• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4642360)   Today's Articles (1996)   Subscriber (50483)
For: Browning DF, Grainger DC, Busby SJW. Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression. Curr Opin Microbiol 2010;13:773-80. [DOI: 10.1016/j.mib.2010.09.013] [Citation(s) in RCA: 230] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2010] [Accepted: 09/16/2010] [Indexed: 11/25/2022]
Number Cited by Other Article(s)
151
Sharadamma N, Harshavardhana Y, Ravishankar A, Anand P, Chandra N, Muniyappa K. Molecular dissection of Mycobacterium tuberculosis integration host factor reveals novel insights into the mode of DNA binding and nucleoid compaction. J Biol Chem 2014;289:34325-40. [PMID: 25324543 DOI: 10.1074/jbc.m114.608596] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
152
van der Maarel JRC, Zhang C, van Kan JA. A Nanochannel Platform for Single DNA Studies: From Crowding, Protein DNA Interaction, to Sequencing of Genomic Information. Isr J Chem 2014. [DOI: 10.1002/ijch.201400091] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
153
Guazzaroni ME, Silva-Rocha R. Expanding the logic of bacterial promoters using engineered overlapping operators for global regulators. ACS Synth Biol 2014;3:666-75. [PMID: 25036188 DOI: 10.1021/sb500084f] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
154
Two Fis regulators directly repress the expression of numerous effector-encoding genes in Legionella pneumophila. J Bacteriol 2014;196:4172-83. [PMID: 25225276 DOI: 10.1128/jb.02017-14] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
155
Ghosh S, Mallick B, Nagaraja V. Direct regulation of topoisomerase activity by a nucleoid-associated protein. Nucleic Acids Res 2014;42:11156-65. [PMID: 25200077 PMCID: PMC4176182 DOI: 10.1093/nar/gku804] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
156
Dorman CJ. H-NS-like nucleoid-associated proteins, mobile genetic elements and horizontal gene transfer in bacteria. Plasmid 2014;75:1-11. [DOI: 10.1016/j.plasmid.2014.06.004] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2014] [Revised: 06/23/2014] [Accepted: 06/25/2014] [Indexed: 11/29/2022]
157
GlnR negatively regulates the transcription of the alanine dehydrogenase encoding gene ald in Amycolatopsis mediterranei U32 under nitrogen limited conditions via specific binding to its major transcription initiation site. PLoS One 2014;9:e104811. [PMID: 25144373 PMCID: PMC4140684 DOI: 10.1371/journal.pone.0104811] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2014] [Accepted: 07/14/2014] [Indexed: 11/25/2022]  Open
158
Ho CH, Wang HC, Ko TP, Chang YC, Wang AHJ. The T4 phage DNA mimic protein Arn inhibits the DNA binding activity of the bacterial histone-like protein H-NS. J Biol Chem 2014;289:27046-27054. [PMID: 25118281 DOI: 10.1074/jbc.m114.590851] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
159
Lim CJ, Kenney LJ, Yan J. Single-molecule studies on the mechanical interplay between DNA supercoiling and H-NS DNA architectural properties. Nucleic Acids Res 2014;42:8369-78. [PMID: 24990375 PMCID: PMC4117784 DOI: 10.1093/nar/gku566] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
160
Rybenkov VV. Maintenance of chromosome structure in Pseudomonas aeruginosa. FEMS Microbiol Lett 2014;356:154-65. [PMID: 24863732 DOI: 10.1111/1574-6968.12478] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2014] [Revised: 04/11/2014] [Accepted: 05/19/2014] [Indexed: 11/30/2022]  Open
161
Weng X, Xiao J. Spatial organization of transcription in bacterial cells. Trends Genet 2014;30:287-97. [PMID: 24862529 DOI: 10.1016/j.tig.2014.04.008] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Revised: 04/28/2014] [Accepted: 04/29/2014] [Indexed: 11/27/2022]
162
Intracellular concentrations of 65 species of transcription factors with known regulatory functions in Escherichia coli. J Bacteriol 2014;196:2718-27. [PMID: 24837290 DOI: 10.1128/jb.01579-14] [Citation(s) in RCA: 74] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
