151
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A receptor heteromer mediates the male perception of female attractants in plants. Nature 2016; 531:241-4. [DOI: 10.1038/nature16975] [Citation(s) in RCA: 159] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 01/07/2016] [Indexed: 12/25/2022]
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152
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Lora J, Hormaza JI, Herrero M. The Diversity of the Pollen Tube Pathway in Plants: Toward an Increasing Control by the Sporophyte. FRONTIERS IN PLANT SCIENCE 2016; 7:107. [PMID: 26904071 PMCID: PMC4746263 DOI: 10.3389/fpls.2016.00107] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Accepted: 01/20/2016] [Indexed: 05/06/2023]
Abstract
Plants, unlike animals, alternate multicellular diploid, and haploid generations in their life cycle. While this is widespread all along the plant kingdom, the size and autonomy of the diploid sporophyte and the haploid gametophyte generations vary along evolution. Vascular plants show an evolutionary trend toward a reduction of the gametophyte, reflected both in size and lifespan, together with an increasing dependence from the sporophyte. This has resulted in an overlooking of the importance of the gametophytic phase in the evolution of higher plants. This reliance on the sporophyte is most notorious along the pollen tube journey, where the male gametophytes have to travel a long way inside the sporophyte to reach the female gametophyte. Along evolution, there is a change in the scenery of the pollen tube pathway that favors pollen competition and selection. This trend, toward apparently making complicated what could be simple, appears to be related to an increasing control of the sporophyte over the gametophyte with implications for understanding plant evolution.
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Affiliation(s)
- Jorge Lora
- Department of Subtropical Fruit Crops, Instituto de Hortofruticultura Subtropical y Mediterránea La Mayora – University of Málaga – Consejo Superior de Investigaciones CientíficasMálaga, Spain
| | - José I. Hormaza
- Department of Subtropical Fruit Crops, Instituto de Hortofruticultura Subtropical y Mediterránea La Mayora – University of Málaga – Consejo Superior de Investigaciones CientíficasMálaga, Spain
| | - María Herrero
- Department of Pomology, Estación Experimental Aula Dei, Consejo Superior de Investigaciones CientíficasZaragoza, Spain
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153
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Lafon-Placette C, Vallejo-Marín M, Parisod C, Abbott RJ, Köhler C. Current plant speciation research: unravelling the processes and mechanisms behind the evolution of reproductive isolation barriers. THE NEW PHYTOLOGIST 2016; 209:29-33. [PMID: 26625345 DOI: 10.1111/nph.13756] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Affiliation(s)
- Clément Lafon-Placette
- Swedish University of Agricultural Sciences and Linnean Center of Plant Biology, Uppsala BioCenter, Uppsala, SE-75007, Sweden
| | - Mario Vallejo-Marín
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Christian Parisod
- Laboratory of Evolutionary Botany, Institute of Biology, University of Neuchâtel, Neuchâtel, CH-2000, Switzerland
| | - Richard J Abbott
- School of Biology, University of St Andrews, St Andrews, Fife, KY16 9TH, UK
| | - Claudia Köhler
- Swedish University of Agricultural Sciences and Linnean Center of Plant Biology, Uppsala BioCenter, Uppsala, SE-75007, Sweden
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154
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Kanaoka MM, Higashiyama T. Peptide signaling in pollen tube guidance. CURRENT OPINION IN PLANT BIOLOGY 2015; 28:127-36. [PMID: 26580200 DOI: 10.1016/j.pbi.2015.10.006] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 10/14/2015] [Accepted: 10/15/2015] [Indexed: 05/05/2023]
Abstract
Fertilization is an important life event for sexually reproductive plants. Part of this process involves precise regulation of a series of complicated cell-cell communications between male and female tissues. Through genetic and omics approaches, many genes and proteins involved in this process have been identified. Here we review our current understanding of signaling components during fertilization. We will especially focus on LURE peptides and related signaling events that are required for micropylar pollen tube guidance. We will also summarize signaling events required for termination of micropylar pollen tube guidance after fertilization.
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Affiliation(s)
- Masahiro M Kanaoka
- Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Tetsuya Higashiyama
- Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; JST, ERATO, Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan.
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155
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Liu Y, Joly V, Dorion S, Rivoal J, Matton DP. The Plant Ovule Secretome: A Different View toward Pollen-Pistil Interactions. J Proteome Res 2015; 14:4763-75. [PMID: 26387803 DOI: 10.1021/acs.jproteome.5b00618] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
During plant sexual reproduction, continuous exchange of signals between the pollen and the pistil (stigma, style, and ovary) plays important roles in pollen recognition and selection, establishing breeding barriers and, ultimately, leading to optimal seed set. After navigating through the stigma and the style, pollen tubes (PTs) reach their final destination, the ovule. This ultimate step is also regulated by numerous signals emanating from the embryo sac (ES) of the ovule. These signals encompass a wide variety of molecules, but species-specificity of the pollen-ovule interaction relies mainly on secreted proteins and their receptors. Isolation of candidate genes involved in pollen-pistil interactions has mainly relied on transcriptomic approaches, overlooking potential post-transcriptional regulation. To address this issue, ovule exudates were collected from the wild potato species Solanum chacoense using a tissue-free gravity-extraction method (tf-GEM). Combined RNA-seq and mass spectrometry-based proteomics led to the identification of 305 secreted proteins, of which 58% were ovule-specific. Comparative analyses using mature ovules (attracting PTs) and immature ovules (not attracting PTs) revealed that the last maturation step of ES development affected almost half of the ovule secretome. Of 128 upregulated proteins in anthesis stage, 106 were not regulated at the mRNA level, emphasizing the importance of post-transcriptional regulation in reproductive development.
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Affiliation(s)
- Yang Liu
- Institut de Recherche en Biologie Végétale, Département de Sciences Biologiques, Université de Montréal , 4101 rue Sherbrooke est, Montréal, Québec H1X 2B2, Canada
| | - Valentin Joly
- Institut de Recherche en Biologie Végétale, Département de Sciences Biologiques, Université de Montréal , 4101 rue Sherbrooke est, Montréal, Québec H1X 2B2, Canada
| | - Sonia Dorion
- Institut de Recherche en Biologie Végétale, Département de Sciences Biologiques, Université de Montréal , 4101 rue Sherbrooke est, Montréal, Québec H1X 2B2, Canada
| | - Jean Rivoal
- Institut de Recherche en Biologie Végétale, Département de Sciences Biologiques, Université de Montréal , 4101 rue Sherbrooke est, Montréal, Québec H1X 2B2, Canada
| | - Daniel P Matton
- Institut de Recherche en Biologie Végétale, Département de Sciences Biologiques, Université de Montréal , 4101 rue Sherbrooke est, Montréal, Québec H1X 2B2, Canada
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156
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Li HJ, Zhu SS, Zhang MX, Wang T, Liang L, Xue Y, Shi DQ, Liu J, Yang WC. Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance. THE PLANT CELL 2015; 27:2880-93. [PMID: 26462908 PMCID: PMC4682316 DOI: 10.1105/tpc.15.00370] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2015] [Accepted: 09/22/2015] [Indexed: 05/04/2023]
Abstract
In flowering plants, sperm cells are delivered to the embryo sac by a pollen tube guided by female signals. Both the gametic and synergid cells contribute to pollen tube attraction. Synergids secrete peptide signals that lure the tube, while the role of the gametic cells is unknown. Previously, we showed that CENTRAL CELL GUIDANCE (CCG) is essential for pollen tube attraction in Arabidopsis thaliana, but the molecular mechanism is unclear. Here, we identified CCG BINDING PROTEIN1 (CBP1) and demonstrated that it interacts with CCG, Mediator subunits, RNA polymerase II (Pol II), and central cell-specific AGAMOUS-like transcription factors. In addition, CCG interacts with TATA-box Binding Protein 1 and Pol II as a TFIIB-like transcription factor. CBP1-knockdown ovules are defective in pollen tube attraction. Expression profiling revealed that cysteine-rich peptide (CRP) transcripts were downregulated in ccg ovules. CCG and CBP1 coregulate a subset of CRPs in the central cell and the synergids, including the attractant LURE1. CBP1 is extensively expressed in multiple vegetative tissues and specifically in the central cell in reproductive growth. We propose that CBP1, via interaction with CCG and the Mediator complex, connects transcription factors and the Pol II machinery to regulate pollen tube attraction.
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Affiliation(s)
- Hong-Ju Li
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Shan-Shan Zhu
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Meng-Xia Zhang
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tong Wang
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China University of Chinese Academy of Sciences, Beijing 100049, China
| | - Liang Liang
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yong Xue
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China University of Chinese Academy of Sciences, Beijing 100049, China
| | - Dong-Qiao Shi
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Jie Liu
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Wei-Cai Yang
- State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
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157
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Leydon AR, Tsukamoto T, Dunatunga D, Qin Y, Johnson MA, Palanivelu R. Pollen Tube Discharge Completes the Process of Synergid Degeneration That Is Initiated by Pollen Tube-Synergid Interaction in Arabidopsis. PLANT PHYSIOLOGY 2015; 169:485-96. [PMID: 26229050 PMCID: PMC4577395 DOI: 10.1104/pp.15.00528] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Accepted: 07/28/2015] [Indexed: 05/19/2023]
Abstract
In flowering plant reproduction, pollen tube reception is the signaling system that results in pollen tube discharge, synergid degeneration, and successful delivery of male gametes (two sperm cells) to the site where they can fuse with female gametes (egg cell and central cell). Some molecules required for this complex and essential signaling exchange have been identified; however, fundamental questions about the nature of the interactions between the pollen tube and the synergid cells remain to be clarified. Here, we monitor pollen tube arrival, pollen tube discharge, and synergid degeneration in Arabidopsis (Arabidopsis thaliana) wild type and in male and female gametophytic mutants that disrupt development and function of the gametophytes. By combining assays used previously to study these interactions and an assay that facilitates simultaneous analysis of pollen tube discharge and synergid degeneration, we find that synergid degeneration could be initiated without pollen tube discharge. Our data support the hypothesis that pollen tube-synergid contact, or signaling via secreted molecules, initiates receptive synergid degeneration. We also find that when pollen tubes successfully burst, they always discharge into a degenerated synergid. In addition to this pollen tube-dependent promotion of synergid degeneration, we also show that a basal developmental pathway mediates synergid degeneration in the absence of pollination. Our results are consistent with the model that a complex set of interactions between the pollen tube and synergid cells promote receptive synergid degeneration.
