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Thakur MP, Milcu A, Manning P, Niklaus PA, Roscher C, Power S, Reich PB, Scheu S, Tilman D, Ai F, Guo H, Ji R, Pierce S, Ramirez NG, Richter AN, Steinauer K, Strecker T, Vogel A, Eisenhauer N. Plant diversity drives soil microbial biomass carbon in grasslands irrespective of global environmental change factors. GLOBAL CHANGE BIOLOGY 2015; 21:4076-4085. [PMID: 26118993 DOI: 10.1111/gcb.13011] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Accepted: 05/27/2015] [Indexed: 06/04/2023]
Abstract
Soil microbial biomass is a key determinant of carbon dynamics in the soil. Several studies have shown that soil microbial biomass significantly increases with plant species diversity, but it remains unclear whether plant species diversity can also stabilize soil microbial biomass in a changing environment. This question is particularly relevant as many global environmental change (GEC) factors, such as drought and nutrient enrichment, have been shown to reduce soil microbial biomass. Experiments with orthogonal manipulations of plant diversity and GEC factors can provide insights whether plant diversity can attenuate such detrimental effects on soil microbial biomass. Here, we present the analysis of 12 different studies with 14 unique orthogonal plant diversity × GEC manipulations in grasslands, where plant diversity and at least one GEC factor (elevated CO2 , nutrient enrichment, drought, earthworm presence, or warming) were manipulated. Our results show that higher plant diversity significantly enhances soil microbial biomass with the strongest effects in long-term field experiments. In contrast, GEC factors had inconsistent effects with only drought having a significant negative effect. Importantly, we report consistent non-significant effects for all 14 interactions between plant diversity and GEC factors, which indicates a limited potential of plant diversity to attenuate the effects of GEC factors on soil microbial biomass. We highlight that plant diversity is a major determinant of soil microbial biomass in experimental grasslands that can influence soil carbon dynamics irrespective of GEC.
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Affiliation(s)
- Madhav Prakash Thakur
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
- Institute of Biology, University of Leipzig, Johannisallee 21, 04103, Leipzig, Germany
| | - Alexandru Milcu
- CNRS, Ecotron - UPS 3248, Campus Baillarguet, 34980, Montferrier-sur-Lez, France
- CNRS, Centre Centre d'Ecologie Fonctionnelle et Evolutive (CEFE, UMR-5175), 1919 Route de Mende, 34293, Montpellier, France
| | - Pete Manning
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, CH-3013, Bern, Switzerland
| | - Pascal A Niklaus
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, CH-8057, Zurich, Switzerland
| | - Christiane Roscher
- UFZ, Helmholtz Centre for Environmental Research, Community Ecology, Theodor-Lieser-Strasse 4, 06120, Halle, Germany
| | - Sally Power
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 8JL, UK
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Peter B Reich
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia
- Department of Forest Resources, University of Minnesota, 1530 North Cleveland Avenue, St. Paul, MN, 55108, USA
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Berliner Strasse 28, Göttingen, 37073, Germany
| | - David Tilman
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN, 55108, USA
| | - Fuxun Ai
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Xianlin Avenue 163, 210023, Nanjing, China
| | - Hongyan Guo
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Xianlin Avenue 163, 210023, Nanjing, China
| | - Rong Ji
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Xianlin Avenue 163, 210023, Nanjing, China
| | - Sarah Pierce
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 8JL, UK
| | - Nathaly Guerrero Ramirez
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
- Institute of Biology, University of Leipzig, Johannisallee 21, 04103, Leipzig, Germany
| | - Annabell Nicola Richter
- Institute of Ecology, Friedrich Schiller University Jena, Dornburger Str. 159, 07743, Jena, Germany
| | - Katja Steinauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
- Institute of Biology, University of Leipzig, Johannisallee 21, 04103, Leipzig, Germany
| | - Tanja Strecker
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Berliner Strasse 28, Göttingen, 37073, Germany
| | - Anja Vogel
- Institute of Ecology, Friedrich Schiller University Jena, Dornburger Str. 159, 07743, Jena, Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
- Institute of Biology, University of Leipzig, Johannisallee 21, 04103, Leipzig, Germany
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102
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Zuo X, Zhang J, Zhou X, Zhao X, Wang S, Lian J, Lv P, Knops J. Changes in carbon and nitrogen storage along a restoration gradient in a semiarid sandy grassland. ACTA OECOLOGICA 2015. [DOI: 10.1016/j.actao.2015.08.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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103
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Valladares F, Bastias CC, Godoy O, Granda E, Escudero A. Species coexistence in a changing world. FRONTIERS IN PLANT SCIENCE 2015; 6:866. [PMID: 26528323 PMCID: PMC4604266 DOI: 10.3389/fpls.2015.00866] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2015] [Accepted: 09/30/2015] [Indexed: 05/26/2023]
Abstract
The consequences of global change for the maintenance of species diversity will depend on the sum of each species responses to the environment and on the interactions among them. A wide ecological literature supports that these species-specific responses can arise from factors related to life strategies, evolutionary history and intraspecific variation, and also from environmental variation in space and time. In the light of recent advances from coexistence theory combined with mechanistic explanations of diversity maintenance, we discuss how global change drivers can influence species coexistence. We revise the importance of both competition and facilitation for understanding coexistence in different ecosystems, address the influence of phylogenetic relatedness, functional traits, phenotypic plasticity and intraspecific variability, and discuss lessons learnt from invasion ecology. While most previous studies have focused their efforts on disentangling the mechanisms that maintain the biological diversity in species-rich ecosystems such as tropical forests, grasslands and coral reefs, we argue that much can be learnt from pauci-specific communities where functional variability within each species, together with demographic and stochastic processes becomes key to understand species interactions and eventually community responses to global change.
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Affiliation(s)
- Fernando Valladares
- Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, Consejo Superior de Investigaciones Científicas, Madrid, Spain
- Departamento de Ciencias, Universidad Rey Juan Carlos, Móstoles, Madrid, Spain
| | - Cristina C. Bastias
- Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Oscar Godoy
- Instituto de Recursos Naturales y Agrobiología de Sevilla, Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - Elena Granda
- Laboratoire Ecologie Systématique et Evolution, Université Paris Sud/Centre National de la Recherche Scientifique/AgroParisTech, Université Paris-Saclay, Orsay, France
| | - Adrián Escudero
- Departamento de Ciencias, Universidad Rey Juan Carlos, Móstoles, Madrid, Spain
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104
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Ali AA, Medlyn BE, Aubier TG, Crous KY, Reich PB. Elevated carbon dioxide is predicted to promote coexistence among competing species in a trait-based model. Ecol Evol 2015; 5:4717-33. [PMID: 26668735 PMCID: PMC4670051 DOI: 10.1002/ece3.1733] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2015] [Revised: 07/30/2015] [Accepted: 08/22/2015] [Indexed: 11/16/2022] Open
Abstract
Differential species responses to atmospheric CO 2 concentration (Ca) could lead to quantitative changes in competition among species and community composition, with flow-on effects for ecosystem function. However, there has been little theoretical analysis of how elevated Ca (eC a) will affect plant competition, or how composition of plant communities might change. Such theoretical analysis is needed for developing testable hypotheses to frame experimental research. Here, we investigated theoretically how plant competition might change under eC a by implementing two alternative competition theories, resource use theory and resource capture theory, in a plant carbon and nitrogen cycling model. The model makes several novel predictions for the impact of eC a on plant community composition. Using resource use theory, the model predicts that eC a is unlikely to change species dominance in competition, but is likely to increase coexistence among species. Using resource capture theory, the model predicts that eC a may increase community evenness. Collectively, both theories suggest that eC a will favor coexistence and hence that species diversity should increase with eC a. Our theoretical analysis leads to a novel hypothesis for the impact of eC a on plant community composition. This hypothesis has potential to help guide the design and interpretation of eC a experiments.
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Affiliation(s)
- Ashehad A. Ali
- Division of Earth and Environmental SciencesLos Alamos National LaboratoryLos AlamosNew Mexico USA
- Department of Civil and Environmental EngineeringUniversity of CaliforniaIrvineCaliforniaUSA
- Department of Biological SciencesFaculty of ScienceMacquarie UniversityNorth RydeNSW2109Australia
| | - Belinda E. Medlyn
- Department of Biological SciencesFaculty of ScienceMacquarie UniversityNorth RydeNSW2109Australia
- Hawkesbury Institute for the EnvironmentUniversity of Western SydneyLocked Bag 1797PenrithNSW2751Australia
| | - Thomas G. Aubier
- Department of Biological SciencesFaculty of ScienceMacquarie UniversityNorth RydeNSW2109Australia
- UMR 5175Centre d'Ecologie Fonctionnelle et Evolutive1919 route de Mende 34090MontepellierFrance
- UMR 7205Muséum National d'Histoire NaturelleCP5045 rue Buffon75005ParisFrance
| | - Kristine Y. Crous
- Hawkesbury Institute for the EnvironmentUniversity of Western SydneyLocked Bag 1797PenrithNSW2751Australia
| | - Peter B. Reich
- Hawkesbury Institute for the EnvironmentUniversity of Western SydneyLocked Bag 1797PenrithNSW2751Australia
- Department of Forest ResourcesUniversity of MinnesotaSt. PaulMinnesotaUSA
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105
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Matulich KL, Martiny JBH. Microbial composition alters the response of litter decomposition to environmental change. Ecology 2015; 96:154-63. [PMID: 26236900 DOI: 10.1890/14-0357.1] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Kecent studies cemonstrate that microorganisms are sensitive to environmental change, and that their community composition influences ecosystem functioning. However, it is unknown whether microbial composition interacts with the environment to affect the response of ecosystem processes to changing abiotic conditions. To investigate the potential for such interactive effects on leaf litter decomposition, we manipulated microbial composition and three environmental factors predicted to change in the future (moisture, nitrogen availability, and temperature). We isolated fungal and bacterial taxa from leaf litter and used them to construct unique communities. Communities were inoculated into microcosms containing sterile leaf litter and exposed to four environmental treatments (control conditions, increased temperature, decreased moisture, and elevated nitrogen availability). Respiration was tracked over 60 days, and communities were pyrosequenced to assess compositional changes. As hypothesized, composition and environmental treatment interacted to influence respiration rates. In particular, microbial composition interacted more strongly with changing nitrogen availability and less so with changing moisture or temperature. Further, the magnitude of a community's response to a particular environmental change was partly. explained by changes in composition over the course of the experiment; microcosms that showed a large change in respiration rate included more taxa whose relative abundance changed as well. Together, these results suggest that information about microbial composition may be more useful for predicting functional responses to some types of environmental changes than others.
