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Zhao N, Jiang M, Li Q, Gao Q, Zhang J, Liao M, Cao H. Cyhalofop-butyl resistance conferred by a novel Trp-2027-Leu mutation of acetyl-CoA carboxylase and enhanced metabolism in Leptochloa chinensis. PEST MANAGEMENT SCIENCE 2022; 78:1176-1186. [PMID: 34822218 DOI: 10.1002/ps.6734] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 11/21/2021] [Accepted: 11/25/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Chinese sprangletop (Leptochloa chinensis (L.) Nees) is an invasive grass weed severely infesting rice fields across China. In October 2020, a suspected resistant Leptochloa chinensis population HFFD3 that survived the acetyl-CoA carboxylase (ACCase)-inhibiting herbicide cyhalofop-butyl applied at its field-recommended rate was collected from a rice field in Feidong County, Anhui Province, China. This study aimed to determine the resistance profile of HFFD3 to ACCase inhibitors and to investigate its mechanisms of resistance to cyhalofop-butyl. RESULTS Single-dose testing confirmed that HFFD3 had evolved resistance to cyhalofop-butyl. Two loci encoding plastidic ACCase were each amplified from the susceptible (S) and resistant (R, HFFD3) individual plants. Target gene sequencing and derived cleaved amplified polymorphic sequence assay revealed all the R plants carried a Trp-2027-Leu substitution in their ACCase1,2 copies. Dose-response bioassays revealed that HFFD3 was highly resistant to cyhalofop-butyl and exhibited cross-resistance to metamifop, fenoxaprop-P-ethyl, quizalofop-P-ethyl, and clethodim. Pre-treatment with piperonyl butoxide and 4-chloro-7-nitrobenzoxadiazole considerably reversed the resistance of the R plants to cyhalofop-butyl, by 23% and 43%, respectively. Liquid chromatography-tandem mass spectrometry analysis suggested the metabolic rates of cyhalofop-butyl were significantly faster in the R than in the S plants. CONCLUSION This study confirmed the first case of an arable weed species featuring cross-resistance to ACCase-inhibiting herbicides due to a novel Trp-2027-Leu mutation of ACCase. Target gene mutation and cytochrome P450s- and glutathione-S-transferases-involved enhanced metabolism may have simultaneously participated in the resistance of HFFD3 population to cyhalofop-butyl.
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Affiliation(s)
- Ning Zhao
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
- Anhui Province Engineering Laboratory for Green Pesticide Development and Application, School of Plant Protection, Anhui Agricultural University, Hefei, China
| | - Minghao Jiang
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
- Anhui Province Engineering Laboratory for Green Pesticide Development and Application, School of Plant Protection, Anhui Agricultural University, Hefei, China
| | - Qi Li
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
- Anhui Province Engineering Laboratory for Green Pesticide Development and Application, School of Plant Protection, Anhui Agricultural University, Hefei, China
| | - Quan Gao
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
- Anhui Province Engineering Laboratory for Green Pesticide Development and Application, School of Plant Protection, Anhui Agricultural University, Hefei, China
| | - Jingxu Zhang
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
- Anhui Province Engineering Laboratory for Green Pesticide Development and Application, School of Plant Protection, Anhui Agricultural University, Hefei, China
| | - Min Liao
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
- Anhui Province Engineering Laboratory for Green Pesticide Development and Application, School of Plant Protection, Anhui Agricultural University, Hefei, China
| | - Haiqun Cao
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
- Anhui Province Engineering Laboratory for Green Pesticide Development and Application, School of Plant Protection, Anhui Agricultural University, Hefei, China
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152
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Li J, Zhang Z, Lei Q, Lu B, Jin C, Liu X, Wang Y, Bai L. Multiple herbicide resistance in Eleusine indica from sugarcane fields in China. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2022; 182:105040. [PMID: 35249648 DOI: 10.1016/j.pestbp.2022.105040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 01/05/2022] [Accepted: 01/13/2022] [Indexed: 06/14/2023]
Abstract
Long-term reliance on herbicide weed control has led to resistance evolution in Eleusine indica in sugarcane fields of Guangxi Zhuang autonomous region. Ninety-six E. indica lines were collected from this region, and their response was tested to six herbicides: glyphosate; glufosinate; PSII-inhibitors diuron and atrazine; and PSI inhibitors paraquat and diquat. Target-site resistance mechanisms were examined in specific lines with multiple resistance to three herbicide modes of action. Of 96 E. indica lines, 51, 26, and 24 lines had resistance to diuron, atrazine, and diquat, respectively, while 14 and 9 had resistance to paraquat and glyphosate. Among 25 lines tested with multiple resistance, 7 lines exhibited resistance to three herbicide modes of action. In two multiple resistant lines (GXER2, GXER5), amplification/over-expression/mutations of the EPSPS gene contributed to the very high-level (up to 109-fold) glyphosate resistance. No target-site mutations/over-expression were identified in the psbA gene in these two lines, so non-target-site resistance mechanisms were likely responsible for the low-level (3-fold) resistance to the PSII herbicides diuron and atrazine. A high-level (23-fold) of paraquat resistance was observed in GXER5, and a low-level (5-fold) paraquat resistance was found in GXER2. Multiple herbicide resistance in E. indica has evolved in sugarcane fields of Guangxi Zhuang autonomous region with diverse resistance mechanisms. Therefore, diversified weed control tactics should be adopted to prevent this weed.
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Affiliation(s)
- Jingbo Li
- Key Laboratory of Green Control of Crop Pests in Hunan Higher Education, Hunan Provincial Collaborative Innovation Center for Field Weed Control, Hunan University of Humanities, Science and Technology, Loudi, China; Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Plant Protection Research Institute, Guangxi Academy of Agricultural Science, Nanning, China
| | - Zhiqian Zhang
- Key Laboratory of Green Control of Crop Pests in Hunan Higher Education, Hunan Provincial Collaborative Innovation Center for Field Weed Control, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Qi Lei
- Key Laboratory of Green Control of Crop Pests in Hunan Higher Education, Hunan Provincial Collaborative Innovation Center for Field Weed Control, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Bugao Lu
- Key Laboratory of Green Control of Crop Pests in Hunan Higher Education, Hunan Provincial Collaborative Innovation Center for Field Weed Control, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Chenzhong Jin
- Key Laboratory of Green Control of Crop Pests in Hunan Higher Education, Hunan Provincial Collaborative Innovation Center for Field Weed Control, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Xiu Liu
- Key Laboratory of Green Control of Crop Pests in Hunan Higher Education, Hunan Provincial Collaborative Innovation Center for Field Weed Control, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Yanhui Wang
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Plant Protection Research Institute, Guangxi Academy of Agricultural Science, Nanning, China.
| | - Lianyang Bai
- Hunan Provincial Key Laboratory for Biology and Control of Weed, Hunan Academy of Agricultural Science, Changsha, China.
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153
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Cai X, Chen J, Wang X, Gao H, Xiang B, Dong L. Mefenacet resistance in multiple herbicide-resistant Echinochloa crus-galli L. populations. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2022; 182:105038. [PMID: 35249656 DOI: 10.1016/j.pestbp.2022.105038] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 01/11/2022] [Accepted: 01/12/2022] [Indexed: 06/14/2023]
Abstract
Echinochloa crus-galli L., a notorious weed in rice paddy fields, is usually kept under control by mefenacet application at the pre-emergence or early post-emergence stage. Due to continuous and repeated usage, E. crus-galli is developing resistance to mefenacet in China. Two putative resistant and one susceptible E. crus-galli populations were collected from paddy fields in Jiangsu Province to characterize their herbicide resistance. Compared with the susceptible population, the two mefenacet-resistant populations had 2.8- and 4.1-times greater pre-emergence resistance, and 10- and 6.8-times greater early post-emergence resistance to mefenacet. These mefenacet-resistant E. crus-galli populations also exhibited cross- or multiple-resistance to acetochlor, pyraclonil, imazamox, and quinclorac. However, when the glutathione S-transferase (GST) inhibitor 4-chloro-7-nitrobenzoxadiazole (NBD-Cl) was applied prior to post-emergence treatment, mefenacet resistance levels were reduced in both populations. Additionally, GST activity in vivo in one resistant population was much higher than the susceptible population after mefenacet application. The very long chain fatty acid elongases (VLCFAEs) from both mefenacet-resistant populations required much higher mefenacet concentration to inhibit their activity. The reduced sensitivity of VLCFAEs to mefenacet indicates the presence of a target-site resistance mechanism and induction of high GST activity may provide additional contribution to E. crus-galli mefenacet resistance through a non-target-site mechanism.
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Affiliation(s)
- Xinyi Cai
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; Key Laboratory of Integrated Management of Crop Diseases and Pests (Nanjing Agricultural University), Ministry of Education, China
| | - Jinyi Chen
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; Key Laboratory of Integrated Management of Crop Diseases and Pests (Nanjing Agricultural University), Ministry of Education, China.
| | - Xiaofei Wang
- College of Science, Nanjing Agricultural University, Nanjing 210095, China; Radioisotope Laboratory of Nanjing Agricultural University (Nanjing Agricultural University), Ministry of Education, China
| | - Haitao Gao
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; Key Laboratory of Integrated Management of Crop Diseases and Pests (Nanjing Agricultural University), Ministry of Education, China
| | - Binghan Xiang
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; Key Laboratory of Integrated Management of Crop Diseases and Pests (Nanjing Agricultural University), Ministry of Education, China
| | - Liyao Dong
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; Key Laboratory of Integrated Management of Crop Diseases and Pests (Nanjing Agricultural University), Ministry of Education, China.
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154
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Nansen C. An Interactive Teaching Tool Describing Resistance Evolution and Basic Economics of Insecticide-Based Pest Management. INSECTS 2022; 13:insects13020169. [PMID: 35206742 PMCID: PMC8879777 DOI: 10.3390/insects13020169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Revised: 02/01/2022] [Accepted: 02/01/2022] [Indexed: 12/04/2022]
Abstract
Simple Summary To attract bright, creative, and curious students to the academic fields of applied entomology and sustainable food production, instructors of undergraduate and graduate student courses should discuss experiences with lectures and lab sessions and share effective interactive teaching tools. This communication describes how a simple population model in an Excel spreadsheet can be used in teaching both insecticide resistance evolution and basic economics of insecticide-based pest management. A tutorial video and the model as an Excel spreadsheet are freely available. Through hands-on experience with this and similar interactive teaching tools, students will acquire fundamental knowledge about basic structures population models and they will acquire experience with quantitative data interpretation. Teachers can use this tool and accompanying tutorials to demonstrate how models can be used to describe and visualize complex interactions between insect genetics and crop management. Furthermore, data from published studies can be analyzed and discussed using this interactive teaching tool. Abstract Effective teaching of complex concepts relies heavily on the ability to establish relevance of topics and to engage students in a constructive dialogue. To connect students with abstract concepts and basic theory, instructors foster and facilitate an engaging teaching environment. Population modeling is a cornerstone in applied entomology. However, it is also a topic and skill set that requires both basic mathematical and biological knowledge, and it may be perceived by students as being abstract and exceedingly theoretical. As a way to introduce entomology students at both that undergraduate and graduate levels to hands-on experience with population modeling, a well-established and widely used deterministic genetic population model is presented as an interactive teaching tool. Moreover, the general model describes three genotypes (SS = homozygous susceptible, SR = heterozygous, and RR = homozygous resistant) during 30 discrete and univoltine generations under a shared population density dependence (carrying capacity). Based on user inputs for each genotype (survival, fitness cost, reproductive rate, emigration, and immigration) and an initial resistance allele frequency, model outputs related to resistance evolution are produced. User inputs related to insecticide-based pest management (pest density action threshold, crop damage rate, insecticide treatment costs, and profit potential) can also be introduced to examine and interpret the basic economic effects of different insect pest management scenarios. The proposed model of resistance evolution and basic economics of pest management relies on a large number of important simplifications, so it may only have limited ability to predict the outcomes of real-world (commercial) scenarios. However, as a teaching tool and to introduce students to a well-known and widely used genetic population model structure, the interactive teaching tool is believed to have considerable utility and relevance.
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Affiliation(s)
- Christian Nansen
- Department of Entomology and Nematology, University of California, Davis, CA 95616, USA
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155
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Wu D, Shen E, Jiang B, Feng Y, Tang W, Lao S, Jia L, Lin HY, Xie L, Weng X, Dong C, Qian Q, Lin F, Xu H, Lu H, Cutti L, Chen H, Deng S, Guo L, Chuah TS, Song BK, Scarabel L, Qiu J, Zhu QH, Yu Q, Timko MP, Yamaguchi H, Merotto A, Qiu Y, Olsen KM, Fan L, Ye CY. Genomic insights into the evolution of Echinochloa species as weed and orphan crop. Nat Commun 2022; 13:689. [PMID: 35115514 PMCID: PMC8814039 DOI: 10.1038/s41467-022-28359-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 01/20/2022] [Indexed: 12/20/2022] Open
Abstract
As one of the great survivors of the plant kingdom, barnyard grasses (Echinochloa spp.) are the most noxious and common weeds in paddy ecosystems. Meanwhile, at least two Echinochloa species have been domesticated and cultivated as millets. In order to better understand the genomic forces driving the evolution of Echinochloa species toward weed and crop characteristics, we assemble genomes of three Echinochloa species (allohexaploid E. crus-galli and E. colona, and allotetraploid E. oryzicola) and re-sequence 737 accessions of barnyard grasses and millets from 16 rice-producing countries. Phylogenomic and comparative genomic analyses reveal the complex and reticulate evolution in the speciation of Echinochloa polyploids and provide evidence of constrained disease-related gene copy numbers in Echinochloa. A population-level investigation uncovers deep population differentiation for local adaptation, multiple target-site herbicide resistance mutations of barnyard grasses, and limited domestication of barnyard millets. Our results provide genomic insights into the dual roles of Echinochloa species as weeds and crops as well as essential resources for studying plant polyploidization, adaptation, precision weed control and millet improvements.