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Affiliation(s)
- Alexander R Leydon
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912 (A.R.L., M.A.J.);School of Plant Sciences, University of Arizona, Tucson, Arizona 85721 (T.T., D.D., Y.Q., R.P.); andCenter for Genomics and Biotechnology and College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian Province, China (Y.Q.)
| | - Tatsuya Tsukamoto
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912 (A.R.L., M.A.J.);School of Plant Sciences, University of Arizona, Tucson, Arizona 85721 (T.T., D.D., Y.Q., R.P.); andCenter for Genomics and Biotechnology and College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian Province, China (Y.Q.)
| | - Damayanthi Dunatunga
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912 (A.R.L., M.A.J.);School of Plant Sciences, University of Arizona, Tucson, Arizona 85721 (T.T., D.D., Y.Q., R.P.); andCenter for Genomics and Biotechnology and College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian Province, China (Y.Q.)
| | - Yuan Qin
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912 (A.R.L., M.A.J.);School of Plant Sciences, University of Arizona, Tucson, Arizona 85721 (T.T., D.D., Y.Q., R.P.); andCenter for Genomics and Biotechnology and College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian Province, China (Y.Q.)
| | - Mark A Johnson
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912 (A.R.L., M.A.J.);School of Plant Sciences, University of Arizona, Tucson, Arizona 85721 (T.T., D.D., Y.Q., R.P.); andCenter for Genomics and Biotechnology and College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian Province, China (Y.Q.)
| | - Ravishankar Palanivelu
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912 (A.R.L., M.A.J.);School of Plant Sciences, University of Arizona, Tucson, Arizona 85721 (T.T., D.D., Y.Q., R.P.); andCenter for Genomics and Biotechnology and College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian Province, China (Y.Q.)
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158
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Woriedh M, Merkl R, Dresselhaus T. Maize EMBRYO SAC family peptides interact differentially with pollen tubes and fungal cells. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:5205-16. [PMID: 26071527 PMCID: PMC4526917 DOI: 10.1093/jxb/erv268] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
EMBRYO SAC1-4 (ES1-4) peptides belong to the defensin subgroup of cysteine-rich peptides known to mediate pollen tube burst in Zea mays (maize). ES1-4 are reported here to also be capable of inhibiting germination and growth of the maize fungal pathogens Fusarium graminearum and Ustilago maydis at higher concentrations. Dividing the peptides into smaller pieces showed that a 15-amino-acid peptide located in a highly variable loop region lacking similarity to other defensins or defensin-like peptides binds to maize pollen tube surfaces, causing swelling prior to burst. This peptide fragment and a second conserved neighbouring fragment showed suppression of fungal germination and growth. The two peptides caused swelling of fungal cells, production of reactive oxygen species, and finally the formation of big vacuoles prior to burst at high peptide concentration. Furthermore, peptide fragments were found to bind differently to fungal cells. In necrotrophic F. graminearum, a peptide fragment named ES-d bound only at cell surfaces whereas the peptide ES-c bound at cell surfaces and also accumulated inside cells. Conversely, in biotrophic U. maydis, both peptide fragments accumulated inside cells, but, if applied at higher concentration, ES-c but not ES-d accumulated mainly in vacuoles. Mapping of peptide interaction sites identified amino acids differing in pollen tube burst and fungal response reactions. In summary, these findings indicate that residues targeting pollen tube burst in maize are specific to the ES family, while residues targeting fungal growth are conserved within defensins and defensin-like peptides.
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Affiliation(s)
- Mayada Woriedh
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, 93053 Regensburg, Germany
| | - Rainer Merkl
- Institute of Biophysics and Physical Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, 93053 Regensburg, Germany
| | - Thomas Dresselhaus
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, 93053 Regensburg, Germany
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159
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Colling J, Tohge T, De Clercq R, Brunoud G, Vernoux T, Fernie AR, Makunga NP, Goossens A, Pauwels L. Overexpression of the Arabidopsis thaliana signalling peptide TAXIMIN1 affects lateral organ development. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:5337-49. [PMID: 26071531 PMCID: PMC4526920 DOI: 10.1093/jxb/erv291] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Lateral organ boundary formation is highly regulated by transcription factors and hormones such as auxins and brassinosteroids. However, in contrast to many other developmental processes in plants, no role for signalling peptides in the regulation of this process has been reported yet. The first characterization of the secreted cysteine-rich TAXIMIN (TAX) signalling peptides in Arabidopsis is presented here. TAX1 overexpression resulted in minor alterations in the primary shoot and root metabolome, abnormal fruit morphology, and fusion of the base of cauline leaves to stems forming a decurrent leaf attachment. The phenotypes at the paraclade junction match TAX1 promoter activity in this region and are similar to loss of LATERAL ORGAN FUSION (LOF) transcription factor function. Nevertheless, TAX1 expression was unchanged in lof1lof2 paraclade junctions and, conversely, LOF gene expression was unchanged in TAX1 overexpressing plants, suggesting TAX1 may act independently. This study identifies TAX1 as the first plant signalling peptide influencing lateral organ separation and implicates the existence of a peptide signal cascade regulating this process in Arabidopsis.
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Affiliation(s)
- Janine Colling
- Department of Plant Systems Biology, Flanders Institute for Biotechnology, (VIB), Technologiepark 927, B-9052 Gent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium Institute for Plant Biotechnology, Department of Genetics, Stellenbosch University, Stellenbosch, 7602, South Africa
| | - Takayuki Tohge
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Rebecca De Clercq
- Department of Plant Systems Biology, Flanders Institute for Biotechnology, (VIB), Technologiepark 927, B-9052 Gent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium
| | - Geraldine Brunoud
- Laboratoire de Reproduction et Développement des Plantes, CNRS, INRA, ENS Lyon, Lyon, France
| | - Teva Vernoux
- Laboratoire de Reproduction et Développement des Plantes, CNRS, INRA, ENS Lyon, Lyon, France
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Nokwanda P Makunga
- Institute for Plant Biotechnology, Department of Genetics, Stellenbosch University, Stellenbosch, 7602, South Africa Department of Botany and Zoology, Stellenbosch University, Stellenbosch, 7602, South Africa
| | - Alain Goossens
- Department of Plant Systems Biology, Flanders Institute for Biotechnology, (VIB), Technologiepark 927, B-9052 Gent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium
| | - Laurens Pauwels
- Department of Plant Systems Biology, Flanders Institute for Biotechnology, (VIB), Technologiepark 927, B-9052 Gent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium
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160
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Tavormina P, De Coninck B, Nikonorova N, De Smet I, Cammue BPA. The Plant Peptidome: An Expanding Repertoire of Structural Features and Biological Functions. THE PLANT CELL 2015; 27:2095-118. [PMID: 26276833 PMCID: PMC4568509 DOI: 10.1105/tpc.15.00440] [Citation(s) in RCA: 207] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Revised: 07/08/2015] [Accepted: 07/25/2015] [Indexed: 05/18/2023]
Abstract
Peptides fulfill a plethora of functions in plant growth, development, and stress responses. They act as key components of cell-to-cell communication, interfere with signaling and response pathways, or display antimicrobial activity. Strikingly, both the diversity and amount of plant peptides have been largely underestimated. Most characterized plant peptides to date acting as small signaling peptides or antimicrobial peptides are derived from nonfunctional precursor proteins. However, evidence is emerging on peptides derived from a functional protein, directly translated from small open reading frames (without the involvement of a precursor) or even encoded by primary transcripts of microRNAs. These novel types of peptides further add to the complexity of the plant peptidome, even though their number is still limited and functional characterization as well as translational evidence are often controversial. Here, we provide a comprehensive overview of the reported types of plant peptides, including their described functional and structural properties. We propose a novel, unifying peptide classification system to emphasize the enormous diversity in peptide synthesis and consequent complexity of the still expanding knowledge on the plant peptidome.
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Affiliation(s)
- Patrizia Tavormina
- Centre of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, University of Leuven (KU Leuven), B-3000 Leuven, Belgium Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium
| | - Barbara De Coninck
- Centre of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, University of Leuven (KU Leuven), B-3000 Leuven, Belgium Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium
| | - Natalia Nikonorova
- Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium
| | - Ive De Smet
- Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, United Kingdom Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom
| | - Bruno P A Cammue
- Centre of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, University of Leuven (KU Leuven), B-3000 Leuven, Belgium Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium
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161
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Qu LJ, Li L, Lan Z, Dresselhaus T. Peptide signalling during the pollen tube journey and double fertilization. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:5139-50. [PMID: 26068467 DOI: 10.1093/jxb/erv275] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Flowering seed plants (angiosperms) have evolved unique ways to protect their gametes from pathogen attack and from drying out. The female gametes (egg and central cell) are deeply embedded in the maternal tissues of the ovule inside the ovary, while the male gametes (sperm cells) are enclosed in the vegetative pollen tube cell. After germination of the pollen tube at the surface of papilla cells of the stigma the two immobile sperm cells are transported deep inside the sporophytic maternal tissues to be released inside the ovule for double fertilization. Angiosperms have evolved a number of hurdles along the pollen tube journey to prevent inbreeding and fertilization by alien sperm cells, and to maximize reproductive success. These pre-zygotic hybridization barriers require intensive communication between the male and female reproductive cells and the necessity to distinguish self from non-self interaction partners. General molecules such as nitric oxide (NO) or gamma-aminobutyric acid (GABA) therefore appear to play only a minor role in these species-specific communication events. The past 20 years have shown that highly polymorphic peptides play a leading role in all communication steps along the pollen tube pathway and fertilization. Here we review our current understanding of the role of peptides during reproduction with a focus on peptide signalling during self-incompatibility, pollen tube growth and guidance as well as sperm reception and gamete activation.
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Affiliation(s)
- Li-Jia Qu
- State Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences at College of Life Sciences, Peking University, Beijing 100871, China
| | - Ling Li
- State Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences at College of Life Sciences, Peking University, Beijing 100871, China
| | - Zijun Lan
- State Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences at College of Life Sciences, Peking University, Beijing 100871, China
| | - Thomas Dresselhaus
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, 93053 Regensburg, Germany
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162
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Same same but different: sperm-activating EC1 and ECA1 gametogenesis-related family proteins. Biochem Soc Trans 2015; 42:401-7. [PMID: 24646251 DOI: 10.1042/bst20140039] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
During double fertilization in Arabidopsis thaliana, the egg cell secretes small cysteine-rich EC1 (egg cell 1) proteins, which enable the arriving sperm pair to rapidly interact with the two female gametes. EC1 proteins are members of the large and unexplored group of ECA1 (early culture abundant 1) gametogenesis-related family proteins, characterized by a prolamin-like domain with six conserved cysteine residues that may form three pairs of disulfide bonds. The distinguishing marks of egg-cell-expressed EC1 proteins are, however, two short amino acid sequence motifs present in all EC1-like proteins. EC1 genes appear to encode the major CRPs (cysteine-rich proteins) expressed by the plant egg cell, and they are restricted to flowering plants, including the most basal extant flowering plant Amborella trichopoda. Many other ECA1 gametogenesis-related family genes are preferentially expressed in the synergid cell. Functional diversification among the ECA1 gametogenesis-related family is suggested by the different patterns of expression in the female gametophyte and the low primary sequence conservation.