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106
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Response of plant nutrient stoichiometry to fertilization varied with plant tissues in a tropical forest. Sci Rep 2015; 5:14605. [PMID: 26416169 PMCID: PMC4586514 DOI: 10.1038/srep14605] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2014] [Accepted: 08/21/2015] [Indexed: 11/08/2022] Open
Abstract
Plant N:P ratios are widely used as indices of nutrient limitation in terrestrial ecosystems, but the response of these metrics in different plant tissues to altered N and P availability and their interactions remains largely unclear. We evaluated changes in N and P concentrations, N:P ratios of new leaves (<1 yr), older leaves (>1 yr), stems and mixed fine roots of seven species after 3-years of an N and P addition experiment in a tropical forest. Nitrogen addition only increased fine root N concentrations. P addition increased P concentrations among all tissues. The N × P interaction reduced leaf and stem P concentrations, suggesting a negative effect of N addition on P concentrations under P addition. The reliability of using nutrient ratios as indices of soil nutrient availability varied with tissues: the stoichiometric metrics of stems and older leaves were more responsive indicators of changed soil nutrient availability than those of new leaves and fine roots. However, leaf N:P ratios can be a useful indicator of inter-specific variation in plant response to nutrients availability. This study suggests that older leaf is a better choice than other tissues in the assessment of soil nutrient status and predicting plant response to altered nutrients using nutrients ratios.
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107
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Korell L, Schmidt R, Bruelheide H, Hensen I, Auge H. Mechanisms driving diversity-productivity relationships differ between exotic and native communities and are affected by gastropod herbivory. Oecologia 2015; 180:1025-36. [PMID: 26235964 PMCID: PMC4819496 DOI: 10.1007/s00442-015-3395-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 07/09/2015] [Indexed: 11/29/2022]
Abstract
Biodiversity experiments have shown that productivity usually increases with plant species richness. However, most of those studies disregarded the importance of trophic interactions to the diversity-productivity relationship, and focused on the loss of native species while ignoring invasions by exotic species. Yet, as functional complementarity and the impact of plant antagonists are likely to differ between native and exotic communities, the diversity-productivity relationship may change when native communities are invaded by exotic species. We conducted a mesocosm experiment to test how diversity effects, evenness, and productivity differed between exotic and native assemblages of grassland plants, and how these communities were influenced by slug herbivory. In line with other experiments, we found higher productivity in exotic than in native communities. However, different mechanisms (complementarity vs. selection effect) contributed to the positive diversity-productivity relationships in exotic vs. native communities. Against expectations, native communities showed much lower evenness and a greater selection effect, suggesting that competitive dominance among native species may be even stronger than among exotic species. Slug herbivory decreased productivity independently of species origin and species diversity. However, exotic communities showed a threefold higher complementarity effect than native communities in the absence of slugs, which was mainly driven by differences in the responses of native and exotic legumes and nonleguminous herbs. Our results imply that underlying mechanisms for the positive diversity-productivity relationship differ between native and exotic communities in the early stages of community development, and that differential responses of plant functional groups to generalist herbivory can contribute to this pattern.
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Affiliation(s)
- Lotte Korell
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany. .,Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, 06120, Halle, Germany. .,Institute of Biology, Philipps-University Marburg, Karl-von-Frisch-Straße 8, 35043, Marburg, Germany.
| | - Robin Schmidt
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany.,Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, 06120, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Helge Bruelheide
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Isabell Hensen
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Harald Auge
- Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, 06120, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
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108
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Schuster MJ. Increased rainfall variability and N addition accelerate litter decomposition in a restored prairie. Oecologia 2015. [PMID: 26216200 DOI: 10.1007/s00442-015-3396-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Anthropogenic nitrogen deposition and projected increases in rainfall variability (the frequency of drought and heavy rainfall events) are expected to strongly influence ecosystem processes such as litter decomposition. However, how these two global change factors interact to influence litter decomposition is largely unknown. I examined how increased rainfall variability and nitrogen addition affected mass and nitrogen loss of litter from two tallgrass prairie species, Schizachyrium scoparium and Solidago canadensis, and isolated the effects of each during plant growth and during litter decomposition. I increased rainfall variability by consolidating ambient rainfall into larger events and simulated chronic nitrogen deposition using a slow-release urea fertilizer. S. scoparium litter decay was more strongly regulated by the treatments applied during plant growth than by those applied during decomposition. During plant growth, increased rainfall variability resulted in S. scoparium litter that subsequently decomposed more slowly and immobilized more nitrogen than litter grown under ambient conditions, whereas nitrogen addition during plant growth accelerated subsequent mass loss of S. scoparium litter. In contrast, S. canadensis litter mass and N losses were enhanced under either N addition or increased rainfall variability both during plant growth and during decomposition. These results suggest that ongoing changes in rainfall variability and nitrogen availability are accelerating nutrient cycling in tallgrass prairies through their combined effects on litter quality, environmental conditions, and plant community composition.
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Affiliation(s)
- Michael J Schuster
- Department of Forestry and Natural Resources, Purdue University, 715 West State Street, West Lafayette, IN, 47907, USA.
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109
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Shi Y, Zhou G, Jiang Y, Wang H, Xu Z, Song J. Interactive effects of elevated CO2 and precipitation change on leaf nitrogen of dominant Stipa L. species. Ecol Evol 2015; 5:2956-65. [PMID: 26306179 PMCID: PMC4541998 DOI: 10.1002/ece3.1581] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Revised: 05/13/2015] [Accepted: 05/19/2015] [Indexed: 12/03/2022] Open
Abstract
Nitrogen (N) serves as an important mineral element affecting plant productivity and nutritional quality. However, few studies have addressed the interactive effects of elevated CO2 and precipitation change on leaf N of dominant grassland genera such as Stipa L. This has restricted our understanding of the responses of grassland to climate change. We simulated the interactive effects of elevated CO2 concentration and varied precipitation on leaf N concentration (Nmass) of four Stipa species (Stipa baicalensis, Stipa bungeana, Stipa grandis, and Stipa breviflora; the most dominant species in arid and semiarid grassland) using open-top chambers (OTCs). The relationship between the Nmass of these four Stipa species and precipitation well fits a logarithmic function. The sensitivity of these four species to precipitation change was ranked as follows: S. bungeana > S. breviflora > S. baicalensis > S. grandis. The Nmass of S. bungeana was the most sensitive to precipitation change, while S. grandis was the least sensitive among these Stipa species. Elevated CO2 exacerbated the effect of precipitation on Nmass. Nmass decreased under elevated CO2 due to growth dilution and a direct negative effect on N assimilation. Elevated CO2 reduced Nmass only in a certain precipitation range for S. baicalensis (163-343 mm), S. bungeana (164-355 mm), S. grandis (148-286 mm), and S. breviflora (130-316 mm); severe drought or excessive rainfall would be expected to result in a reduced impact of elevated CO2. Elevated CO2 affected the Nmass of S. grandis only in a narrow precipitation range. The effect of elevated CO2 reached a maximum when the amount of precipitation was 253, 260, 217, and 222 mm for S. baicalensis, S. bungeana, S. grandis, and S. breviflora, respectively. The Nmass of S. grandis was the least sensitive to elevated CO2. The Nmass of S. breviflora was more sensitive to elevated CO2 under a drought condition compared with the other Stipa species.
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Affiliation(s)
- Yaohui Shi
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of SciencesBeijing, 100093, China
- University of Chinese Academy of SciencesBeijing, 100049, China
| | - Guangsheng Zhou
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of SciencesBeijing, 100093, China
- Chinese Academy of Meteorological SciencesBeijing, 100081, China
| | - Yanling Jiang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of SciencesBeijing, 100093, China
| | - Hui Wang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of SciencesBeijing, 100093, China
- University of Chinese Academy of SciencesBeijing, 100049, China
| | - Zhenzhu Xu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of SciencesBeijing, 100093, China
| | - Jian Song
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of SciencesBeijing, 100093, China
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110
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Strecker T, Barnard RL, Niklaus PA, Scherer-Lorenzen M, Weigelt A, Scheu S, Eisenhauer N. Effects of plant diversity, functional group composition, and fertilization on soil microbial properties in experimental grassland. PLoS One 2015; 10:e0125678. [PMID: 25938580 PMCID: PMC4418810 DOI: 10.1371/journal.pone.0125678] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Accepted: 03/09/2015] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Loss of biodiversity and increased nutrient inputs are two of the most crucial anthropogenic factors driving ecosystem change. Although both received considerable attention in previous studies, information on their interactive effects on ecosystem functioning is scarce. In particular, little is known on how soil biota and their functions are affected by combined changes in plant diversity and fertilization. METHODOLOGY/PRINCIPAL FINDINGS We investigated the effects of plant diversity, functional community composition, and fertilization on the biomass and respiration of soil microbial communities in a long-term biodiversity experiment in semi-natural grassland (Jena Experiment). Plant species richness enhanced microbial basal respiration and microbial biomass, but did not significantly affect microbial specific respiration. In contrast, the presence of legumes and fertilization significantly decreased microbial specific respiration, without altering microbial biomass. The effect of legumes was superimposed by fertilization as indicated by a significant interaction between the presence of legumes and fertilization. Further, changes in microbial stoichiometry (C-to-N ratio) and specific respiration suggest the presence of legumes to reduce N limitation of soil microorganisms and to modify microbial C use efficiency. CONCLUSIONS/SIGNIFICANCE Our study highlights the role of plant species and functional group diversity as well as interactions between plant community composition and fertilizer application for soil microbial functions. Our results suggest soil microbial stoichiometry to be a powerful indicator of microbial functioning under N limited conditions. Although our results support the notion that plant diversity and fertilizer application independently affect microbial functioning, legume effects on microbial N limitation were superimposed by fertilization, indicating significant interactions between the functional composition of plant communities and nutrient inputs for soil processes.