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Affiliation(s)
- Dongya Wu
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Enhui Shen
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
- Zhejiang University Zhongyuan Institute, Zhengzhou, 450000, China
| | - Bowen Jiang
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Yu Feng
- Institute of Ecology, Zhejiang University, Hangzhou, 310058, China
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Wei Tang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 310006, China
| | - Sangting Lao
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Lei Jia
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Han-Yang Lin
- Institute of Ecology, Zhejiang University, Hangzhou, 310058, China
| | - Lingjuan Xie
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Xifang Weng
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Chenfeng Dong
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Qinghong Qian
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Feng Lin
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Haiming Xu
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
| | - Huabing Lu
- Institute of Maize and Upland Grain, Zhejiang Academy of Agricultural Sciences, Dongyang, 322105, China
| | - Luan Cutti
- Department of Crop Sciences, Agricultural School, Federal University of Rio Grande do Sul, Porto Alegre, RS, 91540-000, Brazil
| | - Huajun Chen
- College of Computer Science and Technology, Zhejiang University, Hangzhou, 310058, China
| | - Shuiguang Deng
- College of Computer Science and Technology, Zhejiang University, Hangzhou, 310058, China
| | - Longbiao Guo
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 310006, China
| | - Tse-Seng Chuah
- Faculty of Plantation and Agrotechnology, Universiti Teknologi MARA, 02600, Arau, Perlis, Malaysia
| | - Beng-Kah Song
- School of Science, Monash University Malaysia, 46150, Bandar Sunway, Selangor, Malaysia
| | - Laura Scarabel
- Istituto per la Protezione Sostenibile delle Piante (IPSP), CNR, Viale dell'Università, 16, 35020, Legnaro (PD), Italy
| | - Jie Qiu
- Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University, Shanghai, 200235, China
| | - Qian-Hao Zhu
- CSIRO Agriculture and Food, GPO Box 1700, Canberra, ACT, 2601, Australia
| | - Qin Yu
- Australian Herbicide Resistance Initiative, School of Agriculture and Environment, University of Western Australia, Crawley, WA, 6009, Australia
| | - Michael P Timko
- Department of Biology, University of Virginia, Charlottesville, VA, 22904, USA
| | | | - Aldo Merotto
- Department of Crop Sciences, Agricultural School, Federal University of Rio Grande do Sul, Porto Alegre, RS, 91540-000, Brazil
| | - Yingxiong Qiu
- Institute of Ecology, Zhejiang University, Hangzhou, 310058, China
| | - Kenneth M Olsen
- Department of Biology, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Longjiang Fan
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China
- Zhejiang University Zhongyuan Institute, Zhengzhou, 450000, China
| | - Chu-Yu Ye
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China.
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156
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Yu P, Marble SC. Practice in Nursery Weed Control-Review and Meta-Analysis. FRONTIERS IN PLANT SCIENCE 2022; 12:807736. [PMID: 35185957 PMCID: PMC8847678 DOI: 10.3389/fpls.2021.807736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 12/30/2021] [Indexed: 06/14/2023]
Abstract
Weeds, as one of the biggest challenges in the nursery industry, have been controlled by various methods, such as chemical and non-chemical practices. Although these practices have been widely established and tested to control weeds, there is no systematic or meta-analysis review to provide quantitative weed control efficacy information of these practices. To provide a systematic understanding of weed control practices in nursery production, a visualization research trend, a systematic review, and a meta-analysis were conducted. A total of 267 relevant studies were included for the research trend and 83 were included in the meta-analysis. The results in this study showed that interests in nursery weed control have switched dramatically in the past 2-3 decades (1995-2021) from chemical dominant weed control to chemical coexistent with non-chemical techniques. Developing new management tactics and implementing diverse combinations of integrated weed management present the future trend for weed control. The systematic review results showed that chemical methods had the highest weed control efficacy, while non-chemical had the lowest on average, nonetheless, all three weed control practices (chemical, non-chemical, and combined) reduced the weed biomass and density significantly compared with when no strategy was employed. Weed control challenges could be the catalyst for the development of new non-chemical and integrated weed control techniques.
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157
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Mohammad VH, Osborne CP, Freckleton RP. Drought exposure leads to rapid acquisition and inheritance of herbicide resistance in the weed Alopecurus myosuroides. Ecol Evol 2022; 12:e8563. [PMID: 35222951 PMCID: PMC8848470 DOI: 10.1002/ece3.8563] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 11/15/2021] [Accepted: 12/02/2021] [Indexed: 12/22/2022] Open
Abstract
Globally, herbicide resistance in weeds poses a threat to food security. Resistance evolves rapidly through the co-option of a suite of physiological mechanisms that evolved to allow plants to survive environmental stress. Consequently, we hypothesize that stress tolerance and herbicide resistance are functionally linked. We address two questions: (i) does exposure to stress in a parental generation promote the evolution of resistance in the offspring? (ii) Is such evolution mediated through non-genetic mechanisms? We exposed individuals of a grass weed to drought, and tested whether this resulted in herbicide resistance in the first generation. In terms of both survival and dry mass, we find enhanced resistance to herbicide in the offspring of parents that had been exposed to drought. Our results suggest that exposure of weeds to drought can confer herbicide resistance in subsequent generations, and that the mechanism conferring heritability of herbicide resistance is non-genetic.
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Affiliation(s)
- Vian H. Mohammad
- Department of Animal & Plant SciencesUniversity of SheffieldSheffieldUK
| | - Colin P. Osborne
- Department of Animal & Plant SciencesUniversity of SheffieldSheffieldUK
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158
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Elmore MT, Diehl KH, Di R, Chen J, Patterson EL, Brosnan JT, Trigiano RN, Tuck DP, Boggess SL, McDonald S. Identification of two Eleusine indica (goosegrass) biotypes of cool-season turfgrass resistant to dithiopyr. PEST MANAGEMENT SCIENCE 2022; 78:499-505. [PMID: 34553491 PMCID: PMC9293289 DOI: 10.1002/ps.6654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 09/15/2021] [Accepted: 09/23/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Turfgrass managers reported poor Eleusine indica control following applications of the mitosis-inhibiting herbicide dithiopyr in cool-season turfgrass. Field, glasshouse, and laboratory experiments were conducted to understand the response of these biotypes to dithiopyr and prodiamine. RESULTS In field experiments at two locations with putative dithiopyr-resistant E. indica, preemergence applications of dithiopyr provided no E. indica control. Single applications of the protoporphyrinogen oxidase (PPO)-inhibitor, oxadiazon, provided > 85% control at these locations. When subjected to agar-based bioassays, root growth of putative resistant biotypes planted with 0.01 mmol L-1 dithiopyr was slightly reduced (< 25%) whereas roots were completely inhibited in the susceptible biotype. Glasshouse whole plant rate-response experiments found that the cytochrome P450 inhibitor, piperonyl butoxide (PBO), did not increase the sensitivity of these putative resistant biotypes to dithiopyr. Sequencing of α-tubulin 1 (TUA1) revealed a Leu-136-Phe substitution in both dithiopyr-resistant populations. CONCLUSION Eleusine indica biotypes with resistance to dithiopyr are present in cool-season turfgrass systems in the United States. Resistance is possibly related to a single nucleotide polymorphism (SNP) of an α-tubulin gene. If turfgrass managers suspect resistance to dithiopyr, oxadiazon can still be an effective alternative for preemergence control. © 2021 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Matthew T Elmore
- Department of Plant BiologyRutgers, The State University of New JerseyNew BrunswickNJUSA
| | - Katherine H Diehl
- Department of Plant BiologyRutgers, The State University of New JerseyNew BrunswickNJUSA
| | - Rong Di
- Department of Plant BiologyRutgers, The State University of New JerseyNew BrunswickNJUSA
| | - Jinyi Chen
- Department of Plant, Soil and Microbial SciencesMichigan State UniversityEast LansingMIUSA
| | - Eric L Patterson
- Department of Plant, Soil and Microbial SciencesMichigan State UniversityEast LansingMIUSA
| | - James T Brosnan
- Plant Sciences DepartmentThe University of TennesseeKnoxvilleTNUSA
| | - Robert N Trigiano
- Department of Entomology and Plant PathologyThe University of TennesseeKnoxvilleTNUSA
| | - Daniel P Tuck
- Department of Plant BiologyRutgers, The State University of New JerseyNew BrunswickNJUSA
| | - Sarah L Boggess
- Department of Entomology and Plant PathologyThe University of TennesseeKnoxvilleTNUSA
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159
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Widianto R, Kurniadie D, Widayat D, Umiyati U, Nasahi C, Sari S, Juraimi AS, Kato-Noguchi H. Acetolactate Synthase-Inhibitor Resistance in Monochoria vaginalis (Burm. f.) C. Presl from Indonesia. PLANTS (BASEL, SWITZERLAND) 2022; 11:400. [PMID: 35161381 PMCID: PMC8838510 DOI: 10.3390/plants11030400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 01/27/2022] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
Abstract
Monochoria vaginalis (Burm. f.) C. Presl, belonging to the family Pontederiaceae, is an aquatic herbaceous plant, native to temperate and tropical Asia. The species often occurs in paddy fields as a noxious weed in East Asia, and in the USA, and causes a significant reduction in rice production. The objective of the present research was the evaluation of the resistance levels of M. vaginalis against three chemical groups of acetolactate synthase (ALS)-inhibitor herbicides and other two different groups of herbicides, and the investigation of the mutations in the ALS gene of the resistant biotype of M. vaginalis. Herbicide dose-response experiments showed that the resistant biotype of M. vaginalis was highly resistant to bensulfuron-methyl, moderately resistant to bispyribac-sodium, had low resistance to penoxsulam and 2,4-D dimethyl ammonium, and was susceptible to sulfentrazone. The nucleotide sequences of the ALS gene of resistant and susceptible biotypes showed 14 base substitutions, which caused two amino acid substitutions: Val-143-Ile and Val-148-Ile. It is the first report of the substitutions of amino acids Val-143-Ile and Val-148-Ile in ALS protein. Those mutations may give different resistance spectra against three ALS-inhibitor herbicides: bensulfuron-methyl, bispyribac-sodium, and penoxsulam. Further research is needed to elucidate the molecular basis of target-site resistance mechanisms such as the transformation of the ALS gene of M. vaginalis. It is also necessary to evaluate herbicide mixtures and/or the rotation of herbicide sites of action to control the resistant biotype of M. vaginalis.
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Affiliation(s)
- Ryan Widianto
- Department of Agronomy, Faculty of Agriculture, Universitas Padjadjaran, Jl. Raya, Bandung Sumedang Km 21, Jatinangor, Sumedang 45363, Jawa Barat, Indonesia; (R.W.); (D.W.); (U.U.); (S.S.)
| | - Denny Kurniadie
- Department of Agronomy, Faculty of Agriculture, Universitas Padjadjaran, Jl. Raya, Bandung Sumedang Km 21, Jatinangor, Sumedang 45363, Jawa Barat, Indonesia; (R.W.); (D.W.); (U.U.); (S.S.)
| | - Dedi Widayat
- Department of Agronomy, Faculty of Agriculture, Universitas Padjadjaran, Jl. Raya, Bandung Sumedang Km 21, Jatinangor, Sumedang 45363, Jawa Barat, Indonesia; (R.W.); (D.W.); (U.U.); (S.S.)
| | - Uum Umiyati
- Department of Agronomy, Faculty of Agriculture, Universitas Padjadjaran, Jl. Raya, Bandung Sumedang Km 21, Jatinangor, Sumedang 45363, Jawa Barat, Indonesia; (R.W.); (D.W.); (U.U.); (S.S.)
| | - Ceppy Nasahi
- Department of Pest and Diseases, Faculty of Agriculture, Universitas Padjadjaran, Jl. Raya, Bandung Sumedang Km 21, Jatinangor, Sumedang 45363, Jawa Barat, Indonesia;
| | - Santika Sari
- Department of Agronomy, Faculty of Agriculture, Universitas Padjadjaran, Jl. Raya, Bandung Sumedang Km 21, Jatinangor, Sumedang 45363, Jawa Barat, Indonesia; (R.W.); (D.W.); (U.U.); (S.S.)
| | - Abdul Shukor Juraimi
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia;
| | - Hisashi Kato-Noguchi
- Department of Applied Biological Science, Faculty of Agriculture, Kagawa University, Miki 761-0795, Kagawa, Japan
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John BK, Abraham T, Mathew B. A Review on Characterization Techniques for Carbon Quantum Dots and Their Applications in Agrochemical Residue Detection. J Fluoresc 2022; 32:449-471. [DOI: 10.1007/s10895-021-02852-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 11/22/2021] [Indexed: 01/20/2023]
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161
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Kreiner JM, Sandler G, Stern AJ, Tranel PJ, Weigel D, Stinchcombe J, Wright SI. Repeated origins, widespread gene flow, and allelic interactions of target-site herbicide resistance mutations. eLife 2022; 11:70242. [PMID: 35037853 PMCID: PMC8798060 DOI: 10.7554/elife.70242] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 01/16/2022] [Indexed: 11/13/2022] Open
Abstract
Causal mutations and their frequency in agricultural fields are well-characterized for herbicide resistance. However, we still lack understanding of their evolutionary history: the extent of parallelism in the origins of target-site resistance (TSR), how long these mutations persist, how quickly they spread, and allelic interactions that mediate their selective advantage. We addressed these questions with genomic data from 19 agricultural populations of common waterhemp (Amaranthus tuberculatus), which we show to have undergone a massive expansion over the past century, with a contemporary effective population size estimate of 8 x 107. We found variation at seven characterized TSR loci, two of which had multiple amino acid substitutions, and three of which were common. These three common resistance variants show extreme parallelism in their mutational origins, with gene flow having shaped their distribution across the landscape. Allele age estimates supported a strong role of adaptation from de novo mutations, with a median age of 30 suggesting that most resistance alleles arose soon after the onset of herbicide use. However, resistant lineages varied in both their age and evidence for selection over two different timescales, implying considerable heterogeneity in the forces that govern their persistence. Two such forces are intra- and inter-locus allelic interactions; we report a signal of extended haplotype competition between two common TSR alleles, and extreme linkage with genome-wide alleles with known functions in resistance adaptation. Together, this work reveals a remarkable example of spatial parallel evolution in a metapopulation, with important implications for the management of herbicide resistance.