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163
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Zhan H, Zhong Y, Yang Z, Xia H. Enzyme activities of Arabidopsis inositol polyphosphate kinases AtIPK2α and AtIPK2β are involved in pollen development, pollen tube guidance and embryogenesis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015; 82:758-71. [PMID: 25846941 DOI: 10.1111/tpj.12846] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2014] [Revised: 03/16/2015] [Accepted: 03/31/2015] [Indexed: 05/27/2023]
Abstract
Inositol polyphosphate kinase (IPK2) is a key component of inositol polyphosphate signaling. There are two highly homologous inositol polyphosphate kinases (AtIPK2α and AtIPK2β) in Arabidopsis. Previous studies that overexpressed or reduced the expression of AtIPK2α and AtIPK2β revealed their roles in auxiliary shoot branching, abiotic stress responses and root growth. Here, we report that AtIPK2α and AtIPK2β act redundantly during pollen development, pollen tube guidance and embryogenesis. Single knock-out mutants of atipk2α and atipk2β were indistinguishable from the wild type, whereas the atipk2α atipk2β double mutant could not be obtained. Detailed genetic and cytological investigations showed that the mutation of AtIPK2α and AtIPK2β resulted in severely reduced transmission of male gametophyte as a result of abnormal pollen development and defective pollen tube guidance. In addition, the early embryo development of the atipk2α atipk2β double mutant was also aborted. Expressing either catalytically inactive or substrate specificity-altered variants of AtIPK2β could not rescue the male gametophyte and embryogenesis defects of the atipk2α atipk2β double mutant, implying that the kinase activity of AtIPK2 is required for pollen development, pollen tube guidance and embryogenesis. Taken together, our results provide genetic evidence for the requirement of inositol polyphosphate signaling in plant sexual reproduction.
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Affiliation(s)
- Huadong Zhan
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, Hubei, 430072, China
| | - Yujiao Zhong
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, Hubei, 430072, China
| | - Zhongnan Yang
- College of Life and Environment Sciences, Shanghai Normal University, Shanghai, 200234, China
| | - Huijun Xia
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, Hubei, 430072, China
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164
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Cui X, Lv Y, Chen M, Nikoloski Z, Twell D, Zhang D. Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome. MOLECULAR PLANT 2015; 8:935-45. [PMID: 25670339 DOI: 10.1016/j.molp.2014.12.008] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Revised: 12/10/2014] [Accepted: 12/11/2014] [Indexed: 05/13/2023]
Abstract
The birth of new genes in genomes is an important evolutionary event. Several studies reveal that new genes in animals tend to be preferentially expressed in male reproductive tissues such as testis (Betrán et al., 2002; Begun et al., 2007; Dubruille et al., 2012), and thus an "out of testis" hypothesis for the emergence of new genes has been proposed (Vinckenbosch et al., 2006; Kaessmann, 2010). However, such phenomena have not been examined in plant species. Here, by employing a phylostratigraphic method, we dated the origin of protein-coding genes in rice and Arabidopsis thaliana and observed a number of young genes in both species. These young genes tend to encode short extracellular proteins, which may be involved in rapid evolving processes, such as reproductive barriers, species specification, and anti-microbial processes. Further analysis of transcriptome age indexes across different tissues revealed that male reproductive cells express a phylogenetically younger transcriptome than other plant tissues. Compared with sporophytic tissues, the young transcriptomes of the male gametophyte displayed greater complexity and diversity, which included a higher ratio of anti-sense and inter-genic transcripts, reflecting a pervasive transcription state that facilitated the emergence of new genes. Here, we propose that pollen may act as an "innovation incubator" for the birth of de novo genes. With cases of male-biased expression of young genes reported in animals, the "new genes out of the male" model revealed a common evolutionary force that drives reproductive barriers, species specification, and the upgrading of defensive mechanisms against pathogens.
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Affiliation(s)
- Xiao Cui
- State Key Laboratory of Hybrid Rice, Joint International Research Laboratory of Metabolic & Developmental Sciences, SJTU-Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yang Lv
- State Key Laboratory of Hybrid Rice, Joint International Research Laboratory of Metabolic & Developmental Sciences, SJTU-Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Miaolin Chen
- State Key Laboratory of Hybrid Rice, Joint International Research Laboratory of Metabolic & Developmental Sciences, SJTU-Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Zoran Nikoloski
- Systems Biology and Mathematical Modeling Group, University of Potsdam and Max-Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam 114424, Germany
| | - David Twell
- Department of Biology, University of Leicester, Leicester LE1 7RA, UK
| | - Dabing Zhang
- State Key Laboratory of Hybrid Rice, Joint International Research Laboratory of Metabolic & Developmental Sciences, SJTU-Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China; Joint International Research Laboratory of Metabolic & Developmental Sciences, University of Adelaide-Shanghai Jiao Tong University Joint Centre for Agriculture and Health, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia.
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165
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Susaki D, Takeuchi H, Tsutsui H, Kurihara D, Higashiyama T. Live Imaging and Laser Disruption Reveal the Dynamics and Cell-Cell Communication During Torenia fournieri Female Gametophyte Development. PLANT & CELL PHYSIOLOGY 2015; 56:1031-41. [PMID: 25713175 DOI: 10.1093/pcp/pcv031] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2014] [Accepted: 02/14/2015] [Indexed: 05/08/2023]
Abstract
The female gametophytes of many flowering plants contain one egg cell, one central cell, two synergid cells and three antipodal cells with respective morphological characteristics and functions. These cells are formed by cellularization of a multinuclear female gametophyte. However, the dynamics and mechanisms of female gametophyte development remain largely unknown due to the lack of a system to visualize directly and manipulate female gametophytes in living material. Here, we established an in vitro ovule culture system to examine female gametophyte development in Torenia fournieri, a unique plant species with a protruding female gametophyte. The four-nucleate female gametophyte became eight nucleate by the final (third) mitosis and successively cellularized and matured to attract a pollen tube. The duration of final mitosis was 28 ± 6.5 min, and cellularization was completed in 54 ± 20 min after the end of the third mitosis. Fusion of polar nuclei in the central cell occurred in 13.1 ± 1.1 h, and onset of expression of LURE2, a pollen tube attractant gene, was visualized by a green fluorescent protein reporter 10.7 ± 2.3 h after cellularization. Laser disruption analysis demonstrated that the egg and central cells were required for synergid cells to acquire the pollen tube attraction function. Moreover, aberrant nuclear positioning and down-regulation of LURE2 were observed in one of the two synergid cells after disrupting an immature egg cell, suggesting that cell specification was affected. Our system provides insights into the precise dynamics and mechanisms of female gametophyte development in T. fournieri.
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Affiliation(s)
- Daichi Susaki
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan
| | - Hidenori Takeuchi
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan
| | - Hiroki Tsutsui
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan
| | - Daisuke Kurihara
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan
| | - Tetsuya Higashiyama
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602 Japan
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166
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Lindner H, Kessler SA, Müller LM, Shimosato-Asano H, Boisson-Dernier A, Grossniklaus U. TURAN and EVAN mediate pollen tube reception in Arabidopsis Synergids through protein glycosylation. PLoS Biol 2015; 13:e1002139. [PMID: 25919390 PMCID: PMC4412406 DOI: 10.1371/journal.pbio.1002139] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 03/19/2015] [Indexed: 11/18/2022] Open
Abstract
Pollen tube (PT) reception in flowering plants describes the crosstalk between the male and female gametophytes upon PT arrival at the synergid cells of the ovule. It leads to PT growth arrest, rupture, and sperm cell release, and is thus essential to ensure double fertilization. Here, we describe TURAN (TUN) and EVAN (EVN), two novel members of the PT reception pathway that is mediated by the FERONIA (FER) receptor-like kinase (RLK). Like fer, mutations in these two genes lead to PT overgrowth inside the female gametophyte (FG) without PT rupture. Mapping by next-generation sequencing, cytological analysis of reporter genes, and biochemical assays of glycoproteins in RNAi knockdown mutants revealed both genes to be involved in protein N-glycosylation in the endoplasmic reticulum (ER). TUN encodes a uridine diphosphate (UDP)-glycosyltransferase superfamily protein and EVN a dolichol kinase. In addition to their common role during PT reception in the synergids, both genes have distinct functions in the pollen: whereas EVN is essential for pollen development, TUN is required for PT growth and integrity by affecting the stability of the pollen-specific FER homologs ANXUR1 (ANX1) and ANX2. ANX1- and ANX2-YFP reporters are not expressed in tun pollen grains, but ANX1-YFP is degraded via the ER-associated degradation (ERAD) pathway, likely underlying the anx1/2-like premature PT rupture phenotype of tun mutants. Thus, as in animal sperm–egg interactions, protein glycosylation is essential for the interaction between the female and male gametophytes during PT reception to ensure fertilization and successful reproduction. Protein glycosylation is essential for gametophyte interactions between the male pollen tube and the female ovule in plants, reminiscent of gamete interactions during fertilization in mammals. In flowering plants, gametes are produced by the haploid, multicellular male (pollen), and female (embryo sac) gametophytes, which develop within the reproductive organs of the flower. Successful fertilization depends on delivery of the sperm cells to the embryo sac, which is embedded in the ovule, by the pollen tube. Upon arrival of the pollen tube at the opening of the ovule, crosstalk between male and female gametophytes, known as pollen tube reception, ensues; the pollen tube slows or stops its growth, then resumes rapid growth, and finally bursts to release the sperm cells and effect double fertilization. Although several members of the pollen tube reception pathway, including the receptor-like kinase FERONIA, have been identified, the molecular mechanisms underlying this communication process remain unclear. Here, we show that protein N-glycosylation is required for normal pollen tube reception. A mutant screen identified two genes, TURAN and EVAN, which are involved in protein N-glycosylation in the endoplasmic reticulum. Both genes act in the FERONIA-mediated pollen tube reception pathway, which is impaired in these mutants. Thus, in plants, a “dual recognition system,” involving interactions between both protein and glycosyl residues on the surface of male and female gametophytes, appears to be required for successful pollen tube reception, conceptually similar to sperm–egg interactions in mammals, for which N-glycosylation of cell surface proteins also plays an important role.
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Affiliation(s)
- Heike Lindner
- Institute of Plant Biology & Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zürich, Switzerland
| | - Sharon A. Kessler
- Institute of Plant Biology & Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zürich, Switzerland
| | - Lena M. Müller
- Institute of Plant Biology & Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zürich, Switzerland
| | - Hiroko Shimosato-Asano
- Institute of Plant Biology & Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zürich, Switzerland
| | - Aurélien Boisson-Dernier
- Institute of Plant Biology & Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zürich, Switzerland
| | - Ueli Grossniklaus
- Institute of Plant Biology & Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zürich, Switzerland
- * E-mail:
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167
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Maruyama D, Völz R, Takeuchi H, Mori T, Igawa T, Kurihara D, Kawashima T, Ueda M, Ito M, Umeda M, Nishikawa SI, Groß-Hardt R, Higashiyama T. Rapid Elimination of the Persistent Synergid through a Cell Fusion Mechanism. Cell 2015; 161:907-18. [PMID: 25913191 DOI: 10.1016/j.cell.2015.03.018] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2015] [Revised: 02/09/2015] [Accepted: 02/20/2015] [Indexed: 11/19/2022]
Abstract
In flowering plants, fertilization-dependent degeneration of the persistent synergid cell ensures one-on-one pairings of male and female gametes. Here, we report that the fusion of the persistent synergid cell and the endosperm selectively inactivates the persistent synergid cell in Arabidopsis thaliana. The synergid-endosperm fusion causes rapid dilution of pre-secreted pollen tube attractant in the persistent synergid cell and selective disorganization of the synergid nucleus during the endosperm proliferation, preventing attractions of excess number of pollen tubes (polytubey). The synergid-endosperm fusion is induced by fertilization of the central cell, while the egg cell fertilization predominantly activates ethylene signaling, an inducer of the synergid nuclear disorganization. Therefore, two female gametes (the egg and the central cell) control independent pathways yet coordinately accomplish the elimination of the persistent synergid cell by double fertilization.
