Mechanism of nitrogen fixation by nitrogenase: the next stage

Li-Mediated Electrochemical Nitrogen Fixation: Key Advances and Future Perspectives

The electrochemical nitrogen reduction reaction holds great potential for ammonia production using electricity generated from renewable energy sources and is sustainable. The low solubility of nitrogen in aqueous media, poor kinetics, and intrinsic competition by the hydrogen evolution reaction result in meager ammonia production rates. Attributing measured ammonia as a valid product, not an impurity, is challenging despite rigorous analytical experimentation. In this regard, Li-mediated electrochemical nitrogen reduction is a proven method providing significant ammonia yields. Herein, fundamental advances and insights into the Li-mediated strategy are summarized, emphasizing the role of lithium, reaction parameters, cell designs, and mechanistic evaluation. Challenges and perspectives are presented to highlight the prospects of this strategy as a continuous, stable, and modular approach toward sustainable ammonia production.

Dinitrogen cleavage by a dinuclear uranium(iii) complex

Understanding the role of multimetallic cooperativity and of alkali ion-binding in the second coordination sphere is important for the design of complexes that can promote dinitrogen (N2) cleavage and functionalization. Herein, we compare the reaction products and mechanism of N2 reduction of the previously reported K2-bound dinuclear uranium(iii) complex, [K2{[UIII(OSi(OtBu)3)3]2(μ-O)}], B, with those of the analogous dinuclear uranium(iii) complexes, [K(2.2.2-cryptand)][K{UIII(OSi(OtBu)3)3}2(μ-O)], 1, and [K(2.2.2-cryptand)]2[{UIII(OSi(OtBu)3)3}2(μ-O)], 2, where one or two K+ ions have been removed from the second coordination sphere by addition of 2.2.2-cryptand. In this study, we found that the complete removal of the K+ ions from the inner coordination sphere leads to an enhanced reducing ability, as confirmed by cyclic voltammetry studies, of the resulting complex 2, and yields two new species upon N2 addition, namely the U(iii)/U(iv) complex, [K(2.2.2-cryptand)][{UIII(OSi(OtBu)3)3}(μ-O){UIV(OSi(OtBu)3)3}], 3, and the N2 cleavage product, the bis-nitride, terminal-oxo complex, [K(2.2.2-cryptand)]2[{UV(OSi(OtBu)3)3}(μ-N)2{UVI(OSi(OtBu)3)2(κ-O)}], 4. We propose that the formation of these two products involves a tetranuclear uranium-N2 intermediate that can only form in the absence of coordinated alkali ions, resulting in a six-electron transfer and cleavage of N2, demonstrating the possibility of a three-electron transfer from U(iii) to N2. These results give an insight into the relationship between alkali ion binding modes, multimetallic cooperativity and reactivity, and demonstrate how these parameters can be tuned to cleave and functionalize N2.

High Affinity Electrostatic Interactions Support the Formation of CdS Quantum Dot:Nitrogenase MoFe Protein Complexes

Nitrogenase MoFe protein can be coupled with CdS nanocrystals (NCs) to enable photocatalytic N2 reduction. The nature of interactions that support complex formation is of paramount importance in intermolecular electron transfer that supports catalysis. In this work we have employed microscale thermophoresis to examine binding interactions between 3-mercaptopropionate capped CdS quantum dots (QDs) and MoFe protein over a range of QD diameters (3.4-4.3 nm). The results indicate that the interactions are largely electrostatic, with the strength of interactions similar to that observed for the physiological electron donor. In addition, the strength of interactions is sensitive to the QD diameter, and the binding interactions are significantly stronger for QDs with smaller diameters. The ability to quantitatively assess NC protein interactions in biohybrid systems supports strategies for understanding properties and reaction parameters that are important for obtaining optimal rates of catalysis in biohybrid systems.

Basal Plane-Activated Boron-Doped MoS2 Nanosheets for Efficient Electrochemical Ammonia Synthesis

Under the dual pressure of energy crisis and environmental pollution, ammonia (NH3 ) is an indispensable chemical product in the global economy. The electrocatalytic synthesis of NH3 directly from nitrogen and water using renewable electricity has become one of the most attractive and important topics. Basal plane-activated boron-doped MoS2 nanosheets (B-MoS2 ) as a non-noble metal catalyst with excellent performance for N2 electroreduction are synthesized by a facile one-step hydrothermal method. In 0.1 m Na2 SO4 solution, MoS2 nanosheets doped with 300 mg boric acid (B-MoS2 -300) give rise to a good ammonia yield rate of 75.77 μg h-1  mg-1 cat. at -0.75 V vs. RHE, and an excellent Faradaic efficiency of 40.11 % at -0.60 V vs. RHE. In addition, the B-MoS2 -300 nanosheets show good selectivity and chemical stability, and no hydrazine (N2 H4 ) by-product is generated during the reaction. 15 N isotopic labeling confirms that nitrogen in produced ammonia originates from N2 in the electrolyte. On the one hand, the high conductivity of MoS2 guarantees guarantees a high electron transfer rate from nitrogen to ammonia; on the other hand, the successful incorporation of heteroatom B enlarges the interlayer spacing of MoS2 , and the B atom can act as an active site for basal plane activation, providing more active sites for the nitrogen reduction reaction (NRR). Density functional theory calculations show that the doping of B activates the base plane of 1T-MoS2 , which makes the adsorption of N2 on the base plane easier and promotes the NRR.

Utilizing Atmospheric Carbon Dioxide and Sunlight in Graphene Quantum Dot-Based Nano-Biohybrid Organisms for Making Carbon-Negative and Carbon-Neutral Products

Increasing emissions of greenhouse gases compounded with legacy emissions in the earth's atmosphere poses an existential threat to human survival. One potential solution is creating carbon-negative and carbon-neutral materials, specifically for commodities used heavily throughout the globe, using a low-cost, scalable, and technologically and economically feasible process that can be deployed without the need for extensive infrastructure or skill requirements. Here, we demonstrate that nickel-functionalized graphene quantum dots (GQDs) can effectively couple to nonphotosynthetic bacteria at a cellular, molecular, and optoelectronic level, creating nanobiohybrid organisms (nanorgs) that enable the utilization of sunlight to convert carbon dioxide, air, and water into high-value-added chemicals such as ammonia (NH3), ethylene (C2H4), isopropanol (IPA), 2,3-butanediol (BDO), C11-C15 methyl ketones (MKs), and degradable bioplastics poly hydroxybutyrate (PHB) with high efficiency and selectivity. We demonstrate a high turnover number (TON) of up to 108 (mol of product per mol of cells), ease of application, facile scalability (demonstrated using a 30 L tank in a lab), and sustainable generation of carbon nanomaterials from recovered bacteria for creating nanorgs without the use of any toxic chemicals or materials. These findings can have important implications for the further development of sustainable processes for making carbon-negative materials using nanorgs.

Fe protein docking transduces conformational changes to MoFe nitrogenase active site in a nucleotide-dependent manner

The reduction of dinitrogen to ammonia catalyzed by nitrogenase involves a complex series of events, including ATP hydrolysis, electron transfer, and activation of metal clusters for N2 reduction. Early evidence shows that an essential part of the mechanism involves transducing information between the nitrogenase component proteins through conformational dynamics. Here, millisecond time-resolved hydrogen-deuterium exchange mass spectrometry was used to unravel peptide-level protein motion on the time scale of catalysis of Mo-dependent nitrogenase from Azotobacter vinelandii. Normal mode analysis calculations complemented this data, providing insights into the specific signal transduction pathways that relay information across protein interfaces at distances spanning 100 Å. Together, these results show that conformational changes induced by protein docking are rapidly transduced to the active site, suggesting a specific mechanism for activating the metal cofactor in the enzyme active site.

Double-single-atom MoCu-embedded porous carbons boost the electrocatalytic N2 reduction reaction

NH3 is an essential ingredient of chemical, fertilizer, and energy storage products. Industrial nitrogen fixation consumes an enormous amount of energy, which is counter to the concept of carbon neutrality, hence eNRR ought to be implemented as a clean alternative. Herein, we propose a double-single-atom MoCu-embedded porous carbon material derived from uio-66 (MoCu@C) by plasma-enhanced chemical vapor deposition (PECVD) to boost eNRR capabilities, with an NH3 yield rate of 52.4 μg h-1 gcat.-1 and a faradaic efficiency (FE) of 27.4%. Advanced XANES shows that the Mo active site receives electrons from Cu, modifies the electronic structure of the Mo active site and enhances N2 adsorption activation. The invention of rational MoCu double-single-atom materials and the utilization of effective eNRR approaches furnish the necessary building blocks for the fundamental study and practical application of Mo-based materials.