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Affiliation(s)
- Tanja Strecker
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Göttingen, Germany
- * E-mail:
| | - Romain L. Barnard
- INRA, UMR1347 Agroécologie, Dijon, France
- ETH Zurich, Zurich, Switzerland
| | - Pascal A. Niklaus
- ETH Zurich, Zurich, Switzerland
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | | | - Alexandra Weigelt
- Institute for Biology, University Leipzig, Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Göttingen, Germany
| | - Nico Eisenhauer
- Institute for Biology, University Leipzig, Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
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111
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Gschwendtner S, Leberecht M, Engel M, Kublik S, Dannenmann M, Polle A, Schloter M. Effects of Elevated Atmospheric CO2 on Microbial Community Structure at the Plant-Soil Interface of Young Beech Trees (Fagus sylvatica L.) Grown at Two Sites with Contrasting Climatic Conditions. MICROBIAL ECOLOGY 2015; 69:867-878. [PMID: 25370887 DOI: 10.1007/s00248-014-0527-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Accepted: 10/21/2014] [Indexed: 06/04/2023]
Abstract
Soil microbial community responses to elevated atmospheric CO2 concentrations (eCO2) occur mainly indirectly via CO2-induced plant growth stimulation leading to quantitative as well as qualitative changes in rhizodeposition and plant litter. In order to gain insight into short-term, site-specific effects of eCO2 on the microbial community structure at the plant-soil interface, young beech trees (Fagus sylvatica L.) from two opposing mountainous slopes with contrasting climatic conditions were incubated under ambient (360 ppm) CO2 concentrations in a greenhouse. One week before harvest, half of the trees were incubated for 2 days under eCO2 (1,100 ppm) conditions. Shifts in the microbial community structure in the adhering soil as well as in the root rhizosphere complex (RRC) were investigated via TRFLP and 454 pyrosequencing based on 16S ribosomal RNA (rRNA) genes. Multivariate analysis of the community profiles showed clear changes of microbial community structure between plants grown under ambient and elevated CO2 mainly in RRC. Both TRFLP and 454 pyrosequencing showed a significant decrease in the microbial diversity and evenness as a response of CO2 enrichment. While Alphaproteobacteria dominated by Rhizobiales decreased at eCO2, Betaproteobacteria, mainly Burkholderiales, remained unaffected. In contrast, Gammaproteobacteria and Deltaproteobacteria, predominated by Pseudomonadales and Myxococcales, respectively, increased at eCO2. Members of the order Actinomycetales increased, whereas within the phylum Acidobacteria subgroup Gp1 decreased, and the subgroups Gp4 and Gp6 increased under atmospheric CO2 enrichment. Moreover, Planctomycetes and Firmicutes, mainly members of Bacilli, increased under eCO2. Overall, the effect intensity of eCO2 on soil microbial communities was dependent on the distance to the roots. This effect was consistent for all trees under investigation; a site-specific effect of eCO2 in response to the origin of the trees was not observed.
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Affiliation(s)
- Silvia Gschwendtner
- Research Unit Environmental Genomics, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, 85764, Neuherberg, Germany
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112
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Hautier Y, Tilman D, Isbell F, Seabloom EW, Borer ET, Reich PB. Anthropogenic environmental changes affect ecosystem stability via biodiversity. Science 2015; 348:336-40. [DOI: 10.1126/science.aaa1788] [Citation(s) in RCA: 366] [Impact Index Per Article: 36.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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113
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Fungal communities respond to long-term CO2 elevation by community reassembly. Appl Environ Microbiol 2015; 81:2445-54. [PMID: 25616796 DOI: 10.1128/aem.04040-14] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
Fungal communities play a major role as decomposers in the Earth's ecosystems. Their community-level responses to elevated CO2 (eCO2), one of the major global change factors impacting ecosystems, are not well understood. Using 28S rRNA gene amplicon sequencing and co-occurrence ecological network approaches, we analyzed the response of soil fungal communities in the BioCON (biodiversity, CO2, and N deposition) experimental site in Minnesota, USA, in which a grassland ecosystem has been exposed to eCO2 for 12 years. Long-term eCO2 did not significantly change the overall fungal community structure and species richness, but significantly increased community evenness and diversity. The relative abundances of 119 operational taxonomic units (OTU; ∼27% of the total captured sequences) were changed significantly. Significantly changed OTU under eCO2 were associated with decreased overall relative abundance of Ascomycota, but increased relative abundance of Basidiomycota. Co-occurrence ecological network analysis indicated that eCO2 increased fungal community network complexity, as evidenced by higher intermodular and intramodular connectivity and shorter geodesic distance. In contrast, decreased connections for dominant fungal species were observed in the eCO2 network. Community reassembly of unrelated fungal species into highly connected dense modules was observed. Such changes in the co-occurrence network topology were significantly associated with altered soil and plant properties under eCO2, especially with increased plant biomass and NH4 (+) availability. This study provided novel insights into how eCO2 shapes soil fungal communities in grassland ecosystems.
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114
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Flooding disturbances increase resource availability and productivity but reduce stability in diverse plant communities. Nat Commun 2015; 6:6092. [DOI: 10.1038/ncomms7092] [Citation(s) in RCA: 94] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2014] [Accepted: 12/12/2014] [Indexed: 11/08/2022] Open
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115
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Hines J, van der Putten WH, De Deyn GB, Wagg C, Voigt W, Mulder C, Weisser WW, Engel J, Melian C, Scheu S, Birkhofer K, Ebeling A, Scherber C, Eisenhauer N. Towards an Integration of Biodiversity–Ecosystem Functioning and Food Web Theory to Evaluate Relationships between Multiple Ecosystem Services. ADV ECOL RES 2015. [DOI: 10.1016/bs.aecr.2015.09.001] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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116
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Steinauer K, Tilman D, Wragg PD, Cesarz S, Cowles JM, Pritsch K, Reich PB, Weisser WW, Eisenhauer N. Plant diversity effects on soil microbial functions and enzymes are stronger than warming in a grassland experiment. Ecology 2015; 96:99-112. [DOI: 10.1890/14-0088.1] [Citation(s) in RCA: 115] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Katja Steinauer
- Friedrich Schiller University Jena, Institute of Ecology, Dornburger Strasse 159, 07743 Jena, Germany
- Technische Universität München, Department of Ecology and Ecosystem Management, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, Germany
| | - David Tilman
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, Minnesota 55108 USA
| | - Peter D. Wragg
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, Minnesota 55108 USA
| | - Simone Cesarz
- Friedrich Schiller University Jena, Institute of Ecology, Dornburger Strasse 159, 07743 Jena, Germany
| | - Jane M. Cowles
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, Minnesota 55108 USA
| | - Karin Pritsch
- Institute of Soil Ecology, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
| | - Peter B. Reich
- Department of Forest Resources, University of Minnesota, 1530 Cleveland Avenue North, St. Paul, Minnesota 55108 USA
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, New South Wales 2753 Australia
| | - Wolfgang W. Weisser
- Technische Universität München, Department of Ecology and Ecosystem Management, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, Germany
| | - Nico Eisenhauer
- Friedrich Schiller University Jena, Institute of Ecology, Dornburger Strasse 159, 07743 Jena, Germany
- Technische Universität München, Department of Ecology and Ecosystem Management, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, Germany
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117
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Carnicer J, Sardans J, Stefanescu C, Ubach A, Bartrons M, Asensio D, Peñuelas J. Global biodiversity, stoichiometry and ecosystem function responses to human-induced C-N-P imbalances. JOURNAL OF PLANT PHYSIOLOGY 2015; 172:82-91. [PMID: 25270104 PMCID: PMC6485510 DOI: 10.1016/j.jplph.2014.07.022] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 07/28/2014] [Indexed: 05/22/2023]
Abstract
Global change analyses usually consider biodiversity as a global asset that needs to be preserved. Biodiversity is frequently analysed mainly as a response variable affected by diverse environmental drivers. However, recent studies highlight that gradients of biodiversity are associated with gradual changes in the distribution of key dominant functional groups characterized by distinctive traits and stoichiometry, which in turn often define the rates of ecosystem processes and nutrient cycling. Moreover, pervasive links have been reported between biodiversity, food web structure, ecosystem function and species stoichiometry. Here we review current global stoichiometric gradients and how future distributional shifts in key functional groups may in turn influence basic ecosystem functions (production, nutrient cycling, decomposition) and therefore could exert a feedback effect on stoichiometric gradients. The C-N-P stoichiometry of most primary producers (phytoplankton, algae, plants) has been linked to functional trait continua (i.e. to major axes of phenotypic variation observed in inter-specific analyses of multiple traits). In contrast, the C-N-P stoichiometry of higher-level consumers remains less precisely quantified in many taxonomic groups. We show that significant links are observed between trait continua across trophic levels. In spite of recent advances, the future reciprocal feedbacks between key functional groups, biodiversity and ecosystem functions remain largely uncertain. The reported evidence, however, highlights the key role of stoichiometric traits and suggests the need of a progressive shift towards an ecosystemic and stoichiometric perspective in global biodiversity analyses.