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Affiliation(s)
- Julia M Kreiner
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
| | - George Sandler
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
| | - Aaron J Stern
- Graduate Group in Computational Biology, University of California, Berkeley, Berkeley, United States
| | - Patrick J Tranel
- Department of Crop Sciences, University of Illinois Urbana-Champaign, Urbana, United States
| | - Detlef Weigel
- Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany
| | - John Stinchcombe
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
| | - Stephen Isaac Wright
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
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162
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Hwang JI, Norsworthy JK, González-Torralva F, Piveta LB, Priess GL, Barber LT, Butts TR. Absorption, translocation, and metabolism of florpyrauxifen-benzyl and cyhalofop-butyl in cyhalofop-butyl-resistant barnyardgrass [Echinochloa crus-galli (L.) P. Beauv.]. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2022; 180:104999. [PMID: 34955183 DOI: 10.1016/j.pestbp.2021.104999] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Revised: 11/08/2021] [Accepted: 11/18/2021] [Indexed: 06/14/2023]
Abstract
Dose-response experiments were conducted to assess the sensitivity of one susceptible and three putative resistant (R1, R2, and R3) barnyardgrass [Echinochloa crus-galli (L.) P. Beauv.] biotypes to florpyrauxifen-benzyl and cyhalofop-butyl alone and as a formulated premix. Subsequently, potential resistance mechanisms of the barnyardgrass were evaluated. Based on biomass reduction results, resistant/susceptible ratios were calculated for R1 (7.0-50), R2 (7.0-150), and R3 (18-214) biotypes. Absorption and translocation of [14C]-florpyrauxifen-benzyl decreased in R1 and R3 biotypes, but not for [14C]-cyhalofop-butyl. The metabolism of [14C]-florpyrauxifen-benzyl to [14C]-florpyrauxifen-acid was >2-fold less in resistant biotypes (9-11%) than in the susceptible biotype (23%). Moreover, the production of [14C]-florpyrauxifen-acid in susceptible barnyardgrass (not in the R biotypes) increased 3-fold when florpyrauxifen-benzyl and cyhalofop-butyl were applied in mixture compared to florpyrauxifen-benzyl applied alone. The tested barnyardgrass biotypes had no mutation in the Transport Inhibitor Response1, auxin-signaling F-box, and acetyl coenzyme A carboxylase genes. Although further studies on cyhalofop-butyl resistance with respect to analysis of specific metabolites are needed, our findings in this study demonstrates that the evolution of florpyrauxifen-benzyl resistance in multiple resistant barnyardgrass can be related to non-target-site resistance mechanisms reducing absorption and translocation of the herbicide and causing reduced conversion or rapid degradation of florpyrauxifen-acid.
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Affiliation(s)
- Jeong-In Hwang
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72704, USA.
| | - Jason K Norsworthy
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72704, USA
| | - Fidel González-Torralva
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72704, USA
| | - Leonard B Piveta
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72704, USA
| | - Grant L Priess
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72704, USA
| | - L Tom Barber
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72704, USA
| | - Thomas R Butts
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72704, USA
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163
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Wang J, Cao W, Guo Q, Yang Y, Bai L, Pan L. Resistance to mesosulfuron-methyl in Beckmannia syzigachne may involve ROS burst and non-target-site resistance mechanisms. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 229:113072. [PMID: 34922171 DOI: 10.1016/j.ecoenv.2021.113072] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2021] [Revised: 12/03/2021] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
Abstract
Herbicide resistance to chemical herbicide is a global issue that presents an ongoing threat to grain production. Though it has been frequently implicated that the production of detoxification enzymes increased in resistance development, the mechanisms for overexpression of these genes employed by herbicide-resistant weeds remain complicated. In this study, a mesosulfuron-methyl resistant Beckmannia syzigachne population (R) was found to be cross-resistant to another herbicide pyriminobac-methyl. No known target-site mutations were detected in the R population. In contrast, the decreased uptake and enhanced metabolic rates of mesosulfuron-methyl were detected in the R than the susceptible (S) population. Two candidate ATP-binding cassette (ABC) transporter genes (ABCB25 and ABCC14) that were constitutively up-regulated in the R population were identified by RNA-sequencing and validated by RT-qPCR. Alteration of antioxidant enzyme activities and gene expressions implied that mesosulfuron-methyl-induced antioxidant defenses provoked reactive oxygen species (ROS) burst. ROS scavenger assay showed that ROS induces ABCB25 and ABCC14 expression. This study reported for the first time that ABC transporters mediated non-target-site resistance contributes to mesosulfuron-methyl resistance in a B. syzigachne population, and implicated that ROS burst might be involved in the overexpression of ABC transporter genes in weeds.
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Affiliation(s)
- Junzhi Wang
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China; Hunan Academy of Agricultural Sciences, Changsha 410125, China; Longping Branch, Graduate School of Hunan University, Changsha 410125, China
| | - Wanfen Cao
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China
| | - Qiushuang Guo
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China
| | - Yang Yang
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China
| | - Lianyang Bai
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China; Hunan Academy of Agricultural Sciences, Changsha 410125, China; Longping Branch, Graduate School of Hunan University, Changsha 410125, China.
| | - Lang Pan
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
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164
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Hwang JI, Norsworthy JK, González-Torralva F, Priess GL, Barber LT, Butts TR. Non-target-site resistance mechanism of barnyardgrass [Echinochloa crus-galli (L.) P. Beauv.] to florpyrauxifen-benzyl. PEST MANAGEMENT SCIENCE 2022; 78:287-295. [PMID: 34482604 DOI: 10.1002/ps.6633] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/26/2021] [Accepted: 09/05/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Florpyrauxifen-benzyl (FPB) is an arylpicolinate herbicide (Group IV) for barnyardgrass control in rice. One susceptible (Sus) and three putative FPB-resistant (R1, R2, and R3) barnyardgrass biotypes were selected based on resistant/susceptible (R/S) ratios obtained from dose-response tests and used to investigate the potential resistance mechanisms. RESULTS Based on visual control results, the R/S ratios of barnyardgrass biotypes R1, R2, and R3 were 60-, 33-, and 16-fold greater than the Sus standard, respectively. Sequencing results of TIR1 and AFB genes in the tested barnyardgrass revealed no difference between Sus and R barnyardgrass biotypes. Absorption of [14 C]-FPB in Sus barnyardgrass increased over time and reached 90%, which was >10 percentage points greater than that in R biotypes. The [14 C]-FPB absorption in all R barnyardgrass equilibrated after 48 h. For both Sus and R barnyardgrass, most [14 C]-FPB absorbed was present in the treated leaf (79.8-88.8%), followed by untreated aboveground (9.5-18.6%) and belowground tissues (1.3-2.2%). No differences in translocation were observed. Differences between Sus and R barnyardgrass biotypes were found for FPB metabolism. Production of the active metabolite, florpyrauxifen-acid, was greater in Sus barnyardgrass (21.5-52.1%) than in R barnyardgrass (5.5-34.9%). CONCLUSION In conclusion, reductions in FPB absorption and florpyrauxifen-acid production may contribute to the inability to control barnyardgrass with FPB. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Jeong-In Hwang
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Jason K Norsworthy
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Fidel González-Torralva
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Grant L Priess
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, USA
| | - L Tom Barber
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Thomas R Butts
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, USA
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165
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Ramos SE, Rzodkiewicz LD, Turcotte MM, Ashman TL. Damage and recovery from drift of synthetic-auxin herbicide dicamba depends on concentration and varies among floral, vegetative, and lifetime traits in rapid cycling Brassica rapa. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 801:149732. [PMID: 34438156 DOI: 10.1016/j.scitotenv.2021.149732] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Revised: 08/04/2021] [Accepted: 08/13/2021] [Indexed: 06/13/2023]
Abstract
Herbicides can drift from intended plants onto non-target species. It remains unclear how drift impacts plant functional traits that are important for fitness. To address this gap, we conducted an experiment where fast cycling Brassica rapa plants were exposed to one of three drift concentrations (0.5%, 1%, 10%) of synthetic-auxin dicamba. We evaluated damage to and capacity of floral and vegetative traits to recover as well as lifetime fitness by comparing treated plants to controls. Response to dicamba exposure was concentration-dependent across all traits but varied with trait type. At 0.5% dicamba, three out of five floral traits were affected, while at 1% dicamba, four floral traits and one out of two vegetative traits were negatively impacted. At 10% dicamba all floral and vegetative traits were stunted. Overall, floral traits were more responsive to all dicamba drift concentrations than vegetative traits and displayed a wide range of variation ranging from no response (e.g., pistil length) to up to 84% reduction (ovule number). However, despite floral traits were more affected across the dicamba drift concentrations they were also more likely to recover than the vegetative traits. There was also variation among lifetime traits; the onset of flowering was delayed, and reproductive fitness was negatively affected in a concentration-dependent manner, but the final biomass and total flower production were not affected. Altogether, we show substantial variation across plant traits in their response to dicamba and conclude that accounting for this variation is essential to understand the full impact of herbicide drift on plants and the ecological interactions these traits mediate.
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Affiliation(s)
- Sergio E Ramos
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
| | - Lacey D Rzodkiewicz
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA
| | - Martin M Turcotte
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA
| | - Tia-Lynn Ashman
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA
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166
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Palma-Bautista C, Vázquez-García JG, Domínguez-Valenzuela JA, Ferreira Mendes K, Alcántara de la Cruz R, Torra J, De Prado R. Non-Target-Site Resistance Mechanisms Endow Multiple Herbicide Resistance to Five Mechanisms of Action in Conyza bonariensis. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:14792-14801. [PMID: 34852464 DOI: 10.1021/acs.jafc.1c04279] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The repeated use of herbicides can lead to the selection of multiple resistance weeds. Some populations of Conyza bonariensis occurring in olive groves from southern Spain have developed resistance to various herbicides. This study determined the resistance levels to 2,4-D, glyphosate, diflufenican, paraquat, and tribenuron-methyl in a putative resistant (R) C. bonariensis population, and the possible non-target-site resistance (NTSR) mechanisms involved were characterized. Resistance factors varied as follows: glyphosate (8.9), 2,4-D (4.8), diflufenican (5.0), tribenuron-methyl (19.6), and paraquat (85.5). Absorption of 14C-glyphosate was up to 25% higher in the susceptible (S) population compared to the R one, but 14C-paraquat absorption was similar (up to 70%) in both populations. S plants translocated more than 60% of both 14C-glyphosate and 14C-paraquat toward shoots and roots, while R plants translocated less than 10%. The R population was able to metabolize 57% of the 2,4-D into nontoxic metabolites and 68% of the tribenuron-methyl into metsulfuron-methyl (10%), metsulfuron-methyl-hydroxylate (18%), and conjugate-metsulfuron-methyl (40%). Among the NTSR mechanisms investigated, absorption and translocation could be involved in glyphosate resistance, but only translocation for paraquat. Proofs of the presence of enhanced metabolism as a resistance mechanism were found for tribenuron-methyl and 2,4-D, but not for diflufenican. This research informs the first occurrence of multiple resistance to five herbicide classes (acetolactate synthase inhibitors, 5-enolpyruvylshikimate-3-phosphate synthase inhibitors, photosystem I electron diverters, photosystem II inhibitors, and synthetic auxin herbicides) in C. bonariensis.
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Affiliation(s)
- Candelario Palma-Bautista
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Cordoba, 14014 Córdoba, Spain
| | - José G Vázquez-García
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Cordoba, 14014 Córdoba, Spain
| | | | - Kassio Ferreira Mendes
- Departamento de Agronomia, Universidade Federal de Viçosa, Viçosa 36570-900, Minas Gerais, Brazil
| | | | - Joel Torra
- Department d'Hortofruticultura, Botànica i Jardineria, Agrotecnio, Universitat de Lleida, 25198 Lleida, Spain
| | - Rafael De Prado
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Cordoba, 14014 Córdoba, Spain
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167
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Yang J, Yu H, Cui H, Chen J, Li X. High Antioxidant Ability Confer Resistance to Atrazine in Commelina communis L. PLANTS (BASEL, SWITZERLAND) 2021; 10:2685. [PMID: 34961156 PMCID: PMC8707497 DOI: 10.3390/plants10122685] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/01/2021] [Accepted: 12/02/2021] [Indexed: 11/16/2022]
Abstract
Asiatic dayflower (Commelina communis L.) is a detrimental weed that mainly infests corn and soybean fields in China. Recently, some C. communis populations have exhibited resistance to atrazine, intensifying the difficulties in controlling the weed. However, little is known on the mechanism underlying C. communis resistance to atrazine. Therefore, two populations collected from Jilin (JL-1) and Jiangsu (JS-10) provinces of China were used to evaluate their growth responses to atrazine. The results showed that the JL-1 population displayed a low level of resistance to atrazine compared with JS-10 population, with the resistant index (RI) value of 2.9. To determine if a mutation in the psbA gene was the basis for varied resistance to this herbicide, the full-length gene encoding 353 amino acids with no intron was sequenced by using genome-walking techniques. No mutation known to confer resistance to atrazine was observed in either JL-1 or JS-10 populations. The malondialdehyde (MDA) contents relative to the control group were significantly higher in JS-10 population than in JL-1 population at 7 days after treatment with atrazine, suggesting that atrazine induced severer oxidant damage on JS-10 population. Additionally, significantly enhanced activities of antioxidant enzymes, including superoxide dismutase (SOD), catalase (CAT), peroxidase (POD) and ascorbate peroxidase (APX), were detected in the JL-1 population, which was most likely to confer resistance to atrazine. To the best of our knowledge, this is the first investigation into the potential genetic and enzymatic differences contributing to atrazine resistance in this population.
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Affiliation(s)
- Juan Yang
- Key Laboratory of Weed Biology and Management, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (J.Y.); (H.Y.); (H.C.); (J.C.)
- Hebei Key Laboratory of Crop Stress Biology (in Preparation), Hebei Normal University of Science and Technology, Qinhuangdao 066004, China
| | - Haiyan Yu
- Key Laboratory of Weed Biology and Management, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (J.Y.); (H.Y.); (H.C.); (J.C.)
| | - Hailan Cui
- Key Laboratory of Weed Biology and Management, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (J.Y.); (H.Y.); (H.C.); (J.C.)
| | - Jingchao Chen
- Key Laboratory of Weed Biology and Management, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (J.Y.); (H.Y.); (H.C.); (J.C.)
| | - Xiangju Li
- Key Laboratory of Weed Biology and Management, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (J.Y.); (H.Y.); (H.C.); (J.C.)