Iron Homeostasis in Azotobacter vinelandii

Iron is an essential nutrient for all life forms. Specialized mechanisms exist in bacteria to ensure iron uptake and its delivery to key enzymes within the cell, while preventing toxicity. Iron uptake and exchange networks must adapt to the different environmental conditions, particularly those that require the biosynthesis of multiple iron proteins, such as nitrogen fixation. In this review, we outline the mechanisms that the model diazotrophic bacterium Azotobacter vinelandii uses to ensure iron nutrition and how it adapts Fe metabolism to diazotrophic growth.

Dinitrogen Activation and Functionalization Affording Chromium Diazenido and Hydrazido Complexes

ConspectusThe activation and functionalization of N2 to form nitrogen-element bonds have long posed challenges to industrial, biological, and synthetic chemists. The first transition-metal dinitrogen complex prepared by Allen and Senoff in 1965 provoked researchers to explore homogeneous N2 fixation. Despite intensive research in the last six decades, efficient and quantitative conversion of N2 to diazenido and hydrazido species remains problematic. Relative to a plethora of reactions to generate N2 complexes, their functionalization reactions are rather rare, and the yields are often unsatisfactory, emphasizing the need for systematic investigations of the reaction mechanisms.In this Account, we summarize our recent work on the synthesis, spectroscopic features, electronic structures, and reactivities of several Cr-N2 complexes. Initially, a series of dinuclear and trinuclear Cr(I)-N2 complexes bearing cyclopentadienyl-phosphine ligands were accessed. However, they cannot achieve N2 functionalization but undergo oxidative addition reactions with phenylsilane, azobenzene, and other unsaturated organic compounds at the low-valent Cr(I) centers rather than at the N2 unit. Further reduction of these Cr(I) complexes leads to the formation of more activated mononuclear Cr(0) bis-dinitrogen complexes. Remarkably, silylation of the cyclopentadienyl-phosphine Cr(0)-N2 complex with Me3SiCl afforded the first Cr hydrazido complex. This process follows the distal pathway to functionalize the Nβ atom twice, yielding an end-on η1-hydrazido complex, Cr(III)═N-N(SiMe3)2. In contrast, upon substitution of the phosphine ligand in the Cr(0)-N2 complex with a N-heterocyclic carbene (NHC) ligand, the corresponding reaction with Me3SiCl proceeds via the alternating pathway; the silylation occurs at both Nα and Nβ atoms and generates a side-on η2-hydrazido complex, Cr(III)(η2-Me3SiN-NSiMe3). Both silylation reactions are inevitably accompanied by the formation of Cr(III) hydrazido complexes and Cr(II) chlorides with a 2:1 ratio. These processes exhibit a peculiar '3-4-2-1' stoichiometry (i.e., treating 3 equiv of Cr(0)-N2 complexes with 4 equiv of Me3SiCl yields 2 equiv of Cr(III) disilyl-hydrazido complexes and 1 equiv of Cr(II) chloride). Upon replacing the monodentate phosphine and/or NHC ligand with a bisphosphine ligand, a monodinitrogen Cr(0) complex, instead of the bis-dinitrogen Cr(0) complexes, is obtained; consequently, the silylation reactions progress via the normal two-electron route, which passes through Cr(II)-N═N-R diazenido species as an intermediate and furnishes [Cr(IV)═N-NR2]+ hydrazido as the final products. More importantly, this type of Cr(0)-N2 complex can be not only silylated but also protonated and alkylated proficiently. All of the second-order reaction rates of the first and second transformations are determined along with the lifetimes of the intervening diazenido species. Based on these findings, we have successfully carried out nearly quantitative preparations of the Cr(IV) hydrazido species with unmixed or hybrid substituents.The studies of Cr-N2 systems provide effective approaches for the activation and functionalization of N2, deepening the understanding of N2 electrophilic attack. We hope that this Account will inspire more discoveries related to the transformation of gaseous N2 to high-value-added nitrogen-containing organic compounds.

Electronic Structure of the Low-Lying States of the Triatomic MoS2 Molecule: The Building Block of 2D MoS2

Molybdenum disulfide (MoS2 ) is the building component of 1D-monolayer, 2D-layered nanosheets and nanotubes having many applications in industry, and it is detected in various molecular systems observed in nature. Here, the electronic structure and the chemical bonding of sixteen low-lying states of the triatomic MoS2 molecule are investigated, while the connection of the chemical bonding of the isolated MoS2 molecule to the relevant 2D-MoS2 , is emphasized. The MoS2 molecule is studied via DFT and multireference methodologies, i. e., MRCISD(+Q)/aug-cc-pVQZ(-PP)Mo . The ground state,X ˜ ${\tilde{X}}$ 3 B1 , is bent (Mo-S=2.133 Å and ϕ(SMoS)=115.9°) with a dissociation energy to atomic products of 194.7 kcal/mol at MRCISD+Q. In the ground and in the first excited state a double bond is formed between Mo and each S atom, i. e.,a 1 2 a 1 2 b 2 2 a 2 2 ${{{\rm a}}_{1}^{2}{{\rm a}}_{1}^{2}{{\rm b}}_{2}^{2}{{\rm a}}_{2}^{2}}$ . These two states differ in which d electrons of Mo are unpaired. The Mo-S bond distances of the calculated states range from 2.108 to 2.505 Å, the SMoS angles range from 104.1 to 180.0°, and the Mo-S bonds are single or double. Potential energy curves and surfaces have been plotted for theX ˜ ${\tilde{X}}$ 3 B1 , 5 A1 and 5 B1 states. Finally, the low-lying septet states of the triatomic molecule are involved in the material as a building block, explaining the variety of its morphologies.

Antioxidant CeO2 doped with carbon dots enhance ammonia production by an electroactive Azospirillum humicireducens SgZ-5T

Microbial nitrogen fixation is a fundamental process in the nitrogen cycle, providing a continuous supply of biologically available nitrogen essential for life. In this study, we combined cerium oxide-doped carbon dots (CeO2/CDs) with electroactive nitrogen-fixing bacterium Azospirillum humicireducens SgZ-5T to enhance nitrogen fixation through ammonium production. Our research demonstrates that treatment of SgZ-5T cells with CeO2/CDs (0.2 mg mL-1) resulted in a 265.70% increase in ammonium production compared to SgZ-5T cells alone. CeO2/CDs facilitate electron transfer in the biocatalytic process, thereby enhancing nitrogenase activity. Additionally, CeO2/CDs reduce the concentration of reactive oxygen species in SgZ-5T cells, leading to increased ammonium production. The upregulation of nifD, nifH and nifK gene expression upon incorporation of CeO2/CDs (0.2 mg mL-1) into SgZ-5T cells supports this observation. Our findings not only provide an economical and environmentally friendly approach to enhance biological nitrogen fixation but also hold potential for alleviating nitrogen fertilizer scarcity.

Enhancement of Reactivity of a RuIV-Oxo Complex in Oxygen-Atom-Transfer Catalysis by Hydrogen-Bonding with Amide Moieties in the Second Coordination Sphere

We have synthesized and characterized a RuII-OH2 complex (2), which has a pentadentate ligand with two pivalamide groups as bulky hydrogen-bonding (HB) moieties in the second coordination sphere (SCS). Complex 2 exhibits a coordination equilibrium through the coordination of one of the pivalamide oxygens to the Ru center in water, affording a η6-coordinated complex, 3. A detailed thermodynamic analysis of the coordination equilibrium revealed that the formation of 3 from 2 is entropy-driven owing to the dissociation of the axial aqua ligand in 2. Complex 2 was oxidized by a CeIV salt to produce the corresponding RuIII(OH) complex (5), which was characterized crystallographically. In the crystal structure of 5, hydrogen bonds are formed among the NH groups of the pivalamide moieties and the oxygen atom of the hydroxo ligand. Further 1e--oxidation of 5 yields the corresponding RuIV(O) complex, 6, which has intramolecular HB of the oxo ligand with two amide N-H protons. Additionally, the RuIII(OH) complex, 5, exhibits disproportionation to the corresponding RuIV(O) complex, 6, and a mixture of the RuII complexes, 2 and 3, in an acidic aqueous solution. We investigated the oxidation of a phenol derivative using complex 6 as the active species and clarified the switch of the reaction mechanism from hydrogen-atom transfer at pH 2.5 to electron transfer, followed by proton transfer at pH 1.0. Additionally, the intramolecular HB in 6 exerts enhancing effects on oxygen-atom transfer reactions from 6 to alkenes such as cyclohexene and its water-soluble derivative to afford the corresponding epoxides, relative to the corresponding RuIV(O) complex (6') lacking the HB moieties in the SCS.

