101
|
Castiblanco LF, Sundin GW. Cellulose production, activated by cyclic di-GMP through BcsA and BcsZ, is a virulence factor and an essential determinant of the three-dimensional architectures of biofilms formed by Erwinia amylovora Ea1189. MOLECULAR PLANT PATHOLOGY 2018; 19:90-103. [PMID: 27753193 PMCID: PMC6638026 DOI: 10.1111/mpp.12501] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Revised: 10/10/2016] [Accepted: 10/13/2016] [Indexed: 05/04/2023]
Abstract
Bacterial biofilms are multicellular aggregates encased in an extracellular matrix mainly composed of exopolysaccharides (EPSs), protein and nucleic acids, which determines the architecture of the biofilm. Erwinia amylovora Ea1189 forms a biofilm inside the xylem of its host, which results in vessel plugging and water transport impairment. The production of the EPSs amylovoran and levan is critical for the formation of a mature biofilm. In addition, cyclic dimeric GMP (c-di-GMP) has been reported to positively regulate amylovoran biosynthesis and biofilm formation in E. amylovora Ea1189. In this study, we demonstrate that cellulose is synthesized by E. amylovora Ea1189 and is a major modulator of the three-dimensional characteristics of biofilms formed by this bacterium, and also contributes to virulence during systemic host invasion. In addition, we demonstrate that the activation of cellulose biosynthesis in E. amylovora is a c-di-GMP-dependent process, through allosteric binding to the cellulose catalytic subunit BcsA. We also report that the endoglucanase BcsZ is a key player in c-di-GMP activation of cellulose biosynthesis. Our results provide evidence of the complex composition of the extracellular matrix produced by E. amylovora and the implications of cellulose biosynthesis in shaping the architecture of the biofilm and in the expression of one of the main virulence phenotypes of this pathogen.
Collapse
Affiliation(s)
- Luisa F. Castiblanco
- Department of Plant, Soil and Microbial Sciences and Center for Microbial PathogenesisMichigan State UniversityEast LansingMI48824USA
| | - George W. Sundin
- Department of Plant, Soil and Microbial Sciences and Center for Microbial PathogenesisMichigan State UniversityEast LansingMI48824USA
| |
Collapse
|
102
|
Shim I, Law R, Kileeg Z, Stronghill P, Northey JGB, Strap JL, Bonetta DT. Alleles Causing Resistance to Isoxaben and Flupoxam Highlight the Significance of Transmembrane Domains for CESA Protein Function. FRONTIERS IN PLANT SCIENCE 2018; 9:1152. [PMID: 30197649 PMCID: PMC6118223 DOI: 10.3389/fpls.2018.01152] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Accepted: 07/19/2018] [Indexed: 05/13/2023]
Abstract
The cellulose synthase (CESA) proteins in Arabidopsis play an essential role in the production of cellulose in the cell walls. Herbicides such as isoxaben and flupoxam specifically target this production process and are prominent cellulose biosynthesis inhibitors (CBIs). Forward genetic screens in Arabidopsis revealed that mutations that can result in varying degrees of resistance to either isoxaben or flupoxam CBI can be attributed to single amino acid substitutions in primary wall CESAs. Missense mutations were almost exclusively present in the predicted transmembrane regions of CESA1, CESA3, and CESA6. Resistance to isoxaben was also conferred by modification to the catalytic residues of CESA3. This resulted in cellulose deficient phenotypes characterized by reduced crystallinity and dwarfism. However, mapping of mutations to the transmembrane regions also lead to growth phenotypes and altered cellulose crystallinity phenotypes. These results provide further genetic evidence supporting the involvement of CESA transmembrane regions in cellulose biosynthesis.
Collapse
Affiliation(s)
- Isaac Shim
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON, Canada
| | - Robert Law
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON, Canada
| | - Zachary Kileeg
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON, Canada
| | - Patricia Stronghill
- Department of Biological Sciences, University of Toronto Scarborough Campus, Toronto, ON, Canada
| | - Julian G. B. Northey
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON, Canada
| | - Janice L. Strap
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON, Canada
| | - Dario T. Bonetta
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON, Canada
- *Correspondence: Dario T. Bonetta,
| |
Collapse
|
103
|
Ojima Y, Nunogami S, Azuma M, Taya M. Displaying a recombinant protein on flocs self-produced by Escherichia coli through fused expression with elongation factor Ts. Enzyme Microb Technol 2018; 108:21-25. [DOI: 10.1016/j.enzmictec.2017.08.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 08/23/2017] [Accepted: 08/24/2017] [Indexed: 11/17/2022]
|
104
|
Insights into the structure and assembly of a bacterial cellulose secretion system. Nat Commun 2017; 8:2065. [PMID: 29234007 PMCID: PMC5727187 DOI: 10.1038/s41467-017-01523-2] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Accepted: 09/25/2017] [Indexed: 12/20/2022] Open
Abstract
Secreted exopolysaccharides present important determinants for bacterial biofilm formation, survival, and virulence. Cellulose secretion typically requires the concerted action of a c-di-GMP-responsive inner membrane synthase (BcsA), an accessory membrane-anchored protein (BcsB), and several additional Bcs components. Although the BcsAB catalytic duo has been studied in great detail, its interplay with co-expressed subunits remains enigmatic. Here we show that E. coli Bcs proteins partake in a complex protein interaction network. Electron microscopy reveals a stable, megadalton-sized macromolecular assembly, which encompasses most of the inner membrane and cytosolic Bcs components and features a previously unobserved asymmetric architecture. Heterologous reconstitution and mutational analyses point toward a structure-function model, where accessory proteins regulate secretion by affecting both the assembly and stability of the system. Altogether, these results lay the foundation for more comprehensive models of synthase-dependent exopolysaccharide secretion in biofilms and add a sophisticated secretory nanomachine to the diverse bacterial arsenal for virulence and adaptation.
Collapse
|
105
|
Thiol Starvation Induces Redox-Mediated Dysregulation of Escherichia coli Biofilm Components. J Bacteriol 2017; 200:JB.00389-17. [PMID: 29038256 DOI: 10.1128/jb.00389-17] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Accepted: 10/06/2017] [Indexed: 11/20/2022] Open
Abstract
A hallmark of bacterial biofilms is the production of an extracellular matrix (ECM) that encases and protects the community from environmental stressors. Biofilm formation is an integral portion of the uropathogenic Escherichia coli (UPEC) life cycle. Approximately 2% of UPEC isolates are cysteine auxotrophs. Here, we investigated how cysteine homeostasis impacted UPEC UTI89 strain biofilm formation and, specifically, the production of the ECM components curli and cellulose. Cysteine auxotrophs produced less cellulose and slightly more curli compared to wild-type (WT) strains, and cysteine auxotrophs formed smooth, nonrugose colonies. Cellulose production was restored in cysteine auxotrophs when YfiR was inactivated. YfiR is a redox-sensitive regulator of the diguanylate cyclase, YfiN. The production of curli, a temperature-regulated appendage, was independent of temperature in UTI89 cysteine auxotrophs. In a screen of UPEC isolates, we found that ∼60% of UPEC cysteine auxotrophs produced curli at 37°C, but only ∼2% of cysteine prototrophic UPEC isolates produced curli at 37°C. Interestingly, sublethal concentrations of amdinocillin and trimethoprim-sulfamethoxazole inhibited curli production, whereas strains auxotrophic for cysteine continued to produce curli even in the presence of amdinocillin and trimethoprim-sulfamethoxazole. The dysregulation of ECM components and resistance to amdinocillin in cysteine auxotrophs may be linked to hyperoxidation, since the addition of exogenous cysteine or glutathione restored WT biofilm phenotypes to mutants unable to produce cysteine and glutathione.IMPORTANCE Uropathogenic Escherichia coli (UPEC) bacteria are the predominant causative agent of urinary tract infections (UTIs). UTIs account for billions of dollars of financial burden annually to the health care industry in the United States. Biofilms are an important aspect of the UPEC pathogenesis cascade and for the establishment of chronic infections. Approximately 2% of UPEC isolates from UTIs are cysteine auxotrophs, yet there is relatively little known about the biofilm formation of UPEC cysteine auxotrophs. Here we show that cysteine auxotrophs have dysregulated biofilm components due to a change in the redox state of the periplasm. Additionally, we show the relationship between cysteine auxotrophs, biofilms, and antibiotics frequently used to treat UTIs.
Collapse
|
106
|
Buldum G, Bismarck A, Mantalaris A. Recombinant biosynthesis of bacterial cellulose in genetically modified Escherichia coli. Bioprocess Biosyst Eng 2017; 41:265-279. [PMID: 29177720 PMCID: PMC5773641 DOI: 10.1007/s00449-017-1864-1] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Accepted: 11/04/2017] [Indexed: 01/16/2023]
Abstract
Bacterial cellulose (BC) exhibits unique properties such as high purity compared to plant-based cellulose; however, commercial production of BC has remained a challenge, primarily due to the strain properties of cellulose-producing bacteria. Herein, we developed a functional and stable BC production system in genetically modified (GM) Escherichia coli by recombinant expression of both the BC synthase operon (bcsABCD) and the upstream operon (cmcax, ccpAx). BC production was achieved in GM HMS174 (DE3) and in GM C41 (DE3) by optimization of the culture temperature (22 °C, 30 °C, and 37 °C) and IPTG concentration. BC biosynthesis was detected much earlier in GM C41 (DE3) cultures (3 h after IPTG induction) than those of Gluconacetobacter hansenii. GM HMS174 (DE3) produced dense fibres having a length of approximately 1000–3000 μm and a diameter of 10–20 μm, which were remarkably larger than the fibres of BC typically produced by G. hansenii.