163
HupB, a nucleoid-associated protein of Mycobacterium tuberculosis, is modified by serine/threonine protein kinases in vivo. J Bacteriol 2014;196:2646-57. [PMID: 24816602 DOI: 10.1128/jb.01625-14] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
164
Structural change of DNA induced by nucleoid proteins: growth phase-specific Fis and stationary phase-specific Dps. Biophys J 2014;105:1037-44. [PMID: 23972855 DOI: 10.1016/j.bpj.2013.07.025] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2013] [Revised: 07/10/2013] [Accepted: 07/15/2013] [Indexed: 12/29/2022]  Open
165
Ahmed W, Menon S, Godbole AA, Karthik PVDNB, Nagaraja V. Conditional silencing of topoisomerase I gene of Mycobacterium tuberculosis validates its essentiality for cell survival. FEMS Microbiol Lett 2014;353:116-23. [PMID: 24593153 DOI: 10.1111/1574-6968.12412] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2014] [Revised: 02/25/2014] [Accepted: 02/27/2014] [Indexed: 12/19/2022]  Open
166
Bracha D, Bar-Ziv RH. Dendritic and Nanowire Assemblies of Condensed DNA Polymer Brushes. J Am Chem Soc 2014;136:4945-53. [DOI: 10.1021/ja410960w] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
167
Tong H, Mrázek J. Investigating the interplay between nucleoid-associated proteins, DNA curvature, and CRISPR elements using comparative genomics. PLoS One 2014;9:e90940. [PMID: 24595272 PMCID: PMC3940949 DOI: 10.1371/journal.pone.0090940] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Accepted: 02/06/2014] [Indexed: 02/03/2023]  Open
168
Spahn C, Endesfelder U, Heilemann M. Super-resolution imaging of Escherichia coli nucleoids reveals highly structured and asymmetric segregation during fast growth. J Struct Biol 2014;185:243-9. [DOI: 10.1016/j.jsb.2014.01.007] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2013] [Revised: 01/13/2014] [Accepted: 01/20/2014] [Indexed: 11/25/2022]
169
Abellón-Ruiz J, Bernal-Bernal D, Abellán M, Fontes M, Padmanabhan S, Murillo FJ, Elías-Arnanz M. The CarD/CarG regulatory complex is required for the action of several members of the large set of Myxococcus xanthus extracytoplasmic function σ factors. Environ Microbiol 2014;16:2475-90. [PMID: 24428729 DOI: 10.1111/1462-2920.12386] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2013] [Accepted: 12/27/2013] [Indexed: 11/25/2022]
170
Powikrowska M, Oetke S, Jensen PE, Krupinska K. Dynamic composition, shaping and organization of plastid nucleoids. FRONTIERS IN PLANT SCIENCE 2014;5:424. [PMID: 25237313 PMCID: PMC4154389 DOI: 10.3389/fpls.2014.00424] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2014] [Accepted: 08/08/2014] [Indexed: 05/18/2023]
171
Thacker VV, Bromek K, Meijer B, Kotar J, Sclavi B, Lagomarsino MC, Keyser UF, Cicuta P. Bacterial nucleoid structure probed by active drag and resistive pulse sensing. Integr Biol (Camb) 2014;6:184-91. [DOI: 10.1039/c3ib40147b] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
172
Flåtten I, Skarstad K. The Fis protein has a stimulating role in initiation of replication in Escherichia coli in vivo. PLoS One 2013;8:e83562. [PMID: 24358293 PMCID: PMC3865182 DOI: 10.1371/journal.pone.0083562] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2013] [Accepted: 11/13/2013] [Indexed: 12/31/2022]  Open
173
Mechanosensing of DNA bending in a single specific protein-DNA complex. Sci Rep 2013;3:3508. [PMID: 24336435 PMCID: PMC3863814 DOI: 10.1038/srep03508] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2013] [Accepted: 11/29/2013] [Indexed: 01/10/2023]  Open
174
Muskhelishvili G, Travers A. Integration of syntactic and semantic properties of the DNA code reveals chromosomes as thermodynamic machines converting energy into information. Cell Mol Life Sci 2013;70:4555-67. [PMID: 23771629 PMCID: PMC11113758 DOI: 10.1007/s00018-013-1394-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2013] [Revised: 05/28/2013] [Accepted: 05/29/2013] [Indexed: 11/29/2022]