Light-driven Transformation of Carbon Monoxide into Hydrocarbons using CdS@ZnS : VFe Protein Biohybrids

Enzymatic Fisher-Tropsch (FT) process catalyzed by vanadium (V)-nitrogenase can convert carbon monoxide (CO) to longer-chain hydrocarbons (>C2) under ambient conditions, although this process requires high-cost reducing agent(s) and/or the ATP-dependent reductase as electron and energy sources. Using visible light-activated CdS@ZnS (CZS) core-shell quantum dots (QDs) as alternative reducing equivalent for the catalytic component (VFe protein) of V-nitrogenase, we first report a CZS : VFe biohybrid system that enables effective photo-enzymatic C-C coupling reactions, hydrogenating CO into hydrocarbon fuels (up to C4) that can be hardly achieved with conventional inorganic photocatalysts. Surface ligand engineering optimizes molecular and opto-electronic coupling between QDs and the VFe protein, realizing high efficiency (internal quantum yield >56 %), ATP-independent, photon-to-fuel production, achieving an electron turnover number of >900, that is 72 % compared to the natural ATP-coupled transformation of CO into hydrocarbons by V-nitrogenase. The selectivity of products can be controlled by irradiation conditions, with higher photon flux favoring (longer-chain) hydrocarbon generation. The CZS : VFe biohybrids not only can find applications in industrial CO removal for high-value-added chemical production by using the cheap, renewable solar energy, but also will inspire related research interests in understanding the molecular and electronic processes in photo-biocatalytic systems.

Proton transfer kinetics of transition metal hydride complexes and implications for fuel-forming reactions

Proton transfer reactions involving transition metal hydride complexes are prevalent in a number of catalytic fuel-forming reactions, where the proton transfer kinetics to or from the metal center can have significant impacts on the efficiency, selectivity, and stability associated with the catalytic cycle. This review correlates the often slow proton transfer rate constants of transition metal hydride complexes to their electronic and structural descriptors and provides perspective on how to exploit these parameters to control proton transfer kinetics to and from the metal center. A toolbox of techniques for experimental determination of proton transfer rate constants is discussed, and case studies where proton transfer rate constant determination informs fuel-forming reactions are highlighted. Opportunities for extending proton transfer kinetic measurements to additional systems are presented, and the importance of synergizing the thermodynamics and kinetics of proton transfer involving transition metal hydride complexes is emphasized.

Fertilization of Microbial Composts: A Technology for Improving Stress Resilience in Plants

Microbial compost plays a crucial role in improving soil health, soil fertility, and plant biomass. These biofertilizers, based on microorganisms, offer numerous benefits such as enhanced nutrient acquisition (N, P, and K), production of hydrogen cyanide (HCN), and control of pathogens through induced systematic resistance. Additionally, they promote the production of phytohormones, siderophore, vitamins, protective enzymes, and antibiotics, further contributing to soil sustainability and optimal agricultural productivity. The escalating generation of organic waste from farm operations poses significant threats to the environment and soil fertility. Simultaneously, the excessive utilization of chemical fertilizers to achieve high crop yields results in detrimental impacts on soil structure and fertility. To address these challenges, a sustainable agriculture system that ensures enhanced soil fertility and minimal ecological impact is imperative. Microbial composts, developed by incorporating characterized plant-growth-promoting bacteria or fungal strains into compost derived from agricultural waste, offer a promising solution. These biofertilizers, with selected microbial strains capable of thriving in compost, offer an eco-friendly, cost-effective, and sustainable alternative for agricultural practices. In this review article, we explore the potential of microbial composts as a viable strategy for improving plant growth and environmental safety. By harnessing the benefits of microorganisms in compost, we can pave the way for sustainable agriculture and foster a healthier relationship between soil, plants, and the environment.

Computational Study on the Influence of Mo/V Centers on the Electronic Structure and Hydrazine Reduction Capability of [MFe3S4]3+/2+ Complexes

[MFe3S4] cubanes have for some time been of interest for their ability to mimic the electronic and geometric structure of the active site of nitrogenase, the enzyme responsible for fixing N2 to NH3. Nitrogenase naturally occurs in three forms, with the major difference being that the metal ion present in the cofactor active site is either molybdenum (FeMoco), vanadium (FeVco), or iron. The molybdenum and vanadium versions of these cofactors are more closely studied, owing to their larger abundance and rate of catalysis. In this study, we compare free energy profiles and electronic properties of the Mo/V cubanes at various stages during the reduction of N2H4 to NH3. Our findings highlight the differences in how the complexes facilitate the reaction, in particular, vanadium's comparatively weaker ability to interact with the Fe/S network and stabilize reducing electrons prior to N-N bond cleavage, which may have implications when considering the lower efficiency of the vanadium-dependent nitrogenase.

An Experimental and Computational Investigation Rules Out Direct Nucleophilic Addition on the N2 Ligand in Manganese Dinitrogen Complex [Cp(CO)2 Mn(N2 )]

We have re-examined the reactivity of the manganese dinitrogen complex [Cp(CO)2 Mn(N2 )] (1, Cp=η5 -cyclopentadienyl, C5 H5 ) with phenylithium (PhLi). By combining experiment and density functional theory (DFT), we have found that, unlike previously reported, the direct nucleophilic attack of the carbanion onto coordinated dinitrogen does not occur. Instead, PhLi reacts with one of the CO ligands to provide an anionic acylcarbonyl dinitrogen metallate [Cp(CO)(N2 )MnCOPh]Li (3) that is stable only below -40 °C. Full characterization of 3 (including single crystal X-ray diffraction) was performed. This complex decomposes quickly above -20 °C with N2 loss to give a phenylate complex [Cp(CO)2 MnPh]Li (2). The latter compound was erroneously formulated as an anionic diazenido compound [Cp(CO)2 MnN(Ph)=N]Li in earlier reports, ruling out the claimed and so-far unique behavior of the N2 ligand in 1. DFT calculations were run to explore both the hypothesized and the experimentally verified reactivity of 1 with PhLi and are fully consistent with our results. Direct attack of a nucleophile on metal-coordinated N2 remains to be demonstrated.

A genome-scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost-benefit of nitrogen fixation

Nitrogen-fixing symbioses allow legumes to thrive in nitrogen-poor soils at the cost of diverting some photoassimilate to their microsymbionts. Effort is being made to bioengineer nitrogen fixation into nonleguminous crops. This requires a quantitative understanding of its energetic costs and the links between metabolic variations and symbiotic efficiency. A whole-plant metabolic model for soybean (Glycine max) with its associated microsymbiont Bradyrhizobium diazoefficiens was developed and applied to predict the cost-benefit of nitrogen fixation with varying soil nitrogen availability. The model predicted a nitrogen-fixation cost of c. 4.13 g C g-1 N, which when implemented into a crop scale model, translated to a grain yield reduction of 27% compared with a non-nodulating plant receiving its nitrogen from the soil. Considering the lower nitrogen content of cereals, the yield cost to a hypothetical N-fixing cereal is predicted to be less than half that of soybean. Soybean growth was predicted to be c. 5% greater when the nodule nitrogen export products were amides versus ureides. This is the first metabolic reconstruction in a tropical crop species that simulates the entire plant and nodule metabolism. Going forward, this model will serve as a tool to investigate carbon use efficiency and key mechanisms within N-fixing symbiosis in a tropical species forming determinate nodules.