Collapse
Affiliation(s)
- Gizem Buldum
- Biological Systems Engineering Laboratory (BSEL), Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
- Department of Bioengineering, Marmara University, Göztepe Campus, Istanbul, Turkey
| | - Alexander Bismarck
- Polymer and Composite Engineering (PaCE) Group, Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
- Polymer and Composite Engineering (PaCE) Group, Institute of Materials Chemistry and Research, Faculty of Chemistry, University of Vienna, Währinger Str. 42, 1090 Vienna, Austria
| | - Athanasios Mantalaris
- Biological Systems Engineering Laboratory (BSEL), Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ UK
| |
Collapse
|
107
|
Nojima S, Fujishima A, Kato K, Ohuchi K, Shimizu N, Yonezawa K, Tajima K, Yao M. Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthesis subunit C. Sci Rep 2017; 7:13018. [PMID: 29026093 PMCID: PMC5638805 DOI: 10.1038/s41598-017-12530-0] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2017] [Accepted: 09/12/2017] [Indexed: 01/20/2023] Open
Abstract
Bacterial cellulose (BC) is synthesized and exported through the cell membrane via a large protein complex (terminal complex) that consists of three or four subunits. BcsC is a little-studied subunit considered to export BC to the extracellular matrix. It is predicted to have two domains: a tetratrico peptide repeat (TPR) domain and a β-barrelled outer membrane domain. Here we report the crystal structure of the N-terminal part of BcsC-TPR domain (Asp24-Arg272) derived from Enterobacter CJF-002. Unlike most TPR-containing proteins which have continuous TPR motifs, this structure has an extra α-helix between two clusters of TPR motifs. Five independent molecules in the crystal had three different conformations that varied at the hinge of the inserted α-helix. Such structural feature indicates that the inserted α-helix confers flexibility to the chain and changes the direction of the TPR super-helix, which was also suggested by structural analysis of BcsC-TPR (Asp24-Leu664) in solution by size exclusion chromatography-small-angle X-ray scattering. The flexibility at the α-helical hinge may play important role for exporting glucan chains.
Collapse
Affiliation(s)
- Shingo Nojima
- Graduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan
| | - Ayumi Fujishima
- Graduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan
| | - Koji Kato
- Graduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.,Faculty of Advanced Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan
| | - Kayoko Ohuchi
- Graduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan
| | - Nobutaka Shimizu
- Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan
| | - Kento Yonezawa
- Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan
| | - Kenji Tajima
- Faculty of Engineering, Hokkaido University, Sapporo, Hokkaido, 060-8628, Japan
| | - Min Yao
- Graduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan. .,Faculty of Advanced Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.
| |
Collapse
|
108
|
Cho SH, Purushotham P, Fang C, Maranas C, Díaz-Moreno SM, Bulone V, Zimmer J, Kumar M, Nixon BT. Synthesis and Self-Assembly of Cellulose Microfibrils from Reconstituted Cellulose Synthase. PLANT PHYSIOLOGY 2017; 175:146-156. [PMID: 28768815 PMCID: PMC5580757 DOI: 10.1104/pp.17.00619] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 07/29/2017] [Indexed: 05/04/2023]
Abstract
Cellulose, the major component of plant cell walls, can be converted to bioethanol and is thus highly studied. In plants, cellulose is produced by cellulose synthase, a processive family-2 glycosyltransferase. In plant cell walls, individual β-1,4-glucan chains polymerized by CesA are assembled into microfibrils that are frequently bundled into macrofibrils. An in vitro system in which cellulose is synthesized and assembled into fibrils would facilitate detailed study of this process. Here, we report the heterologous expression and partial purification of His-tagged CesA5 from Physcomitrella patens Immunoblot analysis and mass spectrometry confirmed enrichment of PpCesA5. The recombinant protein was functional when reconstituted into liposomes made from yeast total lipid extract. The functional studies included incorporation of radiolabeled Glc, linkage analysis, and imaging of cellulose microfibril formation using transmission electron microscopy. Several microfibrils were observed either inside or on the outer surface of proteoliposomes, and strikingly, several thinner fibrils formed ordered bundles that either covered the surfaces of proteoliposomes or were spawned from liposome surfaces. We also report this arrangement of fibrils made by proteoliposomes bearing CesA8 from hybrid aspen. These observations describe minimal systems of membrane-reconstituted CesAs that polymerize β-1,4-glucan chains that coalesce to form microfibrils and higher-ordered macrofibrils. How these micro- and macrofibrils relate to those found in primary and secondary plant cell walls is uncertain, but their presence enables further study of the mechanisms that govern the formation and assembly of fibrillar cellulosic structures and cell wall composites during or after the polymerization process controlled by CesA proteins.
Collapse
Affiliation(s)
- Sung Hyun Cho
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Pallinti Purushotham
- Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, Virginia 22908
| | - Chao Fang
- Department of Chemical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Cassandra Maranas
- Department of Chemical Engineering, University of Washington, Seattle, Washington 98105
| | - Sara M Díaz-Moreno
- Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), Stockholm, SE-10691, Sweden
| | - Vincent Bulone
- Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), Stockholm, SE-10691, Sweden
- Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae 5064, South Australia, Australia
| | - Jochen Zimmer
- Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, Virginia 22908
| | - Manish Kumar
- Department of Chemical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - B Tracy Nixon
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| |
Collapse
|
109
|
Sajadi E, Babaipour V, Deldar AA, Yakhchali B, Fatemi SSA. Enhancement of crystallinity of cellulose produced by Escherichia coli through heterologous expression of bcsD gene from Gluconacetobacter xylinus. Biotechnol Lett 2017; 39:1395-1401. [PMID: 28573539 DOI: 10.1007/s10529-017-2366-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2017] [Accepted: 05/25/2017] [Indexed: 01/11/2023]
Abstract
OBJECTIVES To evaluate the crystallinity index of the cellulose produced by Escherichia coli Nissle 1917 after heterologous expression of the cellulose synthase subunit D (bcsD) gene of Gluconacetobacter xylinus BPR2001. RESULTS The bcsD gene of G. xylinus BPR2001 was expressed in E. coli and its protein product was visualized using SDS-PAGE. FTIR analysis showed that the crystallinity index of the cellulose produced by the recombinants was 0.84, which is 17% more than that of the wild type strain. The increased crystallinity index was also confirmed by X-ray diffraction analysis. The cellulose content was not changed significantly after over-expressing the bcsD. CONCLUSION The bcsD gene can improve the crystalline structure of the bacterial cellulose but there is not any significant difference between the amounts of cellulose produced by the recombinant and wild type E. coli Nissle 1917.
Collapse
Affiliation(s)
- Elaheh Sajadi
- Department of Systems Biotechnology, Institute of Industrial and Environmental Biotechnology (IIEB), National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, P.O. Box: 14965/161, Iran
| | | | | | - Bagher Yakhchali
- Department of Systems Biotechnology, Institute of Industrial and Environmental Biotechnology (IIEB), National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, P.O. Box: 14965/161, Iran
| | - Seyed Safa-Ali Fatemi
- Department of Systems Biotechnology, Institute of Industrial and Environmental Biotechnology (IIEB), National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, P.O. Box: 14965/161, Iran.
| |
Collapse
|
110
|
Rende U, Wang W, Gandla ML, Jönsson LJ, Niittylä T. Cytosolic invertase contributes to the supply of substrate for cellulose biosynthesis in developing wood. THE NEW PHYTOLOGIST 2017; 214:796-807. [PMID: 28032636 DOI: 10.1111/nph.14392] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2016] [Accepted: 11/18/2016] [Indexed: 05/08/2023]
Abstract
Carbon for cellulose biosynthesis is derived from sucrose. Cellulose is synthesized from uridine 5'-diphosphoglucose (UDP-glucose), but the enzyme(s) responsible for the initial sucrose cleavage and the source of UDP-glucose for cellulose biosynthesis in developing wood have not been defined. We investigated the role of CYTOSOLIC INVERTASEs (CINs) during wood formation in hybrid aspen (Populus tremula × tremuloides) and characterized transgenic lines with reduced CIN activity during secondary cell wall biosynthesis. Suppression of CIN activity by 38-55% led to a 9-13% reduction in crystalline cellulose. The changes in cellulose were reflected in reduced diameter of acid-insoluble cellulose microfibrils and increased glucose release from wood upon enzymatic digestion of cellulose. Reduced CIN activity decreased the amount of the cellulose biosynthesis precursor UDP-glucose in developing wood, pointing to the likely cause of the cellulose phenotype. The findings suggest that CIN activity has an important role in the cellulose biosynthesis of trees, and indicate that cellulose biosynthesis in wood relies on a quantifiable UDP-glucose pool. The results also introduce a concept of altering cellulose microfibril properties by modifying substrate supply to cellulose biosynthesis.
Collapse
Affiliation(s)
- Umut Rende
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE 901 83, Umeå, Sweden
| | - Wei Wang
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE 901 83, Umeå, Sweden
| | | | - Leif J Jönsson
- Department of Chemistry, Umeå University, SE 901 87, Umeå, Sweden
| | - Totte Niittylä
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE 901 83, Umeå, Sweden
| |
Collapse
|
111
|
Wang SS, Han YH, Ye YX, Shi XX, Xiang P, Chen DL, Li M. Physicochemical characterization of high-quality bacterial cellulose produced by Komagataeibacter sp. strain W1 and identification of the associated genes in bacterial cellulose production. RSC Adv 2017. [DOI: 10.1039/c7ra08391b] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Komagataeibacter sp. W1 produced high-quality BC, the properties and synthesis mechanisms of which were analyzed by SEM, XRD and FTIR, and genome sequencing, respectively.