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Affiliation(s)
- Jofre Carnicer
- Community and Conservation Ecology Group, Centre for Life Sciences, University of Groningen, The Netherlands.; CSIC, Global Ecology Unit, Cerdanyola del Valles, Barcelona, Catalonia 08193, Spain; Department of Ecology, University of Barcelona, Barcelona, Catalonia 08028, Spain..
| | - Jordi Sardans
- CREAF, Cerdanyola del Vallès, Barcelona, Catalonia 08193, Spain.; CSIC, Global Ecology Unit, Cerdanyola del Valles, Barcelona, Catalonia 08193, Spain
| | - Constantí Stefanescu
- CREAF, Cerdanyola del Vallès, Barcelona, Catalonia 08193, Spain.; CSIC, Global Ecology Unit, Cerdanyola del Valles, Barcelona, Catalonia 08193, Spain; Museu de Ciències Naturals de Granollers, Granollers, Catalonia 08402, Spain
| | - Andreu Ubach
- Department of Ecology, University of Barcelona, Barcelona, Catalonia 08028, Spain
| | - Mireia Bartrons
- CREAF, Cerdanyola del Vallès, Barcelona, Catalonia 08193, Spain.; CSIC, Global Ecology Unit, Cerdanyola del Valles, Barcelona, Catalonia 08193, Spain
| | - Dolores Asensio
- CREAF, Cerdanyola del Vallès, Barcelona, Catalonia 08193, Spain.; CSIC, Global Ecology Unit, Cerdanyola del Valles, Barcelona, Catalonia 08193, Spain
| | - Josep Peñuelas
- CREAF, Cerdanyola del Vallès, Barcelona, Catalonia 08193, Spain.; CSIC, Global Ecology Unit, Cerdanyola del Valles, Barcelona, Catalonia 08193, Spain
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118
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McPhee J, Borden L, Bowles J, Henry HAL. Tallgrass prairie restoration: implications of increased atmospheric nitrogen deposition when site preparation minimizes adventive grasses. Restor Ecol 2014. [DOI: 10.1111/rec.12156] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jennifer McPhee
- Department of Biology; University of Western Ontario; London Ontario Canada
| | - Laura Borden
- Department of Biology; University of Western Ontario; London Ontario Canada
| | - Jane Bowles
- Department of Biology; University of Western Ontario; London Ontario Canada
| | - Hugh A. L. Henry
- Department of Biology; University of Western Ontario; London Ontario Canada
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119
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van Dobben HF, Wamelink GWW, Klimkowska A, Slim PA, van Til M. Year-round grazing to counteract effects of atmospheric nitrogen deposition may aggravate these effects. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2014; 195:226-231. [PMID: 25255971 DOI: 10.1016/j.envpol.2014.08.029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Revised: 08/25/2014] [Accepted: 08/28/2014] [Indexed: 06/03/2023]
Abstract
Excessive nitrogen input in natural ecosystems is a major threat to biodiversity. A coastal dune area near Amsterdam in the Netherlands suffers from high atmospheric nitrogen deposition affecting sensitive habitats such as fixed coastal dunes with herbaceous vegetation ('grey dunes'). To mitigate its effect year round grazing was applied from 2007 until 2012. In winter, when natural food supply is low, the cattle received supplementary hay that caused additional inputs of nitrogen. Estimates based on nitrogen contents of hay, as well as of manure, showed the input through winter feeding (c. 3-14 kg N ha(-1).y(-1)) is in the same order of magnitude as both the actual deposition (c. 17 kg N ha(-1).y(-1)) and the critical load for a number of herbaceous habitat types (10-15 kg N ha(-1).y(-1)). Locally, the effect of winter feeding adds to the effect of nitrogen redistribution within the area caused by the cattle's terrain usage. We conclude that winter feeding may aggravate effects of atmospheric nitrogen deposition.
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Affiliation(s)
- H F van Dobben
- Alterra, Wageningen University and Research Centre, POB 47, NL-6700 AA Wageningen, The Netherlands.
| | - G W W Wamelink
- Alterra, Wageningen University and Research Centre, POB 47, NL-6700 AA Wageningen, The Netherlands.
| | - A Klimkowska
- Alterra, Wageningen University and Research Centre, POB 47, NL-6700 AA Wageningen, The Netherlands.
| | - P A Slim
- Alterra, Wageningen University and Research Centre, POB 47, NL-6700 AA Wageningen, The Netherlands.
| | - M van Til
- Waternet, POB 94307, 1090 GJ Amsterdam, The Netherlands.
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120
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Wright A, Schnitzer SA, Reich PB. Living close to your neighbors: the importance of both competition and facilitation in plant communities. Ecology 2014; 95:2213-23. [PMID: 25230472 DOI: 10.1890/13-1855.1] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Recent work has demonstrated that competition and facilitation likely operate jointly in plant communities, but teasing out the relative role of each has proven difficult. Here we address how competition and facilitation vary with seasonal fluctuations in environmental conditions, and how the effects of these fluctuations change with plant ontogeny. We planted three sizes of pine seedlings (Pinus strobus) into an herbaceous diversity experiment and measured pine growth every two weeks for two growing seasons. Both competition and facilitation occurred at different times of year between pines and their neighbors. Facilitation was important for the smallest pines when environmental conditions were severe. This effect decreased as pines got larger. Competition was stronger than facilitation overall and outweighed facilitative effects at annual time scales. Our data suggest that both competition and the counter-directional effects of facilitation may be more common and more intense than previously considered.
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121
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Lemanski K, Scheu S. Fertilizer addition lessens the flux of microbial carbon to higher trophic levels in soil food webs of grassland. Oecologia 2014; 176:487-96. [DOI: 10.1007/s00442-014-3037-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2014] [Accepted: 08/05/2014] [Indexed: 12/01/2022]
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122
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Wamelink GWW, Goedhart PW, Frissel JY. Why some plant species are rare. PLoS One 2014; 9:e102674. [PMID: 25054424 PMCID: PMC4108336 DOI: 10.1371/journal.pone.0102674] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2014] [Accepted: 06/22/2014] [Indexed: 12/02/2022] Open
Abstract
Biodiversity, including plant species diversity, is threatened worldwide as a result of anthropogenic pressures such as an increase of pollutants and climate change. Rare species in particular are on the verge of becoming extinct. It is still unclear as to why some plant species are rare and others are not. Are they rare due to: intrinsic reasons, dispersal capacity, the effects of management or abiotic circumstances? Habitat preference of rare plant species may play an important role in determining why some species are rare. Based on an extensive data set of soil parameters we investigated if rarity is due to a narrow habitat preference for abiotic soil parameters. For 23 different abiotic soil parameters, of which the most influential were groundwater-table, soil-pH and nutrient-contents, we estimated species responses for common and rare species. Based on the responses per species we calculated the range of occurrence, the range between the 5 and 95 percentile of the response curve giving the habitat preference. Subsequently, we calculated the average response range for common and rare species. In addition, we designed a new graphic in order to provide a better means for presentation of the results. The habitat preferences of rare species for abiotic soil conditions are significantly narrower than for common species. Twenty of the twenty-three abiotic parameters showed on average significantly narrower habitat preferences for rare species than for common species; none of the abiotic parameters showed on average a narrower habitat preference for common species. The results have major implications for the conservation of rare plant species; accordingly management and nature development should be focussed on the maintenance and creation of a broad range of environmental conditions, so that the requirements of rare species are met. The conservation of (abiotic) gradients within ecosystems is particularly important for preserving rare species.
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123
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Cook-Patton SC, Agrawal AA. Exotic plants contribute positively to biodiversity functions but reduce native seed production and arthropod richness. Ecology 2014; 95:1642-50. [PMID: 25039228 DOI: 10.1890/13-0782.1] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Although exotic plants comprise a substantial portion of floristic biodiversity, their contributions to community and ecosystem processes are not well understood. We manipulated plant species richness in old-field communities to compare the impacts of native vs. exotic species on plant biomass, seed production, and arthropod community structure. Plants within diverse communities, regardless of whether they were native or exotic, had higher biomass and seed production than in monocultures and displayed positive complementarity. Increasing native or exotic plant richness also enhanced the richness of arthropods on plants, but exotics attracted fewer arthropod species for a given arthropod abundance than did natives. Additionally, when exotic and native plants grew together, exotics suppressed seed production of native species. Thus, exotic plants appear to contribute positively to some biodiversity functions, but may impact native communities over longer time frames by reducing native seed production and recruiting fewer arthropod species.
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124
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Farrer EC, Ashton IW, Knape J, Suding KN. Separating direct and indirect effects of global change: a population dynamic modeling approach using readily available field data. GLOBAL CHANGE BIOLOGY 2014; 20:1238-1250. [PMID: 24115317 DOI: 10.1111/gcb.12401] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Accepted: 09/03/2013] [Indexed: 06/02/2023]
Abstract
Two sources of complexity make predicting plant community response to global change particularly challenging. First, realistic global change scenarios involve multiple drivers of environmental change that can interact with one another to produce non-additive effects. Second, in addition to these direct effects, global change drivers can indirectly affect plants by modifying species interactions. In order to tackle both of these challenges, we propose a novel population modeling approach, requiring only measurements of abundance and climate over time. To demonstrate the applicability of this approach, we model population dynamics of eight abundant plant species in a multifactorial global change experiment in alpine tundra where we manipulated nitrogen, precipitation, and temperature over 7 years. We test whether indirect and interactive effects are important to population dynamics and whether explicitly incorporating species interactions can change predictions when models are forecast under future climate change scenarios. For three of the eight species, population dynamics were best explained by direct effect models, for one species neither direct nor indirect effects were important, and for the other four species indirect effects mattered. Overall, global change had negative effects on species population growth, although species responded to different global change drivers, and single-factor effects were slightly more common than interactive direct effects. When the fitted population dynamic models were extrapolated under changing climatic conditions to the end of the century, forecasts of community dynamics and diversity loss were largely similar using direct effect models that do not explicitly incorporate species interactions or best-fit models; however, inclusion of species interactions was important in refining the predictions for two of the species. The modeling approach proposed here is a powerful way of analyzing readily available datasets which should be added to our toolbox to tease apart complex drivers of global change.