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168
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Gonsiorkiewicz Rigon CA, Cutti L, Angonese PS, Sulzbach E, Markus C, Gaines TA, Merotto A. The safener isoxadifen does not increase herbicide resistance evolution in recurrent selection with fenoxaprop. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 313:111097. [PMID: 34763850 DOI: 10.1016/j.plantsci.2021.111097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 10/14/2021] [Accepted: 10/18/2021] [Indexed: 06/13/2023]
Abstract
Safeners are chemical compounds used to improve selectivity and safety of herbicides in crops by activating genes that enhance herbicide metabolic detoxification. The genes activated by safeners in crops are similar to the genes causing herbicide resistance through increased metabolism in weeds. This work investigated the effect of the safener isoxadifen-ethyl (IS) in combination with fenoxaprop-p-ethyl (FE) on the evolution of herbicide resistance in Echinochloa crus-galli under recurrent selection. Reduced susceptibility was observed in the progeny after recurrent selection with both FE alone and with FE + IS for two generations (G2) compared to the parental population (G0). The resistance index found in G2 after FE + IS selection was similar as when FE was used alone, demonstrating that the safener did not increase the rate or magnitude of herbicide resistance evolution. G2 progeny selected with FE alone and the combination of FE + IS had increased survival to herbicides from other mechanisms of action relative to the parental G0 population. One biotype of G2 progeny had increased constitutive expression of glutathione-S-transferase (GST1) after recurrent selection with FE + IS. G2 progeny had increased expression of two P450 genes (CYP71AK2 and CYP72A122) following treatment with FE, while G2 progeny had increased expression of five P450 genes (CYP71AK2, CYP72A258, CYP81A12, CYP81A14 and CYP81A21) after treatment with FE + IS. Repeated selection with low doses of FE with or without the safener IS decreased E. crus-galli control and showed potential for cross-resistance evolution. Addition of safener did not further decrease herbicide sensitivity in second generation progeny; however, the recurrent use of safener in combination with FE resulted in safener-induced increased expression of several CYP genes. This is the first report using safener as an additional factor to study herbicide resistance evolution in weeds under experimental recurrent selection.
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Affiliation(s)
| | - Luan Cutti
- Department of Crop Science, Federal University of Rio Grande do Sul, Av. Bento Goncalves, Porto Alegre, 91540-000, Brazil.
| | - Paula Sinigaglia Angonese
- Department of Crop Science, Federal University of Rio Grande do Sul, Av. Bento Goncalves, Porto Alegre, 91540-000, Brazil.
| | - Estéfani Sulzbach
- Department of Crop Science, Federal University of Rio Grande do Sul, Av. Bento Goncalves, Porto Alegre, 91540-000, Brazil.
| | - Catarine Markus
- Department of Crop Science, Federal University of Rio Grande do Sul, Av. Bento Goncalves, Porto Alegre, 91540-000, Brazil
| | - Todd A Gaines
- Department of Agricultural Biology, Colorado State University, 1177 Campus Delivery, Fort Collins, CO, 80523, USA.
| | - Aldo Merotto
- Department of Crop Science, Federal University of Rio Grande do Sul, Av. Bento Goncalves, Porto Alegre, 91540-000, Brazil.
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169
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Kaundun SS, Downes J, Jackson LV, Hutchings SJ, Mcindoe E. Impact of a Novel W2027L Mutation and Non-Target Site Resistance on Acetyl-CoA Carboxylase-Inhibiting Herbicides in a French Lolium multiflorum Population. Genes (Basel) 2021; 12:genes12111838. [PMID: 34828444 PMCID: PMC8620607 DOI: 10.3390/genes12111838] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 11/18/2021] [Accepted: 11/18/2021] [Indexed: 11/24/2022] Open
Abstract
Herbicides that inhibit acetyl-CoA carboxylase (ACCase) are among the few remaining options for the post-emergence control of Lolium species in small grain cereal crops. Here, we determined the mechanism of resistance to ACCase herbicides in a Lolium multiflorum population (HGR) from France. A combined biological and molecular approach detected a novel W2027L ACCase mutation that affects aryloxyphenoxypropionate (FOP) but not cyclohexanedione (DIM) or phenylpyraxoline (DEN) subclasses of ACCase herbicides. Both the wild-type tryptophan and mutant leucine 2027-ACCase alleles could be positively detected in a single DNA-based-derived polymorphic amplified cleaved sequence (dPACS) assay that contained the targeted PCR product and a cocktail of two discriminating restriction enzymes. Additionally, we identified three well-characterised I1781L, I2041T, and D2078G ACCase target site resistance mutations as well as non-target site resistance in HGR. The non-target site component endowed high levels of resistance to FOP herbicides whilst partially impacting on the efficacy of pinoxaden and cycloxydim. This study adequately assessed the contribution of the W2027L mutation and non-target site mechanism in conferring resistance to ACCase herbicides in HGR. It also highlights the versatility and robustness of the dPACS method to simultaneously identify different resistance-causing alleles at a single ACCase codon.
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170
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Wrzesińska B, Kościelniak K, Frąckowiak P, Praczyk T, Obrępalska-Stęplowska A. The analysis of reference genes expression stability in susceptible and resistant Apera spica-venti populations under herbicide treatment. Sci Rep 2021; 11:22145. [PMID: 34772993 PMCID: PMC8589970 DOI: 10.1038/s41598-021-01615-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 11/01/2021] [Indexed: 11/28/2022] Open
Abstract
Weed resistance to herbicides constitutes a serious problem to world crop production. One of the weeds that are significantly threatening the crops’ yield and quality is Apera spica-venti. The target-site resistance (TSR) mechanism of A. spica-venti has been widely studied, though, little is known about its non-target-site resistance (NTSR) mechanisms at the molecular level. Molecular examination of NTSR is, to a great extent, based on the expression profiles of selected genes, e.g. those participating in detoxification. However, to obtain reliable results of gene expression analysis, the use of a normalizer is required. The aim of this study was to select the best reference genes in A. spica-venti plants of both populations, susceptible and resistant to ALS inhibitor, under treatment with herbicide. Eleven housekeeping genes were chosen for their expression stability assessment. The efficiency correction of raw quantification cycles (Cq) was included in the gene expression stability analyses, which resulted in indicating the TATA-box binding protein (TBP), glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC), and peptidyl-prolyl cis–trans isomerase CYP28 (CYP28) genes as the most stably expressed reference genes. The obtained results are of vital importance for future studies on the expression of genes associated with the non-target-site resistance mechanisms in the A. spica-venti populations susceptible and resistant to herbicides.
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Affiliation(s)
- Barbara Wrzesińska
- Department of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland
| | - Karolina Kościelniak
- Department of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland
| | - Patryk Frąckowiak
- Department of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland
| | - Tadeusz Praczyk
- Department of Weed Science and Plant Protection Techniques, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland
| | - Aleksandra Obrępalska-Stęplowska
- Department of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland.
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171
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Yuan H, Wang Y, Liu Y, Zhang M, Zou Z. A novel dominant selection system for plant transgenics based on phosphite metabolism catalyzed by bacterial alkaline phosphatase. PLoS One 2021; 16:e0259600. [PMID: 34735551 PMCID: PMC8568168 DOI: 10.1371/journal.pone.0259600] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Accepted: 10/21/2021] [Indexed: 11/19/2022] Open
Abstract
Selective markers are generally indispensable in plant genetic transformation, of which the frequently used are of antibiotic or herbicide resistance. However, the increasing concerns on transgenic biosafety have encouraged many new and safe selective markers emerging, with an eminent representative as phosphite (Phi) in combination to its dehydrogenase (PTDH, e.g. PtxD). As bacterial alkaline phosphatase (BAP) can resemble PtxD to oxidatively convert toxic Phi into metabolizable phosphate (Pi), herein we harnessed it as the substitute of PtxD to develop an alternative Phi-based selection system. We first validated the Escherichia coli BAP (EcBAP) did own an extra enzymatic activity of oxidizing Phi to Pi. We further revealed EcBAP could be used as a dominant selective marker for Agrobacterium-mediated tobacco transformation. Although the involved Phi selection for transformed tobacco cells surprisingly required the presence of Pi, it showed a considerable transformation efficiency and dramatically accelerated transformation procedure, as compared to the routine kanamycin selection and the well-known PtxD/Phi system. Moreover, the EcBAP transgenic tobaccos could metabolize toxic Phi as a phosphorus (P) fertilizer thus underlying Phi-resistance, and competitively possess a dominant growth over wild-type tobacco and weeds under Phi stress. Therefore, this novel BAP/Phi-coupled system, integrating multiple advantages covering biosafe dominant selective marker, plant P utilization and weed management, can provide a PTDH-bypass technological choice to engineer transgenic plant species, especially those of great importance for sustainable agriculture.
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Affiliation(s)
- Hang Yuan
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, School of Life Sciences, Yunnan Normal University, Kunming, Yunnan, China
| | - Yuxian Wang
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, School of Life Sciences, Yunnan Normal University, Kunming, Yunnan, China
| | - Yanjuan Liu
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, School of Life Sciences, Yunnan Normal University, Kunming, Yunnan, China
| | - Mengru Zhang
- NHC Key Laboratory of Drug Addiction Medicine, The First Affiliated Hospital, Kunming Medical University, Kunming, Yunnan, China
| | - Zhurong Zou
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, School of Life Sciences, Yunnan Normal University, Kunming, Yunnan, China
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172
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Schwarz M, Eno RFM, Freitag-Pohl S, Coxon CR, Straker HE, Wortley DJ, Hughes DJ, Mitchell G, Moore J, Cummins I, Onkokesung N, Brazier-Hicks M, Edwards R, Pohl E, Steel PG. Flavonoid-based inhibitors of the Phi-class glutathione transferase from black-grass to combat multiple herbicide resistance. Org Biomol Chem 2021; 19:9211-9222. [PMID: 34643629 PMCID: PMC8564858 DOI: 10.1039/d1ob01802g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 09/30/2021] [Indexed: 12/24/2022]
Abstract
The evolution and growth of multiple-herbicide resistance (MHR) in grass weeds continues to threaten global cereal production. While various processes can contribute to resistance, earlier work has identified the phi class glutathione-S-transferase (AmGSTF1) as a functional biomarker of MHR in black-grass (Alopecurus myosuroides). This study provides further insights into the role of AmGSTF1 in MHR using a combination of chemical and structural biology. Crystal structures of wild-type AmGSTF1, together with two specifically designed variants that allowed the co-crystal structure determination with glutathione and a glutathione adduct of the AmGSTF1 inhibitor 4-chloro-7-nitro-benzofurazan (NBD-Cl) were obtained. These studies demonstrated that the inhibitory activity of NBD-Cl was associated with the occlusion of the active site and the impediment of substrate binding. A search for other selective inhibitors of AmGSTF1, using ligand-fishing experiments, identified a number of flavonoids as potential ligands. Subsequent experiments using black-grass extracts discovered a specific flavonoid as a natural ligand of the recombinant enzyme. A series of related synthetic flavonoids was prepared and their binding to AmGSTF1 was investigated showing a high affinity for derivatives bearing a O-5-decyl-α-carboxylate. Molecular modelling based on high-resolution crystal structures allowed a binding pose to be defined which explained flavonoid binding specificity. Crucially, high binding affinity was linked to a reversal of the herbicide resistance phenotype in MHR black-grass. Collectively, these results present a nature-inspired new lead for the development of herbicide synergists to counteract MHR in weeds.
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Affiliation(s)
- Maria Schwarz
- Department of Chemistry, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK.
| | - Rebecca F M Eno
- Department of Chemistry, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK.
| | - Stefanie Freitag-Pohl
- Department of Chemistry, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK.
| | - Christopher R Coxon
- Department of Chemistry, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK.
| | - Hannah E Straker
- Department of Chemistry, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK.
| | - David J Wortley
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, UK
| | - David J Hughes
- Syngenta, Jealott's Hill International Research Station, Bracknell, Berks RG42 6EY, UK
| | - Glynn Mitchell
- Syngenta, Jealott's Hill International Research Station, Bracknell, Berks RG42 6EY, UK
| | - Jenny Moore
- Syngenta, Jealott's Hill International Research Station, Bracknell, Berks RG42 6EY, UK
| | - Ian Cummins
- Department of Biosciences, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK
| | - Nawaporn Onkokesung
- Agriculture, School of Natural and Environmental Sciences, Newcastle University, Newcastle-upon-Tyne, NE1 7RU, UK
| | - Melissa Brazier-Hicks
- Agriculture, School of Natural and Environmental Sciences, Newcastle University, Newcastle-upon-Tyne, NE1 7RU, UK
| | - Robert Edwards
- Agriculture, School of Natural and Environmental Sciences, Newcastle University, Newcastle-upon-Tyne, NE1 7RU, UK
| | - Ehmke Pohl
- Department of Chemistry, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK.
- Department of Biosciences, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK
| | - Patrick G Steel
- Department of Chemistry, University of Durham, Science Laboratories, South Road, Durham, DH1 3LE, UK.
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173
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Huang Z, Lu Z, Huang H, Li W, Cao Y, Wei S. Target site mutations and cytochrome P450s-involved metabolism confer resistance to nicosulfuron in green foxtail (Setaria viridis). PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2021; 179:104956. [PMID: 34802535 DOI: 10.1016/j.pestbp.2021.104956] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 08/18/2021] [Accepted: 08/19/2021] [Indexed: 06/13/2023]
Abstract
Green foxtail [Setaria viridis (L.) P.Beauv.] is a troublesome grass weed that is widely distributed in maize (Zea mays L.) fields across China. Many populations of S. viridis have evolved resistance to the acetolactate synthase (ALS)-inhibiting herbicide nicosulfuron. The objectives of this research were to confirm nicosulfuron resistance in these populations and to investigate the basis of nicosulfuron resistance. Whole-plant dose-response experiments showed 6 out of 13 S. viridis populations were highly resistance (20-30 times) to nicosulfuron. Sequencing of the ALS gene revealed two amino acid mutations, Asp-376-Glu and Pro-197-Ala, in the nicosulfuron-resistant populations. A malathion pretreatment study revealed that the R376 and R197 subpopulations might have cytochrome P450s-mediated herbicide metabolic resistance. The resistant populations were cross-resistant to imazethapyr but sensitive to topramezone and quizalofop-p-ethyl. This is the first report of resistance to ALS inhibitors conferred by target site mutations (Asp-376-Glu or Pro-197-Ser) and possible cytochrome P450s-involved metabolism in S. viridis.