Collapse
Affiliation(s)
- Shan-Shan Wang
- College of Life Science
- Fujian Normal University
- Fuzhou
- China
- Quangang Petrochemical Research Institute
| | - Yong-He Han
- Quangang Petrochemical Research Institute
- Fujian Normal University
- Quanzhou
- China
| | - Yu-Xuan Ye
- State Key Laboratory of Pollution Control and Resource Reuse
- School of the Environment
- Nanjing University
- China
| | - Xiao-Xia Shi
- State Key Laboratory of Pollution Control and Resource Reuse
- School of the Environment
- Nanjing University
- China
| | - Ping Xiang
- State Key Laboratory of Pollution Control and Resource Reuse
- School of the Environment
- Nanjing University
- China
| | - Deng-Long Chen
- Quangang Petrochemical Research Institute
- Fujian Normal University
- Quanzhou
- China
- College of Environmental Science and Engineering
| | - Min Li
- College of Life Science
- Fujian Normal University
- Fuzhou
- China
| |
Collapse
|
112
|
Sun SJ, Horikawa Y, Wada M, Sugiyama J, Imai T. Site-directed mutagenesis of bacterial cellulose synthase highlights sulfur–arene interaction as key to catalysis. Carbohydr Res 2016; 434:99-106. [DOI: 10.1016/j.carres.2016.08.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 08/26/2016] [Accepted: 08/27/2016] [Indexed: 01/06/2023]
|
113
|
A single heterologously expressed plant cellulose synthase isoform is sufficient for cellulose microfibril formation in vitro. Proc Natl Acad Sci U S A 2016; 113:11360-11365. [PMID: 27647898 DOI: 10.1073/pnas.1606210113] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Plant cell walls are a composite material of polysaccharides, proteins, and other noncarbohydrate polymers. In the majority of plant tissues, the most abundant polysaccharide is cellulose, a linear polymer of glucose molecules. As the load-bearing component of the cell wall, individual cellulose chains are frequently bundled into micro and macrofibrils and are wrapped around the cell. Cellulose is synthesized by membrane-integrated and processive glycosyltransferases that polymerize UDP-activated glucose and secrete the nascent polymer through a channel formed by their own transmembrane regions. Plants express several different cellulose synthase isoforms during primary and secondary cell wall formation; however, so far, none has been functionally reconstituted in vitro for detailed biochemical analyses. Here we report the heterologous expression, purification, and functional reconstitution of Populus tremula x tremuloides CesA8 (PttCesA8), implicated in secondary cell wall formation. The recombinant enzyme polymerizes UDP-activated glucose to cellulose, as determined by enzyme degradation, permethylation glycosyl linkage analysis, electron microscopy, and mutagenesis studies. Catalytic activity is dependent on the presence of a lipid bilayer environment and divalent manganese cations. Further, electron microscopy analyses reveal that PttCesA8 produces cellulose fibers several micrometers long that occasionally are capped by globular particles, likely representing PttCesA8 complexes. Deletion of the enzyme's N-terminal RING-finger domain almost completely abolishes fiber formation but not cellulose biosynthetic activity. Our results demonstrate that reconstituted PttCesA8 is not only sufficient for cellulose biosynthesis in vitro but also suffices to bundle individual glucan chains into cellulose microfibrils.
Collapse
|
114
|
Yeats TH, Somerville CR. A dual mechanism of cellulose deficiency in shv3svl1. PLANT SIGNALING & BEHAVIOR 2016; 11:e1218108. [PMID: 27494413 PMCID: PMC5155455 DOI: 10.1080/15592324.2016.1218108] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
SHAVEN3 (SHV3) and its homolog SHAVEN3-like 1 (SVL1) encode glycosylphosphatidylinositol (GPI)-anchored proteins (GAPs) that are involved in cellulose biosynthesis and hypocotyl elongation in Arabidopsis thaliana. In a recent report, we showed that the cellulose and hypocotyl elongation defects of the shv3svl1 double mutant are greatly enhanced by exogenous sucrose in the growth medium. Further investigation of this phenomenon showed that shv3svl1 exhibits a hyperpolarized plasma membrane (PM) proton gradient that is coupled with enhanced accumulation of sucrose via the PM sucrose/proton symporter SUC1. The resulting high intracellular sucrose concentration appears to favor starch synthesis at the expense of cellulose synthesis. Here, we describe our interpretation of these results in terms of 2 potential regulators of cellulose synthesis: intracellular sucrose concentration and a putative signaling pathway that involves SHV3-like proteins.
Collapse
Affiliation(s)
- Trevor H. Yeats
- Energy Biosciences Institute and Department of Plant and
Microbial Biology, University of California,
Berkeley, Berkeley, CA, USA
- CONTACT Trevor H. Yeats , Section of Plant Biology, School of Integrative Plant Science, Cornell
University, Ithaca, NY, USA
| | - Chris R. Somerville
- Energy Biosciences Institute and Department of Plant and
Microbial Biology, University of California,
Berkeley, Berkeley, CA, USA
| |
Collapse
|
115
|
Characterization of Cellulose Synthesis in Plant Cells. ScientificWorldJournal 2016; 2016:8641373. [PMID: 27314060 PMCID: PMC4897727 DOI: 10.1155/2016/8641373] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2016] [Revised: 04/02/2016] [Accepted: 04/28/2016] [Indexed: 12/22/2022] Open
Abstract
Cellulose is the most significant structural component of plant cell wall. Cellulose, polysaccharide containing repeated unbranched β (1-4) D-glucose units, is synthesized at the plasma membrane by the cellulose synthase complex (CSC) from bacteria to plants. The CSC is involved in biosynthesis of cellulose microfibrils containing 18 cellulose synthase (CesA) proteins. Macrofibrils can be formed with side by side arrangement of microfibrils. In addition, beside CesA, various proteins like the KORRIGAN, sucrose synthase, cytoskeletal components, and COBRA-like proteins have been involved in cellulose biosynthesis. Understanding the mechanisms of cellulose biosynthesis is of great importance not only for improving wood production in economically important forest trees to mankind but also for plant development. This review article covers the current knowledge about the cellulose biosynthesis-related gene family.
Collapse
|
116
|
Structure of the Cellulose Synthase Complex of Gluconacetobacter hansenii at 23.4 Å Resolution. PLoS One 2016; 11:e0155886. [PMID: 27214134 PMCID: PMC4877109 DOI: 10.1371/journal.pone.0155886] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2016] [Accepted: 05/05/2016] [Indexed: 01/08/2023] Open
Abstract
Bacterial crystalline cellulose is used in biomedical and industrial applications, but the molecular mechanisms of synthesis are unclear. Unlike most bacteria, which make non-crystalline cellulose, Gluconacetobacter hansenii extrudes profuse amounts of crystalline cellulose. Its cellulose synthase (AcsA) exists as a complex with accessory protein AcsB, forming a 'terminal complex' (TC) that has been visualized by freeze-fracture TEM at the base of ribbons of crystalline cellulose. The catalytic AcsAB complex is embedded in the cytoplasmic membrane. The C-terminal portion of AcsC is predicted to form a translocation channel in the outer membrane, with the rest of AcsC possibly interacting with AcsD in the periplasm. It is thus believed that synthesis from an organized array of TCs coordinated with extrusion by AcsC and AcsD enable this bacterium to make crystalline cellulose. The only structural data that exist for this system are the above mentioned freeze-fracture TEM images, fluorescence microscopy images revealing that TCs align in a row, a crystal structure of AcsD bound to cellopentaose, and a crystal structure of PilZ domain of AcsA. Here we advance our understanding of the structural basis for crystalline cellulose production by bacterial cellulose synthase by determining a negative stain structure resolved to 23.4 Å for highly purified AcsAB complex that catalyzed incorporation of UDP-glucose into β-1,4-glucan chains, and responded to the presence of allosteric activator cyclic diguanylate. Although the AcsAB complex was functional in vitro, the synthesized cellulose was not visible in TEM. The negative stain structure revealed that AcsAB is very similar to that of the BcsAB synthase of Rhodobacter sphaeroides, a non-crystalline cellulose producing bacterium. The results indicate that the crystalline cellulose producing and non-crystalline cellulose producing bacteria share conserved catalytic and membrane translocation components, and support the hypothesis that it is the extrusion mechanism and order in linearly arrayed TCs that enables production of crystalline cellulose.
Collapse
|
117
|
Abstract
Escherichia coli is one of the world's best-characterized organisms, because it has been extensively studied for over a century. However, most of this work has focused on E. coli grown under laboratory conditions that do not faithfully simulate its natural environments. Therefore, the historical perspectives on E. coli physiology and life cycle are somewhat skewed toward experimental systems that feature E. coli growing logarithmically in a test tube. Typically a commensal bacterium, E. coli resides in the lower intestines of a slew of animals. Outside of the lower intestine, E. coli can adapt and survive in a very different set of environmental conditions. Biofilm formation allows E. coli to survive, and even thrive, in environments that do not support the growth of planktonic populations. E. coli can form biofilms virtually everywhere: in the bladder during a urinary tract infection, on in-dwelling medical devices, and outside of the host on plants and in the soil. The E. coli extracellular matrix (ECM), primarily composed of the protein polymer named curli and the polysaccharide cellulose, promotes adherence to organic and inorganic surfaces and resistance to desiccation, the host immune system, and other antimicrobials. The pathways that govern E. coli biofilm formation, cellulose production, and curli biogenesis will be discussed in this article, which concludes with insights into the future of E. coli biofilm research and potential therapies.
Collapse
|
118
|
Meng X, Zhang L, Hou B, Liu X, Li S. Oxygen-Free Condition Inhibited Biofilm Formation in Extraintestinal Pathogenic Escherichia coli Strain PPECC42 Through Preventing Curli Production. Curr Microbiol 2016; 73:153-8. [PMID: 27094999 DOI: 10.1007/s00284-016-1037-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2015] [Accepted: 03/01/2016] [Indexed: 10/21/2022]
Abstract
Extraintestinal pathogenic Escherichia coli (ExPEC) is an important zoonotic and foodborne pathogen. Biofilms are specially structured communities for bacteria to survive in different hostile environments and can protect the bacteria from eradication by the host and external factors. In this study, we found that oxygen is definitely required for biofilm formation in ExPEC strain PPECC42. Aerobically growing ExPEC showed a bdar (brown, dry, and rough) morphotype, whereas anaerobically growing ExPEC showed a saw (smooth and white) morphotype. Under anaerobic condition, curli fimbriae did not accumulate and the expression levels of curli biosynthesis-related genes including csgB, csgD, and rpoS decreased significantly; in contrast, the expression level of h-ns, of which the encoding protein is a repressor for csgD transcription, increased significantly. Taken together, the results suggested that oxygen-free condition limited ExPEC strain PPECC42 biofilm formation mainly through preventing curli accumulation by affecting the transcriptional levels of curli biosynthesis-related genes.