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Affiliation(s)
- Emily C Farrer
- Department of Environmental Science, Policy & Management, University of California, Berkeley, 94720, CA, USA
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125
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Tu Q, Yu H, He Z, Deng Y, Wu L, Van Nostrand JD, Zhou A, Voordeckers J, Lee YJ, Qin Y, Hemme CL, Shi Z, Xue K, Yuan T, Wang A, Zhou J. GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis. Mol Ecol Resour 2014; 14:914-28. [PMID: 24520909 DOI: 10.1111/1755-0998.12239] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2013] [Revised: 02/02/2014] [Accepted: 02/05/2014] [Indexed: 01/21/2023]
Abstract
Micro-organisms play critical roles in many important biogeochemical processes in the Earth's biosphere. However, understanding and characterizing the functional capacity of microbial communities are still difficult due to the extremely diverse and often uncultivable nature of most micro-organisms. In this study, we developed a new functional gene array, GeoChip 4, for analysing the functional diversity, composition, structure, metabolic potential/activity and dynamics of microbial communities. GeoChip 4 contained approximately 82 000 probes covering 141 995 coding sequences from 410 functional gene families related to microbial carbon (C), nitrogen (N), sulphur (S), and phosphorus (P) cycling, energy metabolism, antibiotic resistance, metal resistance/reduction, organic remediation, stress responses, bacteriophage and virulence. A total of 173 archaeal, 4138 bacterial, 404 eukaryotic and 252 viral strains were targeted, providing the ability to analyse targeted functional gene families of micro-organisms included in all four domains. Experimental assessment using different amounts of DNA suggested that as little as 500 ng environmental DNA was required for good hybridization, and the signal intensities detected were well correlated with the DNA amount used. GeoChip 4 was then applied to study the effect of long-term warming on soil microbial communities at a Central Oklahoma site, with results indicating that microbial communities respond to long-term warming by enriching carbon degradation, nutrient cycling (nitrogen and phosphorous) and stress response gene families. To the best of our knowledge, GeoChip 4 is the most comprehensive functional gene array for microbial community analysis.
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Affiliation(s)
- Qichao Tu
- Department of Microbiology and Plant Biology, Institute for Environmental Genomics (IEG), University of Oklahoma, Norman, OK, 73019, USA
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126
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He Z, Xiong J, Kent AD, Deng Y, Xue K, Wang G, Wu L, Van Nostrand JD, Zhou J. Distinct responses of soil microbial communities to elevated CO2 and O3 in a soybean agro-ecosystem. THE ISME JOURNAL 2014; 8:714-726. [PMID: 24108327 PMCID: PMC3930317 DOI: 10.1038/ismej.2013.177] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2013] [Revised: 08/01/2013] [Accepted: 09/06/2013] [Indexed: 11/08/2022]
Abstract
The concentrations of atmospheric carbon dioxide (CO2) and tropospheric ozone (O3) have been rising due to human activities. However, little is known about how such increases influence soil microbial communities. We hypothesized that elevated CO2 (eCO2) and elevated O3 (eO3) would significantly affect the functional composition, structure and metabolic potential of soil microbial communities, and that various functional groups would respond to such atmospheric changes differentially. To test these hypotheses, we analyzed 96 soil samples from a soybean free-air CO2 enrichment (SoyFACE) experimental site using a comprehensive functional gene microarray (GeoChip 3.0). The results showed the overall functional composition and structure of soil microbial communities shifted under eCO2, eO3 or eCO2+eO3. Key functional genes involved in carbon fixation and degradation, nitrogen fixation, denitrification and methane metabolism were stimulated under eCO2, whereas those involved in N fixation, denitrification and N mineralization were suppressed under eO3, resulting in the fact that the abundance of some eO3-supressed genes was promoted to ambient, or eCO2-induced levels by the interaction of eCO2+eO3. Such effects appeared distinct for each treatment and significantly correlated with soil properties and soybean yield. Overall, our analysis suggests possible mechanisms of microbial responses to global atmospheric change factors through the stimulation of C and N cycling by eCO2, the inhibition of N functional processes by eO3 and the interaction by eCO2 and eO3. This study provides new insights into our understanding of microbial functional processes in response to global atmospheric change in soybean agro-ecosystems.
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Affiliation(s)
- Zhili He
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, the University of Oklahoma, Norman, OK, USA.
| | - Jinbo Xiong
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, the University of Oklahoma, Norman, OK, USA
- Faculty of Marine Sciences, Ningbo University, Ningbo, China
| | - Angela D Kent
- Department of Natural Resources and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Ye Deng
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, the University of Oklahoma, Norman, OK, USA
| | - Kai Xue
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, the University of Oklahoma, Norman, OK, USA
| | - Gejiao Wang
- State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Liyou Wu
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, the University of Oklahoma, Norman, OK, USA
| | - Joy D Van Nostrand
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, the University of Oklahoma, Norman, OK, USA
| | - Jizhong Zhou
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, the University of Oklahoma, Norman, OK, USA.
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
- Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
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127
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Biotic vs. abiotic control of decomposition: a comparison of the effects of simulated extinctions and changes in temperature. PLoS One 2014; 9:e87426. [PMID: 24466351 PMCID: PMC3900723 DOI: 10.1371/journal.pone.0087426] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2013] [Accepted: 12/24/2013] [Indexed: 12/02/2022] Open
Abstract
The loss of species is known to have significant effects on ecosystem functioning, but only recently has it been recognized that species loss might rival the effects of other forms of environmental change on ecosystem processes. There is a need for experimental studies that explicitly manipulate species richness and environmental factors concurrently to determine their relative impacts on key ecosystem processes such as plant litter decomposition. It is crucial to understand what factors affect the rate of plant litter decomposition and the relative magnitude of such effects because the rate at which plant litter is lost and transformed to other forms of organic and inorganic carbon determines the capacity for carbon storage in ecosystems and the rate at which greenhouse gasses such as carbon dioxide are outgassed. Here we compared how an increase in water temperature of 5°C and loss of detritivorous invertebrate and plant litter species affect decomposition rates in a laboratory experiment simulating stream conditions. Like some prior studies, we found that species identity, rather than species richness per se, is a key driver of decomposition, but additionally we showed that the loss of particular species can equal or exceed temperature change in its impact on decomposition. Our results indicate that the loss of particular species can be as important a driver of decomposition as substantial temperature change, but also that predicting the relative consequences of species loss and other forms of environmental change on decomposition requires knowledge of assemblages and their constituent species' ecology and ecophysiology.
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128
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Lau JA, Shaw RG, Reich PB, Tiffin P. Indirect effects drive evolutionary responses to global change. THE NEW PHYTOLOGIST 2014; 201:335-343. [PMID: 24102351 DOI: 10.1111/nph.12490] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2013] [Accepted: 07/30/2013] [Indexed: 06/02/2023]
Abstract
Anthropogenic environmental changes pose significant threats to plant and animal populations. These changes also may affect the evolution of natural populations either directly or indirectly by altering the outcome of species interactions that are important drivers of evolution. This latter indirect pathway may be especially important for evolutionary responses to elevated atmospheric CO2 concentrations (eCO2), which appear to have minimal direct effects on plant evolution but have large effects on interspecific interactions, such as competition. We manipulated competitive and CO2 environments of experimental Arabidopsis thaliana populations to test whether eCO2 alters evolutionary trajectories indirectly by altering selection imposed by competitors. We found that interspecific competition increased selection on growth traits, reduced heritabilities, and altered genetic covariances between traits and that the magnitude of these effects depended upon the CO2 environment. Although eCO2 had minimal direct effects on evolutionary processes, eCO2 typically reduced the strength of selection imposed by competitors and, therefore, relaxed selection on plant traits when competitors were present. Our results indicate that global changes may affect plant evolution indirectly by altering competitive interactions and underscore the importance of conducting research in natural communities when attempting to predict population responses to global change.
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Affiliation(s)
- Jennifer A Lau
- Department of Plant Biology, University of Minnesota, St Paul, MN, 55108, USA
- Kellogg Biological Station and Department of Plant Biology, Michigan State University, 3700 E Gull Lake Dr., Hickory Corners, MI, 49060, USA
| | - Ruth G Shaw
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN, 55108, USA
| | - Peter B Reich
- Department of Forestry, University of Minnesota, St Paul, MN, 55108, USA
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, NSW, 2751, Australia
| | - Peter Tiffin
- Department of Plant Biology, University of Minnesota, St Paul, MN, 55108, USA
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129
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Tobner CM, Paquette A, Reich PB, Gravel D, Messier C. Advancing biodiversity-ecosystem functioning science using high-density tree-based experiments over functional diversity gradients. Oecologia 2013; 174:609-21. [PMID: 24241640 DOI: 10.1007/s00442-013-2815-4] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2013] [Accepted: 10/21/2013] [Indexed: 10/26/2022]
Abstract
Increasing concern about loss of biodiversity and its effects on ecosystem functioning has triggered a series of manipulative experiments worldwide, which have demonstrated a general trend for ecosystem functioning to increase with diversity. General mechanisms proposed to explain diversity effects include complementary resource use and invoke a key role for species' functional traits. The actual mechanisms by which complementary resource use occurs remain, however, poorly understood, as well as whether they apply to tree-dominated ecosystems. Here we present an experimental approach offering multiple innovative aspects to the field of biodiversity-ecosystem functioning (BEF) research. The International Diversity Experiment Network with Trees (IDENT) allows research to be conducted at several hierarchical levels within individuals, neighborhoods, and communities. The network investigates questions related to intraspecific trait variation, complementarity, and environmental stress. The goal of IDENT is to identify some of the mechanisms through which individuals and species interact to promote coexistence and the complementary use of resources. IDENT includes several implemented and planned sites in North America and Europe, and uses a replicated design of high-density tree plots of fixed species-richness levels varying in functional diversity (FD). The design reduces the space and time needed for trees to interact allowing a thorough set of mixtures varying over different diversity gradients (specific, functional, phylogenetic) and environmental conditions (e.g., water stress) to be tested in the field. The intention of this paper is to share the experience in designing FD-focused BEF experiments with trees, to favor collaborations and expand the network to different conditions.
