science, College of International Education, The Hong Kong Baptist University, Hong Kong SAR, China
| | - Samantha C. Karunarathna
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, People’s Republic of China
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
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149
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Devadatha B, Sarma VV, Jeewon R, Wanasinghe DN, Hyde KD, Gareth Jones EB. Thyridariella, a novel marine fungal genus from India: morphological characterization and phylogeny inferred from multigene DNA sequence analyses. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1387-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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150
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Kušan I, Matočec N, Jadan M, Tkalčec Z, Mešić A. An overview of the genus Coprotus (Pezizales, Ascomycota) with notes on the type species and description of C. epithecioides sp. nov. MycoKeys 2018:15-47. [PMID: 29559824 PMCID: PMC5804121 DOI: 10.3897/mycokeys.29.22978] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Accepted: 12/23/2018] [Indexed: 11/12/2022] Open
Abstract
In a mycological research performed in the Sjeverni Velebit National Park, Croatia, a new species of Coprotus was discovered, described here as C.epithecioides. Along with the microscopic examination, phylogenetic analysis of the type material, based on ITS and LSU sequences, was performed in order to evaluate its relationship with the type species, C.sexdecimsporus. The type species was sequenced in this study for the first time, providing ITS and LSU sequences from two separate collections which displayed differences in macroscopic characters and content of paraphyses. An extended description of C.sexdecimsporus based on Croatian material is also provided. A worldwide identification key to the species assigned to the genus Coprotus is presented, along with a species overview, containing a data matrix. The phylogenetic position of Coprotus in the Boubovia-Coprotus clade within Pyronemataceae s.l. is discussed. Coprotussexdecimsporus is also reported here as new to the Croatian mycobiota.
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Affiliation(s)
- Ivana Kušan
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - Neven Matočec
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - Margita Jadan
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - Zdenko Tkalčec
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - Armin Mešić
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
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