Fluorous and Organic Extraction Systems: A Comparison from the Perspectives of Coordination Structures, Interfaces, and Bulk Extraction Phases

Microscopic structures in liquid-liquid extraction, such as structuration between extractants or extracted complexes in bulk organic phases and at interfaces, can influence macroscopic phenomena, such as the distribution behavior of solutes, including extraction efficiency and selectivity. In this study, we correlated the macroscopic behavior of the Zr(IV) extraction from nitric acid solutions with microscopic structural information to understand at the molecular level the key factors contributing to the higher metal ion extraction performance in the fluorous extraction system as compared to the analogous organic extraction system. The fluorous and organic extraction systems consist of tris(4,4,5,5,6,6,7,7,7-nonafluoroheptyl) phosphate (TFP) in perfluorohexane and tri-n-heptyl phosphate (THP) in n-hexane, respectively. Extended X-ray absorption fine structure, neutron reflectometry (NR), and small-angle neutron scattering revealed the structural information around the central metal ion of the complex, at the interface, and in the bulk extraction phase, respectively. NR results showed that extractant molecules did not accumulate much at the interface in both extraction system. In the fluorous extraction system, extractant aggregates with a 1.46 nm radius of gyration (Rg) were formed after contact with nitric acid, and remained even after Zr(IV) extraction through the form of a 1:3 (Zr(IV):TFP) complex. In contrast, in the organic extraction system, only extractant dimers with Rg of 0.70 nm were formed and Zr(IV) is extracted through the form of a 1:2 (Zr(IV):THP) complex. We speculate that differences in the local coordination structure around the Zr(IV) ion and the structuration of the extractant molecules in the bulk extraction phase contribute to the high Zr(IV) extraction performance in the fluorous extraction system. In particular, the size of the aggregates hardly changed with increasing Zr(IV) concentration in the fluorous phase, which may be closely related to the absence of phase splitting in the fluorous extraction system.

The Emerging Role of Brain Mitochondria in Fear and Anxiety

The functional complexity of brain circuits underlies the broad spectrum of behaviors, cognitive functions, and their associated disorders. Mitochondria, traditionally known for their role in cellular energy metabolism, are increasingly recognized as central to brain function and behavior. This review examines how mitochondria are pivotal in linking cellular energy processes with the functioning of neural circuits that govern fear and anxiety. Following an introductory section in which we summarize current knowledge about fear and anxiety neural circuits, we provide a brief summary of mitochondria fundamental roles (e.g., from energy production and calcium buffering to their involvement in reactive oxygen species (ROS) generation, mitochondrial dynamics, and signaling), particularly emphasizing their contribution to synaptic plasticity, neurodevelopment, and stress response mechanisms. The review's core focuses on the current state of knowledge regarding how mitochondrial function and dysfunction impact the neural substrates of fear and anxiety. Furthermore, we explore the implications of mitochondrial alterations in the context of posttraumatic stress disorder (PTSD) and anxiety disorders, underscoring the potential of mitochondrial pathways as new therapeutic targets. Integrating insights from genetic, biochemical, neurobiological, behavioral, and clinical studies, we propose a model in which mitochondrial function is critical for regulating the neural circuits that underpin fear and anxiety behaviors, highlighting how mitochondrial dysfunction can lead to their pathological manifestations. This integration emphasizes the potential for developing novel treatments targeting the biological roots of fear, anxiety, and related disorders. By merging mitochondrial biology with behavioral and circuit neuroscience, we enrich our neurobiological understanding of fear and anxiety, uncovering promising avenues for therapeutic intervention.

Ultrafast Time-Domain Spectroscopy Reveals Coherent Vibronic Couplings upon Electronic Excitation in Crystalline Organic Thin Films

The coherent coupling between electronic excitations and vibrational modes of molecules largely affects the optical and charge transport properties of organic semiconductors and molecular solids. To analyze these couplings by means of ultrafast spectroscopy, highly ordered crystalline films with large domains are particularly suitable because the domains can be addressed individually, hence allowing azimuthal polarization-resolved measurements. Impressive examples of this are highly ordered crystalline thin films of perfluoropentacene (PFP) molecules, which adopt different molecular orientations on different alkali halide substrates. Here, we report polarization-resolved time-domain vibrational spectroscopy with 10 fs time resolution and Raman spectroscopy of crystalline PFP thin films grown on NaF(100) and KCl(100) substrates. Coherent oscillations in the time-resolved spectra reveal vibronic coupling to a high-frequency, 25 fs, in-plane deformation mode that is insensitive to the optical polarization, while the coupling to a lower-frequency, 85 fs, out-of-plane ring bending mode depends significantly on the crystalline and molecular orientation. Comparison with calculated Raman spectra of isolated PFP molecules in vacuo supports this interpretation and indicates a dominant role of solid-state effects in the vibronic properties of these materials. Our results represent a first step toward uncovering the role of anisotropic vibronic couplings for singlet fission processes in crystalline molecular thin films.