Collapse
Affiliation(s)
- Xianrong Meng
- State Key Lab of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Shizishan Street No 1, Wuhan, 430070, People's Republic of China
| | - Liyuan Zhang
- State Key Lab of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Shizishan Street No 1, Wuhan, 430070, People's Republic of China
| | - Bo Hou
- State Key Lab of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Shizishan Street No 1, Wuhan, 430070, People's Republic of China
| | - Xueling Liu
- State Key Lab of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Shizishan Street No 1, Wuhan, 430070, People's Republic of China
| | - Shaowen Li
- State Key Lab of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Shizishan Street No 1, Wuhan, 430070, People's Republic of China.
| |
Collapse
|
119
|
Morgan JL, McNamara JT, Fischer M, Rich J, Chen HM, Withers SG, Zimmer J. Observing cellulose biosynthesis and membrane translocation in crystallo. Nature 2016; 531:329-34. [PMID: 26958837 PMCID: PMC4843519 DOI: 10.1038/nature16966] [Citation(s) in RCA: 105] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Accepted: 01/05/2016] [Indexed: 12/18/2022]
Abstract
Many biopolymers, including polysaccharides, must be translocated across at least one membrane to reach their site of biological function. Cellulose is a linear glucose polymer synthesized and secreted by a membrane-integrated cellulose synthase. Here, in crystallo enzymology with the catalytically active bacterial cellulose synthase BcsA-BcsB complex reveals structural snapshots of a complete cellulose biosynthesis cycle, from substrate binding to polymer translocation. Substrate- and product-bound structures of BcsA provide the basis for substrate recognition and demonstrate the stepwise elongation of cellulose. Furthermore, the structural snapshots show that BcsA translocates cellulose via a ratcheting mechanism involving a 'finger helix' that contacts the polymer's terminal glucose. Cooperating with BcsA's gating loop, the finger helix moves 'up' and 'down' in response to substrate binding and polymer elongation, respectively, thereby pushing the elongated polymer into BcsA's transmembrane channel. This mechanism is validated experimentally by tethering BcsA's finger helix, which inhibits polymer translocation but not elongation.
Collapse
Affiliation(s)
- Jacob L.W. Morgan
- University of Virginia School of Medicine, Center for Membrane Biology, Molecular Physiology and Biological Physics, 480 Ray C. Hunt Dr., Charlottesville, VA 22908, USA
| | - Joshua T. McNamara
- University of Virginia School of Medicine, Center for Membrane Biology, Molecular Physiology and Biological Physics, 480 Ray C. Hunt Dr., Charlottesville, VA 22908, USA
| | - Michael Fischer
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, B.C., Canada V6T 1Z1
| | - Jamie Rich
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, B.C., Canada V6T 1Z1
| | - Hong-Ming Chen
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, B.C., Canada V6T 1Z1
| | - Stephen G. Withers
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, B.C., Canada V6T 1Z1
| | - Jochen Zimmer
- University of Virginia School of Medicine, Center for Membrane Biology, Molecular Physiology and Biological Physics, 480 Ray C. Hunt Dr., Charlottesville, VA 22908, USA
| |
Collapse
|
120
|
Ji K, Wang W, Zeng B, Chen S, Zhao Q, Chen Y, Li G, Ma T. Bacterial cellulose synthesis mechanism of facultative anaerobe Enterobacter sp. FY-07. Sci Rep 2016; 6:21863. [PMID: 26911736 PMCID: PMC4766428 DOI: 10.1038/srep21863] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Accepted: 02/02/2016] [Indexed: 12/26/2022] Open
Abstract
Enterobacter sp. FY-07 can produce bacterial cellulose (BC) under aerobic and anaerobic conditions. Three potential BC synthesis gene clusters (bcsI, bcsII and bcsIII) of Enterobacter sp. FY-07 have been predicted using genome sequencing and comparative genome analysis, in which bcsIII was confirmed as the main contributor to BC synthesis by gene knockout and functional reconstitution methods. Protein homology, gene arrangement and gene constitution analysis indicated that bcsIII had high identity to the bcsI operon of Enterobacter sp. 638; however, its arrangement and composition were same as those of BC synthesizing operon of G. xylinum ATCC53582 except for the flanking sequences. According to the BC biosynthesizing process, oxygen is not directly involved in the reactions of BC synthesis, however, energy is required to activate intermediate metabolites and synthesize the activator, c-di-GMP. Comparative transcriptome and metabolite quantitative analysis demonstrated that under anaerobic conditions genes involved in the TCA cycle were downregulated, however, genes in the nitrate reduction and gluconeogenesis pathways were upregulated, especially, genes in three pyruvate metabolism pathways. These results suggested that Enterobacter sp. FY-07 could produce energy efficiently under anaerobic conditions to meet the requirement of BC biosynthesis.
Collapse
Affiliation(s)
- Kaihua Ji
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| | - Wei Wang
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, TEDA Institute of Biology Sciences and Biotechnology, Nankai University, 23 Hongda Street, TEDA, Tianjin 300457, PR China.,Tianjin Key Laboratory of Microbial Functional Genomics, TEDA, Tianjin 300457, PR China
| | - Bing Zeng
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| | - Sibin Chen
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| | - Qianqian Zhao
- Quality Control Department, Tsingtao Brewery Second Factory, Tsingtao Brewery CO., LTD, Qingdao 266000, PR China
| | - Yueqing Chen
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| | - Guoqiang Li
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| | - Ting Ma
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| |
Collapse
|
121
|
Basu S, Omadjela O, Gaddes D, Tadigadapa S, Zimmer J, Catchmark JM. Cellulose Microfibril Formation by Surface-Tethered Cellulose Synthase Enzymes. ACS NANO 2016; 10:1896-907. [PMID: 26799780 DOI: 10.1021/acsnano.5b05648] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Cellulose microfibrils are pseudocrystalline arrays of cellulose chains that are synthesized by cellulose synthases. The enzymes are organized into large membrane-embedded complexes in which each enzyme likely synthesizes and secretes a β-(1→4) glucan. The relationship between the organization of the enzymes in these complexes and cellulose crystallization has not been explored. To better understand this relationship, we used atomic force microscopy to visualize cellulose microfibril formation from nickel-film-immobilized bacterial cellulose synthase enzymes (BcsA-Bs), which in standard solution only form amorphous cellulose from monomeric BcsA-B complexes. Fourier transform infrared spectroscopy and X-ray diffraction techniques show that surface-tethered BcsA-Bs synthesize highly crystalline cellulose II in the presence of UDP-Glc, the allosteric activator cyclic-di-GMP, as well as magnesium. The cellulose II cross section/diameter and the crystal size and crystallinity depend on the surface density of tethered enzymes as well as the overall concentration of substrates. Our results provide the correlation between cellulose microfibril formation and the spatial organization of cellulose synthases.
Collapse
Affiliation(s)
- Snehasish Basu
- Department of Agricultural and Biological Engineering, Pennsylvania State University , University Park, Pennsylvania 16802, United States
| | - Okako Omadjela
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia , Charlottesville, Virginia 22908, United States
| | - David Gaddes
- Department of Electrical Engineering, Pennsylvania State University , University Park, Pennsylvania 16802, United States
| | - Srinivas Tadigadapa
- Department of Electrical Engineering, Pennsylvania State University , University Park, Pennsylvania 16802, United States
| | - Jochen Zimmer
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia , Charlottesville, Virginia 22908, United States
| | - Jeffrey M Catchmark
- Department of Agricultural and Biological Engineering, Pennsylvania State University , University Park, Pennsylvania 16802, United States
| |
Collapse
|
122
|
Knott BC, Crowley MF, Himmel ME, Zimmer J, Beckham GT. Simulations of cellulose translocation in the bacterial cellulose synthase suggest a regulatory mechanism for the dimeric structure of cellulose. Chem Sci 2016; 7:3108-3116. [PMID: 27143998 PMCID: PMC4849487 DOI: 10.1039/c5sc04558d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
In addition to suggesting a mechanism for regulating cellulose structure, molecular simulations indicate translocation is not rate-limiting for cellulose biosynthesis.
The processive cycle of the bacterial cellulose synthase (Bcs) includes the addition of a single glucose moiety to the end of a growing cellulose chain followed by the translocation of the nascent chain across the plasma membrane. The mechanism of this translocation and its precise location within the processive cycle are not well understood. In particular, the molecular details of how a polymer (cellulose) whose basic structural unit is a dimer (cellobiose) can be constructed by adding one monomer (glucose) at a time are yet to be elucidated. Here, we have utilized molecular dynamics simulations and free energy calculations to the shed light on these questions. We find that translocation forward by one glucose unit is quite favorable energetically, giving a free energy stabilization of greater than 10 kcal mol–1. In addition, there is only a small barrier to translocation, implying that translocation is not rate limiting within the Bcs processive cycle (given experimental rates for cellulose synthesis in vitro). Perhaps most significantly, our results also indicate that steric constraints at the transmembrane tunnel entrance regulate the dimeric structure of cellulose. Namely, when a glucose molecule is added to the cellulose chain in the same orientation as the acceptor glucose, the terminal glucose freely rotates upon forward motion, thus suggesting a regulatory mechanism for the dimeric structure of cellulose. We characterize both the conserved and non-conserved enzyme–polysaccharide interactions that drive translocation, and find that 20 of the 25 residues that strongly interact with the translocating cellulose chain in the simulations are well conserved, mostly with polar or aromatic side chains. Our results also allow for a dynamical analysis of the role of the so-called ‘finger helix’ in cellulose translocation that has been observed structurally. Taken together, these findings aid in the elucidation of the translocation steps of the Bcs processive cycle and may be widely relevant to polysaccharide synthesizing or degrading enzymes that couple catalysis with chain translocation.
Collapse
Affiliation(s)
- Brandon C Knott
- National Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden CO 80401, USA
| | - Michael F Crowley
- Biosciences Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden CO 80401, USA
| | - Michael E Himmel
- Biosciences Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden CO 80401, USA
| | - Jochen Zimmer
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA 22980
| | - Gregg T Beckham
- National Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden CO 80401, USA
| |
Collapse
|
123
|
Ojima Y, Takeda S, Taya M. Floc Formation of Ethanol Producing Escherichia coli KO11 Cells and Its Application to Repeated Batch Operation. JOURNAL OF CHEMICAL ENGINEERING OF JAPAN 2016. [DOI: 10.1252/jcej.16we040] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Yoshihiro Ojima
- Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University
| | - Shotaro Takeda
- Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University
| | - Masahito Taya
- Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University
| |
Collapse
|
124
|
Jones DM, Murray CM, Ketelaar KJ, Thomas JJ, Villalobos JA, Wallace IS. The Emerging Role of Protein Phosphorylation as a Critical Regulatory Mechanism Controlling Cellulose Biosynthesis. FRONTIERS IN PLANT SCIENCE 2016; 7:684. [PMID: 27252710 PMCID: PMC4877384 DOI: 10.3389/fpls.2016.00684] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2016] [Accepted: 05/04/2016] [Indexed: 05/02/2023]
Abstract
Plant cell walls are extracellular matrices that surround plant cells and critically influence basic cellular processes, such as cell division and expansion. Cellulose is a major constituent of plant cell walls, and this paracrystalline polysaccharide is synthesized at the plasma membrane by a large protein complex known as the cellulose synthase complex (CSC). Recent efforts have identified numerous protein components of the CSC, but relatively little is known about regulation of cellulose biosynthesis. Numerous phosphoproteomic surveys have identified phosphorylation events in CSC associated proteins, suggesting that protein phosphorylation may represent an important regulatory control of CSC activity. In this review, we discuss the composition and dynamics of the CSC in vivo, the catalog of CSC phosphorylation sites that have been identified, the function of experimentally examined phosphorylation events, and potential kinases responsible for these phosphorylation events. Additionally, we discuss future directions in cellulose synthase kinase identification and functional analyses of CSC phosphorylation sites.