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Affiliation(s)
- Daisuke Maruyama
- Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; Institute for Advanced Research, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; Temasek Life Sciences Laboratory and Department of Biological Sciences, National University of Singapore, Singapore 117604, Singapore.
| | - Ronny Völz
- Center for Plant Molecular Biology (ZMBP), University of Tübingen, 72076 Tübingen, Germany; Center for Desert Agriculture, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Hidenori Takeuchi
- JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Toshiyuki Mori
- Waseda Institute for Advanced Study, Waseda University, 1-6-1 Nishiwaseda, Shinjuku-ku, Tokyo 169-8050, Japan
| | - Tomoko Igawa
- Graduate School of Horticulture, Chiba University, 648 Matsudo, Matsudo-City, Chiba 271-8510, Japan
| | - Daisuke Kurihara
- JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Tomokazu Kawashima
- Temasek Life Sciences Laboratory and Department of Biological Sciences, National University of Singapore, Singapore 117604, Singapore; Gregor Mendel Institute, Dr-BohrGasse 3, 1030 Vienna, Austria
| | - Minako Ueda
- Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Masaki Ito
- Graduate School of Bioagricultural Sciences and School of Agricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Masaaki Umeda
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan; JST, CREST, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Shuh-Ichi Nishikawa
- Department of Life and Food Science, Graduate School of Science, Niigata University, 8050, Ikarashi 2-no-cho, Nishi-ku, Niigata 950-2181, Japan
| | - Rita Groß-Hardt
- Center for Plant Molecular Biology (ZMBP), University of Tübingen, 72076 Tübingen, Germany; Center for Biomolecular Interactions Bremen, University of Bremen, Leobener Straße NW2 28359, Germany
| | - Tetsuya Higashiyama
- Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
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168
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Shenton MR, Ohyanagi H, Wang ZX, Toyoda A, Fujiyama A, Nagata T, Feng Q, Han B, Kurata N. Rapid turnover of antimicrobial-type cysteine-rich protein genes in closely related Oryza genomes. Mol Genet Genomics 2015; 290:1753-70. [DOI: 10.1007/s00438-015-1028-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Accepted: 03/03/2015] [Indexed: 01/11/2023]
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169
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Neukermans J, Inzé A, Mathys J, De Coninck B, van de Cotte B, Cammue BPA, Van Breusegem F. ARACINs, Brassicaceae-specific peptides exhibiting antifungal activities against necrotrophic pathogens in Arabidopsis. PLANT PHYSIOLOGY 2015; 167:1017-29. [PMID: 25593351 PMCID: PMC4348783 DOI: 10.1104/pp.114.255505] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Plants have developed a variety of mechanisms to cope with abiotic and biotic stresses. In a previous subcellular localization study of hydrogen peroxide-responsive proteins, two peptides with an unknown function (designated ARACIN1 and ARACIN2) have been identified. These peptides are structurally very similar but are transcriptionally differentially regulated during abiotic stresses during Botrytis cinerea infection or after benzothiadiazole and methyl jasmonate treatments. In Arabidopsis (Arabidopsis thaliana), these paralogous genes are positioned in tandem within a cluster of pathogen defense-related genes. Both ARACINs are small, cationic, and hydrophobic peptides, known characteristics for antimicrobial peptides. Their genes are expressed in peripheral cell layers prone to pathogen entry and are lineage specific to the Brassicaceae family. In vitro bioassays demonstrated that both ARACIN peptides have a direct antifungal effect against the agronomically and economically important necrotrophic fungi B. cinerea, Alternaria brassicicola, Fusarium graminearum, and Sclerotinia sclerotiorum and yeast (Saccharomyces cerevisiae). In addition, transgenic Arabidopsis plants that ectopically express ARACIN1 are protected better against infections with both B. cinerea and A. brassicicola. Therefore, we can conclude that both ARACINs act as antimicrobial peptides.
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Affiliation(s)
- Jenny Neukermans
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, B-9052 Ghent, Belgium (J.N., A.I., B.D.C., B.v.d.C., B.P.A.C., F.V.B.); Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (J.N., A.I., B.v.d.C., F.V.B.); andCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, 3001 Heverlee, Belgium (J.N., J.M., B.D.C, B.P.A.C.)
| | - Annelies Inzé
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, B-9052 Ghent, Belgium (J.N., A.I., B.D.C., B.v.d.C., B.P.A.C., F.V.B.); Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (J.N., A.I., B.v.d.C., F.V.B.); andCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, 3001 Heverlee, Belgium (J.N., J.M., B.D.C, B.P.A.C.)
| | - Janick Mathys
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, B-9052 Ghent, Belgium (J.N., A.I., B.D.C., B.v.d.C., B.P.A.C., F.V.B.); Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (J.N., A.I., B.v.d.C., F.V.B.); andCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, 3001 Heverlee, Belgium (J.N., J.M., B.D.C, B.P.A.C.)
| | - Barbara De Coninck
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, B-9052 Ghent, Belgium (J.N., A.I., B.D.C., B.v.d.C., B.P.A.C., F.V.B.); Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (J.N., A.I., B.v.d.C., F.V.B.); andCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, 3001 Heverlee, Belgium (J.N., J.M., B.D.C, B.P.A.C.)
| | - Brigitte van de Cotte
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, B-9052 Ghent, Belgium (J.N., A.I., B.D.C., B.v.d.C., B.P.A.C., F.V.B.); Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (J.N., A.I., B.v.d.C., F.V.B.); andCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, 3001 Heverlee, Belgium (J.N., J.M., B.D.C, B.P.A.C.)
| | - Bruno P A Cammue
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, B-9052 Ghent, Belgium (J.N., A.I., B.D.C., B.v.d.C., B.P.A.C., F.V.B.); Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (J.N., A.I., B.v.d.C., F.V.B.); andCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, 3001 Heverlee, Belgium (J.N., J.M., B.D.C, B.P.A.C.)
| | - Frank Van Breusegem
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie, B-9052 Ghent, Belgium (J.N., A.I., B.D.C., B.v.d.C., B.P.A.C., F.V.B.); Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (J.N., A.I., B.v.d.C., F.V.B.); andCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, 3001 Heverlee, Belgium (J.N., J.M., B.D.C, B.P.A.C.)
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170
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Nagahara S, Takeuchi H, Higashiyama T. Generation of a homozygous fertilization-defective gcs1 mutant by heat-inducible removal of a rescue gene. PLANT REPRODUCTION 2015; 28:33-46. [PMID: 25673573 PMCID: PMC4333230 DOI: 10.1007/s00497-015-0256-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Accepted: 01/23/2015] [Indexed: 05/10/2023]
Abstract
Key message: New gametic homozygous mutants. In angiosperms, a haploid male gamete (sperm cell) fuses with a haploid female gamete (egg cell) during fertilization to form a zygote carrying paternally and maternally derived chromosomes. Several fertilization-defective mutants in Arabidopsis thaliana, including a generative cell-specific 1 (gcs1)/hapless 2 mutant, the sperm cells of which are unable to fuse with female gametes, can only be maintained as heterozygous lines due to the infertile male or female gametes. Here, we report successful generation of a gcs1 homozygous mutant by heat-inducible removal of the GCS1 transgene. Using the gcs1 homozygous mutant as male, the defect in gamete fusion was observed with great frequency; in our direct observation by semi-in vivo fertilization assay using ovules, 100 % of discharged sperm cells in culture failed to show gamete fusion. More than 70 % of ovules in the pistil received a second pollen tube as attempted fertilization recovery. Moreover, gcs1 mutant sperm cells could fertilize female gametes at a low frequency in the pistil. This strategy to generate homozygous fertilization-defective mutants will facilitate novel approaches in plant reproduction research.
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Affiliation(s)
- Shiori Nagahara
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 Japan
| | - Hidenori Takeuchi
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 Japan
- JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 Japan
| | - Tetsuya Higashiyama
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 Japan
- JST ERATO Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 Japan
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 Japan
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171
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Li L, Wurtele ES. The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean. PLANT BIOTECHNOLOGY JOURNAL 2015; 13:177-87. [PMID: 25146936 PMCID: PMC4345402 DOI: 10.1111/pbi.12238] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2014] [Revised: 06/30/2014] [Accepted: 07/03/2014] [Indexed: 05/19/2023]
Abstract
The genome of each species contains as high as 8% of genes that are uniquely present in that species. Little is known about the functional significance of these so-called species specific or orphan genes. The Arabidopsis thaliana gene Qua-Quine Starch (QQS) is species specific. Here, we show that altering QQS expression in Arabidopsis affects carbon partitioning to both starch and protein. We hypothesized QQS may be conserved in a feature other than primary sequence, and as such could function to impact composition in another species. To test the potential of QQS in affecting composition in an ectopic species, we introduced QQS into soybean. Soybean T1 lines expressing QQS have up to 80% decreased leaf starch and up to 60% increased leaf protein; T4 generation seeds from field-grown plants contain up to 13% less oil, while protein is increased by up to 18%. These data broaden the concept of QQS as a modulator of carbon and nitrogen allocation, and demonstrate that this species-specific gene can affect the seed composition of an agronomic species thought to have diverged from Arabidopsis 100 million years ago.
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Affiliation(s)
- Ling Li
- Department of Genetics, Development and Cell Biology, Iowa State UniversityAmes, IA, USA
| | - Eve Syrkin Wurtele
- Department of Genetics, Development and Cell Biology, Iowa State UniversityAmes, IA, USA
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172
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Higashiyama T, Takeuchi H. The mechanism and key molecules involved in pollen tube guidance. ANNUAL REVIEW OF PLANT BIOLOGY 2015; 66:393-413. [PMID: 25621518 DOI: 10.1146/annurev-arplant-043014-115635] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
During sexual reproduction of flowering plants, pollen tube guidance by pistil tissue is critical for the delivery of nonmotile sperm cells to female gametes. Multistep controls of pollen tube guidance can be divided into two phases: preovular guidance and ovular guidance. During preovular guidance, various female molecules, including stimulants for pollen germination and pollen tube growth, are provided to support tube growth toward the ovary, where the ovules are located. After entering the ovary, pollen tubes receive directional cues from their respective target ovules, including attractant peptides for precise, species-preferential attraction. Successful pollen tube guidance in the pistil requires not only nutritional and directional controls but also competency controls to make pollen tubes responsive to guidance cues, regulation to terminate growth once a pollen tube arrives at the target, and strategies to stop ovular attraction depending on the fertilization of female gametes.