Core Endophytic Bacteria and Their Roles in the Coralloid Roots of Cultivated Cycas revoluta (Cycadaceae)

As a gymnosperm group, cycads are known for their ancient origin and specialized coralloid root, which can be used as an ideal system to explore the interaction between host and associated microorganisms. Previous studies have revealed that some nitrogen-fixing cyanobacteria contribute greatly to the composition of the endophytic microorganisms in cycad coralloid roots. However, the roles of host and environment in shaping the composition of endophytic bacteria during the recruitment process remain unclear. Here, we determined the diversity, composition, and function prediction of endophytic bacteria from the coralloid roots of a widely cultivated cycad, Cycas revoluta Thunb. Using next-generation sequencing techniques, we comprehensively investigated the diversity and community structure of the bacteria in coralloid roots and bulk soils sampled from 11 sites in China, aiming to explore the variations in core endophytic bacteria and to predict their potential functions. We found a higher microbe diversity in bulk soils than in coralloid roots. Meanwhile, there was no significant difference in the diversity and composition of endophytic bacteria across different localities, and the same result was found after removing cyanobacteria. Desmonostoc was the most dominant in coralloid roots, followed by Nostoc, yet these two cyanobacteria were not shared by all samples. Rhodococcus, Edaphobacter, Niastella, Nordella, SH-PL14, and Virgisporangium were defined as the core microorganisms in coralloid roots. A function prediction analysis revealed that endophytic bacteria majorly participated in the plant uptake of phosphorus and metal ions and in disease resistance. These results indicate that the community composition of the bacteria in coralloid roots is affected by both the host and environment, in which the host is more decisive. Despite the very small proportion of core microbes, their interactions are significant and likely contribute to functions related to host survival. Our study contributes to an understanding of microbial diversity and composition in cycads, and it expands the knowledge on the association between hosts and symbiotic microbes.

Transparent Colloids of Detonation Nanodiamond: Physical, Chemical and Biological Properties

Aqueous suspensions (colloids) containing detonation nano-diamond (DND) feature in most applications of DND and are an indispensable stage of its production; therefore, the interaction of DND with water is actively studied. However, insufficient attention has been paid to the unique physico-chemical and biological properties of transparent colloids with low DND content (≤0.1%), which are the subject of this review. Thus, such colloids possess giant dielectric permittivity which shows peculiar temperature dependence, as well as quasi-periodic fluctuations during slow evaporation or dilution. In these colloids, DND interacts with water and air to form cottonwool-like fibers comprising living micro-organisms (fungi and bacteria) and DND particles, with elevated nitrogen content due to fixation of atmospheric N2. Prolonged contact between these solutions and air lead to the formation of ammonium nitrate, sometimes forming macroscopic crystals. The latter was also formed during prolonged oxidation of fungi in aqueous DND colloids. The possible mechanism of N2 fixation is discussed, which can be attributable to the high reactivity of DND.

The mechanism for N2 activation in the E4 - state of nitrogenase

Nitrogenases take nitrogen from the air and reduce it to ammonia. It has long been known that N2 becomes activated after four reductions in the catalytic cycle, in the E4 state. Several mechanisms for the activation have been suggested. In the present study a previous mechanism has been revised based on recent experimental findings. In the present mechanism N2H2 is formed in E4. As in the previously suggested mechanism, there are four initial reductions before catalysis (the A-states), after which a sulfide is released and the first state in catalysis (E0) is formed. In E4, N2 becomes bound and protonated in the Fe1, Fe2, Fe4 region, in which the hydrides have left two electrons. The rate-limiting step is the formation of N2H by a hydrogen atom transfer from Cys275 to N2 bound to Fe4, concerted with an additional electron transfer from the cofactor. The mechanism fulfills all requirements set by experiments. The activation of N2 is preceded by a formation of H2 from two hydrides, the carbide is kinetically hindered from being protonated, the E4 state is reversible. An important aspect is the presence of a water molecule in the Fe2, Fe6 region. The non-allowed formations of H2 from a hydride and a proton have been investigated and found to have higher barriers than the allowed formation of H2 from two hydrides.

An Iron-Sulfur Cluster with a Highly Pyramidalized Three-Coordinate Iron Center and a Negligible Affinity for Dinitrogen

Attempts to generate open coordination sites for N2 binding at synthetic Fe-S clusters often instead result in cluster oligomerization. Recently, it was shown for Mo-Fe-S clusters that such oligomerization reactions can be prevented through the use of sterically protective supporting ligands, thereby enabling N2 complex formation. Here, this strategy is extended to Fe-only Fe-S clusters. One-electron reduction of (IMes)3Fe4S4Cl (IMes = 1,3-dimesitylimidazol-2-ylidene) forms the transiently stable edge-bridged double cubane (IMes)6Fe8S8, which loses two IMes ligands to form the face-bridged double-cubane, (IMes)4Fe8S8. The finding that the three supporting IMes ligands do not confer sufficient protection to curtail cluster oligomerization prompted the design of a new N-heterocyclic carbene, SIArMe,iPr (1,3-bis(3,5-diisopropyl-2,6-dimethylphenyl)-2-imidazolidinylidene; abbreviated as SIAr), that features bulky groups strategically placed in remote positions. When the reduction of (SIAr)3Fe4S4Cl or [(SIAr)3Fe4S4(THF)]+ is conducted in the presence of SIAr, the formation of (SIAr)4Fe8S8 is indeed suppressed, permitting characterization of the reduced [Fe4S4]0 product. Surprisingly, rather than being an N2 complex, the product is simply (SIAr)3Fe4S4: a cluster with a three-coordinate Fe site that adopts an unusually pyramidalized geometry. Although (SIAr)3Fe4S4 does not coordinate N2 to any appreciable extent under the surveyed conditions, it does bind CO to form (SIAr)3Fe4S4(CO). This finding demonstates that the binding pocket at the unique Fe is not too small for N2; instead, the exceptionally weak affinity for N2 can be attributed to weak Fe-N2 bonding. The differences in the N2 coordination chemistry between sterically protected Mo-Fe-S clusters and Fe-only Fe-S clusters are discussed.

Electrocatalytic Reduction of Dinitrogen to Ammonia with Water as Proton and Electron Donor Catalyzed by a Combination of a Tri-ironoxotungstate and an Alkali Metal Cation

The electrification of ammonia synthesis is a key target for its decentralization and lowering impact on atmospheric CO2 concentrations. The lithium metal electrochemical reduction of nitrogen to ammonia using alcohols as proton/electron donors is an important advance, but requires rather negative potentials, and anhydrous conditions. Organometallic electrocatalysts using redox mediators have also been reported. Water as a proton and electron donor has not been demonstrated in these reactions. Here a N2 to NH3 electrocatalytic reduction using an inorganic molecular catalyst, a tri-iron substituted polyoxotungstate, {SiFe3W9}, is presented. The catalyst requires the presence of Li+ or Na+ cations as promoters through their binding to {SiFe3W9}. Experimental NMR, CV and UV-vis measurements, and MD simulations and DFT calculations show that the alkali metal cation enables the decrease of the redox potential of {SiFe3W9} allowing the activation of N2. Controlled potential electrolysis with highly purified 14N2 and 15N2 ruled out formation of NH3 from contaminants. Importantly, using Na+ cations and polyethylene glycol as solvent, the anodic oxidation of water can be used as a proton and electron donor for the formation of NH3. In an undivided cell electrolyzer under 1 bar N2, rates of NH3 formation of 1.15 nmol sec-1 cm-2, faradaic efficiencies of ∼25%, 5.1 equiv of NH3 per equivalent of {SiFe3W9} in 10 h, and a TOF of 64 s-1 were obtained. The future development of suitable high surface area cathodes and well solubilized N2 and the use of H2O as the reducing agent are important keys to the future deployment of an electrocatalytic ammonia synthesis.

Revisiting the electronic structure of N2-bound cAAC-borylene at the CASSCF level: a detailed bonding picture of borylene-N2 interaction

A base-trapped borylene species featuring a cyclic-(alkyl)(amino)carbene (cAAC) has shown unique bonding interactions with dinitrogen, thereby, opening a new avenue for N2 activation by main-group compounds. The detailed electronic structure and qualitative bonding picture between cAAC-trapped borylene and N2 remain to be fully understood. This work presents a multiconfigurational complete active space self-consistent field (CASSCF)-based electronic structure investigation on the N2-bound cAAC-borylene species (1) isolated by Braunschweig et al. Specifically, the synergistic bonding between the borylene units and N2 involving the donation from the N-N σ to the unoccupied orbital of borylene and back-donation from the occupied orbital of borylene to the N-N π* has been unequivocally established using CASSCF-derived natural orbitals and electronic configuration. Bonding interactions between the HOMO of the borylene units and the N-N π* (HOMOcAAC-B + π*NN) and the LUMO of the borylene units and the N-N σ (LUMOcAAC-B + σNN) in 1 were apparent through the CASSCF-derived natural orbitals. The unique bonding of the B-N-N-B core in 1 and the resulting geometry have also been compared with the M-N-N-M core of a prototypical transition metal(M)-N2 complex. Finally, the change in the electronic structure and geometry of the N2-bound borylene species 1 on two-electron reduction has been investigated in the context of N2 activation.