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Affiliation(s)
- Cornelia M Tobner
- Center for Forest Research, Université du Québec à Montréal, P.O. Box 8888, Centre-Ville Station, Montreal, H3C 3P8, Canada
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130
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Cardinale BJ, Gross K, Fritschie K, Flombaum P, Fox JW, Rixen C, van Ruijven J, Reich PB, Scherer-Lorenzen M, Wilsey BJ. Biodiversity simultaneously enhances the production and stability of community biomass, but the effects are independent. Ecology 2013; 94:1697-707. [PMID: 24015514 DOI: 10.1890/12-1334.1] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
To predict the ecological consequences of biodiversity loss, researchers have spent much time and effort quantifying how biological variation affects the magnitude and stability of ecological processes that underlie the functioning of ecosystems. Here we add to this work by looking at how biodiversity jointly impacts two aspects of ecosystem functioning at once: (1) the production of biomass at any single point in time (biomass/area or biomass/ volume), and (2) the stability of biomass production through time (the CV of changes in total community biomass through time). While it is often assumed that biodiversity simultaneously enhances both of these aspects of ecosystem functioning, the joint distribution of data describing how species richness regulates productivity and stability has yet to be quantified. Furthermore, analyses have yet to examine how diversity effects on production covary with diversity effects on stability. To overcome these two gaps, we reanalyzed the data from 34 experiments that have manipulated the richness of terrestrial plants or aquatic algae and measured how this aspect of biodiversity affects community biomass at multiple time points. Our reanalysis confirms that biodiversity does indeed simultaneously enhance both the production and stability of biomass in experimental systems, and this is broadly true for terrestrial and aquatic primary producers. However, the strength of diversity effects on biomass production is independent of diversity effects on temporal stability. The independence of effect sizes leads to two important conclusions. First, while it may be generally true that biodiversity enhances both productivity and stability, it is also true that the highest levels of productivity in a diverse community are not associated with the highest levels of stability. Thus, on average, diversity does not maximize the various aspects of ecosystem functioning we might wish to achieve in conservation and management. Second, knowing how biodiversity affects productivity gives no information about how diversity affects stability (or vice versa). Therefore, to predict the ecological changes that occur in ecosystems after extinction, we will need to develop separate mechanistic models for each independent aspect of ecosystem functioning.
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Affiliation(s)
- Bradley J Cardinale
- School of Natural Resources and Environment, University of Michigan, Ann Arbor, Michigan 48109, USA.
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131
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Uematsu Y, Ushimaru A. Topography- and management-mediated resource gradients maintain rare and common plant diversity around paddy terraces. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2013; 23:1357-1366. [PMID: 24147408 DOI: 10.1890/12-1939.1] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Examining the causes of interspecific differences in susceptibility to bidirectional land-use changes (land abandonment and use-intensification) is important for understanding the mechanisms of global biodiversity loss in agricultural landscapes. We tested the hypothesis that rare (endangered) plant species prefer wet and oligotrophic areas within topography- and management-mediated resource (soil water content, nutrient, and aboveground biomass) gradients, making them more susceptible to both abandonment and use-intensification of agricultural lands. We demonstrated that topography and management practices generated resource gradients in seminatural grasslands around traditional paddy terraces. Terraced topography and management practices produced a soil moisture gradient within levees and a nutrient gradient within paddy terraces. Both total and rare species diversity increased with soil water content. Total species diversity increased in more eutrophied areas with low aboveground biomass, whereas rare species diversity was high under oligotrophic conditions. Rare and common species were differentially distributed along the human-induced nutrient gradient, with rare species preferring wet, nutrient-poor environments in the agricultural landscapes studied. We suggest that conservation efforts should concentrate on wet, nutrient-poor areas within such landscapes, which can be located easily using land-use and topography maps. This strategy would reduce the costs of finding and conserving rare grassland species in a given agricultural landscape.
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Affiliation(s)
- Yuta Uematsu
- Graduate School of Human Development and Environment, Kobe University, 3-11 Tsurukabuto, Kobe 657 8501, Japan
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132
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Vogel A, Eisenhauer N, Weigelt A, Scherer-Lorenzen M. Plant diversity does not buffer drought effects on early-stage litter mass loss rates and microbial properties. GLOBAL CHANGE BIOLOGY 2013; 19:2795-803. [PMID: 23606531 DOI: 10.1111/gcb.12225] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2013] [Accepted: 04/01/2013] [Indexed: 05/12/2023]
Abstract
Human activities are decreasing biodiversity and changing the climate worldwide. Both global change drivers have been shown to affect ecosystem functioning, but they may also act in concert in a non-additive way. We studied early-stage litter mass loss rates and soil microbial properties (basal respiration and microbial biomass) during the summer season in response to plant species richness and summer drought in a large grassland biodiversity experiment, the Jena Experiment, Germany. In line with our expectations, decreasing plant diversity and summer drought decreased litter mass loss rates and soil microbial properties. In contrast to our hypotheses, however, this was only true for mass loss of standard litter (wheat straw) used in all plots, and not for plant community-specific litter mass loss. We found no interactive effects between global change drivers, that is, drought reduced litter mass loss rates and soil microbial properties irrespective of plant diversity. High mass loss rates of plant community-specific litter and low responsiveness to drought relative to the standard litter indicate that soil microbial communities were adapted to decomposing community-specific plant litter material including lower susceptibility to dry conditions during summer months. Moreover, higher microbial enzymatic diversity at high plant diversity may have caused elevated mass loss of standard litter. Our results indicate that plant diversity loss and summer drought independently impede soil processes. However, soil decomposer communities may be highly adapted to decomposing plant community-specific litter material, even in situations of environmental stress. Results of standard litter mass loss moreover suggest that decomposer communities under diverse plant communities are able to cope with a greater variety of plant inputs possibly making them less responsive to biotic changes.
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Affiliation(s)
- Anja Vogel
- Institute of Ecology, University of Jena, Jena, Germany.
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133
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Nutrient enrichment, biodiversity loss, and consequent declines in ecosystem productivity. Proc Natl Acad Sci U S A 2013; 110:11911-6. [PMID: 23818582 DOI: 10.1073/pnas.1310880110] [Citation(s) in RCA: 298] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Anthropogenic drivers of environmental change often have multiple effects, including changes in biodiversity, species composition, and ecosystem functioning. It remains unknown whether such shifts in biodiversity and species composition may, themselves, be major contributors to the total, long-term impacts of anthropogenic drivers on ecosystem functioning. Moreover, although numerous experiments have shown that random losses of species impact the functioning of ecosystems, human-caused losses of biodiversity are rarely random. Here we use results from long-term grassland field experiments to test for direct effects of chronic nutrient enrichment on ecosystem productivity, and for indirect effects of enrichment on productivity mediated by resultant species losses. We found that ecosystem productivity decreased through time most in plots that lost the most species. Chronic nitrogen addition also led to the nonrandom loss of initially dominant native perennial C4 grasses. This loss of dominant plant species was associated with twice as great a loss of productivity per lost species than occurred with random species loss in a nearby biodiversity experiment. Thus, although chronic nitrogen enrichment initially increased productivity, it also led to loss of plant species, including initially dominant species, which then caused substantial diminishing returns from nitrogen fertilization. In contrast, elevated CO2 did not decrease grassland plant diversity, and it consistently promoted productivity over time. Our results support the hypothesis that the long-term impacts of anthropogenic drivers of environmental change on ecosystem functioning can strongly depend on how such drivers gradually decrease biodiversity and restructure communities.
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134
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Ali AA, Medlyn BE, Crous KY, Reich PB. A trait-based ecosystem model suggests that long-term responsiveness to rising atmospheric CO2concentration is greater in slow-growing than fast-growing plants. Funct Ecol 2013. [DOI: 10.1111/1365-2435.12102] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Ashehad A. Ali
- Department of Biological Sciences; Faculty of Science; Macquarie University; North Ryde; New South Wales; 2109; Australia
| | - Belinda E. Medlyn
- Department of Biological Sciences; Faculty of Science; Macquarie University; North Ryde; New South Wales; 2109; Australia
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135
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Xu M, He Z, Deng Y, Wu L, van Nostrand JD, Hobbie SE, Reich PB, Zhou J. Elevated CO₂ influences microbial carbon and nitrogen cycling. BMC Microbiol 2013; 13:124. [PMID: 23718284 PMCID: PMC3679978 DOI: 10.1186/1471-2180-13-124] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2013] [Accepted: 05/24/2013] [Indexed: 11/10/2022] Open
Abstract
Background Elevated atmospheric CO2 (eCO2) has been shown to have significant effects on terrestrial ecosystems. However, little is known about its influence on the structure, composition, and functional potential of soil microbial communities, especially carbon (C) and nitrogen (N) cycling. A high-throughput functional gene array (GeoChip 3.0) was used to examine the composition, structure, and metabolic potential of soil microbial communities from a grassland field experiment after ten-year field exposure to ambient and elevated CO2 concentrations. Results Distinct microbial communities were established under eCO2. The abundance of three key C fixation genes encoding ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco), carbon monoxide dehydrogenase (CODH) and propionyl-CoA/acetyl-CoA carboxylase (PCC/ACC), significantly increased under eCO2, and so did some C degrading genes involved in starch, cellulose, and hemicellulose. Also, nifH and nirS involved in N cycling were significantly stimulated. In addition, based on variation partitioning analysis (VPA), the soil microbial community structure was largely shaped by direct and indirect eCO2-driven factors. Conclusions These findings suggest that the soil microbial community structure and their ecosystem functioning for C and N cycling were altered dramatically at eCO2. This study provides new insights into our understanding of the feedback response of soil microbial communities to elevated CO2 and global change.
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Affiliation(s)
- Meiying Xu
- State Key Laboratory of Applied Microbiology, Ministry-Guangdong Province Jointly Breeding Base, South China, Guangdong Institute of Microbiology, Guangzhou, China.