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173
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Kessler SA, Lindner H, Jones DS, Grossniklaus U. Functional analysis of related CrRLK1L receptor-like kinases in pollen tube reception. EMBO Rep 2014; 16:107-15. [PMID: 25490905 DOI: 10.15252/embr.201438801] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
The Catharanthus roseus Receptor-Like Kinase 1-like (CrRLK1L) family of 17 receptor-like kinases (RLKs) has been implicated in a variety of signaling pathways in Arabidopsis, ranging from pollen tube (PT) reception and tip growth to hormonal responses. The extracellular domains of these RLKs have malectin-like domains predicted to bind carbohydrate moieties. Domain swap analysis showed that the extracellular domains of the three members analyzed (FER, ANX1, HERK1) are not interchangeable, suggesting distinct upstream components, such as ligands and/or co-factors. In contrast, their intercellular domains are functionally equivalent for PT reception, indicating that they have common downstream targets in their signaling pathways. The kinase domain is necessary for FER function, but kinase activity itself is not, indicating that other kinases may be involved in signal transduction during PT reception.
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Affiliation(s)
- Sharon A Kessler
- Institute of Plant Biology & Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA
| | - Heike Lindner
- Institute of Plant Biology & Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland
| | - Daniel S Jones
- Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA
| | - Ueli Grossniklaus
- Institute of Plant Biology & Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland
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174
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Goyal RK, Mattoo AK. Multitasking antimicrobial peptides in plant development and host defense against biotic/abiotic stress. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2014; 228:135-49. [PMID: 25438794 DOI: 10.1016/j.plantsci.2014.05.012] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Revised: 05/12/2014] [Accepted: 05/15/2014] [Indexed: 05/20/2023]
Abstract
Crop losses due to pathogens are a major threat to global food security. Plants employ a multilayer defense against a pathogen including the use of physical barriers (cell wall), induction of hypersensitive defense response (HR), resistance (R) proteins, and synthesis of antimicrobial peptides (AMPs). Unlike a complex R gene-mediated immunity, AMPs directly target diverse microbial pathogens. Many a times, R-mediated immunity breaks down and plant defense is compromised. Although R-gene dependent pathogen resistance has been well studied, comparatively little is known about the interactions of AMPs with host defense and physiology. AMPs are ubiquitous, low molecular weight peptides that display broad spectrum resistance against bacteria, fungi and viruses. In plants, AMPs are mainly classified into cyclotides, defensins, thionins, lipid transfer proteins, snakins, and hevein-like vicilin-like and knottins. Genetic distance lineages suggest their conservation with minimal effect of speciation events during evolution. AMPs provide durable resistance in plants through a combination of membrane lysis and cellular toxicity of the pathogen. Plant hormones - gibberellins, ethylene, jasmonates, and salicylic acid, are among the physiological regulators that regulate the expression of AMPs. Transgenically produced AMP-plants have become a means showing that AMPs are able to mitigate host defense responses while providing durable resistance against pathogens.
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Affiliation(s)
| | - Autar K Mattoo
- Sustainable Agricultural Systems Laboratory, United States Department of Agriculture, ARS's Henry A. Wallace Beltsville Agricultural Research Center, Beltsville, MD 20705, USA.
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175
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Kawashima T, Maruyama D, Shagirov M, Li J, Hamamura Y, Yelagandula R, Toyama Y, Berger F. Dynamic F-actin movement is essential for fertilization in Arabidopsis thaliana. eLife 2014; 3. [PMID: 25303363 PMCID: PMC4221737 DOI: 10.7554/elife.04501] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Accepted: 10/09/2014] [Indexed: 12/23/2022] Open
Abstract
In animals, microtubules and centrosomes direct the migration of gamete pronuclei for fertilization. By contrast, flowering plants have lost essential components of the centrosome, raising the question of how flowering plants control gamete nuclei migration during fertilization. Here, we use Arabidopsis thaliana to document a novel mechanism that regulates F-actin dynamics in the female gametes and is essential for fertilization. Live imaging shows that F-actin structures assist the male nucleus during its migration towards the female nucleus. We identify a female gamete-specific Rho-GTPase that regulates F-actin dynamics and further show that actin-myosin interactions are also involved in male gamete nucleus migration. Genetic analyses and imaging indicate that microtubules are dispensable for migration and fusion of male and female gamete nuclei. The innovation of a novel actin-based mechanism of fertilization during plant evolution might account for the complete loss of the centrosome in flowering plants.
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Affiliation(s)
- Tomokazu Kawashima
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
| | - Daisuke Maruyama
- Nagoya Institute of Transformative Bio-Molecules, Nagoya University, Nagoya, Japan
| | - Murat Shagirov
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
| | - Jing Li
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
| | - Yuki Hamamura
- Division of Biological Sciences, Nagoya University Graduate School of Science, Nagoya, Japan
| | - Ramesh Yelagandula
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
| | - Yusuke Toyama
- Mechanobiology Institute, National University of Singapore, Singapore, Singapore
| | - Frédéric Berger
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
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176
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Li YL, Dai XR, Yue X, Gao XQ, Zhang XS. Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues. PLANTA 2014; 240:713-28. [PMID: 25048445 DOI: 10.1007/s00425-014-2123-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Accepted: 07/03/2014] [Indexed: 05/14/2023]
Abstract
Maize 1,491 small secreted peptides were identified, which were classified according to the character of peptide sequences. Partial SSP gene expressions in reproductive tissues were determined by qRT-PCR. Small secreted peptides (SSPs) are important cell-cell communication messengers in plants. Most information on plant SSPs come from Arabidopsis thaliana and Oryza sativa, while little is known about the SSPs of other grass species such as maize (Zea mays). In this study, we identified 1,491 SSP genes from maize genomic sequences. These putative SSP genes were distributed throughout the ten maize chromosomes. Among them, 611 SSPs were classified into 198 superfamilies according to their conserved domains, and 725 SSPs with four or more cysteines at their C-termini shared similar cysteine arrangements with their counterparts in other plant species. Moreover, the SSPs requiring post-translational modification, as well as defensin-like (DEFL) proteins, were identified. Further, the expression levels of 110 SSP genes were analyzed in reproductive tissues, including male flower, pollen, silk, and ovary. Most of the genes encoding basal-layer antifungal peptide-like, small coat proteins-like, thioredoxin-like proteins, γ-thionins-like, and DEFL proteins showed high expression levels in the ovary and male flower compared with their levels in silk and mature pollen. The rapid alkalinization factor-like genes were highly expressed only in the mature ovary and mature pollen, and pollen Ole e 1-like genes showed low expression in silk. The results of this study provide basic information for further analysis of SSP functions in the reproductive process of maize.
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Affiliation(s)
- Ye Long Li
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271018, Shandong, China
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177
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Proteomics Advances in the Understanding of Pollen-Pistil Interactions. Proteomes 2014; 2:468-484. [PMID: 28250391 PMCID: PMC5302694 DOI: 10.3390/proteomes2040468] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Revised: 09/22/2014] [Accepted: 09/23/2014] [Indexed: 12/19/2022] Open
Abstract
The first key point to the successful pollination and fertilization in plants is the pollen-pistil interaction, referring to the cellular and molecular levels, which mainly involve the haploid pollen and the diploid pistil. The process is defined as “siphonogamy”, which starts from the capture of pollen by the epidermis of stigma and ends up with the fusion of sperm with egg. So far, the studies of the pollen-pistil interaction have been explicated around the self-compatibility and self-incompatibility (SI) process in different species from the molecular genetics and biochemistry to cellular and signal levels, especially the mechanism of SI system. Among them, numerous proteomics studies based on the advanced technologies from gel-system to gel-free system were conducted, focusing on the interaction, in order to uncover the mechanism of the process. The current review mainly focuses on the recent developments in proteomics of pollen-pistil interaction from two aspects: self-incompatible and compatible pollination. It might provide a comprehensive insight on the proteins that were involved in the regulation of pollen-pistil interaction.
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178
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Male-female communication triggers calcium signatures during fertilization in Arabidopsis. Nat Commun 2014; 5:4645. [PMID: 25145880 PMCID: PMC4143946 DOI: 10.1038/ncomms5645] [Citation(s) in RCA: 129] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2013] [Accepted: 07/09/2014] [Indexed: 12/11/2022] Open
Abstract
Cell-cell communication and interaction is critical during fertilization and triggers free cytosolic calcium ([Ca2+]cyto) as a key signal for egg activation and a polyspermy block in animal oocytes. Fertilization in flowering plants is more complex, involving interaction of a pollen tube with egg adjoining synergid cells, culminating in release of two sperm cells and their fusion with the egg and central cell, respectively. Here, we report the occurrence and role of [Ca2+]cyto signals during the entire double fertilization process in Arabidopsis. [Ca2+]cyto oscillations are initiated in synergid cells after physical contact with the pollen tube apex. In egg and central cells, a short [Ca2+]cyto transient is associated with pollen tube burst and sperm cell arrival. A second extended [Ca2+]cyto transient solely in the egg cell is correlated with successful fertilization. Thus, each female cell type involved in double fertilization displays a characteristic [Ca2+]cyto signature differing by timing and behaviour from [Ca2+]cyto waves reported in mammals.
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179
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Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc Natl Acad Sci U S A 2014; 111:11900-5. [PMID: 25074908 DOI: 10.1073/pnas.1323104111] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Increasing evidence suggests that nuclear migration is important for eukaryotic development. Although nuclear migration is conserved in plants, its importance for plant development has not yet been established. The most extraordinary plant nuclear migration events involve plant fertilization, which is starkly different from that of animals. Instead of evolving self-propelled sperm cells (SCs), plants use pollen tubes to deliver SCs, in which the pollen vegetative nucleus (VN) and the SCs migrate as a unit toward the ovules, a fundamental but barely understood process. Here, we report that WPP domain-interacting proteins (WIPs) and their binding partners the WPP domain-interacting tail-anchored proteins (WITs) are essential for pollen nuclear migration. Loss-of-function mutations in WIT and/or WIP gene families resulted in impaired VN movement, inefficient SC delivery, and defects in pollen tube reception. WIPs are Klarsicht/ANC-1/Syne-1 Homology (KASH) analogs in plants. KASH proteins are key players in animal nuclear migration. Thus, this study not only reveals an important nuclear migration mechanism in plant fertilization but also, suggests that similar nuclear migration machinery is conserved between plants and animals.
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180
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Sequence, structural and expression divergence of duplicate genes in the bovine genome. PLoS One 2014; 9:e102868. [PMID: 25054921 PMCID: PMC4108385 DOI: 10.1371/journal.pone.0102868] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Accepted: 06/22/2014] [Indexed: 11/19/2022] Open
Abstract
Gene duplication is a widespread phenomenon in genome evolution, and it has been proposed to serve as an engine of evolutionary innovation. In the present study, we performed the first comprehensive analysis of duplicate genes in the bovine genome. A total of 3131 putative duplicated gene pairs were identified, including 712 cattle-specific duplicate gene pairs unevenly distributed across the genome, which are significantly enriched for specific biological functions including immunity, growth, digestion, reproduction, embryonic development, inflammatory response, and defense response to bacterium. Around 97.1% (87.8%) of (cattle-specific) duplicate gene pairs were found to have distinct exon-intron structures. Analysis of gene expression by RNA-Seq and sequence divergence (synonymous or non-synonymous) revealed that expression divergence is correlated with sequence divergence, as has been previously observed in other species. This analysis also led to the identification of a subset of cattle-specific duplicate gene pairs exhibiting very high expression divergence. Interestingly, further investigation revealed a significant relationship between structural and expression divergence while controlling for the effect of synonymous sequence divergence. Together these results provide further insight into duplicate gene sequence and expression divergence in cattle, and their potential contributions to phenotypic divergence.