Coordination and Activation of N2 at Low-Valent Magnesium using a Heterobimetallic Approach: Synthesis and Reactivity of a Masked Dimagnesium Diradical

The activation of dinitrogen (N2 ) by transition metals is central to the highly energy intensive, heterogeneous Haber-Bosch process. Considerable progress has been made towards more sustainable homogeneous activations of N2 with d- and f-block metals, though little success has been had with main group metals. Here we report that the reduction of a bulky magnesium(II) amide [(TCHP NON)Mg] (TCHP NON=4,5-bis(2,4,6-tricyclohexylanilido)-2,7-diethyl-9,9-dimethyl-xanthene) with 5 % w/w K/KI yields the magnesium-N2 complex [{K(TCHP NON)Mg}2 (μ-N2 )]. DFT calculations and experimental data show that the dinitrogen unit in the complex has been reduced to the N2 2- dianion, via a transient anionic magnesium(I) radical. The compound readily reductively activates CO, H2 and C2 H4 , in reactions in which it acts as a masked dimagnesium(I) diradical.

A Broad Light-Harvesting Conjugated Oligoelectrolyte Enables Photocatalytic Nitrogen Fixation in a Bacterial Biohybrid

We report a rationally designed membrane-intercalating conjugated oligoelectrolyte (COE), namely COE-IC, which endows aerobic N2 -fixing bacteria Azotobacter vinelandii with a light-harvesting ability that enables photosynthetic ammonia production. COE-IC possesses an acceptor-donor-acceptor (A-D-A) type conjugated core, which promotes visible light absorption with a high molar extinction coefficient. Furthermore, COE-IC spontaneously associates with A. vinelandii to form a biohybrid in which the COE is intercalated within the lipid bilayer membrane. In the presence of L-ascorbate as a sacrificial electron donor, the resulting COE-IC/A. vinelandii biohybrid showed a 2.4-fold increase in light-driven ammonia production, as compared to the control. Photoinduced enhancement of bacterial biomass and production of L-amino acids is also observed. Introduction of isotopically enriched 15 N2 atmosphere led to the enrichment of 15 N-containing intracellular metabolites, consistent with the products being generated from atmospheric N2 .

Electrochemical nitrogen fixation on single metal atom catalysts

The electrochemical reduction of nitrogen (eNRR) offers a promising alternative to the Haber-Bosch (H-B) process for producing ammonia under moderate conditions. However, the inertness of dinitrogen and the competing hydrogen evolution reaction pose significant challenges for eNRR. Thus, developing more efficient electrocatalysts requires a deeper understanding of the underlying mechanistic reactions and electrocatalytic activity. Single atom catalysts, which offer tunable catalytic properties and increased selectivity, have emerged as a promising avenue for eNRR. Carbon and metal-based substrates have proven effective for dispersing highly active single atoms that can enhance eNRR activity. In this review, we explore the use of atomically dispersed single atoms on different substrates for eNRR from both conceptual and experimental perspectives. The review is divided into four sections: the first section describes eNRR mechanistic pathways, the second section focuses on single metal atom catalysts (SMACs) with metal atoms dispersed on carbon substrates for eNRR, the third section covers SMACs with metal atoms dispersed on non-carbon substrates for eNRR, and the final section summarizes the remaining challenges and future scope of eNRR for green ammonia production.

A mononuclear, terminal titanium(III) imido

We report the first mononuclear TiIII complex possessing a terminal imido ligand. Complex [TptBu,MeTi{NSi(CH3)3}(THF)] (2) (TptBu,Me = hydridotris(3-tert-butyl-5-methylpyrazol-1-yl)borate) is prepared by reduction of [TptBu,MeTi{NSi(CH3)3}(Cl)] (1) with KC8 in high yield. The connectivity and metalloradical nature of 2 were confirmed by single crystal X-ray diffraction studies, Q- and X-band EPR, UV-Vis and 1H NMR spectroscopies. The d1 complex [(TptBu,Me)TiCl(OEt2)][B(C6F5)4] (3), was prepared to spectroscopically compare it to 2. Electrochemical studies of 1 and 2 reveal a reversible 1e- process, and chemical oxidants ClCPh3 or 1/2 eq. XeF2 react cleanly with 2 yielding 1 or the fluoride derivative [TptBu,MeTi{NSi(CH3)3}(F)] (4), respectively.

Inept N2 Activation of Tri-Nuclear Nickel Complex with Labile Sulfur Ligands Facilitates Selective N2 H4 Formation in Electrocatalytic Conversion of N2

Conversion of N2 to the energy vector N2 H4 under benign conditions is highly desirable. However, such N2 fixation processes are extremely rare. It has been recently reported that N2 to N2 H4 conversion can be achieved electrochemically by using a trinuclear [Ni3 (S2 C3 H6 )4 ]2- complex (named as [Ni3 S8 ]2- ). There are hardly any precedents of Nitrogen Reduction Reaction (NRR) by molecular catalysts having Ni and the highly unusual selectivity for N2 H4 over NH3 makes this electrochemical reduction unique. A systematic theoretical study employing calibrated Density Functional Theory to unearth the mechanisms of NRR (4e- /4H+ ) and Hydrogen Evolution Reaction (2e- /2H+ ) was conducted for the aforementioned trinuclear Ni complex. Our findings unravel a curious case of ligand lability working in tandem with metal centers in facilitating this unprecedented electrocatalytic activity. Furthermore, it is shown that the poor N-N bond activation property of Ni is responsible for this unusual selectivity. Additionally, the Hydrogen Evolution Reaction (HER) mechanistic pathways have also been delineated in this report. The mechanistic intricacies thus unearthed in this study may assist in developing more efficient electrocatalysts for N2 H4 production through NRR.

Anomalous π-backbonding in complexes between B(SiR3)3 and N2: catalytic activation and breaking of scaling relations

Chemical transformations of molecular nitrogen (N2), including the nitrogen reduction reaction (NRR), are difficult to catalyze because of the weak Lewis basicity of N2. In this study, it is shown that Lewis acids of the types B(SiR3)3 and B(GeR3)3 bind N2 and CO with anomalously short and strong B-N or B-C bonds. B(SiH3)3·N2 has a B-N bond length of 1.48 Å and a complexation enthalpy of -15.9 kcal mol-1 at the M06-2X/jun-cc-pVTZ level. The selective binding enhancement of N2 and CO is due to π-backbonding from Lewis acid to Lewis base, as demonstrated by orbital analysis and density difference plots. The π-backbonding is found to be a consequence of constructive orbital interactions between the diffuse and highly polarizable B-Si and B-Ge bond regions and the π and π* orbitals of N2. This interaction is strengthened by electron donating substituents on Si or Ge. The π-backbonding interaction is predicted to activate N2 for chemical transformation and reduction, as it decreases the electron density and increases the length of the N-N bond. The binding of N2 and CO by the B(SiR3)3 and B(GeR3)3 types of Lewis acids also has a strong σ-bonding contribution. The relatively high σ-bond strength is connected to the highly positive surface electrostatic potential [VS(r)] above the B atom in the tetragonal binding conformation, but the σ-bonding also has a significant coordinate covalent (dative) contribution. Electron withdrawing substituents increase the potential and the σ-bond strength, but favor the binding of regular Lewis acids, such as NH3 and F-, more strongly than binding of N2 and CO. Molecules of the types B(SiR3)3 and B(GeR3)3 are chemically labile and difficult to synthesize. Heterogenous catalysts with the wanted B(Si-)3 or B(Ge-)3 bonding motif may be prepared by boron doping of nanostructured silicon or germanium compounds. B-doped and hydrogenated silicene is found to have promising properties as catalyst for the electrochemical NRR.