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136
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Plant diversity effects on soil food webs are stronger than those of elevated CO2 and N deposition in a long-term grassland experiment. Proc Natl Acad Sci U S A 2013; 110:6889-94. [PMID: 23576722 DOI: 10.1073/pnas.1217382110] [Citation(s) in RCA: 102] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Recent metaanalyses suggest biodiversity loss affects the functioning of ecosystems to a similar extent as other global environmental change agents. However, the abundance and functioning of soil organisms have been hypothesized to be much less responsive to such changes, particularly in plant diversity, than aboveground variables, although tests of this hypothesis are extremely rare. We examined the responses of soil food webs (soil microorganisms, nematodes, microarthropods) to 13-y manipulation of multiple environmental factors that are changing at global scales--specifically plant species richness, atmospheric CO2, and N deposition--in a grassland experiment in Minnesota. Plant diversity was a strong driver of the structure and functioning of soil food webs through several bottom-up (resource control) effects, whereas CO2 and N only had modest effects. We found few interactions between plant diversity and CO2 and N, likely because of weak interactive effects of those factors on resource availability (e.g., root biomass). Plant diversity effects likely were large because high plant diversity promoted the accumulation of soil organic matter in the site's sandy, organic matter-poor soils. Plant diversity effects were not explained by the presence of certain plant functional groups. Our results underline the prime importance of plant diversity loss cascading to soil food webs (density and diversity of soil organisms) and functions. Because the present results suggest prevailing plant diversity effects and few interactions with other global change drivers, protecting plant diversity may be of high priority to maintain the biodiversity and functioning of soils in a changing world.
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137
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Mueller KE, Hobbie SE, Tilman D, Reich PB. Effects of plant diversity, N fertilization, and elevated carbon dioxide on grassland soil N cycling in a long-term experiment. GLOBAL CHANGE BIOLOGY 2013; 19:1249-1261. [PMID: 23504900 DOI: 10.1111/gcb.12096] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2012] [Revised: 10/23/2012] [Accepted: 10/24/2012] [Indexed: 06/01/2023]
Abstract
The effects of global environmental changes on soil nitrogen (N) pools and fluxes have consequences for ecosystem functions such as plant productivity and N retention. In a 13-year grassland experiment, we evaluated how elevated atmospheric carbon dioxide (CO2 ), N fertilization, and plant species richness alter soil N cycling. We focused on soil inorganic N pools, including ammonium and nitrate, and two N fluxes, net N mineralization and net nitrification. In contrast with existing hypotheses, such as progressive N limitation, and with observations from other, often shorter, studies, elevated CO2 had relatively static and small, or insignificant, effects on soil inorganic N pools and fluxes. Nitrogen fertilization had inconsistent effects on soil N transformations, but increased soil nitrate and ammonium concentrations. Plant species richness had increasingly positive effects on soil N transformations over time, likely because in diverse subplots the concentrations of N in roots increased over time. Species richness also had increasingly positive effects on concentrations of ammonium in soil, perhaps because more carbon accumulated in soils of diverse subplots, providing exchange sites for ammonium. By contrast, subplots planted with 16 species had lower soil nitrate concentrations than less diverse subplots, especially when fertilized, probably due to greater N uptake capacity of subplots with 16 species. Monocultures of different plant functional types had distinct effects on N transformations and nitrate concentrations, such that not all monocultures differed from diverse subplots in the same manner. The first few years of data would not have adequately forecast the effects of N fertilization and diversity on soil N cycling in later years; therefore, the dearth of long-term manipulations of plant species richness and N inputs is a hindrance to forecasting the state of the soil N cycle and ecosystem functions in extant plant communities.
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Affiliation(s)
- Kevin E Mueller
- Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN 55108, USA.
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138
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Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JBH. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology 2013; 94:714-25. [DOI: 10.1890/12-1243.1] [Citation(s) in RCA: 281] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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139
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Behl S, Schryver V, Diehl S, Stibor H. Trophic transfer of biodiversity effects: functional equivalence of prey diversity and enrichment? Ecol Evol 2013; 2:3110-22. [PMID: 23301176 PMCID: PMC3539004 DOI: 10.1002/ece3.415] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2012] [Revised: 09/28/2012] [Accepted: 10/03/2012] [Indexed: 11/11/2022] Open
Abstract
Producer diversity is frequently assumed to be detrimental to herbivores, because less edible taxa are more likely to dominate diverse communities. Many producers are, however, complementary in their resource use, and primary production is often positively related to producer diversity. We performed an experiment with microalgae and a generalist herbivore to explore the hypothesis that such positive effects are transferred up the food chain and are functionally comparable to effects of enrichment with a limiting resource. In both absence and presence of grazers, primary production was positively affected by both light supply and producer diversity. Survival, reproduction, and biomass of herbivores were also positively affected by light supply and producer diversity, with both factors contributing equally to grazer performance. We conclude that producer diversity can indeed have similar positive effects on secondary production as enrichment with a limiting resource and discuss conditions under which such positive effects are likely to dominate over negative ones.
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Affiliation(s)
- Stephan Behl
- Department Biology II, Aquatic Ecology, Ludwig-Maximilians-Universität München Großhaderner Straße 2, 82152, Planegg-Martinsried, Germany
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140
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Clark CM, Flynn DFB, Butterfield BJ, Reich PB. Testing the link between functional diversity and ecosystem functioning in a Minnesota grassland experiment. PLoS One 2012; 7:e52821. [PMID: 23300787 PMCID: PMC3534119 DOI: 10.1371/journal.pone.0052821] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2012] [Accepted: 11/22/2012] [Indexed: 11/18/2022] Open
Abstract
The functional diversity of a community can influence ecosystem functioning and reflects assembly processes. The large number of disparate metrics used to quantify functional diversity reflects the range of attributes underlying this concept, generally summarized as functional richness, functional evenness, and functional divergence. However, in practice, we know very little about which attributes drive which ecosystem functions, due to a lack of field-based tests. Here we test the association between eight leading functional diversity metrics (Rao's Q, FD, FDis, FEve, FDiv, convex hull volume, and species and functional group richness) that emphasize different attributes of functional diversity, plus 11 extensions of these existing metrics that incorporate heterogeneous species abundances and trait variation. We assess the relationships among these metrics and compare their performances for predicting three key ecosystem functions (above- and belowground biomass and light capture) within a long-term grassland biodiversity experiment. Many metrics were highly correlated, although unique information was captured in FEve, FDiv, and dendrogram-based measures (FD) that were adjusted by abundance. FD adjusted by abundance outperformed all other metrics in predicting both above- and belowground biomass, although several others also performed well (e.g. Rao's Q, FDis, FDiv). More generally, trait-based richness metrics and hybrid metrics incorporating multiple diversity attributes outperformed evenness metrics and single-attribute metrics, results that were not changed when combinations of metrics were explored. For light capture, species richness alone was the best predictor, suggesting that traits for canopy architecture would be necessary to improve predictions. Our study provides a comprehensive test linking different attributes of functional diversity with ecosystem function for a grassland system.
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Affiliation(s)
- Christopher M Clark
- School of Life Sciences and Global Institute of Sustainability, Arizona State University, Tempe, Arizona, United States of America.
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141
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García-Palacios P, Maestre FT, Bardgett RD, de Kroon H. Plant responses to soil heterogeneity and global environmental change. THE JOURNAL OF ECOLOGY 2012; 100:1303-1314. [PMID: 25914423 PMCID: PMC4407979 DOI: 10.1111/j.1365-2745.2012.02014.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Recent evidence suggests that soil nutrient heterogeneity, a ubiquitous feature of terrestrial ecosystems, modulates plant responses to ongoing global change (GC). However, we know little about the overall trends of such responses, the GC drivers involved, and the plant attributes affected.We synthesized literature to answer the question: Does soil heterogeneity significantly affect plant responses to main GC drivers, such as elevated atmospheric carbon dioxide concentration (CO2), nitrogen (N) enrichment and changes in rainfall regime?Overall, most studies have addressed short-term effects of N enrichment on the performance of model plant communities using experiments conducted under controlled conditions. The role of soil heterogeneity as a modulator of plant responses to elevated CO2 may depend on the plasticity in nutrient uptake patterns. Soil heterogeneity does interact with N enrichment to determine plant growth and nutrient status, but the outcome of this interaction has been found to be both synergistic and inhibitory. The very few studies published on interactive effects of soil heterogeneity and changes in rainfall regime prevented us from identifying any general pattern.We identify the long-term consequences of soil heterogeneity on plant community dynamics in the field, and the ecosystem level responses of the soil heterogeneity × GC driver interaction, as the main knowledge gaps in this area of research.In order to fill these gaps and take soil heterogeneity and GC research a step forward, we propose the following research guidelines: 1) combining morphological and physiological plant responses to soil heterogeneity with field observations of community composition and predictions from simulation models; and 2) incorporating soil heterogeneity into a trait-based response-effect framework, where plant resource-use traits are used as both response variables to this heterogeneity and GC, and predictors of ecosystem functioning.Synthesis. There is enough evidence to affirm that soil heterogeneity modulates plant responses to elevated atmospheric CO2 and N enrichment. Our synthesis indicates that we must explicitly consider soil heterogeneity to accurately predict plant responses to GC drivers.