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181
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Mizuta Y, Higashiyama T. Antisense gene inhibition by phosphorothioate antisense oligonucleotide in Arabidopsis pollen tubes. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2014; 78:516-26. [PMID: 24495108 DOI: 10.1111/tpj.12461] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2013] [Revised: 01/17/2014] [Accepted: 01/22/2014] [Indexed: 05/18/2023]
Abstract
Sexual reproduction is an essential biological event for proliferation of plants. The pollen tube (PT) that contained male gametes elongates and penetrates into the pistils for successful fertilization. However, the molecular mechanisms of plant fertilization remain largely unknown. Here, we report a transient inhibition of gene function using phosphorothioate antisense oligodeoxynucleotides (AS-ODNs) without cytofectin, which is a simple way to study gene function in Arabidopsis thaliana PTs. The PTs treated with AS-ODNs against both ANX1 and ANX2 showed short, knotted, and ruptured morphology in vitro/semi-in vitro, whereas normal PT growth was shown in its sense control in vitro/semi-in vitro. PT growth was impaired in a manner dependent on the dose of AS-ODNs against both ANX1 and ANX2 above 10 μm. The treatment with AS-ODNs against ROP1 and CalS5 resulted in waving PTs and in short PTs with a few callose plugs, respectively. The expression levels of the target genes in PTs treated with their AS-ODNs were lower than or similar to those in the sense control, indicating that the inhibition was directly or indirectly related to the expression of each mRNA. The AS-ODN against fluorescent protein (sGFP) led to reduced sGFP expression, suggesting that the AS-ODN suppressed protein expression. This method will enable the identification of reproductively important genes in Arabidopsis PTs.
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Affiliation(s)
- Yoko Mizuta
- Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan; JST, ERATO, Higashiyama Live-Holonics Project, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan
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182
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Nishihara M, Yamada E, Saito M, Fujita K, Takahashi H, Nakatsuka T. Molecular characterization of mutations in white-flowered torenia plants. BMC PLANT BIOLOGY 2014; 14:86. [PMID: 24694353 PMCID: PMC4234012 DOI: 10.1186/1471-2229-14-86] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Accepted: 03/20/2014] [Indexed: 05/18/2023]
Abstract
BACKGROUND Torenia (Torenia fournieri Lind.) is a model plant increasingly exploited in studies in various disciplines, including plant engineering, biochemistry, physiology, and ecology. Additionally, cultivars with different flower colors have been bred and made commercially available. Flower color in torenia is mainly attributed to the accumulation of anthocyanins, but the molecular mechanisms inducing flower color mutations in torenia have not been well elucidated. In this study, we therefore attempted to identify the cause of white coloration in torenia by comparing the white-flowered cultivar Crown White (CrW) with Crown Violet (CrV), a violet-flowered variety. RESULTS In an expression analysis, no flavanone 3-hydroxylase (TfF3H) transcript accumulation was detected in CrW petals. Sequence analyses revealed that a novel long terminal repeat (LTR)-type retrotransposable element, designated as TORE1 (Torenia retrotransposon 1), is inserted into the 5'-upstream region of the TfF3H gene in CrW. A transient expression assay using torenia F3H promoters with or without TORE1 insertion showed that the TORE1 insertion substantially suppressed F3H promoter activity, suggesting that this insertion is responsible for the absence of F3H transcripts in white petals. Furthermore, a transformation experiment demonstrated that the introduction of a foreign gentian F3H cDNA, GtF3H, into CrW was able to recover pink-flower pigmentation, indicating that F3H deficiency is indeed the cause of the colorless flower phenotype in CrW. Detailed sequence analysis also identified deletion mutations in flavonoid 3'-hydroxylase (TfF3'H) and flavonoid 3',5'- hydroxylase (TfF3'5'H) genes, but these were not directly responsible for white coloration in this cultivar. CONCLUSIONS Taken together, a novel retrotransposable element, TORE1, inserted into the F3H 5'-upstream region is the cause of deficient F3H transcripts in white-flowered torenia, thereby leading to reduced petal anthocyanin levels. This is the first report of a retrotransposable element involved in flower color mutation in the genus Torenia.
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Affiliation(s)
- Masahiro Nishihara
- Iwate Biotechnology Research Center, Narita 22-174-4, Kitakami, Iwate 024-0003, Japan
| | - Eri Yamada
- Iwate Biotechnology Research Center, Narita 22-174-4, Kitakami, Iwate 024-0003, Japan
| | - Misa Saito
- Iwate Biotechnology Research Center, Narita 22-174-4, Kitakami, Iwate 024-0003, Japan
| | - Kohei Fujita
- Iwate Biotechnology Research Center, Narita 22-174-4, Kitakami, Iwate 024-0003, Japan
| | - Hideyuki Takahashi
- Iwate Biotechnology Research Center, Narita 22-174-4, Kitakami, Iwate 024-0003, Japan
| | - Takashi Nakatsuka
- Department of Biological and Environmental Science, Graduate School of Agriculture, Shizuoka University, 836 Ohya Suruga-ku, Shizuoka 422-8529, Japan
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183
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Moyle LC, Jewell CP, Kostyun JL. Fertile approaches to dissecting mechanisms of premating and postmating prezygotic reproductive isolation. CURRENT OPINION IN PLANT BIOLOGY 2014; 18:16-23. [PMID: 24457825 DOI: 10.1016/j.pbi.2013.12.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2013] [Revised: 12/13/2013] [Accepted: 12/20/2013] [Indexed: 05/11/2023]
Abstract
In sexually reproducing organisms, speciation involves the evolution of mechanisms that confer reproductive isolation between diverging lineages. Here we discuss recent research on the molecular basis of traits that mediate these barriers during premating and postmating, prezygotic stages of reproduction. In some cases, the specific loci underlying the expression of reproductive barriers are known, most notably when premating isolation is due to flower color or scent differences, and when postmating isolation is due to divergent gamete signaling. In addition, emerging work in molecular biology and genomics is revealing the mechanistic basis of prezygotic reproductive traits within species, and therefore establishing clear candidates for future work examining their potential role in reproductive isolation between species.
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Affiliation(s)
- Leonie C Moyle
- Department of Biology, Indiana University, Bloomington, IN 47405, USA.
| | - Cathleen P Jewell
- Department of Biology, Indiana University, Bloomington, IN 47405, USA
| | - Jamie L Kostyun
- Department of Biology, Indiana University, Bloomington, IN 47405, USA
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184
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Identifying plant cell-surface receptors: combining ‘classical’ techniques with novel methods. Biochem Soc Trans 2014; 42:395-400. [DOI: 10.1042/bst20130251] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Cell–cell communication during development and reproduction in plants depends largely on a few phytohormones and many diverse classes of polymorphic secreted peptides. The peptide ligands are bound at the cell surface of target cells by their membranous interaction partners representing, in most cases, either receptor-like kinases or ion channels. Although knowledge of both the extracellular ligand and its corresponding receptor(s) is necessary to describe the downstream signalling pathway(s), to date only a few ligand–receptor pairs have been identified. Several methods, such as affinity purification and yeast two-hybrid screens, have been used very successfully to elucidate interactions between soluble proteins, but most of these methods cannot be applied to membranous proteins. Experimental obstacles such as low concentration and poor solubility of membrane receptors, as well as instable transient interactions, often hamper the use of these ‘classical’ approaches. However, over the last few years, a lot of progress has been made to overcome these problems by combining classical techniques with new methodologies. In the present article, we review the most promising recent methods in identifying cell-surface receptor interactions, with an emphasis on success stories outside the field of plant research.
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185
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In search of ligands and receptors of the pollen tube: the missing link in pollen tube perception. Biochem Soc Trans 2014; 42:388-94. [DOI: 10.1042/bst20130204] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The journey undertaken by the pollen tube in angiosperms to reach the deeply embedded female gametophyte for fertilization involves persistent guidance by the female gametophyte and accurate perception of the signals by the pollen tube. Several ovule-secreted peptides have been identified. Nevertheless, there are no exact findings on how these signals are perceived by the pollen tube. As a novel approach, we have improvised a modified SIV (semi-in vivo) technique, SIV-PS (SIV pollen tube secretome), to perform gel-free LC–MS/MS for high-throughput analysis of pollen-tube-secreted proteins. Our approach has led to the identification of over 1400 protein groups. Among them are pollen-tube-secreted ligands and receptor proteins representing potential male components in perceiving ovule-emitted cues for guidance. The present article reviews the missing link in pollen tube perception and showcases the improvised SIV-PS as a tool for high-throughput and targeted study of the pollen tube secretome.
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186
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Peptide ligands in plants. Enzymes 2014; 35:85-112. [PMID: 25740716 DOI: 10.1016/b978-0-12-801922-1.00004-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Plants have evolved small peptide ligands as intercellular signaling molecules. Previous studies have uncovered pairs of ligands and receptors in cell-cell communications. This review focuses on signaling and function of key plant peptide ligands.
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187
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Bleckmann A, Alter S, Dresselhaus T. The beginning of a seed: regulatory mechanisms of double fertilization. FRONTIERS IN PLANT SCIENCE 2014; 5:452. [PMID: 25309552 PMCID: PMC4160995 DOI: 10.3389/fpls.2014.00452] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2014] [Accepted: 08/21/2014] [Indexed: 05/20/2023]
Abstract
THE LAUNCH OF SEED DEVELOPMENT IN FLOWERING PLANTS (ANGIOSPERMS) IS INITIATED BY THE PROCESS OF DOUBLE FERTILIZATION: two male gametes (sperm cells) fuse with two female gametes (egg and central cell) to form the precursor cells of the two major seed components, the embryo and endosperm, respectively. The immobile sperm cells are delivered by the pollen tube toward the ovule harboring the female gametophyte by species-specific pollen tube guidance and attraction mechanisms. After pollen tube burst inside the female gametophyte, the two sperm cells fuse with the egg and central cell initiating seed development. The fertilized central cell forms the endosperm while the fertilized egg cell, the zygote, will form the actual embryo and suspensor. The latter structure connects the embryo with the sporophytic maternal tissues of the developing seed. The underlying mechanisms of double fertilization are tightly regulated to ensure delivery of functional sperm cells and the formation of both, a functional zygote and endosperm. In this review we will discuss the current state of knowledge about the processes of directed pollen tube growth and its communication with the synergid cells resulting in pollen tube burst, the interaction of the four gametes leading to cell fusion and finally discuss mechanisms how flowering plants prevent multiple sperm cell entry (polyspermy) to maximize their reproductive success.