Assessment of DFT functionals for a minimal nitrogenase [Fe(SH)4H]- model employing state-of-the-art ab initio methods

We have designed a [Fe(SH)4H]- model with the fifth proton binding either to Fe or S. We show that the energy difference between these two isomers (∆E) is hard to estimate with quantum-mechanical (QM) methods. For example, different density functional theory (DFT) methods give ∆E estimates that vary by almost 140 kJ/mol, mainly depending on the amount of exact Hartree-Fock included (0%-54%). The model is so small that it can be treated by many high-level QM methods, including coupled-cluster (CC) and multiconfigurational perturbation theory approaches. With extrapolated CC series (up to fully connected coupled-cluster calculations with singles, doubles, and triples) and semistochastic heat-bath configuration interaction methods, we obtain results that seem to be converged to full configuration interaction results within 5 kJ/mol. Our best result for ∆E is 101 kJ/mol. With this reference, we show that M06 and B3LYP-D3 give the best results among 35 DFT methods tested for this system. Brueckner doubles coupled cluster with perturbaitve triples seems to be the most accurate coupled-cluster approach with approximate triples. CCSD(T) with Kohn-Sham orbitals gives results within 4-11 kJ/mol of the extrapolated CC results, depending on the DFT method. Single-reference CC calculations seem to be reasonably accurate (giving an error of ∼5 kJ/mol compared to multireference methods), even if the D1 diagnostic is quite high (0.25) for one of the two isomers.

Highly Selective Fe-Catalyzed Nitrogen Fixation to Hydrazine Enabled by Sm(II) Reagents with Tailored Redox Potential and pKa

Controlling product selectivity in multiproton, multielectron reductions of unsaturated small molecules is of fundamental interest in catalysis. For the N2 reduction reaction (N2RR) in particular, parameters that dictate selectivity for either the 6H+/6e- product ammonia (NH3) or the 4H+/4e- product hydrazine (N2H4) are poorly understood. To probe this issue, we have developed conditions to invert the selectivity of a tris(phosphino)borane iron catalyst (Fe), with which NH3 is typically the major product of N2R, to instead favor N2H4 as the sole observed fixed-N product (>99:1). This dramatic shift is achieved by replacing moderate reductants and strong acids with a very strongly reducing but weakly acidic SmII-(2-pyrrolidone) core supported by a hexadentate dianionic macrocyclic ligand (SmII-PH) as the net hydrogen-atom donor. The activity and efficiency of the catalyst with this reagent remain high (up to 69 equiv of N2H4 per Fe and 67% fixed-N yield per H+). However, by generating N2H4 as the kinetic product, the overpotential of this Sm-driven reaction is 700 mV lower than that of the mildest reported set of NH3-selective conditions with Fe. Mechanistic data support assignment of iron hydrazido(2-) species FeNNH2 as selectivity-determining: we infer that protonation of FeNNH2 at Nβ, favored by strong acids, releases NH3, whereas one-electron reduction to FeNNH2-, favored by strong reductants such as SmII-PH, produces N2H4 via reactivity initiated at Nα. Spectroscopic data also implicate a role for SmIII-binding to anionic FeN2- (via an Fe-N2- -SmIII species) with respect to catalytic efficacy.

High efficiency carbon nanotubes-based single-atom catalysts for nitrogen reduction

Carbon-based single-atom catalysts (SACs) for electrochemical nitrogen reduction reaction (NRR) have received increasing attention due to their sustainable, efficient, and green advantages. However, at present, the research on carbon nanotubes (CNTs)-based NRR catalysts is very limited. In this paper, using FeN₃@(n, 0) CNTs (n = 3 ~ 10) as the representative catalysts, we demonstrate that the CNT curvatures will affect the spin polarization of the catalytic active centers, the activation of the adsorbed N₂ molecules and the Gibbs free energy barriers for the formation of the critical intermediates in the NRR processes, thus changing the catalytic performance of CNT-based catalysts. Zigzag (8, 0) CNT was taken as the optimal substrate, and twenty transition metal atoms (Sc, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Nb, Mo, Tc, Ru, Rh, Pd, W, Re, Ir, and Pt) were embedded into (8, 0) CNT via N₃ group to construct the NRR catalysts. Their electrocatalytic performance for NRR were examined using DFT calculations, and TcN₃@(8, 0) CNT was screened out as the best candidate with a low onset potential of - 0.53 V via the distal mechanism, which is superior to the molecules- or graphene-support Tc catalysts. Further electronic properties analysis shows that the high NRR performance of TcN₃@(8, 0) CNT originates from the strong d-2π* interaction between the N₂ molecule and Tc atom. TcN₃@(8, 0) CNT also exhibits higher selectivity for NRR than the competing hydrogen evolution reaction (HER) process. The present work not only provides a promising catalyst for NRR, but also open up opportunities for further exploring of low-dimensional carbon-based high efficiency electrochemical NRR catalysts.

Enhanced NH3 Synthesis from Air in a Plasma Tandem-Electrocatalysis System Using Plasma-Engraved N-Doped Defective MoS2

We have developed a sustainable method to produce NH₃ directly from air using a plasma tandem-electrocatalysis system that operates via the N₂-NO_x-NH₃ pathway. To efficiently reduce NO₂^- to NH₃, we propose a novel electrocatalyst consisting of defective N-doped molybdenum sulfide nanosheets on vertical graphene arrays (N-MoS₂/VGs). We used a plasma engraving process to form the metallic 1T phase, N doping, and S vacancies in the electrocatalyst simultaneously. Our system exhibited a remarkable NH₃ production rate of 7.3 mg h^-1 cm^-2 at -0.53 V vs RHE, which is almost 100 times higher than the state-of-the-art electrochemical nitrogen reduction reaction and more than double that of other hybrid systems. Moreover, a low energy consumption of only 2.4 MJ mol_NH3^-1 was achieved in this study. Density functional theory calculations revealed that S vacancies and doped N atoms play a dominant role in the selective reduction of NO₂^- to NH₃. This study opens up new avenues for efficient NH₃ production using cascade systems.

Bioinspired Framework Catalysts: From Enzyme Immobilization to Biomimetic Catalysis

Enzymatic catalysis has fueled considerable interest from chemists due to its high efficiency and selectivity. However, the structural complexity and vulnerability hamper the application potentials of enzymes. Driven by the practical demand for chemical conversion, there is a long-sought quest for bioinspired catalysts reproducing and even surpassing the functions of natural enzymes. As nanoporous materials with high surface areas and crystallinity, metal-organic frameworks (MOFs) represent an exquisite case of how natural enzymes and their active sites are integrated into porous solids, affording bioinspired heterogeneous catalysts with superior stability and customizable structures. In this review, we comprehensively summarize the advances of bioinspired MOFs for catalysis, discuss the design principle of various MOF-based catalysts, such as MOF-enzyme composites and MOFs embedded with active sites, and explore the utility of these catalysts in different reactions. The advantages of MOFs as enzyme mimetics are also highlighted, including confinement, templating effects, and functionality, in comparison with homogeneous supramolecular catalysts. A perspective is provided to discuss potential solutions addressing current challenges in MOF catalysis.

Enzymatic Fischer-Tropsch-Type Reactions

The Fischer-Tropsch (FT) process converts a mixture of CO and H2 into liquid hydrocarbons as a major component of the gas-to-liquid technology for the production of synthetic fuels. Contrary to the energy-demanding chemical FT process, the enzymatic FT-type reactions catalyzed by nitrogenase enzymes, their metalloclusters, and synthetic mimics utilize H+ and e- as the reducing equivalents to reduce CO, CO2, and CN- into hydrocarbons under ambient conditions. The C1 chemistry exemplified by these FT-type reactions is underscored by the structural and electronic properties of the nitrogenase-associated metallocenters, and recent studies have pointed to the potential relevance of this reactivity to nitrogenase mechanism, prebiotic chemistry, and biotechnological applications. This review will provide an overview of the features of nitrogenase enzymes and associated metalloclusters, followed by a detailed discussion of the activities of various nitrogenase-derived FT systems and plausible mechanisms of the enzymatic FT reactions, highlighting the versatility of this unique reactivity while providing perspectives onto its mechanistic, evolutionary, and biotechnological implications.