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Affiliation(s)
- Pablo García-Palacios
- Natural Resource Ecology Laboratory, Colorado State University, Fort Collins, CO 80523, USA
- Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Fernando T. Maestre
- Área de Biodiversidad y Conservación, Departamento de Biología y Geología, Escuela Superior de Ciencias Experimentales y Tecnología, Universidad Rey Juan Carlos, c/Tulipán s/n, 28933 Móstoles, Spain
| | - Richard D. Bardgett
- Soil and Ecosystem Ecology Laboratory, Lancaster Environment Centre, Lancaster University, LA1 4YQ Lancaster, UK
| | - Hans de Kroon
- Department of Experimental Plant Ecology, Institute for Water and Wetland Research, Radboud University Nijmegen, 6500 GL Nijmegen, The Netherlands
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142
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Beynon SA, Mann DJ, Slade EM, Lewis OT. Species-rich dung beetle communities buffer ecosystem services in perturbed agro-ecosystems. J Appl Ecol 2012. [DOI: 10.1111/j.1365-2664.2012.02210.x] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Sarah A. Beynon
- Department of Zoology; University of Oxford; South Parks Road; Oxford; OX1 3PS; UK
| | - Darren J. Mann
- The Hope Entomological Collections; Oxford University Museum of Natural History; Parks Road; Oxford; OX1 3PW; UK
| | | | - Owen T. Lewis
- Department of Zoology; University of Oxford; South Parks Road; Oxford; OX1 3PS; UK
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143
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Wright A, Schnitzer SA, Dickie IA, Gunderson AR, Pinter GA, Mangan SA, Reich PB. Complex facilitation and competition in a temperate grassland: loss of plant diversity and elevated CO2 have divergent and opposite effects on oak establishment. Oecologia 2012; 171:449-58. [PMID: 22865092 DOI: 10.1007/s00442-012-2420-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2012] [Accepted: 07/16/2012] [Indexed: 10/28/2022]
Abstract
Encroachment of woody vegetation into grasslands is a widespread phenomenon that alters plant community composition and ecosystem function. Woody encroachment is often the result of fire suppression, but it may also be related to changes in resource availability associated with global environmental change. We tested the relative strength of three important global change factors (CO(2) enrichment, nitrogen deposition, and loss of herbaceous plant diversity) on the first 3 years of bur oak (Quercus macrocarpa) seedling performance in a field experiment in central Minnesota, USA. We found that loss of plant diversity decreased initial oak survival but increased overall oak growth. Conversely, elevated CO(2) increased initial oak seedling survival and reduced overall growth, especially at low levels of diversity. Nitrogen deposition surprisingly had no net effect on survival or growth. The magnitude of these effects indicates that long-term woody encroachment trends may be most strongly associated with those few individuals that survive, but grow much larger in lower diversity patches. Further, while the CO(2) results and the species richness results appear to describe opposing trends, this is due only to the fact that the natural drivers are moving in opposite directions (decreasing species richness and increasing CO(2)). Interestingly, the mechanisms that underlie both patterns are very similar, increased CO(2) and increased species richness both increase herbaceous biomass which (1) increases belowground competition for resources and (2) increases facilitation of early plant survival under a more diverse plant canopy; in other words, both competition and facilitation help determine community composition in these grasslands.
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Affiliation(s)
- Alexandra Wright
- Department of Biological Sciences, University of Wisconsin-Milwaukee, Lapham Hall, 3209 N. Maryland Ave., Milwaukee, WI 53211, USA.
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144
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Biodiversity impacts ecosystem productivity as much as resources, disturbance, or herbivory. Proc Natl Acad Sci U S A 2012; 109:10394-7. [PMID: 22689971 DOI: 10.1073/pnas.1208240109] [Citation(s) in RCA: 175] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Although the impacts of the loss of biodiversity on ecosystem functioning are well established, the importance of the loss of biodiversity relative to other human-caused drivers of environmental change remains uncertain. Results of 11 experiments show that ecologically relevant decreases in grassland plant diversity influenced productivity at least as much as ecologically relevant changes in nitrogen, water, CO(2), herbivores, drought, or fire. Moreover, biodiversity became an increasingly dominant driver of ecosystem productivity through time, whereas effects of other factors either declined (nitrogen addition) or remained unchanged (all others). In particular, a change in plant diversity from four to 16 species caused as large an increase in productivity as addition of 54 kg · ha(-1) · y(-1) of fertilizer N, and was as influential as removing a dominant herbivore, a major natural drought, water addition, and fire suppression. A change in diversity from one to 16 species caused a greater biomass increase than 95 kg · ha(-1) · y(-1) of N or any other treatment. Our conclusions are based on >7,000 productivity measurements from 11 long-term experiments (mean length, ~ 13 y) conducted at a single site with species from a single regional species pool, thus controlling for many potentially confounding factors. Our results suggest that the loss of biodiversity may have at least as great an impact on ecosystem functioning as other anthropogenic drivers of environmental change, and that use of diverse mixtures of species may be as effective in increasing productivity of some biomass crops as fertilization and may better provide ecosystem services.
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145
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Allison SD. A trait-based approach for modelling microbial litter decomposition. Ecol Lett 2012; 15:1058-70. [PMID: 22642621 DOI: 10.1111/j.1461-0248.2012.01807.x] [Citation(s) in RCA: 164] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2011] [Revised: 01/15/2012] [Accepted: 04/26/2012] [Indexed: 11/29/2022]
Abstract
Trait-based models are an emerging tool in ecology with the potential to link community dynamics, environmental responses and ecosystem processes. These models represent complex communities by defining taxa with trait combinations derived from prior distributions that may be constrained by trade-offs. Herein I develop a model that links microbial community composition with physiological and enzymatic traits to predict litter decomposition rates. This approach allows for trade-offs among traits that represent alternative microbial strategies for resource acquisition. The model predicts that optimal strategies depend on the level of enzyme production in the whole community, which determines resource availability and decomposition rates. There is also evidence for facilitation and competition among microbial taxa that co-occur on decomposing litter. These interactions vary with community investment in extracellular enzyme production and the magnitude of trade-offs affecting enzyme biochemical traits. The model accounted for 69% of the variation in decomposition rates of 15 Hawaiian litter types and up to 26% of the variation in enzyme activities. By explicitly representing diversity, trait-based models can predict ecosystem processes based on functional trait distributions in a community. The model developed herein illustrates that traits influencing microbial enzyme production are some of the key controls on litter decomposition rates.
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Affiliation(s)
- S D Allison
- Department of Ecology and Evolutionary Biology, Department of Earth System Science, University of California, Irvine, CA 92697, USA.
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Parasite diversity and coinfection determine pathogen infection success and host fitness. Proc Natl Acad Sci U S A 2012; 109:9006-11. [PMID: 22615371 DOI: 10.1073/pnas.1201790109] [Citation(s) in RCA: 129] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
While the importance of changes in host biodiversity for disease risk continues to gain empirical support, the influence of natural variation in parasite diversity on epidemiological outcomes remains largely overlooked. Here, we combined field infection data from 2,191 amphibian hosts representing 158 parasite assemblages with mechanistic experiments to evaluate the influence of parasite richness on both parasite transmission and host fitness. Using a guild of larval trematode parasites (six species) and an amphibian host, our experiments contrasted the effects of parasite richness vs. composition, observed vs. randomized assemblages, and additive vs. replacement designs. Consistent with the dilution effect hypothesis extended to intrahost diversity, increases in parasite richness reduced overall infection success, including infections by the most virulent parasite. However, the effects of parasite richness on host growth and survival were context dependent; pathology increased when parasites were administered additively, even when the presence of the most pathogenic species was held constant, but decreased when added species replaced or reduced virulent species, emphasizing the importance of community composition and assembly. These results were similar or stronger when community structures were weighted by their observed frequencies in nature. The field data also revealed the highly nested structure of parasite assemblages, with virulent species generally occupying basal positions, suggesting that increases in parasite richness and antagonism in nature will decrease virulent infections. Our findings emphasize the importance of parasite biodiversity and coinfection in affecting epidemiological responses and highlight the value of integrating research on biodiversity and community ecology for understanding infectious diseases.
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147
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Reich PB, Tilman D, Isbell F, Mueller K, Hobbie SE, Flynn DFB, Eisenhauer N. Impacts of biodiversity loss escalate through time as redundancy fades. Science 2012; 336:589-92. [PMID: 22556253 DOI: 10.1126/science.1217909] [Citation(s) in RCA: 396] [Impact Index Per Article: 30.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Plant diversity generally promotes biomass production, but how the shape of the response curve changes with time remains unclear. This is a critical knowledge gap because the shape of this relationship indicates the extent to which loss of the first few species will influence biomass production. Using two long-term (≥13 years) biodiversity experiments, we show that the effects of diversity on biomass productivity increased and became less saturating over time. Our analyses suggest that effects of diversity-dependent ecosystem feedbacks and interspecific complementarity accumulate over time, causing high-diversity species combinations that appeared functionally redundant during early years to become more functionally unique through time. Consequently, simplification of diverse ecosystems will likely have greater negative impacts on ecosystem functioning than has been suggested by short-term experiments.
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Affiliation(s)
- Peter B Reich
- Department of Forest Resources, University of Minnesota, St. Paul, MN 55108, USA
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148
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149
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A global synthesis reveals biodiversity loss as a major driver of ecosystem change. Nature 2012; 486:105-8. [PMID: 22678289 DOI: 10.1038/nature11118] [Citation(s) in RCA: 944] [Impact Index Per Article: 72.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2012] [Accepted: 04/13/2012] [Indexed: 11/08/2022]
Abstract
Evidence is mounting that extinctions are altering key processes important to the productivity and sustainability of Earth's ecosystems. Further species loss will accelerate change in ecosystem processes, but it is unclear how these effects compare to the direct effects of other forms of environmental change that are both driving diversity loss and altering ecosystem function. Here we use a suite of meta-analyses of published data to show that the effects of species loss on productivity and decomposition--two processes important in all ecosystems--are of comparable magnitude to the effects of many other global environmental changes. In experiments, intermediate levels of species loss (21-40%) reduced plant production by 5-10%, comparable to previously documented effects of ultraviolet radiation and climate warming. Higher levels of extinction (41-60%) had effects rivalling those of ozone, acidification, elevated CO(2) and nutrient pollution. At intermediate levels, species loss generally had equal or greater effects on decomposition than did elevated CO(2) and nitrogen addition. The identity of species lost also had a large effect on changes in productivity and decomposition, generating a wide range of plausible outcomes for extinction. Despite the need for more studies on interactive effects of diversity loss and environmental changes, our analyses clearly show that the ecosystem consequences of local species loss are as quantitatively significant as the direct effects of several global change stressors that have mobilized major international concern and remediation efforts.
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150
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Biodiversity, Nitrogen Deposition, and CO2 Affect Grassland Soil Carbon Cycling but not Storage. Ecosystems 2012. [DOI: 10.1007/s10021-012-9532-4] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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