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Affiliation(s)
- Zhaofeng Huang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Zongzhi Lu
- Institute of Plant Protection, Jilin Academy of Agricultural Sciences, Changchun 130033, China
| | - Hongjuan Huang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Wenyu Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Yi Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Shouhui Wei
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
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174
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Gaines TA, Slavov GT, Hughes D, Küpper A, Sparks CD, Oliva J, Vila-Aiub MM, Garcia MA, Merotto A, Neve P. Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America. Mol Ecol 2021; 30:5360-5372. [PMID: 34637174 DOI: 10.1111/mec.16221] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 08/04/2021] [Accepted: 09/15/2021] [Indexed: 11/29/2022]
Abstract
The global invasion, and subsequent spread and evolution of weeds provides unique opportunities to address fundamental questions in evolutionary and invasion ecology. Amaranthus palmeri is a widespread glyphosate-resistant (GR) weed in the USA. Since 2015, GR populations of A. palmeri have been confirmed in South America, raising questions about introduction pathways and the importance of pre- vs. post-invasion evolution of GR traits. We used RAD-sequencing genotyping to characterize genetic structure of populations from Brazil, Argentina, Uruguay and the USA. We also quantified gene copy number of the glyphosate target, 5-enolpyruvyl-3-shikimate phosphate synthase (EPSPS), and the presence of an extrachromosomal circular DNA (eccDNA) replicon known to confer glyphosate resistance in USA populations. Populations in Brazil, Argentina and Uruguay were only weakly differentiated (pairwise FST ≤0.043) in comparison to USA populations (mean pairwise FST =0.161, range =0.068-0.258), suggesting a single major invasion event. However, elevated EPSPS copy number and the EPSPS replicon were identified in all populations from Brazil and Uruguay, but only in a single Argentinean population. These observations are consistent with independent in situ evolution of glyphosate resistance in Argentina, followed by some limited recent migration of the eccDNA-based mechanism from Brazil to Argentina. Taken together, our results are consistent with an initial introduction of A. palmeri into South America sometime before the 1980s, and local evolution of GR in Argentina, followed by a secondary invasion of GR A. palmeri with the unique eccDNA-based mechanism from the USA into Brazil and Uruguay during the 2010s.
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Affiliation(s)
- Todd A Gaines
- Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
| | - Gancho T Slavov
- Rothamsted Research, West Common, Harpenden, Hertfordshire, UK
- Scion, Rotorua, New Zealand
| | - David Hughes
- Rothamsted Research, West Common, Harpenden, Hertfordshire, UK
| | - Anita Küpper
- Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
- Crop Science Division, Weed Control, Bayer AG, Frankfurt am Main, Germany
| | - Crystal D Sparks
- Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
| | - Julian Oliva
- Protección Vegetal-FCA, Universidad Católica de Córdoba (UCC), Córdoba, Argentina
| | - Martin M Vila-Aiub
- IFEVA - CONICET - Faculty of Agronomy, Department of Ecology, University of Buenos Aires (UBA), Buenos Aires, Argentina
| | - M Alejandro Garcia
- Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental INIA La Estanzuela, Colonia, Uruguay
| | - Aldo Merotto
- Department of Crop Science, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Paul Neve
- Rothamsted Research, West Common, Harpenden, Hertfordshire, UK
- Plant & Environmental Sciences Department, University of Copenhagen, Tåstrup, Denmark
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175
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Laforest M, Soufiane B, Patterson EL, Vargas JJ, Boggess SL, Houston LC, Trigiano RN, Brosnan JT. Differential expression of genes associated with non-target site resistance in Poa annua with target site resistance to acetolactate synthase inhibitors. PEST MANAGEMENT SCIENCE 2021; 77:4993-5000. [PMID: 34218510 PMCID: PMC8518846 DOI: 10.1002/ps.6541] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 06/28/2021] [Accepted: 07/04/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Poa annua is a pervasive grassy, self-pollinating, weed that has evolved resistance to 10 different herbicide modes-of-action, third most of all weed species. We investigated constitutive overexpression of genes associated with non-target site resistance (NTSR) in POAAN-R3 and the response of those genes when treated with trifloxysulfuron despite the biotype having a known target site mutation in acetolactate synthase (ALS). RESULTS Despite having an ALS target site mutation, POAAN-R3 still had a transcriptomic response to herbicide application that differed from a susceptible biotype. We observed differential expression of genes associated with transmembrane transport and oxidation-reduction activities, with differences being most pronounced prior to herbicide treatment. CONCLUSIONS In the P. annua biotype we studied with confirmed target site resistance to ALS inhibitors, we also observed constitutive expression of genes regulating transmembrane transport, as well as differential expression of genes associated with oxidative stress after treatment with trifloxysulfuron. This accumulation of mechanisms, in addition to the manifestation of target site resistance, could potentially increase the chance of survival when plants are challenged by different modes of action.
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Affiliation(s)
- Martin Laforest
- Saint‐Jean‐sur‐Richelieu R&D Centre, Agriculture and Agri‐Food CanadaSaint‐Jean‐sur‐RichelieuQCCanada
| | - Brahim Soufiane
- Saint‐Jean‐sur‐Richelieu R&D Centre, Agriculture and Agri‐Food CanadaSaint‐Jean‐sur‐RichelieuQCCanada
| | - Eric L Patterson
- Department of Plant, Soil, & Microbial SciencesMichigan State UniversityEast LansingMIUSA
| | - José J Vargas
- Department of Plant SciencesUniversity of TennesseeKnoxvilleTNUSA
| | - Sarah L Boggess
- Department of Entomology & Plant PathologyUniversity of TennesseeKnoxvilleTNUSA
| | - Logan C Houston
- Department of Entomology & Plant PathologyUniversity of TennesseeKnoxvilleTNUSA
| | - Robert N Trigiano
- Department of Entomology & Plant PathologyUniversity of TennesseeKnoxvilleTNUSA
| | - James T Brosnan
- Department of Plant SciencesUniversity of TennesseeKnoxvilleTNUSA
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176
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Benakashani F, Gonzalez-Andujar JL, Soltani E. Differences in Germination of ACCase-Resistant Biotypes Containing Isoleucine-1781-Leucine Mutation and Susceptible Biotypes of Wild Oat (Avena sterilis ssp. ludoviciana). PLANTS 2021; 10:plants10112350. [PMID: 34834713 PMCID: PMC8620882 DOI: 10.3390/plants10112350] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 10/22/2021] [Accepted: 10/27/2021] [Indexed: 11/17/2022]
Abstract
Herbicide resistance can affect seed germination and the optimal conditions required for seed germination, which in turn may impose a fitness cost in resistant populations. Winter wild oat [Avena sterilis L. ssp. ludoviciana (Durieu) Gillet and Magne] is a serious weed in cereal fields. In this study, the molecular basis of resistance to an ACCase herbicide, clodinafop-propargyl, in four A. ludoviciana biotypes was assessed. Germination differences between susceptible (S) and ACCase-resistant biotypes (WR1, WR2, WR3, WR4) and the effect of Isoleucine-1781-Leucine mutation on germination were also investigated through germination models. The results indicated that WR1 and WR4 were very highly resistant (RI > 214.22) to clodinafop-propargyl-contained Isoleucine to Leucine amino acid substitution. However, Isoleucine-1781-Leucine mutation was not detected in other very highly resistant biotypes. Germination studies indicated that resistant biotypes (in particular WR1 and WR4) had higher base water potentials than the susceptible one. This shows that resistant biotypes need more soil water to initiate their germination. However, the hydrotime constant for germination was higher in resistant biotypes than in the susceptible one in most cases, showing faster germination in susceptible biotypes. ACCase-resistant biotypes containing the Isoleucine-1781-Leucine mutation had lower seed weight but used more seed reserve to produce seedlings. Hence, integrated management practices such as stale seedbed and implementing it at the right time could be used to take advantage of the differential soil water requirement and relatively late germination characteristics of ACCase-resistant biotypes.
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Affiliation(s)
- Fatemeh Benakashani
- Department of Agronomy and Plant Breeding Sciences, College of Aburaihan, University of Tehran, Pakdasht 3391653755, Iran; (F.B.); (E.S.)
| | - Jose L. Gonzalez-Andujar
- Department of Crop Protection, Instituto de Agricultura Sostenible (CSIC), 14004 Córdoba, Spain
- Correspondence:
| | - Elias Soltani
- Department of Agronomy and Plant Breeding Sciences, College of Aburaihan, University of Tehran, Pakdasht 3391653755, Iran; (F.B.); (E.S.)
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177
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Torra J, Osuna MD, Merotto A, Vila-Aiub M. Editorial: Multiple Herbicide-Resistant Weeds and Non-target Site Resistance Mechanisms: A Global Challenge for Food Production. FRONTIERS IN PLANT SCIENCE 2021; 12:763212. [PMID: 34777445 PMCID: PMC8581628 DOI: 10.3389/fpls.2021.763212] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 09/29/2021] [Indexed: 05/07/2023]
Affiliation(s)
- Joel Torra
- Department d'Hortofructicultura, Botànica i Jardineria, Agrotecnio-CERCA Center, Universitat de Lleida, Lleida, Spain
| | - María Dolores Osuna
- Center for Scientific and Technological Research of Extremadura (CICYTEX), Agrarian Research Center “Finca La Orden” Valdesequera, Badajoz, Spain
| | - Aldo Merotto
- Department of Crop Science, Faculty of Agronomy, Federal University of Rio Grande Do Sul (UFRGS), Porto Alegre, Brazil
| | - Martin Vila-Aiub
- Department of Ecology, IFEVA -CONICET, Faculty of Agronomy, University of Buenos Aires (UBA), Buenos Aires, Argentina
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178
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Gherekhloo J, Hassanpour-bourkheili S, Hejazirad P, Golmohammadzadeh S, Vazquez-Garcia JG, De Prado R. Herbicide Resistance in Phalaris Species: A Review. PLANTS 2021; 10:plants10112248. [PMID: 34834611 PMCID: PMC8621942 DOI: 10.3390/plants10112248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Revised: 10/14/2021] [Accepted: 10/15/2021] [Indexed: 11/26/2022]
Abstract
Weeds, such as Phalaris spp., can drastically reduce the yield of crops, and the evolution of resistance to herbicides has further exacerbated this issue. Thus far, 23 cases of herbicide resistance in 11 countries have been reported in Phalaris spp., including Phalaris minor Retz., Phalaris paradoxa L., and Phalaris brachystachys L., for photosystem II (PS-II), acetyl-CoA carboxylase (ACCase), and acetolactate synthase (ALS)-inhibiting herbicides. This paper will first review the cases of herbicide resistance reported in P. minor, P. paradoxa, and P. brachystachys. Then, the mechanisms of resistance in Phalaris spp. are discussed in detail. Finally, the fitness cost of herbicide resistance and the literature on the management of herbicide-resistant weeds from these species are reviewed.
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Affiliation(s)
- Javid Gherekhloo
- Department of Agronomy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan 49189-43464, Iran; (S.H.-b.); (P.H.); (S.G.)
- Correspondence: (J.G.); (R.D.P.)
| | - Saeid Hassanpour-bourkheili
- Department of Agronomy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan 49189-43464, Iran; (S.H.-b.); (P.H.); (S.G.)
| | - Parvin Hejazirad
- Department of Agronomy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan 49189-43464, Iran; (S.H.-b.); (P.H.); (S.G.)
| | - Sajedeh Golmohammadzadeh
- Department of Agronomy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan 49189-43464, Iran; (S.H.-b.); (P.H.); (S.G.)
| | - Jose G. Vazquez-Garcia
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Cordoba, 14071 Cordoba, Spain;
| | - Rafael De Prado
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Cordoba, 14071 Cordoba, Spain;
- Correspondence: (J.G.); (R.D.P.)
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179
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Yao C, Meyer KG, Gallup C, Bowling AJ, Hufnagl A, Myung K, Lutz J, Slanec T, Pence HE, Delgado J, Wang NX. Florylpicoxamid, a new picolinamide fungicide with broad spectrum activity. PEST MANAGEMENT SCIENCE 2021; 77:4483-4496. [PMID: 34010509 DOI: 10.1002/ps.6483] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 04/15/2021] [Accepted: 05/19/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Following the introduction of fenpicoxamid, a natural product-based fungicide targeting the Qi site of mitochondrial cytochrome bc1 complex, a second generation fully synthetic picolinamide, florylpicoxamid, was discovered and its biological activity and attributes were characterized. RESULTS In vitro fungal growth inhibition assays and in planta glasshouse biological activity evaluations showed florylpicoxamid was active against 21 different plant pathogenic fungi within the phyla Ascomycota and Basidiomycota. Among the pathogens evaluated, florylpicoxamid was most potent against Zymoseptoria tritici, the causal organism of wheat leaf blotch, providing 80% growth inhibition in vitro at 0.0046 mg L-1 and 80% disease control in planta at 0.03 mg L-1 when applied as a preventative treatment. Florylpicoxamid was more efficacious than epoxiconazole, fluxapyroxad, and benzovindiflupyr versus a Z. tritici wild-type isolate when applied as curative and preventative treatments, with superior 10-day curative reachback activity. Analytical studies and in planta tests demonstrated that florylpicoxamid partitioned into plants quickly and showed good systemicity and translaminar activity on both monocot and dicot plants. No cross-resistance was observed between florylpicoxamid and strobilurin or azole fungicides. Florylpicoxamid exerts its preventative effect by preventing spore germination on the leaf surface and curative activity by arresting mycelial growth and pycnidia development in leaf tissue. CONCLUSIONS With strong broad spectrum fungicidal activity, florylpicoxamid delivers an innovative solution for growers to sustain high productivity and quality of many crops, and also provides a new option for developing effective strategies for fungicide resistance management. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Chenglin Yao
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Kevin G Meyer
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Courtney Gallup
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Andrew J Bowling
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Andrea Hufnagl
- Corteva Agriscience, Crop Protection Discovery & Development, Guyancourt, France
| | | | - Jamie Lutz
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Thomas Slanec
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Heather E Pence
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Javier Delgado
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
| | - Nick X Wang
- Corteva Agriscience, Crop Protection Discovery & Development, Indianapolis, IN, USA
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180
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Cutti L, Rigon CAG, Kaspary TE, Turra GM, Markus C, Merotto A. Negative cross-resistance to clomazone in imazethapyr-resistant Echinochloa crus-galli caused by increased metabolization. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2021; 178:104918. [PMID: 34446194 DOI: 10.1016/j.pestbp.2021.104918] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Revised: 06/21/2021] [Accepted: 07/08/2021] [Indexed: 06/13/2023]
Abstract
Herbicide resistance is frequently reported in E. crus-galli globally with target and non-target site resistance mechanism to acetolactate synthase (ALS)-inhibiting herbicides. However, resistance to certain herbicides can result in increased sensitivity to other herbicides, a phenomenon called negative cross-resistance. The objective of this study is to identify the occurrence of negative cross-resistance (NCR) to the pro-herbicide clomazone in populations of E. crus-galli resistant to ALS inhibitors due to increased metabolization. Clomazone dose-response curves, with and without malathion, were performed in imazethapyr-resistant and -susceptible E. crus-galli biotypes. CYPs genes expression and antioxidant enzymes activity were also evaluated. The effective dose to reduce 50% (ED50) of dry shoot weight obtained in the clomazone dose-response curves of the metabolic based imazethapyr-resistant and -susceptible biotypes groups were 22.712 and 58.745 g ha-1, respectively, resulting in a resistance factor (RF) of 0.37, indicating the occurrence of NCR. The application of malathion prior to clomazone increased the resistance factor from 0.60 to 1.05, which indicate the reversion of the NCR. Some CYP genes evaluated were expressed in a higher level, ranging from 2.6-9.1 times according to the biotype and the gene, in the imazethapyr-resistant than in -susceptible biotypes following clomazone application. Antioxidant enzyme activity was not associated with NCR. This study is the first report of NCR directly related to the mechanism of resistance increased metabolization in plants. The occurrence of NCR to clomazone in E. crus-galli can help delay the evolution of herbicide resistance.