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Affiliation(s)
- Andrea Bleckmann
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of RegensburgRegensburg, Germany
| | - Svenja Alter
- Plant Breeding, Center of Life and Food Sciences Weihenstephan, Technische Universität MünchenFreising, Germany
| | - Thomas Dresselhaus
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of RegensburgRegensburg, Germany
- *Correspondence: Thomas Dresselhaus, Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, Universitätsstrasse 18, 93053 Regensburg, Germany e-mail:
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188
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Selinski J, Scheibe R. Pollen tube growth: where does the energy come from? PLANT SIGNALING & BEHAVIOR 2014; 9:e977200. [PMID: 25482752 PMCID: PMC4622831 DOI: 10.4161/15592324.2014.977200] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Accepted: 08/28/2014] [Indexed: 05/18/2023]
Abstract
This review focuses on the energy metabolism during pollen maturation and tube growth and updates current knowledge. Pollen tube growth is essential for male reproductive success and extremely fast. Therefore, pollen development and tube growth are high energy-demanding processes. During the last years, various publications (including research papers and reviews) emphasize the importance of mitochondrial respiration and fermentation during male gametogenesis and pollen tube elongation. These pathways obviously contribute to satisfy the high energy demand, and there are many studies which suggest that respiration and fermentation are the only pathways to generate the needed energy. Here, we review data which show for the first time that in addition plastidial glycolysis and the balancing of the ATP/NAD(P)H ratio (by malate valves and NAD(+) biosynthesis) contribute to satisfy the energy demand during pollen development. Although the importance of energy generation by plastids was discounted during the last years (possibly due to the controversial opinion about their existence in pollen grains and pollen tubes), the available data underline their prime role during pollen maturation and tube growth.
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Key Words
- 2-OG, 2-oxoglutarate
- 2-PGA, 2-phosphoglycerate
- 3-PGA, 3-phosphoglycerate
- ACS, acetyl-CoA synthase
- ADH, alcohol dehydrogenase
- ALDH, aldehyde dehydrogenase
- AOX, alternative oxidase
- BPGA, bisphosphoglyceric acid
- ENO, enolase
- GAPDH, glyceraldehyde-3-phosphate dehydrogenase
- GOGAT, glutamate synthase
- GPT, G-6-P/phosphate translocators
- Gln, glutamine
- Glu, glutamate
- MDH, malate dehydrogenase
- NDP, nucleotide diphosphate kinase
- NMNAT, nicotinate/nicotinamide mononucleotide adenyltransferase
- NTT, ATP/ADP transporters
- OAA, oxaloacetate
- OPP, oxidative pentose-phosphate pathway
- PDC, pyruvate decarboxylase
- PDH, pyruvate dehydrogenase
- PEP, phosphoenolpyruvate
- PGAM, phosphoglycerate mutase
- PGDH, 3-phosphoglycerate dehydrogenase
- PK, pyruvate kinase
- PPSB, phosphorylated pathway of serine biosynthesis
- PPT, phosphoenolpyruvate/phosphate translocator
- PSP, phosphoserine phosphatase
- RNS, reactive nitrogen species
- ROS, reactive oxygen species
- RPOT, T3/T7 phage-type RNA polymerases
- T, malate/oxaloacetate translocator
- TP, triose phosphate.
- energy metabolism
- malate
- plastidial glycolysis
- pollen tube growth
- respiration
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Affiliation(s)
- Jennifer Selinski
- Department of Plant Physiology; University of Osnabrueck; Osnabrueck, Germany
| | - Renate Scheibe
- Department of Plant Physiology; University of Osnabrueck; Osnabrueck, Germany
- Correspondence to: Renate Scheibe;
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189
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Meade KG, Cormican P, Narciandi F, Lloyd A, O'Farrelly C. Bovine β-defensin gene family: opportunities to improve animal health? Physiol Genomics 2014; 46:17-28. [DOI: 10.1152/physiolgenomics.00085.2013] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Recent analysis of the bovine genome revealed an expanded suite of β-defensin genes that encode what are referred to as antimicrobial or host defense peptides (HDPs). Whereas primate genomes also encode α- and θ-defensins, the bovine genome contains only the β-defensin subfamily of HDPs. β-Defensins perform diverse functions that are critical to protection against pathogens but also in regulation of the immune response and reproduction. As the most comprehensively studied subclass of HDPs, β-defensins possess the widest taxonomic distribution, found in invertebrates as well as plants, indicating an ancient point of origin. Cross-species comparison of the genomic arrangement of β-defensin gene repertoire revealed them to vary in number among species presumably due to differences in pathogenic selective pressures but also genetic drift. β-Defensin genes exist in a single cluster in birds, but four gene clusters exist in dog, rat, mouse, and cow. In humans and chimpanzees, one of these clusters is split in two as a result of a primate-specific pericentric inversion producing five gene clusters. A cluster of β-defensin genes on bovine chromosome 13 has been recently characterized, and full genome sequencing has identified extensive gene copy number variation on chromosome 27. As a result, cattle have the most diverse repertoire of β-defensin genes so far identified, where four clusters contain at least 57 genes. This expansion of β-defensin HDPs may hold significant potential for combating infectious diseases and provides opportunities to harness their immunological and reproductive functions in commercial cattle populations.
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Affiliation(s)
- K. G. Meade
- Animal & Bioscience Research Department, Animal & Grassland Research and Innovation Centre, Teagasc, Grange, Co. Meath, Ireland
| | - P. Cormican
- Animal & Bioscience Research Department, Animal & Grassland Research and Innovation Centre, Teagasc, Grange, Co. Meath, Ireland
| | - F. Narciandi
- Comparative Immunology Group, School of Biochemistry and Immunology, Trinity College, Dublin, Ireland; and
| | - A. Lloyd
- Department of Science & Health, Carlow Institute of Technology, Co. Carlow, Ireland
| | - C. O'Farrelly
- Comparative Immunology Group, School of Biochemistry and Immunology, Trinity College, Dublin, Ireland; and
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190
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Aagaard JE, George RD, Fishman L, MacCoss MJ, Swanson WJ. Selection on plant male function genes identifies candidates for reproductive isolation of yellow monkeyflowers. PLoS Genet 2013; 9:e1003965. [PMID: 24339787 PMCID: PMC3854799 DOI: 10.1371/journal.pgen.1003965] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 10/04/2013] [Indexed: 11/18/2022] Open
Abstract
Understanding the genetic basis of reproductive isolation promises insight into speciation and the origins of biological diversity. While progress has been made in identifying genes underlying barriers to reproduction that function after fertilization (post-zygotic isolation), we know much less about earlier acting pre-zygotic barriers. Of particular interest are barriers involved in mating and fertilization that can evolve extremely rapidly under sexual selection, suggesting they may play a prominent role in the initial stages of reproductive isolation. A significant challenge to the field of speciation genetics is developing new approaches for identification of candidate genes underlying these barriers, particularly among non-traditional model systems. We employ powerful proteomic and genomic strategies to study the genetic basis of conspecific pollen precedence, an important component of pre-zygotic reproductive isolation among yellow monkeyflowers (Mimulus spp.) resulting from male pollen competition. We use isotopic labeling in combination with shotgun proteomics to identify more than 2,000 male function (pollen tube) proteins within maternal reproductive structures (styles) of M. guttatus flowers where pollen competition occurs. We then sequence array-captured pollen tube exomes from a large outcrossing population of M. guttatus, and identify those genes with evidence of selective sweeps or balancing selection consistent with their role in pollen competition. We also test for evidence of positive selection on these genes more broadly across yellow monkeyflowers, because a signal of adaptive divergence is a common feature of genes causing reproductive isolation. Together the molecular evolution studies identify 159 pollen tube proteins that are candidate genes for conspecific pollen precedence. Our work demonstrates how powerful proteomic and genomic tools can be readily adapted to non-traditional model systems, allowing for genome-wide screens towards the goal of identifying the molecular basis of genetically complex traits.
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Affiliation(s)
- Jan E. Aagaard
- Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America
| | - Renee D. George
- Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America
| | - Lila Fishman
- Division of Biological Sciences, University of Montana, Missoula, Montana, United States of America
| | - Michael J. MacCoss
- Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America
| | - Willie J. Swanson
- Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America
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191
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Zhou P, Silverstein KAT, Gao L, Walton JD, Nallu S, Guhlin J, Young ND. Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application). BMC Bioinformatics 2013; 14:335. [PMID: 24256031 PMCID: PMC3924332 DOI: 10.1186/1471-2105-14-335] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Accepted: 11/15/2013] [Indexed: 01/08/2023] Open
Abstract
BACKGROUND Small peptides encoded as one- or two-exon genes in plants have recently been shown to affect multiple aspects of plant development, reproduction and defense responses. However, popular similarity search tools and gene prediction techniques generally fail to identify most members belonging to this class of genes. This is largely due to the high sequence divergence among family members and the limited availability of experimentally verified small peptides to use as training sets for homology search and ab initio prediction. Consequently, there is an urgent need for both experimental and computational studies in order to further advance the accurate prediction of small peptides. RESULTS We present here a homology-based gene prediction program to accurately predict small peptides at the genome level. Given a high-quality profile alignment, SPADA identifies and annotates nearly all family members in tested genomes with better performance than all general-purpose gene prediction programs surveyed. We find numerous mis-annotations in the current Arabidopsis thaliana and Medicago truncatula genome databases using SPADA, most of which have RNA-Seq expression support. We also show that SPADA works well on other classes of small secreted peptides in plants (e.g., self-incompatibility protein homologues) as well as non-secreted peptides outside the plant kingdom (e.g., the alpha-amanitin toxin gene family in the mushroom, Amanita bisporigera). CONCLUSIONS SPADA is a free software tool that accurately identifies and predicts the gene structure for short peptides with one or two exons. SPADA is able to incorporate information from profile alignments into the model prediction process and makes use of it to score different candidate models. SPADA achieves high sensitivity and specificity in predicting small plant peptides such as the cysteine-rich peptide families. A systematic application of SPADA to other classes of small peptides by research communities will greatly improve the genome annotation of different protein families in public genome databases.
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Affiliation(s)
- Peng Zhou
- Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108, USA
| | - Kevin AT Silverstein
- Supercomputing Institute for Advanced Computational Research, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Liangliang Gao
- Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108, USA
| | - Jonathan D Walton
- Department of Plant Biology and U.S. Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824, USA
| | - Sumitha Nallu
- Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA
| | - Joseph Guhlin
- Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108, USA
| | - Nevin D Young
- Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108, USA
- Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108, USA
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192
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Santos CS, Silva AI, Serrão I, Carvalho AL, Vasconcelos MW. Transcriptomic analysis of iron deficiency related genes in the legumes. Food Res Int 2013. [DOI: 10.1016/j.foodres.2013.06.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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193
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Uebler S, Dresselhaus T, Márton M. Species-specific interaction of EA1 with the maize pollen tube apex. PLANT SIGNALING & BEHAVIOR 2013; 8:doi: 10.4161/psb.25682. [PMID: 23887497 PMCID: PMC4091058 DOI: 10.4161/psb.25682] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The egg apparatus-secreted polymorphic EA 1 peptide is required for micropylar pollen tube (PT) guidance in maize, the last step of the PT journey during the double fertilization process in flowering plants. In a recent study we have shown that maize PTs are attracted in vitro by EA 1 and that their growth is arrested at high peptide concentrations. Moreover, we have also shown that maize PTs are guided in vitro in a species-preferential manner to the micropylar opening of transgenic Arabidopsis ovules secreting the EA 1-GFP fusion protein. In support of these findings, we have improved the ligand-receptor labeling assay and report here that the EA 1 peptide interacts in vitro with the maize PT apex in a species-specific manner. Bound peptide gets internalized in large vesicles and is degraded. This finding indicates that the pollen tube remains sensitive to the attractant by its rapid internalization.