Collapse
Affiliation(s)
- Danielle M. Jones
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, RenoNV, USA
| | - Christian M. Murray
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, RenoNV, USA
| | - KassaDee J. Ketelaar
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, RenoNV, USA
| | - Joseph J. Thomas
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, RenoNV, USA
| | - Jose A. Villalobos
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, RenoNV, USA
| | - Ian S. Wallace
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, RenoNV, USA
- Department of Chemistry, University of Nevada, Reno, RenoNV, USA
- *Correspondence: Ian S. Wallace,
| |
Collapse
|
125
|
Vandavasi VG, Putnam DK, Zhang Q, Petridis L, Heller WT, Nixon BT, Haigler CH, Kalluri U, Coates L, Langan P, Smith JC, Meiler J, O'Neill H. A Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex: Evidence for CESA Trimers. PLANT PHYSIOLOGY 2016; 170:123-35. [PMID: 26556795 PMCID: PMC4704586 DOI: 10.1104/pp.15.01356] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2015] [Accepted: 11/05/2015] [Indexed: 05/18/2023]
Abstract
A cellulose synthesis complex with a "rosette" shape is responsible for synthesis of cellulose chains and their assembly into microfibrils within the cell walls of land plants and their charophyte algal progenitors. The number of cellulose synthase proteins in this large multisubunit transmembrane protein complex and the number of cellulose chains in a microfibril have been debated for many years. This work reports a low resolution structure of the catalytic domain of CESA1 from Arabidopsis (Arabidopsis thaliana; AtCESA1CatD) determined by small-angle scattering techniques and provides the first experimental evidence for the self-assembly of CESA into a stable trimer in solution. The catalytic domain was overexpressed in Escherichia coli, and using a two-step procedure, it was possible to isolate monomeric and trimeric forms of AtCESA1CatD. The conformation of monomeric and trimeric AtCESA1CatD proteins were studied using small-angle neutron scattering and small-angle x-ray scattering. A series of AtCESA1CatD trimer computational models were compared with the small-angle x-ray scattering trimer profile to explore the possible arrangement of the monomers in the trimers. Several candidate trimers were identified with monomers oriented such that the newly synthesized cellulose chains project toward the cell membrane. In these models, the class-specific region is found at the periphery of the complex, and the plant-conserved region forms the base of the trimer. This study strongly supports the "hexamer of trimers" model for the rosette cellulose synthesis complex that synthesizes an 18-chain cellulose microfibril as its fundamental product.
Collapse
Affiliation(s)
- Venu Gopal Vandavasi
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Daniel K Putnam
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Qiu Zhang
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Loukas Petridis
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - William T Heller
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - B Tracy Nixon
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Candace H Haigler
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Udaya Kalluri
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Leighton Coates
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Paul Langan
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Jeremy C Smith
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Jens Meiler
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| | - Hugh O'Neill
- Biology and Soft Matter Division (V.G.V., Q.Z., W.T.H., L.C., H.O.), BioSciences Division (L.P., U.K.), Center for Molecular Biophysics (L.P., J.C.S.), and Neutron Sciences Directorate (P.L.), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;Department of Biomedical Informatics (D.K.P., J.M.) and Department of Chemistry (J.M.), Vanderbilt University, Nashville, Tennessee 37232;Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania 16802 (B.T.N.);Department of Crop Science and Department of Plant and Microbial Biology, North Carolina State University, North Carolina 27695 (C.H.H.); andDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996 (J.C.S., H.O.)
| |
Collapse
|
126
|
Penttilä PA, Sugiyama J, Imai T. Effects of reaction conditions on cellulose structures synthesized in vitro by bacterial cellulose synthases. Carbohydr Polym 2016; 136:656-66. [DOI: 10.1016/j.carbpol.2015.09.082] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2015] [Revised: 08/07/2015] [Accepted: 09/23/2015] [Indexed: 01/04/2023]
|
127
|
Augimeri RV, Strap JL. The Phytohormone Ethylene Enhances Cellulose Production, Regulates CRP/FNRKx Transcription and Causes Differential Gene Expression within the Bacterial Cellulose Synthesis Operon of Komagataeibacter (Gluconacetobacter) xylinus ATCC 53582. Front Microbiol 2015; 6:1459. [PMID: 26733991 PMCID: PMC4686702 DOI: 10.3389/fmicb.2015.01459] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Accepted: 12/04/2015] [Indexed: 01/22/2023] Open
Abstract
Komagataeibacter (formerly Gluconacetobacter) xylinus ATCC 53582 is a plant-associated model organism for bacterial cellulose (BC) biosynthesis. This bacterium inhabits the carposphere where it interacts with fruit through the bi-directional transfer of phytohormones. The majority of research regarding K. xylinus has been focused on identifying and characterizing structural and regulatory factors that control BC biosynthesis, but its ecophysiology has been generally overlooked. Ethylene is a phytohormone that regulates plant development in a variety of ways, but is most commonly known for its positive role on fruit ripening. In this study, we utilized ethephon (2-chloroethylphosphonic acid) to produce in situ ethylene to investigate the effects of this phytohormone on BC production and the expression of genes known to be involved in K. xylinus BC biosynthesis (bcsA, bcsB, bcsC, bcsD, cmcAx, ccpAx and bglAx). Using pellicle assays and reverse transcription quantitative polymerase chain reaction (RT-qPCR), we demonstrate that ethephon-derived ethylene enhances BC directly in K. xylinus by up-regulating the expression of bcsA and bcsB, and indirectly though the up-regulation of cmcAx, ccpAx, and bglAx. We confirm that IAA directly decreases BC biosynthesis by showing that IAA down-regulates bcsA expression. Similarly, we confirm that ABA indirectly influences BC biosynthesis by showing it does not affect the expression of bcs operon genes. In addition, we are the first to report the ethylene and indole-3-acetic acid (IAA) induced differential expression of genes within the bacterial cellulose synthesis (bcs) operon. Using bioinformatics we have identified a novel phytohormone-regulated CRP/FNRKx transcription factor and provide evidence that it influences BC biosynthesis in K. xylinus. Lastly, utilizing current and previous data, we propose a model for the phytohormone-mediated fruit-bacteria interactions that K. xylinus experiences in nature.
Collapse
Affiliation(s)
| | - Janice L. Strap
- Molecular Microbial Biochemistry Laboratory, Faculty of Science, University of Ontario Institute of Technology, OshawaON, Canada
| |
Collapse
|
128
|
Augimeri RV, Varley AJ, Strap JL. Establishing a Role for Bacterial Cellulose in Environmental Interactions: Lessons Learned from Diverse Biofilm-Producing Proteobacteria. Front Microbiol 2015; 6:1282. [PMID: 26635751 PMCID: PMC4646962 DOI: 10.3389/fmicb.2015.01282] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Accepted: 10/31/2015] [Indexed: 01/21/2023] Open
Abstract
Bacterial cellulose (BC) serves as a molecular glue to facilitate intra- and inter-domain interactions in nature. Biosynthesis of BC-containing biofilms occurs in a variety of Proteobacteria that inhabit diverse ecological niches. The enzymatic and regulatory systems responsible for the polymerization, exportation, and regulation of BC are equally as diverse. Though the magnitude and environmental consequences of BC production are species-specific, the common role of BC-containing biofilms is to establish close contact with a preferred host to facilitate efficient host-bacteria interactions. Universally, BC aids in attachment, adherence, and subsequent colonization of a substrate. Bi-directional interactions influence host physiology, bacterial physiology, and regulation of BC biosynthesis, primarily through modulation of intracellular bis-(3'→5')-cyclic diguanylate (c-di-GMP) levels. Depending on the circumstance, BC producers exhibit a pathogenic or symbiotic relationship with plant, animal, or fungal hosts. Rhizobiaceae species colonize plant roots, Pseudomonadaceae inhabit the phyllosphere, Acetobacteriaceae associate with sugar-loving insects and inhabit the carposphere, Enterobacteriaceae use fresh produce as vehicles to infect animal hosts, and Vibrionaceae, particularly Aliivibrio fischeri, colonize the light organ of squid. This review will highlight the diversity of the biosynthesis and regulation of BC in nature by discussing various examples of Proteobacteria that use BC-containing biofilms to facilitate host-bacteria interactions. Through discussion of current data we will establish new directions for the elucidation of BC biosynthesis, its regulation and its ecophysiological roles.
Collapse
Affiliation(s)
| | | | - Janice L. Strap
- Molecular Microbial Biochemistry Laboratory, Faculty of Science, University of Ontario Institute of TechnologyOshawa, ON, Canada
| |
Collapse
|
129
|
Erbakan M, Curtis BS, Nixon BT, Kumar M, Curtis WR. Advancing Rhodobacter sphaeroides as a platform for expression of functional membrane proteins. Protein Expr Purif 2015; 115:109-17. [DOI: 10.1016/j.pep.2015.05.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2015] [Revised: 05/15/2015] [Accepted: 05/17/2015] [Indexed: 01/20/2023]
|
130
|
Bi Y, Hubbard C, Purushotham P, Zimmer J. Insights into the structure and function of membrane-integrated processive glycosyltransferases. Curr Opin Struct Biol 2015; 34:78-86. [PMID: 26342143 PMCID: PMC4684724 DOI: 10.1016/j.sbi.2015.07.008] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Revised: 07/17/2015] [Accepted: 07/20/2015] [Indexed: 12/23/2022]
Abstract
Complex carbohydrates perform essential functions in life, including energy storage, cell signaling, protein targeting, quality control, as well as supporting cell structure and stability. Extracellular polysaccharides (EPS) represent mainly structural polymers and are found in essentially all kingdoms of life. For example, EPS are important biofilm and capsule components in bacteria, represent major constituents in cell walls of fungi, algae, arthropods and plants, and modulate the extracellular matrix in vertebrates. Different mechanisms evolved by which EPS are synthesized. Here, we review the structures and functions of membrane-integrated processive glycosyltransferases (GTs) implicated in the synthesis and secretion of chitin, alginate, hyaluronan and poly-N-acetylglucosamine (PNAG).