Photoelectrocatalysis Synthesis of Ammonia Based on a Ni-Doped MoS2/Si Nanowires Photocathode and Porous Water with High N2 Solubility

The synthesis of ammonia through photocatalysis or photoelectrochemistry (PEC) and nitrogen reduction reaction (NRR) has become one of the recent research hotspots in the field, where the catalyzed materials and strategies are critical for the NRR. Herein, a Ni-doped MoS₂/Si nanowires (Ni-MoS₂/Si NWs) photocathode is prepared, where the Si NWs are formed on the surface of a Si slice by the metal-assisted chemical etching method, and the hydrothermally synthesized Ni-MoS₂ nanosheets are then cast-coated on the Si NWs electrode. Porous water with high solubility of N₂ is prepared by treating a hydrophobic porous coordination polymer with hydrophilic bovine serum albumin for subsequent aqueous dispersing. The relevant electrodes and materials are characterized by electrochemistry, UV-vis spectrophotometry, scanning electron microscopy/energy dispersive spectroscopy, transmission electron microscopy, X-ray diffraction, X-ray photoelectron spectroscopy, Brunauer-Emmett-Teller method, and zeta potential method. The uses of the Ni-MoS₂/Si NWs photocathode and the porous water with high nitrogen solubility for PEC-NRR give a yield of NH₃ of 12.0 mmol h^-1 m^-2 under optimal conditions (e.g., at 0.25 V vs RHE), and the obtained apparent Faradaic efficiency higher than 100% is discussed from the inherent photocurrent-free photocatalysis effect of the photoelectrodes and the suggested classification of three kinds of electrons in PEC, which may have some reference value in understanding and improving other PEC-based processes.

Systematic identification of endogenous strong constitutive promoters from the diazotrophic rhizosphere bacterium Pseudomonas stutzeri DSM4166 to improve its nitrogenase activity

BACKGROUND

Biological nitrogen fixation converting atmospheric dinitrogen to ammonia is an important way to provide nitrogen for plants. Pseudomonas stutzeri DSM4166 is a diazotrophic Gram-negative bacterium isolated from the rhizosphere of cereal Sorghum nutans. Endogenous constitutive promoters are important for engineering of the nitrogen fixation pathway, however, they have not been systematically characterized in DSM4166.

RESULTS

Twenty-six candidate promoters were identified from DSM4166 by RNA-seq analysis. These 26 promoters were cloned and characterized using the firefly luciferase gene. The strengths of nineteen promoters varied from 100 to 959% of the strength of the gentamicin resistance gene promoter. The strongest P12445 promoter was used to overexpress the biological nitrogen fixation pathway-specific positive regulator gene nifA. The transcription level of nitrogen fixation genes in DSM4166 were significantly increased and the nitrogenase activity was enhanced by 4.1 folds determined by the acetylene reduction method. The nifA overexpressed strain produced 359.1 µM of extracellular ammonium which was 25.6 times higher than that produced by the wild-type strain.

CONCLUSIONS

The endogenous strong constitutive promoters identified in this study will facilitate development of DSM4166 as a microbial cell factory for nitrogen fixation and production of other useful compounds.

Carbonate precipitation and nitrogen fixation in AMG (Artificial Martian Ground) by cyanobacteria

This article describes experiments performed to study the survival, growth, specific adaptations and bioremediation potential of certain extreme cyanobacteria strains within a simulation of the atmospheric composition, temperature and pressure expected in a future Martian greenhouse. Initial species have been obtained from Mars-analogue sites in Georgia. The results clearly demonstrate that specific biochemical adaptations allow these autotrophs to metabolize within AMG (Artificial Martian Ground) and accumulate biogenic carbon and nitrogen. These findings may thus contribute to the development of future Martian agriculture, as well as other aspects of the life-support systems at habitable Mars stations. The study shows that carbonate precipitation and nitrogen fixation, performed by cyanobacterial communities thriving within the simulated Martian greenhouse conditions, are cross-linked biological processes. At the same time, the presence of the perchlorates (at low concentrations) in the Martian ground may serve as the initial source of oxygen and, indirectly, hydrogen via photo-Fenton reactions. Various carbonates, ammonium and nitrate salts were obtained as the result of these experiments. These affect the pH, salinity and solubility of the AMG and its components, and so the AMG's scanty biogenic properties improved, which is essential for the sustainable growth of the agricultural crops. Therefore, the use of microorganisms for the biological remediation and continuous in situ fertilization of Artificial Martian Ground is possible.

Connecting the geometric and electronic structures of the nitrogenase iron-molybdenum cofactor through site-selective 57Fe labelling

Understanding the chemical bonding in the catalytic cofactor of the Mo nitrogenase (FeMo-co) is foundational for building a mechanistic picture of biological nitrogen fixation. A persistent obstacle towards this goal has been that the 57Fe-based spectroscopic data-although rich with information-combines responses from all seven Fe sites, and it has therefore not been possible to map individual spectroscopic responses to specific sites in the three-dimensional structure. Here we have addressed this challenge by incorporating 57Fe into a single site of FeMo-co. Spectroscopic analysis of the resting state informed on the local electronic structure of the terminal Fe1 site, including its oxidation state and spin orientation, and, in turn, on the spin-coupling scheme for the entire cluster. The oxidized resting state and the first intermediate in nitrogen fixation were also characterized, and comparisons with the resting state provided molecular-level insights into the redox chemistry of FeMo-co.

Achieving Control over the Reduction/Coupling Dichotomy of N2 by Boron Metallomimetics

We report a detailed computational and experimental study of the fixation and reductive coupling of dinitrogen with low-valent boron compounds. Consistent with our mechanistic findings, the selectivity toward nitrogen fixation or coupling can be controlled through either steric bulk or the reaction conditions, allowing for the on-demand synthesis of nitrogen chains. The electronic structure and intriguing magnetic properties of intermediates and products of the reaction of dinitrogen with borylenes are also elucidated using high-level computational approaches.

Syntheses, Characterizations, Crystal Structures, and Protonation Reactions of Dinitrogen Chromium Complexes Supported with Triamidoamine Ligands

A novel dinitrogen-dichromium complex, [{Cr(L^Bn)}₂(μ-N₂)] (1), has been prepared from reaction of CrCl₃ with a lithiated triamidoamine ligand (Li₃L^Bn) under dinitrogen. The X-ray crystal structure analysis of 1 revealed that it is composed of two independent dimeric Cr complexes bridged by N₂ in the unit cell. The bridged N-N bond lengths (1.188(4) and 1.185(7) Å) were longer than the free dinitrogen molecule. The elongations of N-N bonds in 1 were also supported by the fact that the ν(N-N) stretching vibration at 1772 cm^-1 observed in toluene is smaller than the free N₂. Complex 1 was identified to be a 5-coordinated high spin Cr(IV) complex by Cr K-edge XANES measurement. The ¹H NMR spectrum and temperature dependent magnetic susceptibility of 1 indicated that complex 1 is in the S = 1 ground state, in which two Cr(IV) ions and unpaired electron spins of the bridging N₂^2- ligand are strongly antiferromagnetically coupled. Reaction of complex 1 with 2.3 equiv of Na or K gave chromium complexes with N₂ between the Cr ion and the respective alkali metal ion, [{CrNa(L^Bn)(N₂)(Et₂O)}₂] (2) and [{CrK(L^Bn)(N₂)}₄(Et₂O)₂] (3), respectively. Furthermore, the complexes 2 and 3 reacted with 15-crown-5 and 18-crown-6 to form the respective crown-ether adducts, [CrNa(L^Bn)(N₂)(15-crown-5)] (4) and [CrK(L^Bn)(N₂)(18-crown-6)] (5). The XANES measurements of complexes 2, 3, 4, and 5 revealed that they are high spin Cr(IV) complexes like complex 1. All complexes reacted with a reducing agent and a proton source to form NH₃ and/or N₂H₄. The yields of these products in the presence of K⁺ were higher than those in the presence of Na⁺. The electronic structures and binding properties of 1, 2, 3, 4, and 5 were evaluated and discussed based on their DFT calculations.

Breaking bonds and breaking rules: inert-bond activation by [(iPr3P)Ni]5H4 and catalytic stereospecific norbornene dimerization

The facile carbon atom abstraction reaction by [(ⁱPr₃P)Ni]₅H₆ (1) with various terminal alkenes to give [(ⁱPr₃P)Ni]₅H₄(μ₅-C) (2) occurs via a common highly reactive intermediate [(ⁱPr₃P)Ni]₅H₄ (3), which was isolated by the reaction of 1 with norbornene. Temperature dependent ¹H and ³¹P{¹H} NMR chemical shifts of 3 are consistent with a thermally populated triplet excited state only 2 kcal mol^-1 higher energy than the diamagnetic ground state. Complex 3 catalyzes the dimerization of norbornene to stereoselectively provide exclusively (Z) anti-(bis-2,2'-norbornylidene).