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194
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Beale KM, Johnson MA. Speed dating, rejection, and finding the perfect mate: advice from flowering plants. CURRENT OPINION IN PLANT BIOLOGY 2013; 16:590-7. [PMID: 24021868 DOI: 10.1016/j.pbi.2013.08.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2013] [Revised: 08/17/2013] [Accepted: 08/20/2013] [Indexed: 05/08/2023]
Abstract
Angiosperm pollen tubes extend through pistil tissue to deliver a pair of immotile sperm cells to female gametes for double fertilization. The extended journey of the pollen tube requires extensive cell:cell interactions that guide the pollen tube to its destination and instruct it to stop growing and burst. Once sperm cells are released the molecular exchanges between male and female continue, resulting in sperm activation and gamete fusion. Finally, there is evidence that gamete fusion can feed back on the pollen tube attraction mechanism so that additional pollen tubes can be attracted only if the first sperm cells fail to fertilize. We review progress toward defining the molecules mediating each of these exchanges and describe how small cysteine-rich peptides are a major mode of cellular communication.
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Affiliation(s)
- Kristin M Beale
- Brown University Department of Molecular Biology, Cell Biology, and Biochemistry, United States
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195
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Martín MV, Distefano AM, Zabaleta EJ, Pagnussat GC. New insights into the functional roles of reactive oxygen species during embryo sac development and fertilization in Arabidopsis thaliana. PLANT SIGNALING & BEHAVIOR 2013; 8:doi: 10.4161/psb.25714. [PMID: 23887494 PMCID: PMC4091057 DOI: 10.4161/psb.25714] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Previously considered as toxic by-products of aerobic metabolism, reactive oxygen species (ROS) are emerging as essential signaling molecules in eukaryotes. Recent evidence showed that maintenance of ROS homeostasis during female gametophyte development is crucial for embryo sac patterning and fertilization. Although ROS are exclusively detected in the central cell of mature embryo sacs, the study of mutants deficient in ROS homeostasis suggests that controlled oxidative bursts might take place earlier during gametophyte development. Also, a ROS burst that depends on pollination takes place inside the embryo sac. This oxidative response might be required for pollen tube growth arrest and for sperm cell release. In this mini-review, we will focus on new insights into the role of ROS during female gametophyte development and fertilization. Special focus will be made on the mitochondrial Mn-Superoxide dismutase (MSD1), which has been recently reported to be essential for maintaining ROS homeostasis during embryo sac formation.
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196
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Leljak-Levanić D, Juranić M, Sprunck S. De novo zygotic transcription in wheat (Triticum aestivum L.) includes genes encoding small putative secreted peptides and a protein involved in proteasomal degradation. PLANT REPRODUCTION 2013; 26:267-85. [PMID: 23912470 DOI: 10.1007/s00497-013-0229-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2013] [Accepted: 07/10/2013] [Indexed: 05/12/2023]
Abstract
Wheat is one of the world's most important crops, and increasing grain yield is a major challenge for the future. Still, our knowledge about the molecular machineries responsible for early post-fertilization events such as zygotic reprogramming, the initial cell-specification events during embryogenesis, and the intercellular communication between the early embryo and the developing endosperm is very limited. Here, we describe the identification of de novo transcribed genes in the wheat zygote. We used wheat ovaries of defined post-fertilization stages to isolate zygotes and early embryos, and identified genes that are specifically induced in these particular stages. Importantly, we observed that some of the zygotic-induced genes encode proteins with similarity to secreted signaling peptides such as TAPETUM DETERMINANT 1 and EGG APPARATUS 1, and to MATH-BTB proteins which are known substrate-binding adaptors for the Cullin3-based ubiquitin E3 ligase. This suggests that both cell-cell signaling and targeted proteasomal degradation may be important molecular events during zygote formation and the progression of early embryogenesis.
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Affiliation(s)
- Dunja Leljak-Levanić
- Department of Molecular Biology, Faculty of Science and Mathematics, University of Zagreb, Horvatovac 102a, 10000, Zagreb, Croatia
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197
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Dresselhaus T, Franklin-Tong N. Male-female crosstalk during pollen germination, tube growth and guidance, and double fertilization. MOLECULAR PLANT 2013; 6:1018-36. [PMID: 23571489 DOI: 10.1093/mp/sst061] [Citation(s) in RCA: 197] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Sperm cells of flowering plants are non-motile and thus require transportation to the egg apparatus via the pollen tube to execute double fertilization. During its journey, the pollen tube interacts with various sporophytic cell types that support its growth and guide it towards the surface of the ovule. The final steps of tube guidance and sperm delivery are controlled by the cells of the female gametophyte. During fertilization, cell-cell communication events take place to achieve and maximize reproductive success. Additional layers of crosstalk exist, including self-recognition and specialized processes to prevent self-fertilization and consequent inbreeding. In this review, we focus on intercellular communication between the pollen grain/pollen tube including the sperm cells with the various sporophytic maternal tissues and the cells of the female gametophyte. Polymorphic-secreted peptides and small proteins, especially those belonging to various subclasses of small cysteine-rich proteins (CRPs), reactive oxygen species (ROS)/NO signaling, and the second messenger Ca(2+), play center stage in most of these processes.
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Affiliation(s)
- Thomas Dresselhaus
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, Universitätsstraβe 31, D-93053 Regensburg, Germany.
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198
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Okuda S, Suzuki T, Kanaoka MM, Mori H, Sasaki N, Higashiyama T. Acquisition of LURE-binding activity at the pollen tube tip of Torenia fournieri. MOLECULAR PLANT 2013; 6:1074-90. [PMID: 23482369 DOI: 10.1093/mp/sst050] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Pollen tube guidance is controlled by multiple complex interactions with the female tissues. Here, we show that pollen tubes of Torenia fournieri are regulated by a stylar tissue in a length-dependent manner to receive and respond to attractant LURE peptides secreted from synergid cells. We developed an immunostaining method to visualize LURE peptides bound at the plasma membrane of the tip region of the pollen tube. Using this method, we found that LURE peptides bound specifically to pollen tubes growing through a cut style. The peptides also bound to pollen tubes growing through a shorter style, which were not competent to respond to these peptides. These observations suggested a possibility that acquisition of the LURE peptide reception ability and acquisition of full competency are separable processes. RNA-Seq suggested that the transcription profile of pollen tubes was affected by both the length of the style and the cultivation period, consistently with physiological changes in binding activity and LURE response ability. The database generated from de novo RNA-Seq of Torenia pollen tubes was shown to be useful to identify pollen tube proteins by mass spectrometry. Our studies provide insight and an effective platform for protein identification to understand pollen tube guidance.
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Affiliation(s)
- Satohiro Okuda
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
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199
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Nishihara M, Shimoda T, Nakatsuka T, Arimura GI. Frontiers of torenia research: innovative ornamental traits and study of ecological interaction networks through genetic engineering. PLANT METHODS 2013; 9:23. [PMID: 23803155 PMCID: PMC3701481 DOI: 10.1186/1746-4811-9-23] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2013] [Accepted: 06/21/2013] [Indexed: 05/04/2023]
Abstract
Advances in research in the past few years on the ornamental plant torenia (Torenia spps.) have made it notable as a model plant on the frontier of genetic engineering aimed at studying ornamental characteristics and pest control in horticultural ecosystems. The remarkable advantage of torenia over other ornamental plant species is the availability of an easy and high-efficiency transformation system for it. Unfortunately, most of the current torenia research is still not very widespread, because this species has not become prominent as an alternative to other successful model plants such as Arabidopsis, snapdragon and petunia. However, nowadays, a more global view using not only a few selected models but also several additional species are required for creating innovative ornamental traits and studying horticultural ecosystems. We therefore introduce and discuss recent research on torenia, the family Scrophulariaceae, for secondary metabolite bioengineering, in which global insights into horticulture, agriculture and ecology have been advanced. Floral traits, in torenia particularly floral color, have been extensively studied by manipulating the flavonoid biosynthetic pathways in flower organs. Plant aroma, including volatile terpenoids, has also been genetically modulated in order to understand the complicated nature of multi-trophic interactions that affect the behavior of predators and pollinators in the ecosystem. Torenia would accordingly be of great use for investigating both the variation in ornamental plants and the infochemical-mediated interactions with arthropods.
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Affiliation(s)
| | - Takeshi Shimoda
- National Agricultural Research Center, Tsukuba, Ibaraki 305-8666, Japan
| | - Takashi Nakatsuka
- Department of Biological and Environmental Science, Graduate School of Agriculture, Shizuoka University, Shizuoka 422-8529, Japan
| | - Gen-ichiro Arimura
- Department of Biological Science & Technology, Faculty of Industrial Science & Technology, Tokyo University of Science, 6-3-1 Niijuku, Katsushika-ku, Tokyo 125-8585, Japan
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200
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Leydon AR, Beale KM, Woroniecka K, Castner E, Chen J, Horgan C, Palanivelu R, Johnson MA. Three MYB transcription factors control pollen tube differentiation required for sperm release. Curr Biol 2013; 23:1209-14. [PMID: 23791732 DOI: 10.1016/j.cub.2013.05.021] [Citation(s) in RCA: 81] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2013] [Revised: 05/10/2013] [Accepted: 05/10/2013] [Indexed: 12/26/2022]
Abstract
In flowering plants, immotile sperm cells develop within the pollen grain and are delivered to female gametes by a pollen tube. Upon arrival at the female gametophyte, the pollen tube stops growing and releases sperm cells for successful fertilization. Several female signaling components essential for pollen tube reception have been identified; however, male components remain unknown. We show that the expression of three closely related MYB transcription factors is induced in pollen tubes by growth in the pistil. Pollen tubes lacking these three transcriptional regulators fail to stop growing in synergids, specialized cells flanking the egg cell that attract pollen tubes and degenerate upon pollen tube arrival. myb triple-mutant pollen tubes also fail to release their sperm cargo. We define a suite of pollen tube-expressed genes regulated by these critical MYBs and identify transporters, carbohydrate-active enzymes, and small peptides as candidate molecular mediators of pollen tube-female interactions necessary for flowering plant reproduction. Our data indicate that de novo transcription in the pollen tube nucleus during growth in the pistil leads to pollen tube differentiation required for release of sperm cells.
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Affiliation(s)
- Alexander R Leydon
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912, USA
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