Collapse
Affiliation(s)
- Yunchen Bi
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, 480 Ray C. Hunt Dr., Charlottesville, VA 22908, United States
| | - Caitlin Hubbard
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, 480 Ray C. Hunt Dr., Charlottesville, VA 22908, United States
| | - Pallinti Purushotham
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, 480 Ray C. Hunt Dr., Charlottesville, VA 22908, United States
| | - Jochen Zimmer
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, 480 Ray C. Hunt Dr., Charlottesville, VA 22908, United States.
| |
Collapse
|
131
|
Baker P, Whitfield GB, Hill PJ, Little DJ, Pestrak MJ, Robinson H, Wozniak DJ, Howell PL. Characterization of the Pseudomonas aeruginosa Glycoside Hydrolase PslG Reveals That Its Levels Are Critical for Psl Polysaccharide Biosynthesis and Biofilm Formation. J Biol Chem 2015; 290:28374-28387. [PMID: 26424791 DOI: 10.1074/jbc.m115.674929] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Indexed: 01/04/2023] Open
Abstract
A key component of colonization, biofilm formation, and protection of the opportunistic human pathogen Pseudomonas aeruginosa is the biosynthesis of the exopolysaccharide Psl. Composed of a pentameric repeating unit of mannose, glucose, and rhamnose, the biosynthesis of Psl is proposed to occur via a Wzx/Wzy-dependent mechanism. Previous genetic studies have shown that the putative glycoside hydrolase PslG is essential for Psl biosynthesis. To understand the function of this protein, the apo-structure of the periplasmic domain of PslG (PslG(31-442)) and its complex with mannose were determined to 2.0 and 1.9 Å resolution, respectively. Despite a domain architecture and positioning of catalytic residues similar to those of other family 39 glycoside hydrolases, PslG(31-442) exhibits a unique 32-Å-long active site groove that is distinct from other structurally characterized family members. PslG formed a complex with two mannose monosaccharides in this groove, consistent with binding data obtained from intrinsic tryptophan fluorescence. PslG was able to catalyze the hydrolysis of surface-associated Psl, and this activity was abolished in a E165Q/E276Q double catalytic variant. Surprisingly, P. aeruginosa variants with these chromosomal mutations as well as a pslG deletion mutant were still capable of forming Psl biofilms. However, overexpression of PslG in a pslG deletion background impaired biofilm formation and resulted in less surface-associated Psl, suggesting that regulation of this enzyme is important during polysaccharide biosynthesis.
Collapse
Affiliation(s)
- Perrin Baker
- Program in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada
| | - Gregory B Whitfield
- Program in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada; Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
| | - Preston J Hill
- Division of Infectious Disease, Center for Microbial Interface Biology, Ohio State University, Columbus, Ohio 43210
| | - Dustin J Little
- Program in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada; Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
| | - Matthew J Pestrak
- Division of Infectious Disease, Center for Microbial Interface Biology, Ohio State University, Columbus, Ohio 43210
| | - Howard Robinson
- Photon Sciences Division, Brookhaven National Laboratory, Upton, New York 11973-5000
| | - Daniel J Wozniak
- Division of Infectious Disease, Center for Microbial Interface Biology, Ohio State University, Columbus, Ohio 43210.
| | - P Lynne Howell
- Program in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada; Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada
| |
Collapse
|
132
|
AcsA-AcsB: The core of the cellulose synthase complex from Gluconacetobacter hansenii ATCC23769. Enzyme Microb Technol 2015; 82:58-65. [PMID: 26672449 DOI: 10.1016/j.enzmictec.2015.08.015] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2015] [Revised: 08/19/2015] [Accepted: 08/21/2015] [Indexed: 01/14/2023]
Abstract
The gram-negative bacterium, Gluconacetobacter hansenii, produces cellulose of exceptionally high crystallinity in comparison to the cellulose of higher plants. This bacterial cellulose is synthesized and extruded into the extracellular medium by the cellulose synthase complex (CSC). The catalytic component of this complex is encoded by the gene AcsAB. However, several other genes are known to encode proteins critical to cellulose synthesis and are likely components of the bacterial CSC. We have purified an active heterodimer AcsA-AcsB from G. hansenii ATCC23769 to homogeneity by two different methods. With the purified protein, we have determined how it is post-translationally processed, forming the active heterodimer AcsA-AcsB. Additionally, we have performed steady-state kinetic studies on the AcsA-AcsB complex. Finally through mutagenesis studies, we have explored the roles of the postulated CSC proteins AcsC, AcsD, and CcpAx.
Collapse
|
133
|
Adherent-Invasive Escherichia coli Production of Cellulose Influences Iron-Induced Bacterial Aggregation, Phagocytosis, and Induction of Colitis. Infect Immun 2015. [PMID: 26216423 DOI: 10.1128/iai.00904-15] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Adherent-invasive Escherichia coli (AIEC), a functionally distinct subset of resident intestinal E. coli associated with Crohn's disease, is characterized by enhanced epithelial adhesion and invasion, survival within macrophages, and biofilm formation. Environmental factors, such as iron, modulate E. coli production of extracellular structures, which in turn influence the formation of multicellular communities, such as biofilms, and bacterial interactions with host cells. However, the physiological and functional responses of AIEC to variable iron availability have not been thoroughly investigated. We therefore characterized the impact of iron on the physiology of AIEC strain NC101 and subsequent interactions with macrophages. Iron promoted the cellulose-dependent aggregation of NC101. Bacterial cells recovered from the aggregates were more susceptible to phagocytosis than planktonic cells, which corresponded with the decreased macrophage production of the proinflammatory cytokine interleukin-12 (IL-12) p40. Prevention of aggregate formation through the disruption of cellulose production reduced the phagocytosis of iron-exposed NC101. In contrast, under iron-limiting conditions, where NC101 aggregation is not induced, the disruption of cellulose production enhanced NC101 phagocytosis and decreased macrophage secretion of IL-12 p40. Finally, abrogation of cellulose production reduced NC101 induction of colitis when NC101 was monoassociated in inflammation-prone Il10(-/-) mice. Taken together, our results introduce cellulose as a novel physiological factor that impacts host-microbe-environment interactions and alters the proinflammatory potential of AIEC.
Collapse
|
134
|
Liang ZX. The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites. Nat Prod Rep 2015; 32:663-83. [PMID: 25666534 DOI: 10.1039/c4np00086b] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The cyclic dinucleotide c-di-GMP has emerged in the last decade as a prevalent intracellular messenger that orchestrates the transition between the motile and sessile lifestyles of many bacterial species. The motile-to-sessile transition is often associated with the formation of extracellular matrix-encased biofilm, an organized community of bacterial cells that often contributes to antibiotic resistance and host-pathogen interaction. It is increasingly clear that c-di-GMP controls motility, biofilm formation and bacterial pathogenicity partially through regulating the production of exopolysaccharides (EPS) and small-molecule secondary metabolites. This review summarizes our current understanding of the regulation of EPS biosynthesis by c-di-GMP in a diversity of bacterial species and highlights the emerging role of c-di-GMP in the biosynthesis of small-molecule secondary metabolites.
Collapse
Affiliation(s)
- Zhao-Xun Liang
- Division of Structural Biology & Biochemistry, School of Biological Sciences, Nanyang Technological University, Singapore 637551.
| |
Collapse
|
135
|
Simm R, Ahmad I, Rhen M, Le Guyon S, Römling U. Regulation of biofilm formation in Salmonella enterica serovar Typhimurium. Future Microbiol 2015; 9:1261-82. [PMID: 25437188 DOI: 10.2217/fmb.14.88] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
In animals, plants and the environment, Salmonella enterica serovar Typhimurium forms the red dry and rough (rdar) biofilm characterized by extracellular matrix components curli and cellulose. With complex expression control by at least ten transcription factors, the bistably expressed orphan response regulator CsgD directs rdar morphotype development. CsgD expression is an integral part of the Hfq regulon and the complex cyclic diguanosine monophosphate signaling network partially controlled by the global RNA-binding protein CsrA. Cell wall turnover and the periplasmic redox status regulate csgD expression on a post-transcriptional level by unknown mechanisms. Furthermore, phosphorylation of CsgD is a potential inactivation and degradation signal in biofilm dissolution. Including complex incoherent feed-forward loops, regulation of biofilm formation versus motility and virulence is of recognized complexity.
Collapse
Affiliation(s)
- Roger Simm
- Department of Biochemistry, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Montebello, Oslo, Norway
| | | | | | | | | |
Collapse
|
136
|
Scavuzzo-Duggan TR, Chaves AM, Roberts AW. A complementation assay for in vivo protein structure/function analysis in Physcomitrella patens (Funariaceae). APPLICATIONS IN PLANT SCIENCES 2015; 3:apps1500023. [PMID: 26191463 PMCID: PMC4504723 DOI: 10.3732/apps.1500023] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2015] [Accepted: 06/16/2015] [Indexed: 05/11/2023]
Abstract
PREMISE OF THE STUDY A method for rapid in vivo functional analysis of engineered proteins was developed using Physcomitrella patens. METHODS AND RESULTS A complementation assay was designed for testing structure/function relationships in cellulose synthase (CESA) proteins. The components of the assay include (1) construction of test vectors that drive expression of epitope-tagged PpCESA5 carrying engineered mutations, (2) transformation of a ppcesa5 knockout line that fails to produce gametophores with test and control vectors, (3) scoring the stable transformants for gametophore production, (4) statistical analysis comparing complementation rates for test vectors to positive and negative control vectors, and (5) analysis of transgenic protein expression by Western blotting. The assay distinguished mutations that generate fully functional, nonfunctional, and partially functional proteins. CONCLUSIONS Compared with existing methods for in vivo testing of protein function, this complementation assay provides a rapid method for investigating protein structure/function relationships in plants.