175
Jin DJ, Cagliero C, Zhou YN. Role of RNA polymerase and transcription in the organization of the bacterial nucleoid. Chem Rev 2013;113:8662-82. [PMID: 23941620 PMCID: PMC3830623 DOI: 10.1021/cr4001429] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
176
Zhang C, Guttula D, Liu F, Malar PP, Ng SY, Dai L, Doyle PS, van Kan JA, van der Maarel JRC. Effect of H-NS on the elongation and compaction of single DNA molecules in a nanospace. SOFT MATTER 2013;9:9593-601. [PMID: 26029766 DOI: 10.1039/c3sm51214b] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
177
Mahdavi J, Royer PJ, Sjölinder HS, Azimi S, Self T, Stoof J, Wheldon LM, Brännström K, Wilson R, Moreton J, Moir JWB, Sihlbom C, Borén T, Jonsson AB, Soultanas P, Ala'Aldeen DAA. Pro-inflammatory cytokines can act as intracellular modulators of commensal bacterial virulence. Open Biol 2013;3:130048. [PMID: 24107297 PMCID: PMC3814720 DOI: 10.1098/rsob.130048] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
178
Joyeux M, Vreede J. A model of H-NS mediated compaction of bacterial DNA. Biophys J 2013;104:1615-22. [PMID: 23561538 DOI: 10.1016/j.bpj.2013.02.043] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2012] [Revised: 01/24/2013] [Accepted: 02/12/2013] [Indexed: 12/26/2022]  Open
179
DNA thermodynamics shape chromosome organization and topology. Biochem Soc Trans 2013;41:548-53. [PMID: 23514152 DOI: 10.1042/bst20120334] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
180
Hudek L, Pearson LA, Michalczyk A, Neilan BA, Ackland ML. Functional characterization of the twin ZIP/SLC39 metal transporters, NpunF3111 and NpunF2202 in Nostoc punctiforme. Appl Microbiol Biotechnol 2013;97:8649-62. [PMID: 23812332 DOI: 10.1007/s00253-013-5047-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Revised: 06/06/2013] [Accepted: 06/09/2013] [Indexed: 10/26/2022]
181
Singh SS, Grainger DC. H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions. PLoS Genet 2013;9:e1003589. [PMID: 23818873 PMCID: PMC3688479 DOI: 10.1371/journal.pgen.1003589] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Accepted: 05/08/2013] [Indexed: 11/18/2022]  Open
182
Myers KS, Yan H, Ong IM, Chung D, Liang K, Tran F, Keleş S, Landick R, Kiley PJ. Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding. PLoS Genet 2013;9:e1003565. [PMID: 23818864 PMCID: PMC3688515 DOI: 10.1371/journal.pgen.1003565] [Citation(s) in RCA: 132] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Accepted: 04/29/2013] [Indexed: 01/05/2023]  Open
183
Novotny LA, Amer AO, Brockson ME, Goodman SD, Bakaletz LO. Structural stability of Burkholderia cenocepacia biofilms is reliant on eDNA structure and presence of a bacterial nucleic acid binding protein. PLoS One 2013;8:e67629. [PMID: 23799151 PMCID: PMC3682984 DOI: 10.1371/journal.pone.0067629] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2013] [Accepted: 05/22/2013] [Indexed: 12/14/2022]  Open
184
Solano-Collado V, Lurz R, Espinosa M, Bravo A. The pneumococcal MgaSpn virulence transcriptional regulator generates multimeric complexes on linear double-stranded DNA. Nucleic Acids Res 2013;41:6975-91. [PMID: 23723245 PMCID: PMC3737547 DOI: 10.1093/nar/gkt445] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
185
Hadizadeh Yazdi N, Guet CC, Johnson RC, Marko JF. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Mol Microbiol 2013;86:1318-33. [PMID: 23078205 DOI: 10.1111/mmi.12071] [Citation(s) in RCA: 108] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/14/2012] [Indexed: 11/30/2022]
186
Wang H, Liu B, Wang Q, Wang L. Genome-wide analysis of the salmonella Fis regulon and its regulatory mechanism on pathogenicity islands. PLoS One 2013;8:e64688. [PMID: 23717649 PMCID: PMC3662779 DOI: 10.1371/journal.pone.0064688] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2013] [Accepted: 04/17/2013] [Indexed: 11/19/2022]  Open
187