How Protons Move in Enzymes─The Case of Nitrogenase

When moving protons in enzymes, water molecules are often used as intermediates. The water molecules used are not necessarily seen in the crystal structures if they move around at high rates. In a different situation, for metal containing cofactors in enzymes, it is sometimes necessary to move protons on the cofactor from the position they enter the cofactor to another position where the energy is lower. That is, for example, the situation in nitrogenase. In recent studies on that enzyme, prohibitively high barriers were sometimes found for transferring protons, and that was used as a strong argument against mechanisms where a sulfide is lost in the mechanism. A high barrier could be due to nonoptimal distances and angles at the transition state. In the present study, possibilities are investigated to use water molecules to reduce these barriers. The study is very general and could have been done for many other enzymes. The effect of water was found to be very large in the case of nitrogenase with a lowering of one barrier from 15.6 kcal/mol down to essentially zero. It is concluded that the effect of water molecules must be taken into account for meaningful results.

The Fe Protein Cycle Associated with Nitrogenase Catalysis Requires the Hydrolysis of Two ATP for Each Single Electron Transfer Event

A central feature of the current understanding of dinitrogen (N₂) reduction by the enzyme nitrogenase is the proposed coupling of the hydrolysis of two ATP, forming two ADP and two Pi, to the transfer of one electron from the Fe protein component to the MoFe protein component, where substrates are reduced. A redox-active [4Fe-4S] cluster associated with the Fe protein is the agent of electron delivery, and it is well known to have a capacity to cycle between a one-electron-reduced [4Fe-4S]¹⁺ state and an oxidized [4Fe-4S]²⁺ state. Recently, however, it has been shown that certain reducing agents can be used to further reduce the Fe protein [4Fe-4S] cluster to a super-reduced, all-ferrous [4Fe-4S]⁰ state that can be either diamagnetic (S = 0) or paramagnetic (S = 4). It has been proposed that the super-reduced state might fundamentally alter the existing model for nitrogenase energy utilization by the transfer of two electrons per Fe protein cycle linked to hydrolysis of only two ATP molecules. Here, we measure the number of ATP consumed for each electron transfer under steady-state catalysis while the Fe protein cluster is in the [4Fe-4S]¹⁺ state and when it is in the [4Fe-4S]⁰ state. Both oxidation states of the Fe protein are found to operate by hydrolyzing two ATP for each single-electron transfer event. Thus, regardless of its initial redox state, the Fe protein transfers only one electron at a time to the MoFe protein in a process that requires the hydrolysis of two ATP.

In Silico Partial N2 to NH3 Conversion with a Light Atom Molecule

N₂ can be stepwise converted in silico into one molecule NH₃ and a secondary amide with a bond activator molecule consisting only of light main group elements. The proposed N₂ -activating pincer-related compound carries a silyl ion (Si⁽⁺⁾ ) center as well as three Lewis acidic (-BF₂ ) and three Lewis basic (-PMe₂ ) sites, providing an efficient binding pocket for gaseous N₂ within the framework of intramolecular frustrated Lewis pairs (FLP). In addition, it exhibits supportive secondary P-B and F⋅⋅⋅B contacts, which stabilize the structure. In the PSi⁽⁺⁾ -N-N-BP environment the N≡N triple bond is extended from 1.09 Å to remarkable 1.43 Å, resembling a N-N single bond. The strongly activated N-N-fragment is prone to subsequent hydride addition and protonation steps, resulting in the energy efficient transfer of two hydrogen equivalents. The next hydride added causes the release of one molecule NH₃ , but leaves the ligand system as poisoned R₃ Si⁽⁺⁾ -NH₂ -PMe₂ or R₃ Si⁽⁺⁾ -NH₃ dead-end states behind. The study indicates that approximately tetrahedral constrained SiBP₂ -pockets are capable to activate N₂ , whereas the acid-rich SiB₃ - and SiB₂ P-pocktes, as well as the base-rich SiP₃ -pockets fail, hinting towards the high relevance of the acid-base proportion and relative orientation. The electronic structure of the N₂ -activated state is compared to the corresponding state of a recently published peri-substituted bond activator molecule featuring a PSi⁽⁺⁾ -N-N-Si⁽⁺⁾ P site (S. Mebs, J. Beckmann, Physical Chemistry Chemical Physics 2022, 24, 20953-20967).

Dinitrogen Complexes of Cobalt(-I) Supported by Rare-Earth Metal-Based Metalloligands

Sequential reactions of heptadentate phosphinoamine LH₃ with rare-earth metal tris-alkyl precursor (Me₃SiCH₂)₃Ln(THF)₂ (Ln = Sc, Lu, Yb, Y, Gd) and a low-valent cobalt complex (Ph₃P)₃CoI afforded rare-earth metal-supported cobalt iodide complexes. Reduction of these iodide complexes under N₂ allowed the isolation of the first series of dinitrogen complexes of Co(-I) featuring dative Co(-I) → Ln (Ln = Sc, Lu, Yb, Y, Gd) bonding interactions. These compounds were characterized by multinuclear NMR spectroscopy, X-ray diffraction analysis, electrochemistry, and computational studies. The correlation of N-N vibrational frequencies with the pK_a of [Ln(H₂O)₆]³⁺ showed that strongest activation of N₂ was achieved with the least Lewis acidic Gd(III) ion. Interestingly, these Ln-Co-N₂ complexes catalyzed silylation of N₂ in the presence of KC₈ and Me₃SiCl with turnover numbers (TONs) up to 16, where the lutetium-supported Co(-I) complex showed the highest activity within the series. The role of the Lewis acidic Ln(III) was crucial to achieve catalytic turnovers and tunable reactivity toward N₂ functionalization.

N2 Reduction versus H2 Evolution in a Molybdenum- or Tungsten-Based Small-Molecule Model System of Nitrogenase

Molybdenum dinitrogen complexes have played a major role as catalytic model systems of nitrogenase. In comparison, analogous tungsten complexes have in most cases found to be catalytically inactive. Herein, a tungsten complex was shown to be supported by a pentadentate tetrapodal (pentaPod) phosphine ligand, under conditions of N₂ fixation, primarily catalyzes the hydrogen evolution reaction (HER), in contrast to its Mo analogue, which catalytically mediates the nitrogen-reduction reaction (N₂ RR). DFT calculations were employed to evaluate possible mechanisms and identify the most likely pathways of N₂ RR and HER activities exhibited by Mo- and W-pentaPod complexes. Two mechanisms for N₂ RR by PCET are considered, starting from neutral (M(0) cycle) and cationic (M(I) cycle) dinitrogen complexes (M=Mo, W). The latter was found to be energetically more favorable. For HER three scenarios are treated; that is, through bimolecular reactions of early M-N_x H_y intermediates, pure hydride intermediates or mixed M(H)(N_x H_y ) species.

Dynamic effects on ligand field from rapid hydride motion in an iron(ii) dimer with an S = 3 ground state

Hydride complexes are important in catalysis and in iron-sulfur enzymes like nitrogenase, but the impact of hydride mobility on local iron spin states has been underexplored. We describe studies of a dimeric diiron(ii) hydride complex using X-ray and neutron crystallography, Mössbauer spectroscopy, magnetism, DFT, and ab initio calculations, which give insight into the dynamics and the electronic structure brought about by the hydrides. The two iron sites in the dimer have differing square-planar (intermediate-spin) and tetrahedral (high-spin) iron geometries, which are distinguished only by the hydride positions. These are strongly coupled to give an S total = 3 ground state with substantial magnetic anisotropy, and the merits of both localized and delocalized spin models are discussed. The dynamic nature of the sites is dependent on crystal packing, as shown by changes during a phase transformation that occurs near 160 K. The change in dynamics of the hydride motion leads to insight into its influence on the electronic structure. The accumulated data indicate that the two sites can trade geometries by rotating the hydrides, at a rate that is rapid above the phase transition temperature but slow below it. This small movement of the hydrides causes large changes in the ligand field because they are strong-field ligands. This suggests that hydrides could be useful in catalysis not only due to their reactivity, but also due to their ability to rapidly modulate the local electronic structure and spin states at metal sites.