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For: Stelzer EHK. Light-sheet fluorescence microscopy for quantitative biology. Nat Methods 2015;12:23-6. [PMID: 25549266 DOI: 10.1038/nmeth.3219] [Citation(s) in RCA: 173] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Number Cited by Other Article(s)
151
Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM). THE BIOLOGICAL BULLETIN 2016;231:26-39. [PMID: 27638693 PMCID: PMC5481201 DOI: 10.1086/689589] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
152
Liu Z, Keller PJ. Emerging Imaging and Genomic Tools for Developmental Systems Biology. Dev Cell 2016;36:597-610. [PMID: 27003934 DOI: 10.1016/j.devcel.2016.02.016] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Revised: 02/18/2016] [Accepted: 02/19/2016] [Indexed: 11/16/2022]
153
Welf ES, Driscoll MK, Dean KM, Schäfer C, Chu J, Davidson MW, Lin MZ, Danuser G, Fiolka R. Quantitative Multiscale Cell Imaging in Controlled 3D Microenvironments. Dev Cell 2016;36:462-75. [PMID: 26906741 DOI: 10.1016/j.devcel.2016.01.022] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Revised: 11/11/2015] [Accepted: 01/26/2016] [Indexed: 12/30/2022]
154
Fujita K. Follow-up review: recent progress in the development of super-resolution optical microscopy. Microscopy (Oxf) 2016;65:275-81. [PMID: 27385787 DOI: 10.1093/jmicro/dfw022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 05/19/2016] [Indexed: 11/12/2022]  Open
155
Liu C, Liu YL, Perillo EP, Dunn AK, Yeh HC. Single-Molecule Tracking and Its Application in Biomolecular Binding Detection. IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS : A PUBLICATION OF THE IEEE LASERS AND ELECTRO-OPTICS SOCIETY 2016;22:6804013. [PMID: 27660404 PMCID: PMC5028128 DOI: 10.1109/jstqe.2016.2568160] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
156
Schnorrenberg S, Grotjohann T, Vorbrüggen G, Herzig A, Hell SW, Jakobs S. In vivo super-resolution RESOLFT microscopy of Drosophila melanogaster. eLife 2016;5. [PMID: 27355614 PMCID: PMC4927295 DOI: 10.7554/elife.15567] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Accepted: 06/07/2016] [Indexed: 11/16/2022]  Open
157
Rieckher M. Light Sheet Microscopy to Measure Protein Dynamics. J Cell Physiol 2016;232:27-35. [DOI: 10.1002/jcp.25451] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Accepted: 06/07/2016] [Indexed: 12/26/2022]
158
Feng S, Holmes P. Will big data yield new mathematics? An evolving synergy with neuroscience. IMA JOURNAL OF APPLIED MATHEMATICS 2016;81:432-456. [PMID: 27516705 PMCID: PMC4975073 DOI: 10.1093/imamat/hxw026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Indexed: 06/06/2023]
159
Tomer R, Lovett-Barron M, Kauvar I, Andalman A, Burns VM, Sankaran S, Grosenick L, Broxton M, Yang S, Deisseroth K. SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function. Cell 2016;163:1796-806. [PMID: 26687363 PMCID: PMC4775738 DOI: 10.1016/j.cell.2015.11.061] [Citation(s) in RCA: 147] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2015] [Revised: 11/01/2015] [Accepted: 11/23/2015] [Indexed: 12/11/2022]
160
Icha J, Schmied C, Sidhaye J, Tomancak P, Preibisch S, Norden C. Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development. J Vis Exp 2016:e53966. [PMID: 27167079 PMCID: PMC4941907 DOI: 10.3791/53966] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
161
BERTHET BÉATRICE, MAIZEL ALEXIS. Light sheet microscopy and live imaging of plants. J Microsc 2016;263:158-64. [DOI: 10.1111/jmi.12393] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Revised: 02/03/2016] [Accepted: 02/10/2016] [Indexed: 12/31/2022]
162
BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One 2016;11:e0148379. [PMID: 26978075 PMCID: PMC4792475 DOI: 10.1371/journal.pone.0148379] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2015] [Accepted: 01/17/2016] [Indexed: 12/23/2022]  Open
163
von Wangenheim D, Fangerau J, Schmitz A, Smith RS, Leitte H, Stelzer EHK, Maizel A. Rules and Self-Organizing Properties of Post-embryonic Plant Organ Cell Division Patterns. Curr Biol 2016;26:439-49. [PMID: 26832441 DOI: 10.1016/j.cub.2015.12.047] [Citation(s) in RCA: 99] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Revised: 11/18/2015] [Accepted: 12/09/2015] [Indexed: 11/18/2022]
164
Scherzinger A, Kleene F, Dierkes C, Kiefer F, Hinrichs KH, Jiang X. Automated Segmentation of Immunostained Cell Nuclei in 3D Ultramicroscopy Images. LECTURE NOTES IN COMPUTER SCIENCE 2016. [DOI: 10.1007/978-3-319-45886-1_9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
165
Koo BU, Kang Y, Moon S, Lee WG. Spirally-patterned pinhole arrays for long-term fluorescence cell imaging. Analyst 2015;140:7373-81. [PMID: 26381726 DOI: 10.1039/c5an01423a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
166
Treweek JB, Chan KY, Flytzanis NC, Yang B, Deverman BE, Greenbaum A, Lignell A, Xiao C, Cai L, Ladinsky MS, Bjorkman PJ, Fowlkes CC, Gradinaru V. Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping. Nat Protoc 2015;10:1860-1896. [PMID: 26492141 PMCID: PMC4917295 DOI: 10.1038/nprot.2015.122] [Citation(s) in RCA: 196] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
167
Iber D, Karimaddini Z, Ünal E. Image-based modelling of organogenesis. Brief Bioinform 2015;17:616-27. [DOI: 10.1093/bib/bbv093] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2015] [Indexed: 01/05/2023]  Open
168
Light-induced cell damage in live-cell super-resolution microscopy. Sci Rep 2015;5:15348. [PMID: 26481189 PMCID: PMC4611486 DOI: 10.1038/srep15348] [Citation(s) in RCA: 312] [Impact Index Per Article: 31.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Accepted: 09/22/2015] [Indexed: 12/11/2022]  Open
169
Bosse JB, Hogue IB, Feric M, Thiberge SY, Sodeik B, Brangwynne CP, Enquist LW. Remodeling nuclear architecture allows efficient transport of herpesvirus capsids by diffusion. Proc Natl Acad Sci U S A 2015;112:E5725-33. [PMID: 26438852 PMCID: PMC4620878 DOI: 10.1073/pnas.1513876112] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
170
Puah WC, Wasser M. Live imaging of muscles in Drosophila metamorphosis: Towards high-throughput gene identification and function analysis. Methods 2015;96:103-117. [PMID: 26431669 DOI: 10.1016/j.ymeth.2015.09.028] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2015] [Revised: 09/28/2015] [Accepted: 09/29/2015] [Indexed: 12/16/2022]  Open
171
Amat F, Höckendorf B, Wan Y, Lemon WC, McDole K, Keller PJ. Efficient processing and analysis of large-scale light-sheet microscopy data. Nat Protoc 2015;10:1679-96. [PMID: 26426501 DOI: 10.1038/nprot.2015.111] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
172
Full-color structured illumination optical sectioning microscopy. Sci Rep 2015;5:14513. [PMID: 26415516 PMCID: PMC4586488 DOI: 10.1038/srep14513] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2015] [Accepted: 09/02/2015] [Indexed: 11/17/2022]  Open
173
Live imaging of Tribolium castaneum embryonic development using light-sheet-based fluorescence microscopy. Nat Protoc 2015;10:1486-507. [PMID: 26334868 DOI: 10.1038/nprot.2015.093] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
174
Welling M, Ponti A, Pantazis P. Symmetry breaking in the early mammalian embryo: the case for quantitative single-cell imaging analysis. Mol Hum Reprod 2015;22:172-81. [DOI: 10.1093/molehr/gav048] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Accepted: 08/25/2015] [Indexed: 12/23/2022]  Open
175
3D print customized sample holders for live light sheet microscopy. Biochem Biophys Res Commun 2015;463:1141-3. [DOI: 10.1016/j.bbrc.2015.06.072] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Accepted: 06/10/2015] [Indexed: 02/01/2023]
176
Mathew B, Schmitz A, Muñoz-Descalzo S, Ansari N, Pampaloni F, Stelzer EHK, Fischer SC. Robust and automated three-dimensional segmentation of densely packed cell nuclei in different biological specimens with Lines-of-Sight decomposition. BMC Bioinformatics 2015;16:187. [PMID: 26049713 PMCID: PMC4458345 DOI: 10.1186/s12859-015-0617-x] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Accepted: 05/18/2015] [Indexed: 12/02/2022]  Open
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