Collapse
Affiliation(s)
- Tess R. Scavuzzo-Duggan
- Department of Biological Sciences, University of Rhode Island, 120 Flagg Road, Kingston, Rhode Island 02881 USA
| | - Arielle M. Chaves
- Department of Biological Sciences, University of Rhode Island, 120 Flagg Road, Kingston, Rhode Island 02881 USA
| | - Alison W. Roberts
- Department of Biological Sciences, University of Rhode Island, 120 Flagg Road, Kingston, Rhode Island 02881 USA
- Author for correspondence:
| |
Collapse
|
137
|
In vitro synthesis of cellulose microfibrils by a membrane protein from protoplasts of the non-vascular plant Physcomitrella patens. Biochem J 2015; 470:195-205. [PMID: 26348908 DOI: 10.1042/bj20141391] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2014] [Accepted: 06/30/2015] [Indexed: 12/29/2022]
Abstract
Plant cellulose synthases (CesAs) form a family of membrane proteins that are associated with hexagonal structures in the plasma membrane called CesA complexes (CSCs). It has been difficult to purify plant CesA proteins for biochemical and structural studies. We describe CesA activity in a membrane protein preparation isolated from protoplasts of Physcomitrella patens overexpressing haemagglutinin (HA)-tagged PpCesA5. Incubating the membrane preparation with UDP-glucose predominantly produced cellulose. Negative-stain EM revealed microfibrils. Cellulase bound to and degraded these microfibrils. Vibrational sum frequency generation (SFG) spectroscopic analysis detected the presence of crystalline cellulose in the microfibrils. Putative CesA proteins were frequently observed attached to the microfibril ends. Combined cross-linking and gradient centrifugation showed bundles of cellulose microfibrils with larger particle aggregates, possibly CSCs. These results suggest that P. patens is a useful model system for biochemical and structural characterization of plant CSCs and their components.
Collapse
|
138
|
Flocculation of Escherichia coli Cells in Association with Enhanced Production of Outer Membrane Vesicles. Appl Environ Microbiol 2015; 81:5900-6. [PMID: 26092467 DOI: 10.1128/aem.01011-15] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2015] [Accepted: 06/16/2015] [Indexed: 01/02/2023] Open
Abstract
Microbial flocculation is a phenomenon of aggregation of dispersed bacterial cells in the form of flocs or flakes. In this study, the mechanism of spontaneous flocculation of Escherichia coli cells by overexpression of the bcsB gene was investigated. The flocculation induced by overexpression of bcsB was consistent among the various E. coli strains examined, including the K-12, B, and O strains, with flocs that resembled paper scraps in structure being about 1 to 2 mm. The distribution of green fluorescent protein-labeled E. coli cells within the floc structure was investigated by three-dimensional confocal laser scanning microscopy. Flocs were sensitive to proteinase K, indicating that the main component of the flocs was proteinous. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and nano-liquid chromatography tandem mass spectrometry analyses of the flocs strongly suggested the involvement of outer membrane vesicles (OMVs) in E. coli flocculation. The involvement of OMVs in flocculation was supported by transmission electron microscopy observation of flocs. Furthermore, bcsB-induced E. coli flocculation was greatly suppressed in strains with hypovesiculation phenotypes (ΔdsbA and ΔdsbB strains). Thus, our results demonstrate the strong correlation between spontaneous flocculation and enhanced OMV production of E. coli cells.
Collapse
|
139
|
Römling U, Galperin MY. Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions. Trends Microbiol 2015; 23:545-57. [PMID: 26077867 DOI: 10.1016/j.tim.2015.05.005] [Citation(s) in RCA: 307] [Impact Index Per Article: 34.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Revised: 05/05/2015] [Accepted: 05/18/2015] [Indexed: 12/30/2022]
Abstract
Recent studies of bacterial cellulose biosynthesis, including structural characterization of a functional cellulose synthase complex, provided the first mechanistic insight into this fascinating process. In most studied bacteria, just two subunits, BcsA and BcsB, are necessary and sufficient for the formation of the polysaccharide chain in vitro. Other subunits - which differ among various taxa - affect the enzymatic activity and product yield in vivo by modulating (i) the expression of the biosynthesis apparatus, (ii) the export of the nascent β-D-glucan polymer to the cell surface, and (iii) the organization of cellulose fibers into a higher-order structure. These auxiliary subunits play key roles in determining the quantity and structure of resulting biofilms, which is particularly important for the interactions of bacteria with higher organisms - leading to rhizosphere colonization and modulating the virulence of cellulose-producing bacterial pathogens inside and outside of host cells. We review the organization of four principal types of cellulose synthase operon found in various bacterial genomes, identify additional bcs genes that encode components of the cellulose biosynthesis and secretion machinery, and propose a unified nomenclature for these genes and subunits. We also discuss the role of cellulose as a key component of biofilms and in the choice between acute infection and persistence in the host.
Collapse
Affiliation(s)
- Ute Römling
- Department of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, Stockholm, Sweden.
| | - Michael Y Galperin
- National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
| |
Collapse
|
140
|
Yang H, Zimmer J, Yingling YG, Kubicki JD. How Cellulose Elongates--A QM/MM Study of the Molecular Mechanism of Cellulose Polymerization in Bacterial CESA. J Phys Chem B 2015; 119:6525-35. [PMID: 25942604 DOI: 10.1021/acs.jpcb.5b01433] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The catalytic mechanism of bacterial cellulose synthase was investigated by using a hybrid quantum mechanics and molecular mechanics (QM/MM) approach. The Michaelis complex model was built based on the X-ray crystal structure of the cellulose synthase subunits BcsA and BcsB containing a uridine diphosphate molecule and a translocating glucan. Our study identified an SN2-type transition structure corresponding to the nucleophilic attack of the nonreducing end O4 on the anomeric carbon C1, the breaking of the glycosidic bond C1-O1, and the transfer of proton from the nonreducing end O4 to the general base D343. The activation barrier found for this SN2-type transition state is 68 kJ/mol. The rate constant of polymerization is estimated to be ∼8.0 s(-1) via transition state theory. A similar SN2-type transition structure was also identified for a second glucose molecule added to the growing polysaccharide chain, which aligned with the polymer 180° rotated compared to the initially added unit. This study provides detailed insights into how cellulose is extended by one glucose molecule at a time and how the individual glucose units align into cellobiose repeating units.
Collapse
Affiliation(s)
- Hui Yang
- †Department of Geosciences, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Jochen Zimmer
- ‡Center for Membrane Biology and Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, Virginia 22908, United States
| | - Yaroslava G Yingling
- §Department of Materials Science and Engineering, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - James D Kubicki
- †Department of Geosciences, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| |
Collapse
|
141
|
Hobley L, Harkins C, MacPhee CE, Stanley-Wall NR. Giving structure to the biofilm matrix: an overview of individual strategies and emerging common themes. FEMS Microbiol Rev 2015; 39:649-69. [PMID: 25907113 PMCID: PMC4551309 DOI: 10.1093/femsre/fuv015] [Citation(s) in RCA: 331] [Impact Index Per Article: 36.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/09/2015] [Indexed: 01/24/2023] Open
Abstract
Biofilms are communities of microbial cells that underpin diverse processes including sewage bioremediation, plant growth promotion, chronic infections and industrial biofouling. The cells resident in the biofilm are encased within a self-produced exopolymeric matrix that commonly comprises lipids, proteins that frequently exhibit amyloid-like properties, eDNA and exopolysaccharides. This matrix fulfils a variety of functions for the community, from providing structural rigidity and protection from the external environment to controlling gene regulation and nutrient adsorption. Critical to the development of novel strategies to control biofilm infections, or the capability to capitalize on the power of biofilm formation for industrial and biotechnological uses, is an in-depth knowledge of the biofilm matrix. This is with respect to the structure of the individual components, the nature of the interactions between the molecules and the three-dimensional spatial organization. We highlight recent advances in the understanding of the structural and functional role that carbohydrates and proteins play within the biofilm matrix to provide three-dimensional architectural integrity and functionality to the biofilm community. We highlight, where relevant, experimental techniques that are allowing the boundaries of our understanding of the biofilm matrix to be extended using Escherichia coli, Staphylococcus aureus, Vibrio cholerae, and Bacillus subtilis as exemplars. Examining the structure and function of the biofilm extracellular matrix.
Collapse
Affiliation(s)
- Laura Hobley
- Division of Molecular Microbiology, College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
| | - Catriona Harkins
- Division of Molecular Microbiology, College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
| | - Cait E MacPhee
- James Clerk Maxwell Building, School of Physics, University of Edinburgh, Edinburgh EH9 3JZ, UK
| | - Nicola R Stanley-Wall
- Division of Molecular Microbiology, College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
| |
Collapse
|
142
|
Salmonella promotes virulence by repressing cellulose production. Proc Natl Acad Sci U S A 2015; 112:5183-8. [PMID: 25848006 DOI: 10.1073/pnas.1500989112] [Citation(s) in RCA: 88] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Cellulose is the most abundant organic polymer on Earth. In bacteria, cellulose confers protection against environmental insults and is a constituent of biofilms typically formed on abiotic surfaces. We report that, surprisingly, Salmonella enterica serovar Typhimurium makes cellulose when inside macrophages. We determine that preventing cellulose synthesis increases virulence, whereas stimulation of cellulose synthesis inside macrophages decreases virulence. An attenuated mutant lacking the mgtC gene exhibited increased cellulose levels due to increased expression of the cellulose synthase gene bcsA and of cyclic diguanylate, the allosteric activator of the BcsA protein. Inactivation of bcsA restored wild-type virulence to the Salmonella mgtC mutant, but not to other attenuated mutants displaying a wild-type phenotype regarding cellulose. Our findings indicate that a virulence determinant can promote pathogenicity by repressing a pathogen's antivirulence trait. Moreover, they suggest that controlling antivirulence traits increases long-term pathogen fitness by mediating a trade-off between acute virulence and transmission.
Collapse
|
143
|
Kumar M, Turner S. Plant cellulose synthesis: CESA proteins crossing kingdoms. PHYTOCHEMISTRY 2015; 112:91-9. [PMID: 25104231 DOI: 10.1016/j.phytochem.2014.07.009] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Revised: 04/16/2014] [Accepted: 07/07/2014] [Indexed: 05/03/2023]
Abstract
Cellulose is a biopolymer of considerable economic importance. It is synthesised by the cellulose synthase complex (CSC) in species ranging from bacteria to higher plants. Enormous progress in our understanding of bacterial cellulose synthesis has come with the recent publication of both the crystal structure and biochemical characterisation of a purified complex able to synthesis cellulose in vitro. A model structure of a plant CESA protein suggests considerable similarity between the bacterial and plant cellulose synthesis. In this review article we will cover current knowledge of how plant CESA proteins synthesise cellulose. In particular the focus will be on the lessons learned from the recent work on the catalytic mechanism and the implications that new data on cellulose structure has for the assembly of CESA proteins into the large complex that synthesis plant cellulose microfibrils.
Collapse
Affiliation(s)
- Manoj Kumar
- University of Manchester, Faculty of Life Science, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK
| | - Simon Turner
- University of Manchester, Faculty of Life Science, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK.
| |
Collapse
|
144
|
Wilson SM, Ho YY, Lampugnani ER, Van de Meene AML, Bain MP, Bacic A, Doblin MS. Determining the subcellular location of synthesis and assembly of the cell wall polysaccharide (1,3; 1,4)-β-D-glucan in grasses. THE PLANT CELL 2015; 27:754-71. [PMID: 25770111 PMCID: PMC4558670 DOI: 10.1105/tpc.114.135970] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2014] [Revised: 02/17/2015] [Accepted: 02/20/2015] [Indexed: 05/05/2023]
Abstract
The current dogma for cell wall polysaccharide biosynthesis is that cellulose (and callose) is synthesized at the plasma membrane (PM), whereas matrix phase polysaccharides are assembled in the Golgi apparatus. We provide evidence that (1,3;1,4)-β-D-glucan (mixed-linkage glucan [MLG]) does not conform to this paradigm. We show in various grass (Poaceae) species that MLG-specific antibody labeling is present in the wall but absent over Golgi, suggesting it is assembled at the PM. Antibodies to the MLG synthases, cellulose synthase-like F6 (CSLF6) and CSLH1, located CSLF6 to the endoplasmic reticulum, Golgi, secretory vesicles, and the PM and CSLH1 to the same locations apart from the PM. This pattern was recreated upon expression of VENUS-tagged barley (Hordeum vulgare) CSLF6 and CSLH1 in Nicotiana benthamiana leaves and, consistent with our biochemical analyses of native grass tissues, shown to be catalytically active with CSLF6 and CSLH1 in PM-enriched and PM-depleted membrane fractions, respectively. These data support a PM location for the synthesis of MLG by CSLF6, the predominant enzymatically active isoform. A model is proposed to guide future experimental approaches to dissect the molecular mechanism(s) of MLG assembly.
Collapse
Affiliation(s)
- Sarah M Wilson
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria 3010, Australia
| | - Yin Ying Ho
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria 3010, Australia
| | - Edwin R Lampugnani
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria 3010, Australia
| | - Allison M L Van de Meene
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria 3010, Australia
| | - Melissa P Bain
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria 3010, Australia
| | - Antony Bacic
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria 3010, Australia Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Victoria 3010, Australia
| | - Monika S Doblin
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria 3010, Australia
| |
Collapse
|
145
|
Payne CM, Knott BC, Mayes HB, Hansson H, Himmel ME, Sandgren M, Ståhlberg J, Beckham GT. Fungal Cellulases. Chem Rev 2015; 115:1308-448. [DOI: 10.1021/cr500351c] [Citation(s) in RCA: 533] [Impact Index Per Article: 59.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Christina M. Payne
- Department
of Chemical and Materials Engineering and Center for Computational
Sciences, University of Kentucky, 177 F. Paul Anderson Tower, Lexington, Kentucky 40506, United States
| | - Brandon C. Knott
- National
Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver
West Parkway, Golden, Colorado 80401, United States
| | - Heather B. Mayes
- Department
of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Henrik Hansson
- Department
of Chemistry and Biotechnology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Almas allé 5, SE-75651 Uppsala, Sweden
| | - Michael E. Himmel
- Biosciences
Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Mats Sandgren
- Department
of Chemistry and Biotechnology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Almas allé 5, SE-75651 Uppsala, Sweden
| | - Jerry Ståhlberg
- Department
of Chemistry and Biotechnology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Almas allé 5, SE-75651 Uppsala, Sweden
| | - Gregg T. Beckham
- National
Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver
West Parkway, Golden, Colorado 80401, United States
| |
Collapse
|
146
|
|
147
|
Abstract
Cellulose is the most abundant biopolymer on Earth, and certain organisms from bacteria to plants and animals synthesize cellulose as an extracellular polymer for various biological functions. Humans have used cellulose for millennia as a material and an energy source, and the advent of a lignocellulosic fuel industry will elevate it to the primary carbon source for the burgeoning renewable energy sector. Despite the biological and societal importance of cellulose, the molecular mechanism by which it is synthesized is now only beginning to emerge. On the basis of recent advances in structural and molecular biology on bacterial cellulose synthases, we review emerging concepts of how the enzymes polymerize glucose molecules, how the nascent polymer is transported across the plasma membrane, and how bacterial cellulose biosynthesis is regulated during biofilm formation. Additionally, we review evolutionary commonalities and differences between cellulose synthases that modulate the nature of the cellulose product formed.
Collapse
Affiliation(s)
- Joshua T. McNamara
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia 22908
| | - Jacob L.W. Morgan
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia 22908
| | - Jochen Zimmer
- Center for Membrane Biology, Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia 22908
| |
Collapse
|
148
|
Whiteley CG, Lee DJ. Bacterial diguanylate cyclases: structure, function and mechanism in exopolysaccharide biofilm development. Biotechnol Adv 2014; 33:124-141. [PMID: 25499693 DOI: 10.1016/j.biotechadv.2014.11.010] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2014] [Revised: 11/24/2014] [Accepted: 11/24/2014] [Indexed: 10/24/2022]
Abstract
The ubiquitous bacterial cyclic di-guanosine monophosphate (c-di-GMP) emerges as an important messenger for the control of many bacterial cellular functions including virulence, motility, bioluminescence, cellulose biosynthesis, adhesion, secretion, community behaviour, biofilm formation and cell differentiation. The synthesis of this cyclic nucleotide arises from external stimuli on various signalling domains within the N-terminal region of a dimeric diguanylate cyclase. This initiates the condensation of two molecules of guanosine triphosphate juxtaposed to each other within the C-terminal region of the enzyme. The biofilm from pathogenic microbes is highly resistant to antimicrobial agents suggesting that diguanylate cyclase and its product - c-di-GMP - are key biomedical targets for the inhibition of biofilm development. Furthermore the formation and long-term stability of the aerobic granule, a superior biofilm for biological wastewater treatment, can be controlled by stimulation of c-di-GMP. Any modulation of the synthetic pathways for c-di-GMP is clearly advantageous in terms of medical, industrial and/or environmental bioremediation implications. This review discusses the structure and reaction of individual diguanylate cyclase enzymes with a focus on new directions in c-di-GMP research. Specific attention is made on the molecular mechanisms that control bacterial exopolysaccharide biofilm formation and aerobic granules.
Collapse
Affiliation(s)
- Chris G Whiteley
- Graduate Institute of Applied Science & Technology, National Taiwan University of Science and Technology, Taipei, Taiwan.
| | - Duu-Jong Lee
- Department of Chemical Engineering, National Taiwan University of Science and Technology, Taipei, Taiwan; Department of Chemical Engineering, National Taiwan University, Taipei, Taiwan
| |
Collapse
|
149
|
Cosgrove DJ. Re-constructing our models of cellulose and primary cell wall assembly. CURRENT OPINION IN PLANT BIOLOGY 2014; 22:122-131. [PMID: 25460077 PMCID: PMC4293254 DOI: 10.1016/j.pbi.2014.11.001] [Citation(s) in RCA: 253] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Revised: 11/03/2014] [Accepted: 11/03/2014] [Indexed: 05/18/2023]
Abstract
The cellulose microfibril has more subtlety than is commonly recognized. Details of its structure may influence how matrix polysaccharides interact with its distinctive hydrophobic and hydrophilic surfaces to form a strong yet extensible structure. Recent advances in this field include the first structures of bacterial and plant cellulose synthases and revised estimates of microfibril structure, reduced from 36 to 18 chains. New results also indicate that cellulose interactions with xyloglucan are more limited than commonly believed, whereas pectin–cellulose interactions are more prevalent. Computational results indicate that xyloglucan binds tightest to the hydrophobic surface of cellulose microfibrils. Wall extensibility may be controlled at limited regions (‘biomechanical hotspots’) where cellulose–cellulose contacts are made, potentially mediated by trace amounts of xyloglucan.
Collapse
Affiliation(s)
- Daniel J Cosgrove
- Department of Biology, Penn State University, University Park, PA 16802, USA.
| |
Collapse
|
150
|
Yaron S, Römling U. Biofilm formation by enteric pathogens and its role in plant colonization and persistence. Microb Biotechnol 2014; 7:496-516. [PMID: 25351039 PMCID: PMC4265070 DOI: 10.1111/1751-7915.12186] [Citation(s) in RCA: 149] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2014] [Accepted: 09/16/2014] [Indexed: 12/28/2022] Open
Abstract
The significant increase in foodborne outbreaks caused by contaminated fresh produce, such as alfalfa sprouts, lettuce, melons, tomatoes and spinach, during the last 30 years stimulated investigation of the mechanisms of persistence of human pathogens on plants. Emerging evidence suggests that Salmonella enterica and Escherichia coli, which cause the vast majority of fresh produce outbreaks, are able to adhere to and to form biofilms on plants leading to persistence and resistance to disinfection treatments, which subsequently can cause human infections and major outbreaks. In this review, we present the current knowledge about host, bacterial and environmental factors that affect the attachment to plant tissue and the process of biofilm formation by S. enterica and E. coli, and discuss how biofilm formation assists in persistence of pathogens on the plants. Mechanisms used by S. enterica and E. coli to adhere and persist on abiotic surfaces and mammalian cells are partially similar and also used by plant pathogens and symbionts. For example, amyloid curli fimbriae, part of the extracellular matrix of biofilms, frequently contribute to adherence and are upregulated upon adherence and colonization of plant material. Also the major exopolysaccharide of the biofilm matrix, cellulose, is an adherence factor not only of S. enterica and E. coli, but also of plant symbionts and pathogens. Plants, on the other hand, respond to colonization by enteric pathogens with a variety of defence mechanisms, some of which can effectively inhibit biofilm formation. Consequently, plant compounds might be investigated for promising novel antibiofilm strategies.
Collapse
Affiliation(s)
- Sima Yaron
- Faculty of Biotechnology and Food Engineering, Technion – Israel Institute of TechnologyHaifa, 32000, Israel
| | - Ute Römling
- Department of Microbiology, Tumor and Cell Biology, Karolinska InstitutetStockholm, Sweden
| |
Collapse
|