Kleine Borgmann LAK, Ries J, Ewers H, Ulbrich MH, Graumann PL. The bacterial SMC complex displays two distinct modes of interaction with the chromosome. Cell Rep 2013;3:1483-92. [PMID: 23665219 DOI: 10.1016/j.celrep.2013.04.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2012] [Revised: 10/26/2012] [Accepted: 04/04/2013] [Indexed: 11/18/2022]  Open
188
Ma Q, Yin Y, Schell MA, Zhang H, Li G, Xu Y. Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions. Nucleic Acids Res 2013;41:5594-603. [PMID: 23599001 PMCID: PMC3675479 DOI: 10.1093/nar/gkt261] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
189
Qu Y, Lim CJ, Whang YR, Liu J, Yan J. Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2. Nucleic Acids Res 2013;41:5263-72. [PMID: 23580555 PMCID: PMC3664827 DOI: 10.1093/nar/gkt249] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
190
Genome architecture and global gene regulation in bacteria: making progress towards a unified model? Nat Rev Microbiol 2013;11:349-55. [DOI: 10.1038/nrmicro3007] [Citation(s) in RCA: 151] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
191
Sanchez A, Choubey S, Kondev J. Regulation of noise in gene expression. Annu Rev Biophys 2013;42:469-91. [PMID: 23527780 DOI: 10.1146/annurev-biophys-083012-130401] [Citation(s) in RCA: 124] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
192
Sobetzko P, Glinkowska M, Travers A, Muskhelishvili G. DNA thermodynamic stability and supercoil dynamics determine the gene expression program during the bacterial growth cycle. MOLECULAR BIOSYSTEMS 2013;9:1643-51. [PMID: 23493878 DOI: 10.1039/c3mb25515h] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
193
Swiercz JP, Nanji T, Gloyd M, Guarné A, Elliot MA. A novel nucleoid-associated protein specific to the actinobacteria. Nucleic Acids Res 2013;41:4171-84. [PMID: 23427309 PMCID: PMC3627587 DOI: 10.1093/nar/gkt095] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
194
Ma Q, Xu Y. Global genomic arrangement of bacterial genes is closely tied with the total transcriptional efficiency. GENOMICS PROTEOMICS & BIOINFORMATICS 2013;11:66-71. [PMID: 23434046 PMCID: PMC4357662 DOI: 10.1016/j.gpb.2013.01.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2012] [Revised: 01/09/2013] [Accepted: 01/14/2013] [Indexed: 01/03/2023]
195
Zarei M, Sclavi B, Cosentino Lagomarsino M. Gene silencing and large-scale domain structure of the E. coli genome. MOLECULAR BIOSYSTEMS 2013;9:758-67. [DOI: 10.1039/c3mb25364c] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
196
Mackie GA. RNase E: at the interface of bacterial RNA processing and decay. Nat Rev Microbiol 2012;11:45-57. [DOI: 10.1038/nrmicro2930] [Citation(s) in RCA: 236] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
197
Predicting the effect of ions on the conformation of the H-NS dimerization domain. Biophys J 2012;103:89-98. [PMID: 22828335 DOI: 10.1016/j.bpj.2012.05.040] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2011] [Revised: 03/11/2012] [Accepted: 05/15/2012] [Indexed: 11/23/2022]  Open
198
Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res 2012. [PMID: 23203884 PMCID: PMC3531196 DOI: 10.1093/nar/gks1201] [Citation(s) in RCA: 351] [Impact Index Per Article: 29.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
199
Ptacin JL, Shapiro L. Chromosome architecture is a key element of bacterial cellular organization. Cell Microbiol 2012;15:45-52. [PMID: 23078580 DOI: 10.1111/cmi.12049] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2012] [Revised: 10/05/2012] [Accepted: 10/09/2012] [Indexed: 12/01/2022]
200
Norris V, Amar P. Chromosome Replication in Escherichia coli: Life on the Scales. Life (Basel) 2012;2:286-312. [PMID: 25371267 PMCID: PMC4187155 DOI: 10.3390/life2040286] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2012] [Revised: 10/01/2012] [Accepted: 10/15/2012] [Indexed: 12/22/2022]  Open
PrevPage 4 of 5 12345Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA