101
|
Barrow LN, McNew SM, Mitchell N, Galen SC, Lutz HL, Skeen H, Valqui T, Weckstein JD, Witt CC. Deeply conserved susceptibility in a multi-host, multi-parasite system. Ecol Lett 2019; 22:987-998. [PMID: 30912262 DOI: 10.1111/ele.13263] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Revised: 01/24/2019] [Accepted: 02/20/2019] [Indexed: 01/06/2023]
Abstract
Variation in susceptibility is ubiquitous in multi-host, multi-parasite assemblages, and can have profound implications for ecology and evolution in these systems. The extent to which susceptibility to parasites is phylogenetically conserved among hosts can be revealed by analysing diverse regional communities. We screened for haemosporidian parasites in 3983 birds representing 40 families and 523 species, spanning ~ 4500 m elevation in the tropical Andes. To quantify the influence of host phylogeny on infection status, we applied Bayesian phylogenetic multilevel models that included a suite of environmental, spatial, temporal, life history and ecological predictors. We found evidence of deeply conserved susceptibility across the avian tree; host phylogeny explained substantial variation in infection status, and results were robust to phylogenetic uncertainty. Our study suggests that susceptibility is governed, in part, by conserved, latent aspects of anti-parasite defence. This demonstrates the importance of deep phylogeny for understanding present-day ecological interactions.
Collapse
Affiliation(s)
- Lisa N Barrow
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, 87131, USA.,Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Sabrina M McNew
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, 87131, USA.,Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA.,Cornell Lab of Ornithology, Cornell University, Ithaca, NY, USA
| | - Nora Mitchell
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Spencer C Galen
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, 87131, USA.,Sackler Institute for Comparative Genomics & Richard Gilder Graduate School, American Museum of Natural History, New York, NY, 10024, USA.,Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, 19103, USA.,Department of Biodiversity, Earth, and Environmental Sciences, Drexel University, Philadelphia, PA, 19103, USA
| | - Holly L Lutz
- Cornell Lab of Ornithology, Cornell University, Ithaca, NY, USA.,Integrative Research Center, The Field Museum, Chicago, IL, 60605, USA.,Department of Surgery, University of Chicago, Chicago, IL, 60637, USA
| | - Heather Skeen
- Integrative Research Center, The Field Museum, Chicago, IL, 60605, USA.,Committee on Evolutionary Biology, University of Chicago, Chicago, IL, 60637, USA
| | - Thomas Valqui
- Centro de Ornitología y Biodiversidad (CORBIDI), Lima, Perú
| | - Jason D Weckstein
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, 19103, USA.,Department of Biodiversity, Earth, and Environmental Sciences, Drexel University, Philadelphia, PA, 19103, USA.,Integrative Research Center, The Field Museum, Chicago, IL, 60605, USA
| | - Christopher C Witt
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, 87131, USA.,Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| |
Collapse
|
102
|
Øverli Ø, Johansen IB. Kindness to the Final Host and Vice Versa: A Trend for Parasites Providing Easy Prey? Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00050] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
|
103
|
Ecological and Evolutionary Processes Shaping Viral Genetic Diversity. Viruses 2019; 11:v11030220. [PMID: 30841497 PMCID: PMC6466605 DOI: 10.3390/v11030220] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Revised: 02/22/2019] [Accepted: 02/27/2019] [Indexed: 02/07/2023] Open
Abstract
The contemporary genomic diversity of viruses is a result of the continuous and dynamic interaction of past ecological and evolutionary processes. Thus, genome sequences of viruses can be a valuable source of information about these processes. In this review, we first describe the relevant processes shaping viral genomic variation, with a focus on the role of host–virus coevolution and its potential to give rise to eco-evolutionary feedback loops. We further give a brief overview of available methodology designed to extract information about these processes from genomic data. Short generation times and small genomes make viruses ideal model systems to study the joint effect of complex coevolutionary and eco-evolutionary interactions on genetic evolution. This complexity, together with the diverse array of lifetime and reproductive strategies in viruses ask for extensions of existing inference methods, for example by integrating multiple information sources. Such integration can broaden the applicability of genetic inference methods and thus further improve our understanding of the role viruses play in biological communities.
Collapse
|
104
|
Abstract
Mutualisms occur when at least two species provide a net fitness benefit to each other. These types of interactions are ubiquitous in nature, with more being discovered regularly. Mutualisms are vital to humankind: Pollinators and soil microbes are critical in agriculture, bacterial microbiomes regulate our health, and domesticated animals provide us with food and companionship. Many hypotheses exist on how mutualisms evolve; however, they are difficult to evaluate without bias, due to the fragile and idiosyncratic systems most often investigated. Instead, we have created an artificial life simulation, Symbulation, which we use to examine mutualism evolution based on (1) the probability of vertical transmission (symbiont being passed to offspring) and (2) the spatial structure of the environment. We found that spatial structure can lead to less mutualism at intermediate vertical transmission rates. We provide evidence that this effect is due to the ability of quasi species to purge parasites, reducing the diversity of available symbionts. Our simulation is easily extended to test many additional hypotheses about the evolution of mutualism and serves as a general model to quantitatively compare how different environments affect the evolution of mutualism.
Collapse
|
105
|
De Meester L, Brans KI, Govaert L, Souffreau C, Mukherjee S, Vanvelk H, Korzeniowski K, Kilsdonk L, Decaestecker E, Stoks R, Urban MC. Analysing eco‐evolutionary dynamics—The challenging complexity of the real world. Funct Ecol 2019. [DOI: 10.1111/1365-2435.13261] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Luc De Meester
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
| | - Kristien I. Brans
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
| | - Lynn Govaert
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
- Department of Aquatic Ecology Eawag: Swiss Federal Institute of Aquatic Science and Technology Dübendorf Switzerland
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zürich Switzerland
| | - Caroline Souffreau
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
| | - Shinjini Mukherjee
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
| | - Héléne Vanvelk
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
| | - Konrad Korzeniowski
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
| | - Laurens Kilsdonk
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
| | - Ellen Decaestecker
- Laboratory of Aquatic Biology, IRF Life Sciences, KULAK KU Leuven Kortrijk Belgium
| | - Robby Stoks
- Laboratory or Evolutionary Stress Ecology and Ecotoxicology KU Leuven Leuven Belgium
| | - Mark C. Urban
- Department of Ecology and Evolutionary Biology, Center for Biodiversity and Ecological Risk University of Connecticut Storrs Connecticut
| |
Collapse
|
106
|
Schlüter-Vorberg L, Coors A. Impact of an immunosuppressive human pharmaceutical on the interaction of a bacterial parasite and its invertebrate host. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2019; 206:91-101. [PMID: 30468978 DOI: 10.1016/j.aquatox.2018.11.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Revised: 11/07/2018] [Accepted: 11/09/2018] [Indexed: 06/09/2023]
Abstract
The interaction of pollutants and pathogens may result in altered and often enhanced effects of the chemical, the biotic stressor or both. These interaction effects cannot be reliably predicted from the toxicity of the chemical or the virulence of the pathogen alone. While standardized detection methods for immunotoxic effects of chemicals exist with regard to human health, employing host-resistance assays with vertebrates, such standardized test systems are completely lacking for invertebrate species and no guidance is available on how immunotoxic effects of a chemical in invertebrates could be definitively identified. In the present study, we investigated the impact of the immunosuppressive pharmaceutical cyclosporine A (CsA) on the invertebrate host-pathogen system Daphnia magna - Pasteuria ramosa. CsA is a calcineurin-inhibitor in vertebrates and also known to have antibiotic as well as antifungal properties. Juvenile D. magna were exposed to CsA for 21 days with or without additional pathogen challenge during the first 72 h of exposure. Long-term survival of the host D. magna was synergistically impacted by co-exposure to the chemical and the pathogen, expressed e.g. in significantly enhanced hazard ratios. Additionally, enhanced virulence of the pathogen upon chemical co-exposure was expressed in an increased proportion of infected hosts and an increased speed of Pasteuria-induced host sterilization. In contrast, effects on reproduction were additive in Pasteuria-challenged, but finally non-infected D. magna. The enhancing effects of CsA occurred at and below 3 μg/L, which was in the absence of the pathogen the lowest concentration significantly impacting the standard toxicity endpoint 'reproduction' in D. magna. Hence, the present study provides evidence that a pharmaceutical intended to suppress the human immune system can also suppress disease resistance of an aquatic invertebrate organism at otherwise non-toxic concentrations. Plausible ways of direct interactions of CsA with the host's immune system are discussed, e.g. interference with phagocytosis or Toll-like receptors. Experimental verification of such a direct interference would be warranted to support the strong evidence for immunotoxic activity of CsA in invertebrates. While it remains open whether CsA concentrations in the environment are high enough to trigger adverse effects in environmental organisms, our findings highlight the need to consider immunotoxicity in an environmental risk assessment, and to develop suitable standardized methods for this purpose.
Collapse
Affiliation(s)
- Lisa Schlüter-Vorberg
- ECT Oekotoxikologie GmbH, Flörsheim/Main, Germany; Goethe-University Frankfurt am Main, Department Aquatic Ecotoxicology, Frankfurt am Main, Germany.
| | - Anja Coors
- ECT Oekotoxikologie GmbH, Flörsheim/Main, Germany
| |
Collapse
|
107
|
The genomic basis of Red Queen dynamics during rapid reciprocal host-pathogen coevolution. Proc Natl Acad Sci U S A 2018; 116:923-928. [PMID: 30598446 PMCID: PMC6338873 DOI: 10.1073/pnas.1810402116] [Citation(s) in RCA: 81] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Pathogens are omnipresent and by definition detrimental to their hosts. Pathogens thus exert high selection on their hosts, which, if adapting, can exert similar levels of selection on the pathogen, resulting in ongoing cycles of reciprocal adaptation between the antagonists. Such coevolutionary interactions have a central influence on the evolution of organisms. Surprisingly, we still know little about the exact selection dynamics and the genome regions involved. Our study uses a controlled experimental approach with an animal host to dissect coevolutionary selection. We find that distinct selective processes underlie rapid coadaptation in the two antagonists, including antagonistic frequency-dependent selection on toxin gene copy number in the pathogen, while the host response is likely influenced by changes in multiple genome regions. Red Queen dynamics, involving coevolutionary interactions between species, are ubiquitous, shaping the evolution of diverse biological systems. To date, information on the underlying selection dynamics and the involved genome regions is mainly available for bacteria–phage systems or only one of the antagonists of a eukaryotic host–pathogen interaction. We add to our understanding of these important coevolutionary interactions using an experimental host–pathogen model, which includes the nematode Caenorhabditis elegans and its pathogen Bacillus thuringiensis. We combined experimental evolution with time-shift experiments, in which a focal host or pathogen is tested against a coevolved antagonist from the past, present, or future, followed by genomic analysis. We show that (i) coevolution occurs rapidly within few generations, (ii) temporal coadaptation at the phenotypic level is found in parallel across replicate populations, consistent with antagonistic frequency-dependent selection, (iii) genomic changes in the pathogen match the phenotypic pattern and include copy number variations of a toxin-encoding plasmid, and (iv) host genomic changes do not match the phenotypic pattern and likely involve selective responses at more than one locus. By exploring the dynamics of coevolution at the phenotypic and genomic level for both host and pathogen simultaneously, our findings demonstrate a more complex model of the Red Queen, consisting of distinct selective processes acting on the two antagonists during rapid and reciprocal coadaptation.
Collapse
|
108
|
Montero-Pau J, Gómez A, Serra M. Founder effects drive the genetic structure of passively dispersed aquatic invertebrates. PeerJ 2018; 6:e6094. [PMID: 30581680 PMCID: PMC6294052 DOI: 10.7717/peerj.6094] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Accepted: 11/10/2018] [Indexed: 11/25/2022] Open
Abstract
Populations of passively dispersed organisms in continental aquatic habitats typically show high levels of neutral genetic differentiation despite their high dispersal capabilities. Several evolutionary factors, including founder events, local adaptation, and life cycle features such as high population growth rates and the presence of propagule banks, have been proposed to be responsible for this paradox. Here, we have modeled the colonization process to assess the impact of migration rate, population growth rate, population size, local adaptation and life-cycle features on the population genetic structure in these organisms. Our simulations show that the strongest effect on population structure are persistent founder effects, resulting from the interaction of a few population founders, high population growth rates, large population sizes and the presence of diapausing egg banks. In contrast, the role of local adaptation, genetic hitchhiking and migration is limited to small populations in these organisms. Our results indicate that local adaptation could have different impact on genetic structure in different groups of zooplankters.
Collapse
Affiliation(s)
- Javier Montero-Pau
- Department of Biochemistry and Molecular Biology, Universidad de Valencia, Valencia, Spain.,Department of Biological Sciences, University of Hull, Hull, United Kingdom
| | - Africa Gómez
- Department of Biological Sciences, University of Hull, Hull, United Kingdom
| | - Manuel Serra
- Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universidad de Valencia, Valencia, Spain
| |
Collapse
|
109
|
O’Brien AM, Sawers RJH, Ross-Ibarra J, Strauss SY. Evolutionary Responses to Conditionality in Species Interactions across Environmental Gradients. Am Nat 2018; 192:715-730. [DOI: 10.1086/700118] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
110
|
Cassin-Sackett L, Callicrate TE, Fleischer RC. Parallel evolution of gene classes, but not genes: Evidence from Hawai'ian honeycreeper populations exposed to avian malaria. Mol Ecol 2018; 28:568-583. [PMID: 30298567 DOI: 10.1111/mec.14891] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Revised: 10/14/2018] [Accepted: 10/19/2018] [Indexed: 12/29/2022]
Abstract
Adaptation in nature is ubiquitous, yet characterizing its genomic basis is difficult because population demographics cause correlations with nonadaptive loci. Introduction events provide opportunities to observe adaptation over known spatial and temporal scales, facilitating the identification of genes involved in adaptation. The pathogen causing avian malaria, Plasmodium relictum, was introduced to Hawai'i in the 1930s and elicited extinctions and precipitous population declines in native honeycreepers. After a sharp initial population decline, the Hawai'i 'amakihi (Chlorodrepanis virens) has evolved tolerance to the parasite at low elevations where P. relictum exists, and can sustain infection without major fitness consequences. High-elevation, unexposed populations of 'amakihi display little to no tolerance. To explore the genomic basis of adaptation to P. relictum in low-elevation 'amakihi, we genotyped 125 'amakihi from the island of Hawai'i via hybridization capture to 40,000 oligonucleotide baits containing SNPs and used the reference 'amakihi genome to identify genes potentially under selection from malaria. We tested for outlier loci between low- and high-elevation population pairs and identified loci with signatures of selection within low-elevation populations. In some cases, genes commonly involved in the immune response (e.g., major histocompatibility complex) were associated with malaria presence in the population. We also detected several novel candidate loci that may be implicated in surviving malaria infection (e.g., beta-defensin, glycoproteins and interleukin-related genes). Our results suggest that rapid adaptation to pathogens may occur through changes in different immune genes, but in the same classes of genes, across populations.
Collapse
Affiliation(s)
- Loren Cassin-Sackett
- Center for Conservation Genomics, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, District of Columbia.,Department of Integrative Biology, University of South Florida, Tampa, Florida
| | - Taylor E Callicrate
- Center for Conservation Genomics, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, District of Columbia.,Species Conservation Toolkit Initiative, Department of Conservation Science, Chicago Zoological Society, Brookfield, Illinois
| | - Robert C Fleischer
- Center for Conservation Genomics, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, District of Columbia
| |
Collapse
|
111
|
Hendry AP, Schoen DJ, Wolak ME, Reid JM. The Contemporary Evolution of Fitness. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2018. [DOI: 10.1146/annurev-ecolsys-110617-062358] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The rate of evolution of population mean fitness informs how selection acting in contemporary populations can counteract environmental change and genetic degradation (mutation, gene flow, drift, recombination). This rate influences population increases (e.g., range expansion), population stability (e.g., cryptic eco-evolutionary dynamics), and population recovery (i.e., evolutionary rescue). We review approaches for estimating such rates, especially in wild populations. We then review empirical estimates derived from two approaches: mutation accumulation (MA) and additive genetic variance in fitness (IAw). MA studies inform how selection counters genetic degradation arising from deleterious mutations, typically generating estimates of <1% per generation. IAw studies provide an integrated prediction of proportional change per generation, nearly always generating estimates of <20% and, more typically, <10%. Overall, considerable, but not unlimited, evolutionary potential exists in populations facing detrimental environmental or genetic change. However, further studies with diverse methods and species are required for more robust and general insights.
Collapse
Affiliation(s)
- Andrew P. Hendry
- Redpath Museum, McGill University, Montréal, Québec H3A 0C4, Canada
- Department of Biology, McGill University, Montréal, Québec H3A 1B1, Canada
| | - Daniel J. Schoen
- Department of Biology, McGill University, Montréal, Québec H3A 1B1, Canada
| | - Matthew E. Wolak
- Department of Biological Sciences, Auburn University, Auburn, Alabama 36849, USA
- School of Biological Sciences, University of Aberdeen, Aberdeen AB24 2TZ, United Kingdom
| | - Jane M. Reid
- School of Biological Sciences, University of Aberdeen, Aberdeen AB24 2TZ, United Kingdom
| |
Collapse
|
112
|
Abstract
Evolutionary conflict occurs when two parties can each affect a joint phenotype, but they gain from pushing it in opposite directions. Conflicts occur across many biological levels and domains but share many features. They are a major source of biological maladaptation. They affect biological diversity, often increasing it, at almost every level. Because opponents create selection that can be strong, persistent, and malevolent, conflict often leads to accelerated evolution and arms races. Conflicts might even drive the majority of adaptation, with pathogens leading the way as selective forces. The evolution of conflicts is complex, with outcomes determined partly by the relative evolvability of each party and partly by the kinds of power that each evolves. Power is a central issue in biology. In addition to physical strength and weapons, it includes strength from numbers and complexity; abilities to bind and block; advantageous timing; and abilities to acquire, use, and distort information.
Collapse
Affiliation(s)
- David C. Queller
- Department of Biology, Washington University in St. Louis, St. Louis, Missouri 63130, USA;,
| | - Joan E. Strassmann
- Department of Biology, Washington University in St. Louis, St. Louis, Missouri 63130, USA;,
| |
Collapse
|
113
|
Bolnick DI, Barrett RD, Oke KB, Rennison DJ, Stuart YE. (Non)Parallel Evolution. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2018. [DOI: 10.1146/annurev-ecolsys-110617-062240] [Citation(s) in RCA: 155] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Parallel evolution across replicate populations has provided evolutionary biologists with iconic examples of adaptation. When multiple populations colonize seemingly similar habitats, they may evolve similar genes, traits, or functions. Yet, replicated evolution in nature or in the laboratory often yields inconsistent outcomes: Some replicate populations evolve along highly similar trajectories, whereas other replicate populations evolve to different extents or in distinct directions. To understand these heterogeneous outcomes, biologists are increasingly treating parallel evolution not as a binary phenomenon but rather as a quantitative continuum ranging from parallel to nonparallel. By measuring replicate populations’ positions along this (non)parallel continuum, we can test hypotheses about evolutionary and ecological factors that influence the extent of repeatable evolution. We review evidence regarding the manifestation of (non)parallel evolution in the laboratory, in natural populations, and in applied contexts such as cancer. We enumerate the many genetic, ecological, and evolutionary processes that contribute to variation in the extent of parallel evolution.
Collapse
Affiliation(s)
- Daniel I. Bolnick
- Department of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
- Current affiliation: Department of Ecology and Evolution, University of Connecticut, Storrs, Connecticut 06268, USA
| | | | - Krista B. Oke
- Redpath Museum, McGill University, Montreal, Quebec H3A 2K6, Canada
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California 95060, USA
| | - Diana J. Rennison
- Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland
| | - Yoel E. Stuart
- Department of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
| |
Collapse
|
114
|
Abstract
Although the idea of coevolution was first presented 150 years ago, we still only vaguely understand the genetic basis of its workings. Identifying the genes responsible for coevolutionary interactions would enable us to distinguish between fundamentally different models of coevolution and would represent a milestone in population genetics and genomics.
Collapse
Affiliation(s)
- Dieter Ebert
- Department of Environmental Sciences, University of Basel, Zoology, Vesalgasse 1, 4051, Basel, Switzerland.
| |
Collapse
|
115
|
Reyserhove L, Samaey G, Muylaert K, Coppé V, Van Colen W, Decaestecker E. A historical perspective of nutrient change impact on an infectious disease in Daphnia. Ecology 2018; 98:2784-2798. [PMID: 28845593 DOI: 10.1002/ecy.1994] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Revised: 06/18/2017] [Accepted: 07/10/2017] [Indexed: 01/01/2023]
Abstract
Changes in food quality can play a substantial role in the vulnerability of hosts to infectious diseases. In this study, we focused on the genetic differentiation of the water flea Daphnia magna towards food of different quality (by manipulating C:N:P ratios) and its impact on the interaction with a virulent infectious disease, "White Fat Cell Disease (WFCD)". Via a resurrection ecology approach, we isolated two Daphnia subpopulations from different depths in a sediment core, which were exposed to parasites and a nutrient ratio gradient in a common garden experiment. Our results showed a genetic basis for sensitivity towards food deprivation. Both fecundity and host survival was differently affected when fed with low-quality food. This strongly impacted the way both subpopulations interacted with this parasite. A historical reconstruction of nutrient changes in a sediment core reflected an increase in organic material and phosphorus concentration (more eutrophic conditions) over time in the studied pond. These results enable us to relate patterns of genetic differentiation in sensitivity towards food deprivation to an increasing level of eutrophication of the subpopulations, which ultimately impacts parasite virulence effects. This finding was confirmed via a dynamic energy budgets (DEB), in which energy was partitioned for the host and the parasite. The model was tailored to our study by integrating (1) increased growth and a fecundity shift in the host upon parasitism and (2) differences of food assimilation in the subpopulations showing that a reduced nutrient assimilation resulted in increased parasite virulence. The combination of our experiment with the DEB model shows that it is important to consider genetic diversity when studying the impact of nutritional stress on species interactions, especially in the context of changing environments and emerging infectious diseases.
Collapse
Affiliation(s)
- Lien Reyserhove
- KU Leuven, Interdisciplinary Research Facility Life Sciences, KULAK, Campus Kortrijk, Etienne Sabbelaan 53, Kortrijk, B-8500, Belgium
| | - Giovanni Samaey
- Department of Computer Science, KU Leuven, Celestijnenlaan 200A, Leuven, B-3001, Belgium
| | - Koenraad Muylaert
- KU Leuven, Interdisciplinary Research Facility Life Sciences, KULAK, Campus Kortrijk, Etienne Sabbelaan 53, Kortrijk, B-8500, Belgium
| | - Vincent Coppé
- Department of Computer Science, KU Leuven, Celestijnenlaan 200A, Leuven, B-3001, Belgium
| | - Willem Van Colen
- KU Leuven, Interdisciplinary Research Facility Life Sciences, KULAK, Campus Kortrijk, Etienne Sabbelaan 53, Kortrijk, B-8500, Belgium
| | - Ellen Decaestecker
- KU Leuven, Interdisciplinary Research Facility Life Sciences, KULAK, Campus Kortrijk, Etienne Sabbelaan 53, Kortrijk, B-8500, Belgium
| |
Collapse
|
116
|
Cuenca Cambronero M, Beasley J, Kissane S, Orsini L. Evolution of thermal tolerance in multifarious environments. Mol Ecol 2018; 27:4529-4541. [DOI: 10.1111/mec.14890] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Revised: 09/18/2018] [Accepted: 09/19/2018] [Indexed: 12/14/2022]
Affiliation(s)
- Maria Cuenca Cambronero
- Environmental Genomics Group; School of Biosciences; The University of Birmingham; Birmingham UK
| | - Jordan Beasley
- Environmental Genomics Group; School of Biosciences; The University of Birmingham; Birmingham UK
- Department of Genetics; University of Leicester; Leicester UK
| | - Stephen Kissane
- Environmental Genomics Group; School of Biosciences; The University of Birmingham; Birmingham UK
| | - Luisa Orsini
- Environmental Genomics Group; School of Biosciences; The University of Birmingham; Birmingham UK
| |
Collapse
|
117
|
van der Kooi CJ, Ghali K, Amptmeijer D, Schwander T. Niche differentiation among clones in asexual grass thrips. J Evol Biol 2018; 32:126-130. [PMID: 30339293 PMCID: PMC7379302 DOI: 10.1111/jeb.13393] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Revised: 10/10/2018] [Accepted: 10/13/2018] [Indexed: 01/16/2023]
Abstract
Many asexual animal populations comprise a mixture of genetically different lineages, but to what degree this genetic diversity leads to ecological differences remains often unknown. Here, we test whether genetically different clonal lineages of Aptinothrips grass thrips differ in performance on a range of plants used as hosts in natural populations. We find a clear clone‐by‐plant species interactive effect on reproductive output, meaning that clonal lineages perform differently on different plant species and thus are characterized by disparate ecological niches. This implies that local clonal diversities can be driven and maintained by frequency‐dependent selection and that resource heterogeneity can generate diverse clone assemblies.
Collapse
Affiliation(s)
| | - Karim Ghali
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| | - David Amptmeijer
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| | - Tanja Schwander
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| |
Collapse
|
118
|
Im JH, Lazzaro BP. Population genetic analysis of autophagy and phagocytosis genes in Drosophila melanogaster and D. simulans. PLoS One 2018; 13:e0205024. [PMID: 30281656 PMCID: PMC6169979 DOI: 10.1371/journal.pone.0205024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Accepted: 09/18/2018] [Indexed: 12/03/2022] Open
Abstract
Autophagy and phagocytosis are cellular immune mechanisms for internalization and elimination of intracellular and extracellular pathogens. Some pathogens have evolved the ability to inhibit or manipulate these processes, raising the prospect of adaptive reciprocal co-evolution by the host. We performed population genetic analyses on phagocytosis and autophagy genes in Drosophila melanogaster and D. simulans to test for molecular evolutionary signatures of immune adaptation. We found that phagocytosis and autophagy genes as a whole exhibited an elevated level of haplotype homozygosity in both species. In addition, we detected signatures of recent selection, notably in the Atg14 and Ykt6 genes in D. melanogaster and a pattern of elevated sequence divergence in the genderblind (gb) gene on the D. simulans lineage. These results suggest that the evolution of the host cellular immune system as a whole may be shaped by a dynamic conflict between Drosophila and its pathogens even without pervasive evidence of strong adaptive evolution at the individual gene level.
Collapse
Affiliation(s)
- Joo Hyun Im
- Cornell Institute of Host-Microbe Interactions and Disease, Cornell University, Ithaca, NY, United States of America.,Graduate Field of Genetics, Genomics, and Development, Cornell University, Ithaca, NY, United States of America.,Department of Entomology, Cornell University, Ithaca, NY, United States of America
| | - Brian P Lazzaro
- Cornell Institute of Host-Microbe Interactions and Disease, Cornell University, Ithaca, NY, United States of America.,Graduate Field of Genetics, Genomics, and Development, Cornell University, Ithaca, NY, United States of America.,Department of Entomology, Cornell University, Ithaca, NY, United States of America
| |
Collapse
|
119
|
Rapid Antagonistic Coevolution in an Emerging Pathogen and Its Vertebrate Host. Curr Biol 2018; 28:2978-2983.e5. [PMID: 30197084 DOI: 10.1016/j.cub.2018.07.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Revised: 04/24/2018] [Accepted: 07/02/2018] [Indexed: 02/02/2023]
Abstract
Host-pathogen coevolution is assumed to play a key role in eco-evolutionary processes, including epidemiological dynamics and the evolution of sexual reproduction [1-4]. Despite this, direct evidence for host-pathogen coevolution is exceptional [5-7], particularly in vertebrate hosts. Indeed, although vertebrate hosts have been shown to evolve in response to pathogens or vice versa [8-12], there is little evidence for the necessary reciprocal changes in the success of both antagonists over time [13]. Here, we generate a time-shift experiment to demonstrate adaptive, reciprocal changes in North American house finches (Haemorhous mexicanus) and their emerging bacterial pathogen, Mycoplasma gallisepticum [14-16]. Our experimental design is made possible by the existence of disease-exposed and unexposed finch populations, which were known to exhibit equivalent responses to experimental inoculation until the recent spread of genetic resistance in the former [14, 17]. Whereas inoculations with pathogen isolates from epidemic outbreak caused comparable sub-lethal eye swelling in hosts from exposed (hereafter adapted) and unexposed (hereafter ancestral) populations, inoculations with isolates sampled after the spread of resistance were threefold more likely to cause lethal symptoms in hosts from ancestral populations. Similarly, the probability that pathogens successfully established an infection in the primary host and, before inducing death, transmitted to an uninfected sentinel was highest when recent isolates were inoculated in hosts from ancestral populations and lowest when early isolates were inoculated in hosts from adapted populations. Our results demonstrate antagonistic host-pathogen coevolution, with hosts and pathogens displaying increased resistance and virulence in response to each other over time.
Collapse
|
120
|
Lu GA, Zhao Y, Yang H, Lan A, Shi S, Liufu Z, Huang Y, Tang T, Xu J, Shen X, Wu CI. Death of new microRNA genes in Drosophila via gradual loss of fitness advantages. Genome Res 2018; 28:1309-1318. [PMID: 30049791 PMCID: PMC6120634 DOI: 10.1101/gr.233809.117] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 07/20/2018] [Indexed: 01/23/2023]
Abstract
The prevalence of de novo coding genes is controversial due to length and coding constraints. Noncoding genes, especially small ones, are freer to evolve de novo by comparison. The best examples are microRNAs (miRNAs), a large class of regulatory molecules ∼22 nt in length. Here, we study six de novo miRNAs in Drosophila, which, like most new genes, are testis-specific. We ask how and why de novo genes die because gene death must be sufficiently frequent to balance the many new births. By knocking out each miRNA gene, we analyzed their contributions to the nine components of male fitness (sperm production, length, and competitiveness, among others). To our surprise, the knockout mutants often perform better than the wild type in some components, and slightly worse in others. When two of the younger miRNAs are assayed in long-term laboratory populations, their total fitness contributions are found to be essentially zero. These results collectively suggest that adaptive de novo genes die regularly, not due to the loss of functionality, but due to the canceling out of positive and negative fitness effects, which may be characterized as "quasi-neutrality." Since de novo genes often emerge adaptively and become lost later, they reveal ongoing period-specific adaptations, reminiscent of the "Red-Queen" metaphor for long-term evolution.
Collapse
Affiliation(s)
- Guang-An Lu
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Yixin Zhao
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Hao Yang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Ao Lan
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Suhua Shi
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Zhongqi Liufu
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Yumei Huang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Tian Tang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Jin Xu
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
- Center for Personal Dynamic Regulomes, Stanford University, Stanford, California 94305, USA
| | - Xu Shen
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
| | - Chung-I Wu
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, Guangdong, China
- Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA
| |
Collapse
|
121
|
Anzia EL, Rabajante JF. Antibiotic-driven escape of host in a parasite-induced Red Queen dynamics. ROYAL SOCIETY OPEN SCIENCE 2018; 5:180693. [PMID: 30839730 PMCID: PMC6170573 DOI: 10.1098/rsos.180693] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Accepted: 08/14/2018] [Indexed: 06/09/2023]
Abstract
Winnerless coevolution of hosts and parasites could exhibit Red Queen dynamics, which is characterized by parasite-driven cyclic switching of expressed host phenotypes. We hypothesize that the application of antibiotics to suppress the reproduction of parasites can provide an opportunity for the hosts to escape such winnerless coevolution. Here, we formulate a minimal mathematical model of host-parasite interaction involving multiple host phenotypes that are targeted by adapting parasites. Our model predicts the levels of antibiotic effectiveness that can steer the parasite-driven cyclic switching of host phenotypes (oscillations) to a stable equilibrium of host survival. Our simulations show that uninterrupted application of antibiotic with high-level effectiveness (greater than 85%) is needed to escape the Red Queen dynamics. Interrupted and low level of antibiotic effectiveness are indeed useless to stop host-parasite coevolution. This study can be a guide in designing good practices and protocols to minimize the risk of further progression of parasitic infections.
Collapse
Affiliation(s)
| | - Jomar F. Rabajante
- Institute of Mathematical Sciences and Physics, University of the Philippines Los Baños, Laguna, Philippines
| |
Collapse
|
122
|
van Niekerk G, Engelbrecht AM. Inflammation-induced metabolic derangements or adaptation: An immunometabolic perspective. Cytokine Growth Factor Rev 2018; 43:47-53. [PMID: 29970338 DOI: 10.1016/j.cytogfr.2018.06.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 06/27/2018] [Accepted: 06/27/2018] [Indexed: 02/08/2023]
Abstract
Inflammatory mediators have a well-established role in mediating metabolic disturbances. Chronic low-grade inflammation is implicated in the pathogenesis of obesity and the development of metabolic syndrome. This phenomenon is even more pronounced in severe inflammatory states such as in critically ill patients where hyperglycaemia invariably manifests. Similarly, though inflammatory mediators have a well-established role in promoting bone resorption, the adaptive function of this process remains unknown. Here we review emerging evidence from the field of immunometabolism suggesting that these two processes serve a common goal, namely, to sustain the rapid proliferation of immune cells during an infection. Activated immune cells exhibit an increased demand for glucose which not only provides energy, but also glycolytic intermediates which are fluxed into biosynthetic processes. Similarly, phosphate liberated from bone is consumed during the phosphorylation of glycolytic intermediates, which plays a critical role in the synthesis of nucleotides and phospholipids. Taken together, these considerations suggest that metabolic alterations induced by inflammatory mediators do not manifest as an inability to maintain homeostatic levels of metabolites but represent an adaptive shift in the homeostatic set point during an infection.
Collapse
Affiliation(s)
- Gustav van Niekerk
- Department of Physiological Sciences, Stellenbosch University, Stellenbosch, South Africa.
| | - Anna-Mart Engelbrecht
- Department of Physiological Sciences, Stellenbosch University, Stellenbosch, South Africa
| |
Collapse
|
123
|
Sison-Mangus MP, Metzger CMJA, Ebert D. Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen. Sci Rep 2018; 8:9407. [PMID: 29925845 PMCID: PMC6010447 DOI: 10.1038/s41598-018-27681-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Accepted: 06/05/2018] [Indexed: 01/09/2023] Open
Abstract
Host-associated microbiota have been claimed to play a role in hosts' responses to parasitic infections, often protecting the hosts from infection. We tested for such a role in the crustacean Daphnia and the parasitic bacterium Pasteuria ramosa, a widely used model system for host-parasite interactions. We first determined the infection phenotype (i.e., resistotype) of eight clonal D. magna genotypes against four strains of P. ramosa by attachment test, followed by 16 S rDNA amplicon sequencing to determine if their genotype or their parasite resistotype influences the composition of their microbiome. We then reciprocally transplanted the microbiota of two host genotypes with opposite resistotypes to four P. ramosa isolates, followed by a reassessment of their resistotype after transplantation. We found significant differences in microbiome composition and structure between Daphnia genotypes and between Daphnia resistotypes to specific P. ramosa strains. Reciprocal microbiota exchange or making the Daphnia hosts bacteria-free, however, did not influence the resistotypes of the hosts. Thus, in contrary to what has been observed in some taxa, our results suggest that D. magna susceptibility to P. ramosa is strongly dictated by the genetic differences of the hosts and is still dependent on Daphnia's first line of immune defense against the esophageal attachment of P. ramosa, which appears to be uninfluenced by the host's microbiota.
Collapse
Affiliation(s)
- Marilou P Sison-Mangus
- Department of Ocean Sciences, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA, 95064, USA.
- Department of Environmental Sciences, Zoology, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland.
| | - César M J A Metzger
- Department of Environmental Sciences, Zoology, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland
- Spiez Laboratory, Austrasse, 3700, Spiez, Switzerland
| | - Dieter Ebert
- Department of Environmental Sciences, Zoology, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland
| |
Collapse
|
124
|
Best A, Ashby B, White A, Bowers R, Buckling A, Koskella B, Boots M. Host-parasite fluctuating selection in the absence of specificity. Proc Biol Sci 2018; 284:rspb.2017.1615. [PMID: 29093222 PMCID: PMC5698645 DOI: 10.1098/rspb.2017.1615] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 10/02/2017] [Indexed: 12/21/2022] Open
Abstract
Fluctuating selection driven by coevolution between hosts and parasites is important for the generation of host and parasite diversity across space and time. Theory has focused primarily on infection genetics, with highly specific ‘matching-allele’ frameworks more likely to generate fluctuating selection dynamics (FSD) than ‘gene-for-gene’ (generalist–specialist) frameworks. However, the environment, ecological feedbacks and life-history characteristics may all play a role in determining when FSD occurs. Here, we develop eco-evolutionary models with explicit ecological dynamics to explore the ecological, epidemiological and host life-history drivers of FSD. Our key result is to demonstrate for the first time, to our knowledge, that specificity between hosts and parasites is not required to generate FSD. Furthermore, highly specific host–parasite interactions produce unstable, less robust stochastic fluctuations in contrast to interactions that lack specificity altogether or those that vary from generalist to specialist, which produce predictable limit cycles. Given the ubiquity of ecological feedbacks and the variation in the nature of specificity in host–parasite interactions, our work emphasizes the underestimated potential for host–parasite coevolution to generate fluctuating selection.
Collapse
Affiliation(s)
- Alex Best
- School of Mathematics and Statistics, University of Sheffield, Sheffield S3 7RH, UK
| | - Ben Ashby
- Department of Mathematical Sciences, University of Bath, Claverton Down, Bath BA2 7AY, UK.,Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
| | - Andy White
- Department of Mathematics and the Maxwell Institute for Mathematical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, UK
| | - Roger Bowers
- Department of Mathematical Sciences, Division of Applied Mathematics, The University of Liverpool, Mathematical Sciences Building, Liverpool L69 7ZL, UK
| | - Angus Buckling
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Treliever Road, Penryn, Cornwall TR10 9EZ, UK
| | - Britt Koskella
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
| | - Mike Boots
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA.,Biosciences, College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Treliever Road, Penryn, Cornwall TR10 9EZ, UK
| |
Collapse
|
125
|
Betts A, Gray C, Zelek M, MacLean RC, King KC. High parasite diversity accelerates host adaptation and diversification. Science 2018; 360:907-911. [PMID: 29798882 PMCID: PMC7612933 DOI: 10.1126/science.aam9974] [Citation(s) in RCA: 86] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Revised: 02/18/2018] [Accepted: 04/16/2018] [Indexed: 09/23/2023]
Abstract
Host-parasite species pairs are known to coevolve, but how multiple parasites coevolve with their host is unclear. By using experimental coevolution of a host bacterium and its viral parasites, we revealed that diverse parasite communities accelerated host evolution and altered coevolutionary dynamics to enhance host resistance and decrease parasite infectivity. Increases in parasite diversity drove shifts in the mode of selection from fluctuating (Red Queen) dynamics to predominately directional (arms race) dynamics. Arms race dynamics were characterized by selective sweeps of generalist resistance mutations in the genes for the host bacterium's cell surface lipopolysaccharide (a bacteriophage receptor), which caused faster molecular evolution within host populations and greater genetic divergence among populations. These results indicate that exposure to multiple parasites influences the rate and type of host-parasite coevolution.
Collapse
Affiliation(s)
- A Betts
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.
| | - C Gray
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot SL5 7PY, UK
| | - M Zelek
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - R C MacLean
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - K C King
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.
| |
Collapse
|
126
|
Houdek P. Economic Holobiont: Influence of Parasites, Microbiota and Chemosignals on Economic Behavior. Front Behav Neurosci 2018; 12:77. [PMID: 29765310 PMCID: PMC5938411 DOI: 10.3389/fnbeh.2018.00077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Accepted: 04/09/2018] [Indexed: 11/29/2022] Open
Abstract
The article is a perspective on utilization of microorganisms and chemosignals in studying human economic behavior. Research in biological roots of economic development has already confirmed that parasitic pressure influenced the creation and development of cultural norms and institutions. However, other effects of microorganisms on human groups and individual decision-making and behavior are heavily understudied. The perspective discusses how parasitic infections, sexually transmitted organisms and microbiota (i.e., “human holobiont”) could causally influence risk-seeking behavior, impulsivity, social dominance, empathy, political views and gender differences. As a case study, the parasite Toxoplasma gondii and its influence on economic preferences, personal characteristics and human appearance are examined. I also briefly review how chemosignals influence decision-making, particularly in the social preferences domain. I mention some predictions that arise from the paradigm of economic holobiont for the economic science. The conclusion summarizes limitations of the discussed findings and the stated speculations.
Collapse
Affiliation(s)
- Petr Houdek
- Faculty of Social and Economic Studies, Jan Evangelista Purkyně University in Ústí nad Labem, Ústí nad Labem, Czechia
| |
Collapse
|
127
|
Woestmann L, Gibbs M, Hesketh H, Saastamoinen M. Viral exposure effects on life-history, flight-related traits, and wing melanisation in the Glanville fritillary butterfly. JOURNAL OF INSECT PHYSIOLOGY 2018; 107:136-143. [PMID: 29627352 PMCID: PMC5971209 DOI: 10.1016/j.jinsphys.2018.03.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Revised: 03/23/2018] [Accepted: 03/26/2018] [Indexed: 06/08/2023]
Abstract
Infections represent a constant threat for organisms and can lead to substantial fitness losses. Understanding how individuals, especially from natural populations, respond towards infections is thus of great importance. Little is known about immunity in the Glanville fritillary butterfly (Melitaea cinxia). As the larvae live gregariously in family groups, vertical and horizontal transmission of infections could have tremendous effects on individuals and consequently impact population dynamics in nature. We used the Alphabaculovirus type strain Autographa californica multiple nucleopolyhedrovirus (AcMNPV) and demonstrated that positive concentration-dependent baculovirus exposure leads to prolonged developmental time and decreased survival during larval and pupal development, with no sex specific differences. Viral exposure did not influence relative thorax mass or wing morphometric traits often related to flight ability, yet melanisation of the wings increased with viral exposure, potentially influencing disease resistance or flight capacity via thermal regulation. Further research is needed to explore effects under sub-optimal conditions, determine effects on fitness-related traits, and investigate a potential adaptive response of increased melanisation in the wings due to baculovirus exposure.
Collapse
Affiliation(s)
- Luisa Woestmann
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, PO Box 65, Viikinkaari 1, 00014 University of Helsinki, Finland.
| | - Melanie Gibbs
- NERC Centre for Ecology & Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire OX10 8BB, United Kingdom.
| | - Helen Hesketh
- NERC Centre for Ecology & Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire OX10 8BB, United Kingdom.
| | - Marjo Saastamoinen
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, PO Box 65, Viikinkaari 1, 00014 University of Helsinki, Finland.
| |
Collapse
|
128
|
Vorburger C, Perlman SJ. The role of defensive symbionts in host-parasite coevolution. Biol Rev Camb Philos Soc 2018; 93:1747-1764. [PMID: 29663622 DOI: 10.1111/brv.12417] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 03/20/2018] [Accepted: 03/23/2018] [Indexed: 02/06/2023]
Abstract
Understanding the coevolution of hosts and parasites is a long-standing goal of evolutionary biology. There is a well-developed theoretical framework to describe the evolution of host-parasite interactions under the assumption of direct, two-species interactions, which can result in arms race dynamics or sustained genotype fluctuations driven by negative frequency dependence (Red Queen dynamics). However, many hosts rely on symbionts for defence against parasites. Whilst the ubiquity of defensive symbionts and their potential importance for disease control are increasingly recognized, there is still a gap in our understanding of how symbionts mediate or possibly take part in host-parasite coevolution. Herein we address this question by synthesizing information already available from theoretical and empirical studies. First, we briefly introduce current hypotheses on how defensive mutualisms evolved from more parasitic relationships and highlight exciting new experimental evidence showing that this can occur very rapidly. We go on to show that defensive symbionts influence virtually all important determinants of coevolutionary dynamics, namely the variation in host resistance available to selection by parasites, the specificity of host resistance, and the trade-off structure between host resistance and other components of fitness. In light of these findings, we turn to the limited theory and experiments available for such three-species interactions to assess the role of defensive symbionts in host-parasite coevolution. Specifically, we discuss under which conditions the defensive symbiont may take over from the host the reciprocal adaptation with parasites and undergo its own selection dynamics, thereby altering or relaxing selection on the hosts' own immune defences. Finally, we address potential effects of defensive symbionts on the evolution of parasite virulence. This is an important problem for which there is no single, clear-cut prediction. The selection on parasite virulence resulting from the presence of defensive symbionts in their hosts will depend on the underlying mechanism of defence. We identify the evolutionary predictions for different functional categories of symbiont-conferred resistance and we evaluate the empirical literature for supporting evidence. We end this review with outstanding questions and promising avenues for future research to improve our understanding of symbiont-mediated coevolution between hosts and parasites.
Collapse
Affiliation(s)
- Christoph Vorburger
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600, Dübendorf, Switzerland.,Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zürich, Universitätsstrasse 16, 8092, Zürich, Switzerland
| | - Steve J Perlman
- Department of Biology, University of Victoria, 3800 Finnerty Road, Victoria, BC, V8P 5C2, Canada
| |
Collapse
|
129
|
Höckerstedt LM, Siren JP, Laine AL. Effect of spatial connectivity on host resistance in a highly fragmented natural pathosystem. J Evol Biol 2018; 31:844-852. [PMID: 29569292 PMCID: PMC6032904 DOI: 10.1111/jeb.13268] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Revised: 03/12/2018] [Accepted: 03/15/2018] [Indexed: 02/06/2023]
Abstract
Both theory and experimental evolution studies predict migration to influence the outcome of antagonistic coevolution between hosts and their parasites, with higher migration rates leading to increased diversity and evolutionary potential. Migration rates are expected to vary in spatially structured natural pathosystems, yet how spatial structure generates variation in coevolutionary trajectories across populations occupying the same landscape has not been tested. Here, we studied the effect of spatial connectivity on host evolutionary potential in a natural pathosystem characterized by a stable Plantago lanceolata host network and a highly dynamic Podosphaera plantaginis parasite metapopulation. We designed a large inoculation experiment to test resistance of five isolated and five well‐connected host populations against sympatric and allopatric pathogen strains, over 4 years. Contrary to our expectations, we did not find consistently higher resistance against sympatric pathogen strains in the well‐connected populations. Instead, host local adaptation varied considerably among populations and through time with greater fluctuations observed in the well‐connected populations. Jointly, our results suggest that in populations where pathogens have successfully established, they have the upper hand in the coevolutionary arms race, but hosts may be better able to respond to pathogen‐imposed selection in the well‐connected than in the isolated populations. Hence, the ongoing and extensive fragmentation of natural habitats may increase vulnerability to diseases.
Collapse
Affiliation(s)
| | - Jukka Pekka Siren
- Department of Computer Science, School of Sciences, Aalto University, Espoo, Finland
| | - Anna-Liisa Laine
- Faculty of Environmental and Biological Sciences, University of Helsinki, Helsinki, Finland
| |
Collapse
|
130
|
Andras JP, Fields PD, Ebert D. Spatial population genetic structure of a bacterial parasite in close coevolution with its host. Mol Ecol 2018; 27:1371-1384. [DOI: 10.1111/mec.14545] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2017] [Revised: 02/26/2018] [Accepted: 02/27/2018] [Indexed: 02/06/2023]
Affiliation(s)
- Jason P. Andras
- Department of Biological Sciences; Clapp Laboratory; Mount Holyoke College; South Hadley MA USA
| | - Peter D. Fields
- Department of Environmental Sciences - Zoology; University of Basel; Basel Switzerland
| | - Dieter Ebert
- Department of Environmental Sciences - Zoology; University of Basel; Basel Switzerland
| |
Collapse
|
131
|
Gibson AK, Stoy KS, Lively CM. Bloody-minded parasites and sex: the effects of fluctuating virulence. J Evol Biol 2018; 31:611-620. [PMID: 29460507 PMCID: PMC5882519 DOI: 10.1111/jeb.13252] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Revised: 02/12/2018] [Accepted: 02/14/2018] [Indexed: 12/18/2022]
Abstract
Asexual lineages can grow at a faster rate than sexual lineages. Why then is sexual reproduction so widespread? Much empirical evidence supports the Red Queen hypothesis. Under this hypothesis, coevolving parasites favour sexual reproduction by adapting to infect common asexual clones and driving them down in frequency. One limitation, however, seems to challenge the generality of the Red Queen: in theoretical models, parasites must be very virulent to maintain sex. Moreover, experiments show virulence to be unstable, readily shifting in response to environmental conditions. Does variation in virulence further limit the ability of coevolving parasites to maintain sex? To address this question, we simulated temporal variation in virulence and evaluated the outcome of competition between sexual and asexual females. We found that variation in virulence did not limit the ability of coevolving parasites to maintain sex. In fact, relatively high variation in virulence promoted parasite-mediated maintenance of sex. With sufficient variation, sexual females persisted even when mean virulence fell well below the threshold virulence required to maintain sex under constant conditions. We conclude that natural variation in virulence does not limit the relevance of the Red Queen hypothesis for natural populations; on the contrary, it could expand the range of conditions over which coevolving parasites can maintain sex.
Collapse
Affiliation(s)
- Amanda K Gibson
- Department of Biology, Indiana University, Bloomington, IN, USA
- Department of Biology, Emory University, Atlanta, GA, USA
| | - Kayla S Stoy
- Department of Biology, Emory University, Atlanta, GA, USA
| | - Curtis M Lively
- Department of Biology, Indiana University, Bloomington, IN, USA
| |
Collapse
|
132
|
Feis ME, John U, Lokmer A, Luttikhuizen PC, Wegner KM. Dual transcriptomics reveals co-evolutionary mechanisms of intestinal parasite infections in blue mussels Mytilus edulis. Mol Ecol 2018; 27:1505-1519. [DOI: 10.1111/mec.14541] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2017] [Revised: 01/30/2018] [Accepted: 02/06/2018] [Indexed: 01/07/2023]
Affiliation(s)
- Marieke E. Feis
- Department Coastal Ecology; Wadden Sea Station Sylt; Alfred Wegener Institute; Helmholtz Centre for Polar and Marine Research; List/Sylt Germany
| | - Uwe John
- Department Ecological Chemistry; Alfred Wegener Institute; Helmholtz Centre for Polar and Marine Research; Bremerhaven Germany
- Helmholtz Institute for Functional Marine Biodiversity (HIFMB); Oldenburg Germany
| | - Ana Lokmer
- Department Coastal Ecology; Wadden Sea Station Sylt; Alfred Wegener Institute; Helmholtz Centre for Polar and Marine Research; List/Sylt Germany
| | - Pieternella C. Luttikhuizen
- NIOZ Royal Netherlands Institute for Sea Research; Department of Coastal Systems, and Utrecht University; Den Burg The Netherlands
| | - K. Mathias Wegner
- Department Coastal Ecology; Wadden Sea Station Sylt; Alfred Wegener Institute; Helmholtz Centre for Polar and Marine Research; List/Sylt Germany
| |
Collapse
|
133
|
The Evolutionary Biology, Ecology and Epidemiology of Coccidia of Passerine Birds. ADVANCES IN PARASITOLOGY 2018. [PMID: 29530310 DOI: 10.1016/bs.apar.2018.01.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Coccidia are intracellular parasites of the phylum Apicomplexa that cause a range of pathologies collectively termed coccidiosis. Species of coccidia of commercial importance have been well studied, with the effect of other species on passerine birds receiving increasing attention. In this chapter, we review the literature on coccidia in passerines, with a particular focus on wild populations. The taxonomy and life cycle of passerine coccidia are covered, as is their impact on the health of passerines, their epidemiology and their role in parasite-mediated natural and sexual selection. Coccidia can pose a significant threat to the health of wild passerine populations, and high rates of mortality have been observed in some studies. We examine some of the genetic factors that influence host resistance to coccidia and discuss how these parasites may be important in relation to sexually selected traits. General patterns are beginning to emerge with regard to the epidemiology of the parasites, and the influence of different aspects of the host's ecology on the prevalence and intensity of coccidia is being revealed. We examine these, as well exceptions, in addition to the phenomenon of diurnal oocyst shedding that can bias studies if not accounted for. Finally, we discuss potential future directions for research on coccidia in passerines and the importance of understanding parasite ecology in the management of threatened species.
Collapse
|
134
|
Cross-Resistance: A Consequence of Bi-partite Host-Parasite Coevolution. INSECTS 2018; 9:insects9010028. [PMID: 29495405 PMCID: PMC5872293 DOI: 10.3390/insects9010028] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Revised: 02/02/2018] [Accepted: 02/19/2018] [Indexed: 12/26/2022]
Abstract
Host-parasite coevolution can influence interactions of the host and parasite with the wider ecological community. One way that this may manifest is in cross-resistance towards other parasites, which has been observed to occur in some host-parasite evolution experiments. In this paper, we test for cross-resistance towards Bacillus thuringiensis and Pseudomonasentomophila in the red flour beetle Triboliumcastaneum, which was previously allowed to coevolve with the generalist entomopathogenic fungus Beauveriabassiana. We combine survival and gene expression assays upon infection to test for cross-resistance and underlying mechanisms. We show that larvae of T.castaneum that evolved with B.bassiana under coevolutionary conditions were positively cross-resistant to the bacterium B. thuringiensis, but not P.entomophila. Positive cross-resistance was mirrored at the gene expression level with markers that were representative of the oral route of infection being upregulated upon B.bassiana exposure. We find that positive cross-resistance towards B. thuringiensis evolved in T.castaneum as a consequence of its coevolutionary interactions with B.bassiana. This cross-resistance appears to be a consequence of resistance to oral toxicity. The fact that coevolution with B.bassiana results in resistance to B. thuringiensis, but not P.entomophila implies that B. thuringiensis and B.bassiana may share mechanisms of infection or toxicity not shared by P.entomophila. This supports previous suggestions that B.bassiana may possess Cry-like toxins, similar to those found in B. thuringiensis, which allow it to infect orally.
Collapse
|
135
|
Russell T, Madsen T, Thomas F, Raven N, Hamede R, Ujvari B. Oncogenesis as a Selective Force: Adaptive Evolution in the Face of a Transmissible Cancer. Bioessays 2018; 40. [DOI: 10.1002/bies.201700146] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2017] [Revised: 01/04/2018] [Indexed: 12/19/2022]
Affiliation(s)
- Tracey Russell
- School of Life and Environmental Sciences The University of SydneySydneyNSW2006Australia
| | - Thomas Madsen
- Centre for Integrative Ecology School of Life and Environmental Sciences Deakin UniversityWaurn PondsVictoria3218Australia
| | - Frédéric Thomas
- CREEC/MIVEGEC, UMR IRD/CNRS/UM 5290911 Avenue Agropolis, BP 6450134394 Montpellier Cedex 5France
| | - Nynke Raven
- Centre for Integrative Ecology School of Life and Environmental Sciences Deakin UniversityWaurn PondsVictoria3218Australia
| | - Rodrigo Hamede
- Centre for Integrative Ecology School of Life and Environmental Sciences Deakin UniversityWaurn PondsVictoria3218Australia
- School of Natural Sciences University of TasmaniaPrivate Bag 55HobartTasmania7001Australia
| | - Beata Ujvari
- Centre for Integrative Ecology School of Life and Environmental Sciences Deakin UniversityWaurn PondsVictoria3218Australia
- School of Natural Sciences University of TasmaniaPrivate Bag 55HobartTasmania7001Australia
| |
Collapse
|
136
|
Muraille E. Diversity Generator Mechanisms Are Essential Components of Biological Systems: The Two Queen Hypothesis. Front Microbiol 2018; 9:223. [PMID: 29487592 PMCID: PMC5816788 DOI: 10.3389/fmicb.2018.00223] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Accepted: 01/30/2018] [Indexed: 01/02/2023] Open
Abstract
Diversity is widely known to fuel adaptation and evolutionary processes and increase robustness at the population, species and ecosystem levels. The Neo-Darwinian paradigm proposes that the diversity of biological entities is the consequence of genetic changes arising spontaneously and randomly, without regard for their usefulness. However, a growing body of evidence demonstrates that the evolutionary process has shaped mechanisms, such as horizontal gene transfer mechanisms, meiosis and the adaptive immune system, which has resulted in the regulated generation of diversity among populations. Though their origins are unrelated, these diversity generator (DG) mechanisms share common functional properties. They (i) contribute to the great unpredictability of the composition and/or behavior of biological systems, (ii) favor robustness and collectivism among populations and (iii) operate mainly by manipulating the systems that control the interaction of living beings with their environment. The definition proposed here for DGs is based on these properties and can be used to identify them according to function. Interestingly, prokaryotic DGs appear to be mainly reactive, as they generate diversity in response to environmental stress. They are involved in the widely described Red Queen/arms race/Cairnsian dynamic. The emergence of multicellular organisms harboring K selection traits (longer reproductive life cycle and smaller population size) has led to the acquisition of a new class of DGs that act anticipatively to stress pressures and generate a distinct dynamic called the “White Queen” here. The existence of DGs leads to the view of evolution as a more “intelligent” and Lamarckian-like process. Their repeated selection during evolution could be a neglected example of convergent evolution and suggests that some parts of the evolutionary process are tightly constrained by ecological factors, such as the population size, the generation time and the intensity of selective pressure. The ubiquity of DGs also suggests that regulated auto-generation of diversity is a fundamental property of life.
Collapse
Affiliation(s)
- Eric Muraille
- Laboratoire de Parasitologie, Faculté de Médecine, Université Libre de Bruxelles, Brussels, Belgium
| |
Collapse
|
137
|
Phillips KP, Cable J, Mohammed RS, Herdegen-Radwan M, Raubic J, Przesmycka KJ, van Oosterhout C, Radwan J. Immunogenetic novelty confers a selective advantage in host-pathogen coevolution. Proc Natl Acad Sci U S A 2018; 115:1552-1557. [PMID: 29339521 PMCID: PMC5816137 DOI: 10.1073/pnas.1708597115] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
The major histocompatibility complex (MHC) is crucial to the adaptive immune response of vertebrates and is among the most polymorphic gene families known. Its high diversity is usually attributed to selection imposed by fast-evolving pathogens. Pathogens are thought to evolve to escape recognition by common immune alleles, and, hence, novel MHC alleles, introduced through mutation, recombination, or gene flow, are predicted to give hosts superior resistance. Although this theoretical prediction underpins host-pathogen "Red Queen" coevolution, it has not been demonstrated in the context of natural MHC diversity. Here, we experimentally tested whether novel MHC variants (both alleles and functional "supertypes") increased resistance of guppies (Poecilia reticulata) to a common ectoparasite (Gyrodactylus turnbulli). We used exposure-controlled infection trials with wild-sourced parasites, and Gyrodactylus-naïve host fish that were F2 descendants of crossed wild populations. Hosts carrying MHC variants (alleles or supertypes) that were new to a given parasite population experienced a 35-37% reduction in infection intensity, but the number of MHC variants carried by an individual, analogous to heterozygosity in single-locus systems, was not a significant predictor. Our results provide direct evidence of novel MHC variant advantage, confirming a fundamental mechanism underpinning the exceptional polymorphism of this gene family and highlighting the role of immunogenetic novelty in host-pathogen coevolution.
Collapse
Affiliation(s)
- Karl P Phillips
- Evolutionary Biology Group, Faculty of Biology, Adam Mickiewicz University, 60-614 Poznań, Poland
- School of Biological, Earth & Environmental Sciences, University College Cork, Cork, Ireland
| | - Joanne Cable
- School of Biosciences, Cardiff University, CF10 3AX Cardiff, United Kingdom
| | - Ryan S Mohammed
- Department of Life Sciences, The University of the West Indies, St. Augustine, Trinidad and Tobago
| | - Magdalena Herdegen-Radwan
- Department of Behavioural Ecology, Institute of Environmental Biology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznań, Poland
| | - Jarosław Raubic
- Evolutionary Biology Group, Faculty of Biology, Adam Mickiewicz University, 60-614 Poznań, Poland
| | - Karolina J Przesmycka
- Evolutionary Biology Group, Faculty of Biology, Adam Mickiewicz University, 60-614 Poznań, Poland
| | - Cock van Oosterhout
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, NR4 7TJ Norwich, United Kingdom
| | - Jacek Radwan
- Evolutionary Biology Group, Faculty of Biology, Adam Mickiewicz University, 60-614 Poznań, Poland;
| |
Collapse
|
138
|
|
139
|
Abstract
Long-term studies enable the identification of eco-evolutionary processes that occur over extended time periods. In addition, they provide key empirical data that may be used in predictive modelling to forecast evolutionary responses of natural ecosystems to future environmental changes. However, excluding a few exceptional cases, long-term studies are scarce because of logistic difficulties associated with accessing temporal samples. Temporal dynamics are frequently studied in the laboratory or in controlled mesocosm experiments with exceptional studies that reconstruct the evolution of natural populations in the wild. Here, a standard operating procedure (SOP) is provided to revive or resurrect dormant Daphnia magna, a widespread zooplankton keystone species in aquatic ecosystems, to dramatically advance the state-of-the-art longitudinal data collection in natural systems. The field of Resurrection Ecology was defined in 1999 by Kerfoot and co-workers, even though the first attempts at hatching diapausing zooplankton eggs date back to the late 1980s. Since Kerfoot's seminal paper, the methodology of resurrecting zooplankton species has been increasingly frequently applied, though propagated among laboratories only via direct knowledge transfer. Here, an SOP is described that provides a step-by-step protocol on the practice of resurrecting dormant Daphnia magna eggs. Two key studies are provided in which the fitness response of resurrected Daphnia magna populations to warming is measured, capitalizing on the ability to study historical and modern populations in the same settings. Finally, the application of next generation sequencing technologies to revived or still dormant stages is discussed. These technologies provide unprecedented power in dissecting the processes and mechanisms of evolution if applied to populations that have experienced changes in selection pressure over time.