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Affiliation(s)
- Luan Cutti
- Crop Science Department, Federal University of Rio Grande do Sul, Porto Alegre, RS 91540-000, Brazil.
| | | | - Tiago Edu Kaspary
- Crop Science Department, Federal University of Rio Grande do Sul, Porto Alegre, RS 91540-000, Brazil
| | - Guilherme Menegol Turra
- Crop Science Department, Federal University of Rio Grande do Sul, Porto Alegre, RS 91540-000, Brazil
| | - Catarine Markus
- Crop Science Department, Federal University of Rio Grande do Sul, Porto Alegre, RS 91540-000, Brazil
| | - Aldo Merotto
- Crop Science Department, Federal University of Rio Grande do Sul, Porto Alegre, RS 91540-000, Brazil.
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181
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Zhang C, Yu CJ, Yu Q, Guo WL, Zhang TJ, Tian XS. Evolution of multiple target-site resistance mechanisms in individual plants of glyphosate-resistant Eleusine indica from China. PEST MANAGEMENT SCIENCE 2021; 77:4810-4817. [PMID: 34161662 DOI: 10.1002/ps.6527] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 06/08/2021] [Accepted: 06/23/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Glyphosate has been used for weed control in South China in various situations for four decades, and most Eleusine indica populations are suspected to have evolved resistance to glyphosate. This research investigated underling target-site glyphosate resistance mechanisms in six field-collected, putative glyphosate-resistant (R) E. indica populations. RESULTS The six R E. indica populations were confirmed to be low (1.8 to 2.6-fold) to moderately (5.6- to 8.4-fold) resistant to glyphosate relative to the susceptible (S) population. Sixty-seven glyphosate-surviving plants from the six R populations were used to examine target-site resistance mechanisms. Target-site 5-enolpyruvylshikimate3-phosphate synthase (EPSPS) overexpression (OE) (plus further induction by glyphosate treatment) and gene copy number variation (CNV) occurred in 94% R plants, and among them, 16% had the P106A mutation and 49% had the heterozygous double TIPS (T102I + P106S) mutation (plus P381L). In addition, a low number of R plants (6%) only had the homologous TIPS (plus P381L) mutation. The (CT)6 insertion mutation in the EPSPS 5†-UTR always associates with EPSPS OE and CNV. Progeny plants possessing EPSPS OE/CNV (and P106A) displayed low level (up to 4.5-fold) glyphosate resistance. In contrast, plants homozygous for the TIPS mutation displayed higher (25-fold) resistance to glyphosate and followed by plants heterozygous for this mutation plus EPSPS OE/CNV (12-fold). CONCLUSIONS Target-site glyphosate resistance in E. indica populations from South China is common with prevalence of EPSPS OE/induction/CNV conferring low level resistance. Individual plants acquiring both the TIPS mutation and EPSPS OE/CNV are favored due to evolutionary advantages. The role of (CT)6 insertion mutation in EPSPS CNV is worth further investigation. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Chun Zhang
- Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Chao-Jie Yu
- Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Qin Yu
- Australian Herbicide Resistance Initiative, School of Agriculture and Environment, University of Western Australia, Perth, WA, Australia
| | - Wen-Lei Guo
- Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Tai-Jie Zhang
- Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Xing-Shan Tian
- Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou, China
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182
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Mahgoub ALAAM. Measuring the ecological preference for growth of 150 of the most influential weeds in weed community structure associated with agronomic and horticultural crops. Saudi J Biol Sci 2021; 28:5593-5608. [PMID: 34588870 PMCID: PMC8459059 DOI: 10.1016/j.sjbs.2021.05.070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 05/25/2021] [Accepted: 05/27/2021] [Indexed: 11/19/2022] Open
Abstract
The phytosociological researches which intent for studying the performance of weeds and the structure of weed assemblages associated with different crops derives their importance mainly from the adverse effect of weeds on crop productivity. Consequently, it is worth questioning about the ecological preferences of the weed growth in response to three main drivers for weed community structure associated with agronomic, and horticultural crops: crop diversification, crop seasonality, and soil type. A study area was selected comprising farmland of Nile Delta and its adjoining east and west territories, Egypt. A total of 555 species were recorded in 30 agroecosystems monitored and depending on species frequency/abundance values, 150 species were designated as the most influential weeds in weed community structure associated with agronomic and horticultural crops. The ecological preference of species for crop seasonality was evident through the results of Agglomerative hierarchical clustering. Three weed assemblage groups (WAG) identified: WAG A associated with winter agronomic crops, WAG B associated with summer agronomic crops, and WAG C associated with perennial agronomic crops and horticultural crops (orchards). Their diversity evaluated at different levels. The growth preference of the 150 species which were assigned as most influential weeds was gauged in response to the three environmental variables. 61 species were faithful to WAG A, 45 to WAG B, and 44 to WAG C. Concerning crop diversification, 34-species were significantly affected and scored coefficient of variation ≥ 100%. As for soil type, indicator species analysis revealed that 66-species show growth preference in fine grained soil while 84-species prefer coarse grained soil. In the three vegetation units (WAG A - C), 12 within-group associations (alliances) were specified of less-common (differential) species. The record of these alliances match to a specific environmental condition (ecological niche) and in them 29 strong indicators are identified. Redundancy analysis was used to extract and summarize the variation in species records in the response matrix (species vs. sites) that can be explained by the three different types of growth preference (explanatory variables), and the partial linear effect of them was evaluated by variation partitioning.
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183
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Tanigaki S, Uchino A, Okawa S, Miura C, Hamamura K, Matsuo M, Yoshino N, Ueno N, Toyama Y, Fukumi N, Kijima E, Masuda T, Shimono Y, Tominaga T, Iwakami S. Gene expression shapes the patterns of parallel evolution of herbicide resistance in the agricultural weed Monochoria vaginalis. THE NEW PHYTOLOGIST 2021; 232:928-940. [PMID: 34270808 DOI: 10.1111/nph.17624] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 07/02/2021] [Indexed: 06/13/2023]
Abstract
The evolution of herbicide resistance in weeds is an example of parallel evolution, through which genes encoding herbicide target proteins are repeatedly represented as evolutionary targets. The number of herbicide target-site genes differs among species, and little is known regarding the effects of duplicate gene copies on the evolution of herbicide resistance. We investigated the evolution of herbicide resistance in Monochoria vaginalis, which carries five copies of sulfonylurea target-site acetolactate synthase (ALS) genes. Suspected resistant populations collected across Japan were investigated for herbicide sensitivity and ALS gene sequences, followed by functional characterization and ALS gene expression analysis. We identified over 60 resistant populations, all of which carried resistance-conferring amino acid substitutions exclusively in MvALS1 or MvALS3. All MvALS4 alleles carried a loss-of-function mutation. Although the enzymatic properties of ALS encoded by these genes were not markedly different, the expression of MvALS1 and MvALS3 was prominently higher among all ALS genes. The higher expression of MvALS1 and MvALS3 is the driving force of the biased representation of genes during the evolution of herbicide resistance in M. vaginalis. Our findings highlight that gene expression is a key factor in creating evolutionary hotspots.
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Affiliation(s)
- Shinji Tanigaki
- Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Akira Uchino
- Central Region Agricultural Research Center, National Agriculture and Food Research Organization, Tsu, 514-2392, Japan
| | - Shigenori Okawa
- Miyagi Prefectural Furukawa Agricultural Experiment Station, Fukoku 88, Furukawa-Osaki, 989-6227, Japan
| | - Chikako Miura
- Akita Prefectural Agricultural Experiment Station, 34-1 Yuwaaikawa-azagenpachizawa, Akita, 010-1231, Japan
| | - Kenshiro Hamamura
- Japan Association for Advancement of Phyto-Regulators (JAPR), 860 Kashiwada-cho, Ushiku, 300-1211, Japan
| | - Mitsuhiro Matsuo
- Field Science Center, Faculty of Agriculture, University of Miyazaki, 1-1 Gakuen-kibanadai-nishi, Miyazaki, 889-2192, Japan
| | - Namiko Yoshino
- Tohoku Agricultural Research Center, National Agriculture and Food Research Organization, 50 Harajukuminami, Arai, 960-2156, Japan
| | - Naoya Ueno
- Yamanashi Prefectural Agritechnology Center, 1100 Shimoimai, Kai, 400-0105, Japan
| | - Yusuke Toyama
- Shizuoka Prefectural Research Institute of Agriculture and Forestry, 678-1 Tomigaoka, Iwata, 438-0803, Japan
| | - Naoya Fukumi
- Tottori Agricultural Experiment Station, 260 Hashimoto, Tottori, 680-1142, Japan
| | - Eiji Kijima
- Yamaguchi Prefectural Agriculture and Forestry General Technology Center, 1-1-1 Ouchihikami, Yamaguchi, 753-0231, Japan
| | - Taro Masuda
- Faculty of Agriculture, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, 573-0101, Japan
| | - Yoshiko Shimono
- Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Tohru Tominaga
- Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Satoshi Iwakami
- Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
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184
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Choudhary VK, Reddy SS, Mishra SK, Kumar B, Gharde Y, Kumar S, Yadav M, Barik S, Singh PK. Resistance in smallflower umbrella sedge ( Cyperus difformis) to an acetolactate synthase–inhibiting herbicide in rice: first case in India. WEED TECHNOLOGY 2021; 35:710-717. [DOI: 10.1017/wet.2021.73] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/30/2023]
Abstract
AbstractSmallflower umbrella sedge is one of the most problematic weeds in direct-seeded rice in India. Bispyribac-sodium (acetolactate synthase [ALS]-inhibiting herbicide) is commonly used in rice, but growers have recently reported lack of smallflower umbrella sedge control with this herbicide. An extensive survey was carried out in two rice-growing states, Chhattisgarh and Kerala, where 53 putative bispyribac-sodium-resistant (BR) biotypes were collected. Studies were conducted to confirm resistance to bispyribac-sodium and to test the efficacy of the newly developed synthetic auxin herbicide florpyrauxifen-benzyl on putative BR biotypes. A whole-plant bioassay revealed that bispyribac-sodium is no longer effective. Of 53 putative BR biotypes, 17 biotypes survived the recommended label rate of 25 g ai ha−1. The effective bispyribac-sodium rate required to control 50% of the plants in most of the BR biotypes (ED50) ranged from 19 to 96 g ha−1, whereas it was 10 g ha−1 in a susceptible biotype. In two highly resistant biotypes, the ED50 was beyond the maximum tested rate, 200 g ha−1. This suggests 2- to >20-fold resistance in BR biotypes. An ALS enzyme activity assay suggests an altered target site as mechanism of resistance to bispyribac-sodium. This study confirms the first case of evolved resistance to bispyribac-sodium in smallflower umbrella sedge in India. However, the newly developed synthetic auxin florpyrauxifen-benzyl effectively controlled all BR biotypes at the field use rate of 31.25 g ai ha−1.
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185
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Lou BX, Fan SJ. Characterization and phylogenetic analysis of the complete plastome of Amaranthus retroflexus L. (Amaranthaceae), an annual weeds. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:2847-2848. [PMID: 34514150 PMCID: PMC8425639 DOI: 10.1080/23802359.2021.1970640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The complete plastome of Amaranthus retroflexus L., a field weed, was identified in this study. The genome size was 150,710 bp and consists of a large single-copy (LSC: 83,892 bp) region, a small single-copy (SSC: 18,100 bp) region, and two inverted repeats (IRs: 24,359 bp) regions. GC content was 36.6%. A total of 113 genes were identified, including 79 protein-coding genes, four rRNA genes, and 30 tRNA genes. Twenty chloroplast genomes from Amaranthaceae were selected to reconstruct phylogenetic tree and the result supported that A. retroflexus was sister to A. hypochondriacus and A. caudatus.
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Affiliation(s)
- Ben-Xia Lou
- College of Life Sciences, Shandong Provincial Key Laboratory of Plant Stress Research, Shandong Normal University, Ji'nan, Shandong, China
| | - Shou-Jin Fan
- College of Life Sciences, Shandong Provincial Key Laboratory of Plant Stress Research, Shandong Normal University, Ji'nan, Shandong, China
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186
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Tang W, Liu S, Yu X, Yang Y, Zhou X, Lu Y. The Basis of Tolerance Mechanism to Metsulfuron-Methyl in Roegneria kamoji (Triticeae: Poaceae). PLANTS 2021; 10:plants10091823. [PMID: 34579356 PMCID: PMC8466435 DOI: 10.3390/plants10091823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 08/26/2021] [Accepted: 08/29/2021] [Indexed: 11/16/2022]
Abstract
Roegneria kamoji, a perennial monocot weed that belongs to the tribe Triticeae (family: Poaceae), is an emerging problematic weed in winter wheat (Triticum aestivum) fields in China. We have previously confirmed four R. kamoji populations tolerant to acetyl-CoA carboxylase (ACCase) inhibitors, and failed control of these populations by metsulfuron-methyl was observed. The objective of this study was to characterize the level of tolerance to metsulfuron-methyl, the basis of tolerance mechanism, and cross-tolerance to acetolactate synthase (ALS) inhibitors in R. kamoji. A whole-plant dose–response assay showed that plants of all R. kamoji populations (both from wheat fields and uncultivated areas) exhibited high tolerance to metsulfuron-methyl, based on their 100% survival at 6-fold recommended field dose (RFD) and ED50 values >6.84-fold RFD, no susceptible population was found. Gene sequencing indicated that no reported amino acid substitutions associated with resistance to ALS inhibitor were found in the ALS gene among the R. kamoji populations. Pretreatment with the known cytochrome P450 monooxygenases (CytP450) inhibitor malathion reduced the ED50 values of metsulfuron-methyl in two R. kamoji populations. These populations also exhibited cross-tolerance to RFD of mesosulfuron-methyl and bispyribac-sodium. The activities of glutathione-S-transferase (GST) and CytP450 could be induced by metsulfuron-methyl in R. kamoji, which is similar to the known tolerant crop wheat. This is the first report elucidating metsulfuron-methyl tolerance in R. kamoji. The reversal of tolerance by malathion and the GST and/or CytP450 enhanced herbicide metabolism suggests that non-target-site mechanisms confer tolerance to metsulfuron-methyl in R. kamoji.
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Affiliation(s)
- Wei Tang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China; (W.T.); (X.Y.); (Y.Y.)
| | - Shengnan Liu
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China;
| | - Xiaoyue Yu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China; (W.T.); (X.Y.); (Y.Y.)
| | - Yongjie Yang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China; (W.T.); (X.Y.); (Y.Y.)
| | - Xiaogang Zhou
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China;
- Correspondence: (X.Z.); (Y.L.); Tel.: +86-028-84590090 (X.Z.); +86-0571-63370333 (Y.L.)
| | - Yongliang Lu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China; (W.T.); (X.Y.); (Y.Y.)
- Correspondence: (X.Z.); (Y.L.); Tel.: +86-028-84590090 (X.Z.); +86-0571-63370333 (Y.L.)
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187
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Squires CC, Coleman GR, Broster JC, Preston C, Boutsalis P, Owen MJ, Jalaludin A, Walsh MJ. Increasing the value and efficiency of herbicide resistance surveys. PEST MANAGEMENT SCIENCE 2021; 77:3881-3889. [PMID: 33650211 DOI: 10.1002/ps.6333] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Revised: 02/12/2021] [Accepted: 03/01/2021] [Indexed: 06/12/2023]
Abstract
The scale of herbicide resistance within a cropping region can be estimated and monitored using surveys of weed populations. The current approach to herbicide resistance surveys is time-consuming, logistically challenging and costly. Here we review past and current approaches used in herbicide resistance surveys with the aims of (i) defining effective survey methodologies, (ii) highlighting opportunities for improving efficiencies through the use of new technologies and (iii) identifying the value of repeated region-wide herbicide resistance surveys. One of the most extensively surveyed areas of the world's cropping regions is the Australian grain production region, with >2900 fields randomly surveyed in each of three surveys conducted over the past 15 years. Consequently, recommended methodologies are based on what has been learned from the Australian experience. Traditional seedling-based herbicide screening assays remain the most reliable and widely applicable method for characterizing resistance in weed populations. The use of satellite or aerial imagery to plan collections and image analysis to rapidly quantify screening results could complement traditional resistance assays by increasing survey efficiency and sampling accuracy. Global management of herbicide-resistant weeds would benefit from repeated and standardized surveys that track herbicide resistance evolution within and across cropping regions. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Caleb C Squires
- School of Life and Environmental Science, Sydney Institute of Agriculture, University of Sydney, Camden, Australia
| | - Guy Ry Coleman
- School of Life and Environmental Science, Sydney Institute of Agriculture, University of Sydney, Camden, Australia
| | - John C Broster
- Graham Centre for Agricultural Innovation (Charles Sturt University and NSW Department of Primary Industries), Charles Sturt University, Wagga Wagga, Australia
| | - Christopher Preston
- School of Agriculture Food and Wine, University of Adelaide, Glen Osmond, Australia
| | - Peter Boutsalis
- School of Agriculture Food and Wine, University of Adelaide, Glen Osmond, Australia
| | - Mechelle J Owen
- Australian Herbicide Resistance Initiative, School of Agriculture and Environment, University of Western Australia, Crawley, Australia
| | - Adam Jalaludin
- Queensland Department of Agriculture and Fisheries, Toowoomba, Australia
| | - Michael J Walsh
- School of Life and Environmental Science, Sydney Institute of Agriculture, University of Sydney, Camden, Australia
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188
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Madgwick PG, Kanitz R. Evolution of resistance under alternative models of selective interference. J Evol Biol 2021; 34:1608-1623. [PMID: 34449949 PMCID: PMC9293239 DOI: 10.1111/jeb.13919] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 07/28/2021] [Accepted: 08/19/2021] [Indexed: 01/19/2023]
Abstract
The use of multiple pesticides or drugs can lead to a simultaneous selection pressure for resistance alleles at different loci. Models of resistance evolution focus on how this can delay the spread of resistance through a population, but often neglect how this can also reduce the probability that a resistance allele spreads. This neglected factor has been studied in a parallel literature as selective interference. Models of interference use alternative constructions of fitness, where selection coefficients from different loci either add or multiply. Although these are equivalent under weak selection, the two constructions make alternative predictions under the strong selection that characterizes resistance evolution. Here, simulations are used to examine the effects of interference on the probability of fixation and time to fixation of a new and strongly beneficial mutation in the presence of another strongly beneficial allele with variable starting frequency. The results from simulations show a complicated pattern of effects. The key result is that, under multiplicativity, the presence of the strongly beneficial allele leads to a small reduction in the probability of fixation for the new beneficial mutation up to ~10%, and a negligible increase in the average time to fixation up to ~2%, whereas under additivity, the effect is more substantial at up to ~50% for the probability of fixation and ~100% for the average time to fixation. Consequently, the effect of interference is only an important feature of resistance evolution under additivity. Current evidence from studies of experimental evolution provides widespread support for the basic features of additivity, which suggests that interference may afford resistance a different pattern of evolution than other adaptations: rather than the gradual and simultaneous selection of many alleles with small effects, the rapid evolution of resistance may involve the sequential selection of alleles with large effects.
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Affiliation(s)
- Philip G Madgwick
- Syngenta, Jealott's Hill International Research Centre, Bracknell, UK
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189
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Vázquez-García JG, Torra J, Palma-Bautista C, Alcántara-de la Cruz R, Prado RD. Point Mutations and Cytochrome P450 Can Contribute to Resistance to ACCase-Inhibiting Herbicides in Three Phalaris Species. PLANTS 2021; 10:plants10081703. [PMID: 34451748 PMCID: PMC8401167 DOI: 10.3390/plants10081703] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 08/15/2021] [Accepted: 08/16/2021] [Indexed: 11/13/2022]
Abstract
Species of Phalaris have historically been controlled by acetyl-coenzyme A carboxylase (ACCase)-inhibiting herbicides; however, overreliance on herbicides with this mechanism of action has resulted in the selection of resistant biotypes. The resistance to ACCase-inhibiting herbicides was characterized in Phalaris brachystachys, Phalaris minor, and Phalaris paradoxa samples collected from winter wheat fields in northern Iran. Three resistant (R) biotypes, one of each Phalaris species, presented high cross-resistance levels to diclofop-methyl, cycloxydim, and pinoxaden, which belong to the chemical families of aryloxyphenoxypropionates (FOPs), cyclohexanediones (DIMs), and phenylpyrazolines (DENs), respectively. The metabolism of 14C-diclofop-methyl contributed to the resistance of the P. brachystachys R biotype, while no evidence of herbicide metabolism was found in P. minor or P. paradoxa. ACCase in vitro assays showed that the target sites were very sensitive to FOP, DIM, and DEN herbicides in the S biotypes of the three species, while the R Phalaris spp. biotypes presented different levels of resistance to these herbicides. ACCase gene sequencing confirmed that cross-resistance in Phalaris species was conferred by specific point mutations. Resistance in the P. brachystachys R biotype was due to target site and non-target-site resistance mechanisms, while in P. minor and P. paradoxa, only an altered target site was found.
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Affiliation(s)
- José G. Vázquez-García
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Córdoba, 14014 Córdoba, Spain;
- Correspondence: (J.G.V.-G.); (R.D.P.); Tel.: +34-95-721-8600 (R.D.P.)
| | - Joel Torra
- Department d’Hortofruticultura, Botànica i Jardineria, Agrotecnio, Universitat de Lleida, 25198 Lleida, Spain;
| | - Candelario Palma-Bautista
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Córdoba, 14014 Córdoba, Spain;
| | - Ricardo Alcántara-de la Cruz
- Centro de Ciências da Natureza, Campus Lagoa do Sino, Universidade Federal de São Carlos, Buri 18290-000, Brazil;
| | - Rafael De Prado
- Department of Agricultural Chemistry, Edaphology and Microbiology, University of Córdoba, 14014 Córdoba, Spain;
- Correspondence: (J.G.V.-G.); (R.D.P.); Tel.: +34-95-721-8600 (R.D.P.)
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190
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Tao ZW, Bu H, Li J, Jia P, Qi W, Liu K, Du GZ. Effects of different artificial planting schemes on invasive weeds. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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191
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Bemowska-Kałabun O, Bogucka A, Wiłkomirski B, Wierzbicka M. Survival on railway tracks of Geranium robertianum-a glyphosate-tolerant plant. ECOTOXICOLOGY (LONDON, ENGLAND) 2021; 30:1186-1202. [PMID: 34110544 PMCID: PMC8295122 DOI: 10.1007/s10646-021-02430-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 05/24/2021] [Indexed: 06/12/2023]
Abstract
Geranium robertianum is a herbaceous plant that prefers shady and fertile forest habitats. However, it also occurs on railway tracks, where there are difficult conditions for plant growth and regular herbicide spraying (in high concentrations, twice a year). One of the most commonly used herbicides in railway areas is glyphosate. The effect of the glyphosate on the G. robertianum plants found on railway tracks and in nearby forests in north-eastern Poland was checked. The aim of the study was to explain how G. robertianum can survive on railway tracks despite spraying with the glyphosate. Increased tolerance to the glyphosate of the G. robertianum plants from track populations was demonstrated compared to the plants from forest populations that had not previously been in contact with the herbicide. After 35 days after treatment with the herbicide, 75% of the plants from the observed forest populations withered, while only 38% did from the track populations. Ultrastructure of plant leaf cells from forest populations was strongly disturbed, which was not observed in plants from track populations. It was also shown that plants from track populations accumulated more glyphosate and AMPA in their tissues than plants from forest populations. The obtained results indicate that long-term use of herbicides may cause formation of biotypes of plants resistant to a given herbicide. This fact explains the possibility of G. robertianum occurring on railway tracks, despite spraying with the glyphosate. It is also a manifestation of microevolutionary processes.
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Affiliation(s)
- Olga Bemowska-Kałabun
- Institute of Environmental Biology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, 02-096, Warsaw, Poland.
| | - Agnieszka Bogucka
- Institute of Environmental Biology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, 02-096, Warsaw, Poland
| | - Bogusław Wiłkomirski
- Institute of Geography and Environmental Science, The Jan Kochanowski University in Kielce, Świętokrzyska 15, 25-406, Kielce, Poland
| | - Małgorzata Wierzbicka
- Institute of Environmental Biology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, 02-096, Warsaw, Poland
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192
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Josephs EB, Van Etten ML, Harkess A, Platts A, Baucom RS. Adaptive and maladaptive expression plasticity underlying herbicide resistance in an agricultural weed. Evol Lett 2021; 5:432-440. [PMID: 34367667 PMCID: PMC8327940 DOI: 10.1002/evl3.241] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 04/29/2021] [Accepted: 05/20/2021] [Indexed: 11/09/2022] Open
Abstract
Plastic phenotypic responses to environmental change are common, yet we lack a clear understanding of the fitness consequences of these plastic responses. Here, we use the evolution of herbicide resistance in the common morning glory (Ipomoea purpurea) as a model for understanding the relative importance of adaptive and maladaptive gene expression responses to herbicide. Specifically, we compare leaf gene expression changes caused by herbicide to the expression changes that evolve in response to artificial selection for herbicide resistance. We identify a number of genes that show plastic and evolved responses to herbicide and find that for the majority of genes with both plastic and evolved responses, plastic responses appear to be adaptive. We also find that selection for herbicide response increases gene expression plasticity. Overall, these results show the importance of adaptive plasticity for herbicide resistance in a common weed and that expression changes in response to strong environmental change can be adaptive.
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Affiliation(s)
- Emily B. Josephs
- Department of Plant BiologyMichigan State UniversityEast LansingMichigan48824
- Ecology, Evolution, and Behavior ProgramMichigan State UniversityEast LansingMichigan48824
| | - Megan L. Van Etten
- Department of Ecology and Evolutionary BiologyUniversity of MichiganAnn ArborMichigan48109
- Biology DepartmentPennsylvania State UniversityDunmorePennsylvania18512
| | - Alex Harkess
- Department of Crop, Soil, and Environmental SciencesAuburn UniversityAuburnAlabama36849
- HudsonAlpha Institute for BiotechnologyHuntsvilleAlabama35806
| | - Adrian Platts
- Department of Plant BiologyMichigan State UniversityEast LansingMichigan48824
| | - Regina S. Baucom
- Department of Ecology and Evolutionary BiologyUniversity of MichiganAnn ArborMichigan48109
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193
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Battaglino B, Grinzato A, Pagliano C. Binding Properties of Photosynthetic Herbicides with the Q B Site of the D1 Protein in Plant Photosystem II: A Combined Functional and Molecular Docking Study. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10081501. [PMID: 34451546 PMCID: PMC8398153 DOI: 10.3390/plants10081501] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 07/13/2021] [Accepted: 07/20/2021] [Indexed: 05/07/2023]
Abstract
Photosystem II (PSII) is a multi-subunit enzymatic complex embedded in the thylakoid membranes responsible for the primary photosynthetic reactions vital for plants. Many herbicides used for weed control inhibit PSII by interfering with the photosynthetic electron transport at the level of the D1 protein, through competition with the native plastoquinone for the QB site. Molecular details of the interaction of these herbicides in the D1 QB site remain to be elucidated in plants. Here, we investigated the inhibitory effect on plant PSII of the PSII-inhibiting herbicides diuron, metobromuron, bentazon, terbuthylazine and metribuzin. We combined analysis of OJIP chlorophyll fluorescence kinetics and PSII activity assays performed on thylakoid membranes isolated from pea plants with molecular docking using the high-resolution PSII structure recently solved from the same plant. Both approaches showed for terbuthylazine, metribuzin and diuron the highest affinity for the D1 QB site, with the latter two molecules forming hydrogen bonds with His215. Conversely, they revealed for bentazon the lowest PSII inhibitory effect accompanied by a general lack of specificity for the QB site and for metobromuron an intermediate behavior. These results represent valuable information for future design of more selective herbicides with enhanced QB binding affinities to be effective in reduced amounts.
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Affiliation(s)
- Beatrice Battaglino
- Applied Science and Technology Department—BioSolar Lab, Politecnico di Torino, Environment Park, Via Livorno 60, 10144 Torino, Italy;
| | - Alessandro Grinzato
- Department of Biomedical Sciences, University of Padova, Via Ugo Bassi 58 B, 35121 Padova, Italy;
| | - Cristina Pagliano
- Applied Science and Technology Department—BioSolar Lab, Politecnico di Torino, Environment Park, Via Livorno 60, 10144 Torino, Italy;
- Correspondence: ; Tel.: +39-0110904626
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194
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Asaduzzaman M, Koetz E, Wu H, Hopwood M, Shephard A. Fate and adaptive plasticity of heterogeneous resistant population of Echinochloa colona in response to glyphosate. Sci Rep 2021; 11:14858. [PMID: 34290336 PMCID: PMC8295337 DOI: 10.1038/s41598-021-94370-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Accepted: 07/07/2021] [Indexed: 11/20/2022] Open
Abstract
Understanding the fate of heterogenous herbicide resistant weed populations in response to management practices can help towards overcoming the resistance issues. We selected one pair of susceptible (S) and resistant (R) phenotypes (2B21-R vs 2B21-S and 2B37-R vs 2B37-S) separately from two glyphosate resistant heterogeneous populations (2B21 and 2B37) of Echinochloa colona and their fate and adaptive plasticity were evaluated after glyphosate application. Our study revealed the glyphosate concentration required to cause a 50% plant mortality (LD50) was 1187, 200, 3064, and 192 g a. e. ha-1 for the four phenotypes 2B21-R, 2B21-S, 2B37-R, and 2B37-S respectively. Both S phenotypes accumulated more biomass than the R phenotypes at the lower application rates (34 and 67.5 g a. e. ha-1) of glyphosate. However, the R phenotypes generally produced more biomass at rates of glyphosate higher than 100 g a. e. ha-1 throughout the growth period. Plants from the R phenotypes of 2B21 and 2B37 generated 32% and 38% fewer spikesplant-1 than their respective S counterparts in the absence of glyphosate respectively. The spike and seed numbersplant-1 significantly higher in R than S phenotypes at increased rates of glyphosate and these relationships were significant. Our research suggests that glyphosate-resistant E. colona plants will be less fit than susceptible plants (from the same population) in the absence of glyphosate. But in the presence of glyphosate, the R plants may eventually dominate in the field. The use of glyphosate is widespread in field, would favour the selection towards resistant individuals.
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Affiliation(s)
- Md Asaduzzaman
- NSW Department of Primary Industries, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia.
| | - Eric Koetz
- NSW Department of Primary Industries, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
| | - Hanwen Wu
- NSW Department of Primary Industries, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
| | - Michael Hopwood
- NSW Department of Primary Industries, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
| | - Adam Shephard
- NSW Department of Primary Industries, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
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195
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Chen K, Peng Y, Zhang L, Wang L, Mao D, Zhao Z, Bai L, Wang L. Whole transcriptome analysis resulted in the identification of Chinese sprangletop (Leptochloa chinensis) genes involved in cyhalofop-butyl tolerance. BMC Genomics 2021; 22:521. [PMID: 34238252 PMCID: PMC8268407 DOI: 10.1186/s12864-021-07856-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 06/25/2021] [Indexed: 12/05/2022] Open
Abstract
Background Chinese sprangletop [Leptochloa chinensis (L.) Nees] is an annual malignant weed, which can often be found in paddy fields. Cyhalofop-butyl is a specialized herbicide which is utilized to control L. chinensis. However, in many areas, L. chinensis has become tolerant to this key herbicide due to its continuous long-term use. Results In this study, we utilized a tolerant (LC18002) and a sensitive (LC17041) L. chinensis populations previously identified in our laboratory, which were divided into four different groups. We then employed whole transcriptome analysis to identify candidate genes which may be involved in cyhalofop-butyl tolerance. This analysis resulted in the identification of six possible candidate genes, including three cytochrome P450 genes and three ATP-binding cassette transporter genes. We then carried out a phylogenetic analysis to identify homologs of the differentially expressed cytochrome P450 genes. This phylogenetic analysis indicated that all genes have close homologs in other species, some of which have been implicated in non-target site resistance (NTSR). Conclusions This study is the first to use whole transcriptome analysis to identify herbicide non-target resistance genes in L. chinensis. The differentially expressed genes represent promising targets for better understanding herbicide tolerance in L. chinensis. The six genes belonging to classes already associated in herbicide tolerance may play important roles in the metabolic resistance of L. chinensis to cyhalofop-butyl, although the exact mechanisms require further study. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07856-z.
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Affiliation(s)
- Ke Chen
- Longping Branch, Graduate School of Hunan University, Changsha, People's Republic of China.,Plant Protection Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China.,Agricultural Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China
| | - Yajun Peng
- Plant Protection Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China
| | - Liang Zhang
- Longping Branch, Graduate School of Hunan University, Changsha, People's Republic of China.,Plant Protection Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China.,Agricultural Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China
| | - Long Wang
- College of Biology, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, Hunan University, 410082, Changsha, People's Republic of China
| | - Donghai Mao
- Key Laboratory of Agro-Ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, 410125, Changsha, People's Republic of China
| | - Zhenghong Zhao
- Longping Branch, Graduate School of Hunan University, Changsha, People's Republic of China
| | - Lianyang Bai
- Longping Branch, Graduate School of Hunan University, Changsha, People's Republic of China. .,Plant Protection Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China. .,Agricultural Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China.
| | - Lifeng Wang
- Longping Branch, Graduate School of Hunan University, Changsha, People's Republic of China. .,Plant Protection Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China. .,Agricultural Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha, People's Republic of China.
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196
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Oz MT, Altpeter A, Karan R, Merotto A, Altpeter F. CRISPR/Cas9-Mediated Multi-Allelic Gene Targeting in Sugarcane Confers Herbicide Tolerance. Front Genome Ed 2021; 3:673566. [PMID: 34713261 PMCID: PMC8525412 DOI: 10.3389/fgeed.2021.673566] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Accepted: 05/28/2021] [Indexed: 12/27/2022] Open
Abstract
Sugarcane is the source of 80% of the sugar and 26% of the bioethanol produced globally. However, its complex, highly polyploid genome (2n = 100 - 120) impedes crop improvement. Here, we report efficient and reproducible gene targeting (GT) in sugarcane, enabling precise co-editing of multiple alleles via template-mediated and homology-directed repair (HDR) of DNA double strand breaks induced by the programmable nuclease CRISPR/Cas9. The evaluation of 146 independently transformed plants from five independent experiments revealed a targeted nucleotide replacement that resulted in both targeted amino acid substitutions W574L and S653I in the acetolactate synthase (ALS) in 11 lines in addition to single, targeted amino acid substitutions W574L or S653I in 25 or 18 lines, respectively. Co-editing of up to three ALS copies/alleles that confer herbicide tolerance was confirmed by Sanger sequencing of cloned long polymerase chain reaction (PCR) amplicons. This work will enable crop improvement by conversion of inferior alleles to superior alleles through targeted nucleotide substitutions.
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Affiliation(s)
- Mehmet Tufan Oz
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, United States
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Gainesville, FL, United States
| | - Angelika Altpeter
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, United States
| | - Ratna Karan
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, United States
| | - Aldo Merotto
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, United States
| | - Fredy Altpeter
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, United States
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Gainesville, FL, United States
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197
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Gaines TA, Busi R, Küpper A. Can new herbicide discovery allow weed management to outpace resistance evolution? PEST MANAGEMENT SCIENCE 2021; 77:3036-3041. [PMID: 33942963 DOI: 10.1002/ps.6457] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 04/29/2021] [Accepted: 05/04/2021] [Indexed: 05/26/2023]
Abstract
While herbicides are the most effective and widely adopted weed management approach, the evolution of multiple herbicide resistance in damaging weed species threatens the yield and profitability of many crops. Weeds accumulate multiple resistance mechanisms through sequential selection and/or gene flow, with long-range and international transport of herbicide-resistant weeds proving to be a serious issue. Metabolic resistance mechanisms can confer resistance across multiple sites of action and even to herbicides not yet discovered. When a new site of action herbicide is introduced to control a key driver weed, it likely will be one of very few effective available herbicide options for that weed in a specific crop due to the continuous use of herbicides over the years and the resulting accumulation of resistance mechanisms, placing it at even higher risk to be rapidly lost to resistance due to the high selection pressure it will experience. The number of available, effective herbicides for certain driver weeds is decreasing over time because the rate of resistance evolution is faster than the rate of new herbicide discovery. Effective monitoring for species movement and diagnostics for resistance should be deployed to rapidly identify emerging resistance to any new site of action. While innovation in herbicide discovery is urgently needed to combat the pressing issue of resistance in weeds, the rate of selection for herbicide resistance in weeds must be slowed through changes in the patterns of how herbicides are used. © 2021 Society of Chemical Industry. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Todd A Gaines
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA
| | - Roberto Busi
- Australian Herbicide Resistance Initiative, School of Agriculture and Environment, University of Western Australia, Perth, WA, Australia
| | - Anita Küpper
- Bayer AG, Industriepark Höchst, Frankfurt am Main, Germany
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198
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Chen J, Wei S, Huang H, Cui H, Zhang C, Li X. Characterization of glyphosate and quizalofop-p-ethyl multiple resistance in Eleusine indica. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2021; 176:104862. [PMID: 34119213 DOI: 10.1016/j.pestbp.2021.104862] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 04/20/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
Glyphosate and Acetyl-coenzyme A Carboxylase (ACCase) inhibitors are popular herbicides that control goosegrass. However, some populations are difficult to control due to resistance resulting from the increasing selection pressure. The objectives of this research were to detect the multiple resistance levels, resistance mechanisms, and fitness costs of two goosegrass populations collected in China. The resistance indices of two resistant populations (denominated as R1 and R2) to glyphosate were 3.8 and 2.3, respectively; and it was 18.0 and 14.2 to quizalofop-p-ethyl, respectively. Shikimate accumulation in R1 and R2 populations was only 8% of that of the susceptible population after glyphosate treatment. A Pro-106-Ala mutation in EPSPS and an Asp-2078-Gly mutation in ACCase were present in both resistant populations. Both the expression level of EPSPS and ACCase in resistant populations were similar to that of susceptible populations. The leaf area of the individuals in wild-type populations was more than three times of the leaf area in the resistant populations. Similarly, resistant plants were 45-49% shorter, had 70-76% less fresh shoot weight, and 67-69% fewer seeds than wild-type plants. Goosegrass populations have evolved multiple resistance to glyphosate and the ACCase inhibitor quizalofop-p-ethyl in China. The Pro-106-Ala mutation in the EPSPS and the Asp-2078-Gly mutation in the ACCase were responsible for this resistance. In addition, a fitness cost exists in the resistant populations, and more work should conduct to clear which mutation is responsible for the fitness penalty.
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Affiliation(s)
- Jingchao Chen
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Shouhui Wei
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Hongjuan Huang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Hailan Cui
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Chaoxian Zhang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
| | - Xiangju Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
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199
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Zhou FY, Yu Q, Zhang Y, Han YJ, Yao CC. Overexpression of AGAMOUS-like gene PfAG5 promotes early flowering in Polypogon fugax. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 48:793-801. [PMID: 33820601 DOI: 10.1071/fp21047] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 02/20/2021] [Indexed: 06/12/2023]
Abstract
Herbicides are the major tool for controlling large populations of yield depleting weeds. However, over-reliance on herbicides has resulted in weed adaptation and herbicide resistance. In recent years, early flowering weed species related to herbicide resistance is emerging, which may cause seed loss before crop harvest, creating a new problem for non-chemical weed management. In this study, a homologue gene of AGAMOUS sub-family (referred to as PfAG5) of the MADS-box family was cloned from plants of an early flowering Polypogon fugax Nees ex Steud. population resistant to the ACCase inhibitor herbicide (clodinafop-propargyl). The PfAG5 gene was functionally characterised in Arabidopsis thaliana L. Overexpression of the PfAG5 gene in Arabidopsis resulted in early flowering, abnormal flowers (e.g. small petals), short plants and reduced seed set, compared with the wild type. The expression of the PfAG5 gene was high in leaves and flowers, but low in pods in transgenic Arabidopsis. The PfAG5 gene was expressed earlier and higher in the resistant (R) than the susceptible (S) P. fugax plants. Furthermore, one protein (FRIGIDA-like) with relevance to flowering time regulation and interacts with PfAG5 in resistant (R) P. fugax was identified by the yeast two-hybrid and pull-down assays. These results suggest that the PfAG5 gene is involved in modulating early flowering in P. fugax.
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Affiliation(s)
- Feng-Yan Zhou
- Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, Hefei 230001, China; and Corresponding author.
| | - Qin Yu
- Australian Herbicide Resistance Initiative (AHRI), School of Agriculture and Environment, University of Western Australia, Perth, WA 6009, Australia
| | - Yong Zhang
- Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, Hefei 230001, China
| | - Yun-Jing Han
- Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, Hefei 230001, China
| | - Chuan-Chun Yao
- Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, Hefei 230001, China
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200
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Synthetic auxin-based double salt ionic liquids as herbicides with improved physicochemical properties and biological activity. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116452] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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