Collapse
Affiliation(s)
| | - Luisa Orsini
- Environmental Genomics Group, School of Biosciences, University of Birmingham;
| |
Collapse
|
140
|
Almeida GMDF, Silva LCF, Colson P, Abrahao JS. Mimiviruses and the Human Interferon System: Viral Evasion of Classical Antiviral Activities, But Inhibition By a Novel Interferon-β Regulated Immunomodulatory Pathway. J Interferon Cytokine Res 2018; 37:1-8. [PMID: 28079476 DOI: 10.1089/jir.2016.0097] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
In this review we discuss the role of mimiviruses as potential human pathogens focusing on clinical and evolutionary evidence. We also propose a novel antiviral immunomodulatory pathway controlled by interferon-β (IFN-β) and mediated by immune-responsive gene 1 (IRG1) and itaconic acid, its product. Acanthamoeba polyphaga Mimivirus (APMV) was isolated from amoebae in a hospital while investigating a pneumonia outbreak. Mimivirus ubiquity and role as protist pathogens are well understood, and its putative status as a human pathogen has been gaining strength as more evidence is being found. The study of APMV and human cells interaction revealed that the virus is able to evade the IFN system by inhibiting the regulation of interferon-stimulated genes, suggesting that the virus and humans have had host-pathogen interactions. It also has shown that the virus is capable of growing on IFN-α2, but not on IFN-β-treated cells, hinting at an exclusive IFN-β antiviral pathway. Our hypothesis based on preliminary data and published articles is that IFN-β preferentially upregulates IRG1 in human macrophagic cells, which in turn produces itaconic acid. This metabolite links metabolism to antiviral activity by inactivating the virus, in a novel immunomodulatory pathway relevant for APMV infections and probably to other infectious diseases as well.
Collapse
Affiliation(s)
| | - Lorena C Ferreira Silva
- 2 Laboratorio de Virus, Departamento de Microbiologia, Universidade Federal de Minas Gerais , Belo Horizonte, Brazil
| | - Philippe Colson
- 3 Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix-Marseille Universite Faculté de Médecine , Marseille, France
| | - Jonatas Santos Abrahao
- 2 Laboratorio de Virus, Departamento de Microbiologia, Universidade Federal de Minas Gerais , Belo Horizonte, Brazil .,3 Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix-Marseille Universite Faculté de Médecine , Marseille, France
| |
Collapse
|
141
|
Turko P, Tellenbach C, Keller E, Tardent N, Keller B, Spaak P, Wolinska J. Parasites driving host diversity: Incidence of disease correlated with Daphnia clonal turnover. Evolution 2018; 72:619-629. [PMID: 29238958 DOI: 10.1111/evo.13413] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Revised: 11/16/2017] [Accepted: 12/05/2017] [Indexed: 11/30/2022]
Abstract
According to the Red Queen hypothesis, clonal diversity in asexual populations could be maintained by negative frequency-dependant selection by coevolving parasites. If common clones are selected against and rare clones gain a concomitant advantage, we expect that clonal turnover should be faster during parasite epidemics than between them. We tested this hypothesis exploring field data of the Daphnia-Caullerya host-parasite system. The clonal make-up and turnover of the Daphnia host population was tracked with high temporal resolution from 1998 until 2013, using first allozyme and later microsatellite markers. Significant differences in the clonal composition between random and infected subsamples of Daphnia populations were detected on six of seven tested occasions, confirming genetic specificity of the host-parasite interaction in this system. We used time series analysis to compare the rates of host clonal turnover to the incidence of parasitism, and found that Caullerya prevalence was significantly associated with microsatellite-based clonal turnover. As alternate hypotheses, we further tested whether turnover was related to a variety of biotic, abiotic, and host demographic parameters. Other significant correlates of turnover were cyanobacterial biomass and (weakly) temperature. Overall, parasitism seems to be a strong driver of host clonal turnover, in support of the Red Queen hypothesis.
Collapse
Affiliation(s)
- Patrick Turko
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland.,Institute of Integrative Biology, ETH Zurich, 8092 Zurich, Switzerland
| | - Christoph Tellenbach
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland
| | - Esther Keller
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland
| | - Nadine Tardent
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland
| | - Barbara Keller
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland.,Department of Systematic and Evolutionary Botany, University of Zurich, 8008 Zürich, Switzerland
| | - Piet Spaak
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland.,Institute of Integrative Biology, ETH Zurich, 8092 Zurich, Switzerland
| | - Justyna Wolinska
- Department of Ecosystem Research, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 301, 12587 Berlin, Germany.,Department of Biology, Chemistry, and Pharmacy, Institute of Biology, Freie Universität Berlin, Königin-Luise-Strasse 1-3, 14195 Berlin, Germany
| |
Collapse
|
142
|
Clonorchis sinensis and Clonorchiasis: The Relevance of Exploring Genetic Variation. ADVANCES IN PARASITOLOGY 2018; 100:155-208. [PMID: 29753338 DOI: 10.1016/bs.apar.2018.03.006] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Parasitic trematodes (flukes) cause substantial mortality and morbidity in humans. The Chinese liver fluke, Clonorchis sinensis, is one of the most destructive parasitic worms in humans in China, Vietnam, Korea and the Russian Far East. Although C. sinensis infection can be controlled relatively well using anthelmintics, the worm is carcinogenic, inducing cholangiocarcinoma and causing major suffering in ~15 million people in Asia. This chapter provides an account of C. sinensis and clonorchiasis research-covering aspects of biology, epidemiology, pathogenesis and immunity, diagnosis, treatment and control, genetics and genomics. It also describes progress in the area of molecular biology (genetics, genomics, transcriptomics and proteomics) and highlights challenges associated with comparative genomics and population genetics. It then reviews recent advances in the sequencing and characterisation of the mitochondrial and nuclear genomes for a Korean isolate of C. sinensis and summarises salient comparative genomic work and the implications thereof. The chapter concludes by considering how advances in genomic and informatics will enable research on the genetics of C. sinensis and related parasites, as well as the discovery of new fluke-specific intervention targets.
Collapse
|
143
|
Houwenhuyse S, Macke E, Reyserhove L, Bulteel L, Decaestecker E. Back to the future in a petri dish: Origin and impact of resurrected microbes in natural populations. Evol Appl 2018; 11:29-41. [PMID: 29302270 PMCID: PMC5748525 DOI: 10.1111/eva.12538] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2017] [Accepted: 08/14/2017] [Indexed: 12/17/2022] Open
Abstract
Current natural populations face new interactions because of the re-emergence of ancient microbes and viruses. These risks come from the re-emergence of pathogens kept in laboratories or from pathogens that are retained in the permafrost, which become available upon thawing due to climate change. We here focus on the effects of such re-emergence in natural host populations based on evolutionary theory of virulence and long-term studies, which investigate host-pathogen adaptations. Pathogens tend to be locally and temporally adapted to their co-occurring hosts, but when pathogens from a different environment or different time enter the host community, the degree to which a new host-pathogen interaction is a threat will depend on the specific genotypic associations, the time lag between the host and the pathogen, and the interactions with native or recent host and pathogen species. Some insights can be obtained from long-term studies using a resurrection ecology approach. These long-term studies based on time-shift experiments are essential to obtain insight into the mechanisms underlying host-pathogen coevolution at several ecological and temporal scales. As past pathogens and their corresponding host(s) can differ in infectivity and susceptibility, strong reciprocal selective pressures can be induced by the pathogen. These strong selective pressures often result in an escalating arms race, but do not necessarily result in increased infectivity over time. Human health can also be impacted by these resurrected pathogens as the majority of emerging infectious diseases are zoonoses, which are infectious diseases originating from animal populations naturally transmitted to humans. The sanitary risk associated with pathogen emergence from different environments (spatial or temporal) depends on a combination of socioeconomic, environmental, and ecological factors that affect the virulence or the pathogenic potential of microbes and their ability to infect susceptible host populations.
Collapse
|
144
|
Herrmann M, Ravindran SP, Schwenk K, Cordellier M. Population transcriptomics in Daphnia
: The role of thermal selection. Mol Ecol 2017; 27:387-402. [DOI: 10.1111/mec.14450] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 10/22/2017] [Accepted: 11/02/2017] [Indexed: 12/30/2022]
Affiliation(s)
- Maike Herrmann
- Institute for Environmental Sciences; University Koblenz-Landau; Landau in der Pfalz Germany
| | | | - Klaus Schwenk
- Institute for Environmental Sciences; University Koblenz-Landau; Landau in der Pfalz Germany
| | | |
Collapse
|
145
|
Schrom EC, Prada JM, Graham AL. Immune Signaling Networks: Sources of Robustness and Constrained Evolvability during Coevolution. Mol Biol Evol 2017; 35:676-687. [PMID: 29294066 DOI: 10.1093/molbev/msx321] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Defense against infection incurs costs as well as benefits that are expected to shape the evolution of optimal defense strategies. In particular, many theoretical studies have investigated contexts favoring constitutive versus inducible defenses. However, even when one immune strategy is theoretically optimal, it may be evolutionarily unachievable. This is because evolution proceeds via mutational changes to the protein interaction networks underlying immune responses, not by changes to an immune strategy directly. Here, we use a theoretical simulation model to examine how underlying network architectures constrain the evolution of immune strategies, and how these network architectures account for desirable immune properties such as inducibility and robustness. We focus on immune signaling because signaling molecules are common targets of parasitic interference but are rarely studied in this context. We find that in the presence of a coevolving parasite that disrupts immune signaling, hosts evolve constitutive defenses even when inducible defenses are theoretically optimal. This occurs for two reasons. First, there are relatively few network architectures that produce immunity that is both inducible and also robust against targeted disruption. Second, evolution toward these few robust inducible network architectures often requires intermediate steps that are vulnerable to targeted disruption. The few networks that are both robust and inducible consist of many parallel pathways of immune signaling with few connections among them. In the context of relevant empirical literature, we discuss whether this is indeed the most evolutionarily accessible robust inducible network architecture in nature, and when it can evolve.
Collapse
Affiliation(s)
- Edward C Schrom
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ
| | - Joaquín M Prada
- Mathematics Institute, University of Warwick, Coventry, United Kingdom.,Faculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom
| | - Andrea L Graham
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ
| |
Collapse
|
146
|
Bonachela JA, Wortel MT, Stenseth NC. Eco-evolutionary Red Queen dynamics regulate biodiversity in a metabolite-driven microbial system. Sci Rep 2017; 7:17655. [PMID: 29247226 PMCID: PMC5732168 DOI: 10.1038/s41598-017-17774-4] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Accepted: 11/29/2017] [Indexed: 01/18/2023] Open
Abstract
The Red Queen Hypothesis proposes that perpetual co-evolution among organisms can result from purely biotic drivers. After more than four decades, there is no satisfactory understanding as to which mechanisms trigger Red Queen dynamics or their implications for ecosystem features such as biodiversity. One reason for such a knowledge gap is that typical models are complicated theories where limit cycles represent an idealized Red Queen, and therefore cannot be used to devise experimental setups. Here, we bridge this gap by introducing a simple model for microbial systems able to show Red Queen dynamics. We explore diverse biotic sources that can drive the emergence of the Red Queen and that have the potential to be found in nature or to be replicated in the laboratory. Our model enables an analytical understanding of how Red Queen dynamics emerge in our setup, and the translation of model terms and phenomenology into general underlying mechanisms. We observe, for example, that in our system the Red Queen offers opportunities for the increase of biodiversity by facilitating challenging conditions for intraspecific dominance, whereas stasis tends to homogenize the system. Our results can be used to design and engineer experimental microbial systems showing Red Queen dynamics.
Collapse
Affiliation(s)
- Juan A Bonachela
- Marine Population Modeling Group, Department of Mathematics and Statistics, University of Strathclyde, Glasgow, G1 1XH, Scotland, UK.
- Department of Ecology, Evolution, and Natural Resources, 14 College Farm Rd, New Brunswick, NJ 08901, USA.
| | - Meike T Wortel
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, PO Box 1066 Blindern, Oslo, 0316, Norway
| | - Nils Chr Stenseth
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, PO Box 1066 Blindern, Oslo, 0316, Norway
| |
Collapse
|
147
|
Auld SKJR, Tinkler SK, Tinsley MC. Sex as a strategy against rapidly evolving parasites. Proc Biol Sci 2017; 283:rspb.2016.2226. [PMID: 28003455 PMCID: PMC5204169 DOI: 10.1098/rspb.2016.2226] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Accepted: 11/18/2016] [Indexed: 11/20/2022] Open
Abstract
Why is sex ubiquitous when asexual reproduction is much less costly? Sex disrupts coadapted gene complexes; it also causes costs associated with mate finding and the production of males who do not themselves bear offspring. Theory predicts parasites select for host sex, because genetically variable offspring can escape infection from parasites adapted to infect the previous generations. We examine this using a facultative sexual crustacean, Daphnia magna, and its sterilizing bacterial parasite, Pasteuria ramosa. We obtained sexually and asexually produced offspring from wild-caught hosts and exposed them to contemporary parasites or parasites isolated from the same population one year later. We found rapid parasite adaptation to replicate within asexual but not sexual offspring. Moreover, sexually produced offspring were twice as resistant to infection as asexuals when exposed to parasites that had coevolved alongside their parents (i.e. the year two parasite). This fulfils the requirement that the benefits of sex must be both large and rapid for sex to be favoured by selection.
Collapse
Affiliation(s)
- Stuart K J R Auld
- Division of Biological and Environmental Sciences, University of Stirling, Room 3B164, Cottrell Building, Stirling, Stirlingshire FK9 4LA, UK
| | - Shona K Tinkler
- Division of Biological and Environmental Sciences, University of Stirling, Room 3B164, Cottrell Building, Stirling, Stirlingshire FK9 4LA, UK
| | - Matthew C Tinsley
- Division of Biological and Environmental Sciences, University of Stirling, Room 3B164, Cottrell Building, Stirling, Stirlingshire FK9 4LA, UK
| |
Collapse
|
148
|
Blanquart F, Valero M, Alves-de-Souza C, Dia A, Lepelletier F, Bigeard E, Jeanthon C, Destombe C, Guillou L. Evidence for parasite-mediated selection during short-lasting toxic algal blooms. Proc Biol Sci 2017; 283:rspb.2016.1870. [PMID: 27798309 PMCID: PMC5095388 DOI: 10.1098/rspb.2016.1870] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Accepted: 09/28/2016] [Indexed: 11/30/2022] Open
Abstract
Parasites play a role in the control of transient algal blooms, but it is not known whether parasite-mediated selection results in coevolution of the host and the parasites over this short time span. We investigated the presence of coevolution between the toxic dinoflagellate Alexandrium minutum and two naturally occurring endoparasites during blooms lasting a month in two river estuaries, using cross-inoculation experiments across time and space. Higher parasite abundance was associated with a large daily reduction in relative A. minutum abundances, demonstrating strong parasite-mediated selection. There was genetic variability in infectivity in both parasite species, and in resistance in the host. We found no evidence for coevolution in one estuary; however, in the other estuary, we found high genetic diversity in the two parasite species, fluctuations in infectivity and suggestion that the two parasites are well adapted to their host, as in ‘Red Queen’ dynamics. Thus, coevolution is possible over the short time span of a bloom, but geographically variable, and may feedback on community dynamics.
Collapse
Affiliation(s)
- François Blanquart
- Department of Infectious Disease Epidemiology, Imperial College London, Norfolk Place, London W2 1PG, UK
| | - Myriam Valero
- Station Biologique de Roscoff, Sorbonne Universités, Université Pierre et Marie Curie (Paris VI), Place Georges Teissier, CS90074, 29688 Roscoff, France.,CNRS, UMI 3614, Pontifica Universidad Catolica de Chile, Universidad Austral de Chile, Place Georges Teissier, CS90074, 29688 Roscoff, France
| | - Catharina Alves-de-Souza
- Departamento de Botânica, Museu Nacional, Universidade Federal do Rio de Janeiro, Quinta da Boa Vista, s/n, São Cristovão, Rio de Janeiro, RJ, Brazil
| | - Aliou Dia
- Station Biologique de Roscoff, Sorbonne Universités, Université Pierre et Marie Curie (Paris VI), Place Georges Teissier, CS90074, 29688 Roscoff, France.,Station Biologique de Roscoff, CNRS, UMR 7144, Place Georges Teissier, CS90074, 29688 Roscoff, France
| | - Frédéric Lepelletier
- Station Biologique de Roscoff, Sorbonne Universités, Université Pierre et Marie Curie (Paris VI), Place Georges Teissier, CS90074, 29688 Roscoff, France.,Station Biologique de Roscoff, CNRS, UMR 7144, Place Georges Teissier, CS90074, 29688 Roscoff, France
| | - Estelle Bigeard
- Station Biologique de Roscoff, Sorbonne Universités, Université Pierre et Marie Curie (Paris VI), Place Georges Teissier, CS90074, 29688 Roscoff, France.,Station Biologique de Roscoff, CNRS, UMR 7144, Place Georges Teissier, CS90074, 29688 Roscoff, France
| | - Christian Jeanthon
- Station Biologique de Roscoff, Sorbonne Universités, Université Pierre et Marie Curie (Paris VI), Place Georges Teissier, CS90074, 29688 Roscoff, France.,Station Biologique de Roscoff, CNRS, UMR 7144, Place Georges Teissier, CS90074, 29688 Roscoff, France
| | - Christophe Destombe
- Station Biologique de Roscoff, Sorbonne Universités, Université Pierre et Marie Curie (Paris VI), Place Georges Teissier, CS90074, 29688 Roscoff, France.,CNRS, UMI 3614, Pontifica Universidad Catolica de Chile, Universidad Austral de Chile, Place Georges Teissier, CS90074, 29688 Roscoff, France
| | - Laure Guillou
- Station Biologique de Roscoff, Sorbonne Universités, Université Pierre et Marie Curie (Paris VI), Place Georges Teissier, CS90074, 29688 Roscoff, France .,Station Biologique de Roscoff, CNRS, UMR 7144, Place Georges Teissier, CS90074, 29688 Roscoff, France
| |
Collapse
|
149
|
Auld SKJR, Brand J. Simulated climate change, epidemic size, and host evolution across host-parasite populations. GLOBAL CHANGE BIOLOGY 2017; 23:5045-5053. [PMID: 28544153 DOI: 10.1111/gcb.13769] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Accepted: 05/15/2017] [Indexed: 06/07/2023]
Abstract
Climate change is causing warmer and more variable temperatures as well as physical flux in natural populations, which will affect the ecology and evolution of infectious disease epidemics. Using replicate seminatural populations of a coevolving freshwater invertebrate-parasite system (host: Daphnia magna, parasite: Pasteuria ramosa), we quantified the effects of ambient temperature and population mixing (physical flux within populations) on epidemic size and population health. Each population was seeded with an identical suite of host genotypes and dose of parasite transmission spores. Biologically reasonable increases in environmental temperature caused larger epidemics, and population mixing reduced overall epidemic size. Mixing also had a detrimental effect on host populations independent of disease. Epidemics drove parasite-mediated selection, leading to a loss of host genetic diversity, and mixed populations experienced greater evolution due to genetic drift over the season. These findings further our understanding of how diversity loss will reduce the host populations' capacity to respond to changes in selection, therefore stymying adaptation to further environmental change.
Collapse
Affiliation(s)
- Stuart K J R Auld
- Biological & Environmental Sciences, University of Stirling, Stirling, UK
| | - June Brand
- Biological & Environmental Sciences, University of Stirling, Stirling, UK
| |
Collapse
|
150
|
Hillesland KL. Evolution on the bright side of life: microorganisms and the evolution of mutualism. Ann N Y Acad Sci 2017; 1422:88-103. [PMID: 29194650 DOI: 10.1111/nyas.13515] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 09/05/2017] [Accepted: 09/11/2017] [Indexed: 01/15/2023]
Abstract
Mutualistic interactions, where two interacting species have a net beneficial effect on each other's fitness, play a crucial role in the survival and evolution of many species. Despite substantial empirical and theoretical work in past decades, the impact of these interactions on natural selection is not fully understood. In addition, mutualisms between microorganisms have been largely ignored, even though they are ecologically important and can be used as tools to bridge the gap between theory and empirical work. Here, I describe two problems with our current understanding of natural selection in mutualism and highlight the properties of microbial mutualisms that could help solve them. One problem is that bias and methodological problems have limited our understanding of the variety of mechanisms by which species may adapt to mutualism. Another problem is that it is rare for experiments testing coevolution in mutualism to address whether each species has adapted to evolutionary changes in its partner. These problems can be addressed with genome resequencing and time-shift experiments, techniques that are easier to perform in microorganisms. In addition, microbial mutualisms may inspire novel insights and hypotheses about natural selection in mutualism.
Collapse
|