N-Heterocyclic carbene-stabilized gold-copper nanoclusters: synthesis, bonding and mechanochromism

N-Heterocyclic carbene (NHC) ligands have emerged as highly effective surface ligands for the protection and functionalization of metal nanoclusters (NCs). However, research on NHC-stabilized metal NCs, including their synthesis, structure, properties, and applications, is still in its early stages. In this study, we present the first gold-copper alloy cluster protected by both NHC and alkyne ligands, denoted as Au3Cu(iPrNHCiPr)(PA)4 (abbreviated as Au3Cu, where iPrNHCiPr is a bidentate N-heterocyclic carbene ligand with isopropyl as the N-substituent, and PA is a phenylethynyl group). The precise composition of Au3Cu was confirmed through the utilization of electrospray ionization mass spectrometry (ESI-MS), and its structure was determined via X-ray single-crystal diffraction. It is worth noting that although the Au3Cu clusters do not display substantial light emission when exposed to UV lamps, they are capable of emitting green fluorescence subsequent to undergoing mechanical milling (λem = 500 nm). Powder X-ray diffraction (PXRD) analysis reveals that this transition is attributed to a crystalline-amorphous transformation of the cluster crystals. These atomically precise alloy clusters are expected to serve as a model for further investigation into the principles of mechanical milling of metal clusters for discolouration.

Time-resolved heterodyne-detected electronic sum frequency generation (TR-HD-ESFG) spectroscopy: A new approach to explore interfacial dynamics

Aqueous interfaces containing organic/inorganic molecules are important in various biological, industrial, and atmospheric processes. So far, the study on the dynamics of interfacial molecules has been carried out with time-resolved vibrational sum-frequency generation (TR-VSFG) and time-resolved electronic sum-frequency generation (TR-ESFG) techniques. Although the ESFG probe is powerful for investigating interfacial photochemical dynamics of solute molecules by monitoring the electronic transition of transients or photoproducts at the interface, heterodyne detection is highly desirable for obtaining straightforward information, particularly in time-resolved measurements. So far, heterodyne detection has been realized only for TR-VSFG measurements but not for TR-ESFG measurements. In this paper, we report on femtosecond time-resolved heterodyne-detected ESFG (TR-HD-ESFG) spectroscopy for the first time. With TR-HD-ESFG developed, we measured the time-resolved electronic ΔImχ(2) spectra (pump-induced changes in the imaginary part of the second-order susceptibility) of a prototype dye, malachite green (MG), at the air/water interface. The obtained ΔImχ(2) spectra clearly show not only the ground-state bleach but also the excited-state band of MG at the air/water interface, demonstrating the high potential of TR-HD-ESFG as a new powerful tool to investigate ultrafast reaction dynamics at the interface.

Topological control in paddlewheel metal-organic cages via ligand length variation

Varying the length of phenanthrene-derived ligands switches the selective assembly of MIInLn metal-organic cages (MOCs, n = 6 or 8) between tetrahedral, square, or triangular architectures. The limit of this approach is explored for both Cu2 and Rh2 paddlewheel MOCs, and supported by solution, solid-state and computational analysis.

Surface accumulation and acid-base equilibrium of phenol at the liquid-vapor interface

We have investigated the surfactant properties of phenol in aqueous solution as a function of pH and bulk concentration using liquid-jet photoelectron spectroscopy (LJ-PES) and surface tension measurements. The emphasis of this work is on the determination of the Gibbs free energy of adsorption and surface excess of phenol and its conjugate base phenolate at the bulk pKa (9.99), which can be determined for each species using photoelectron spectroscopy. These values are compared to those obtained in measurements well below and well above the pKa, where pure phenol or phenolate, respectively, are the dominant species, and where the Gibbs free energy of adsorption determined from surface tension and LJ-PES data are in excellent agreement. At the bulk pKa the surface-sensitive LJ-PES measurements show a deviation of the expected phenol/phenolate ratio in favor of phenol, i.e., an apparent upward shift of the at the surface. In addition, the Gibbs free energies of adsorption determined by LJ-PES at the bulk pKa for phenol and phenolate deviate from those observed for the pure solutions. We discuss these observations in view of the different surface propensity of phenol and phenolate as well as potential cooperative interactions between them in the near-surface region.

Mono- and Bichromophores Formed from Perylene Monoimide Diesters: Competition between Intramolecular Charge Transfer and Intermolecular Singlet Exciton Fission

Perylene monoimide diesters and the corresponding phenyl-linked bichromophores are strongly fluorescent in dilute solution with minimal triplet population after relaxation of the initial Franck-Condon state. The monomer forms nonemissive face-to-face dimers in solution, wherein illumination leads to formation of a spin-correlated, triplet pair with a yield of ca. 13% and with a time constant of 4 ± 1 ps. The triplet pair, which is localized on the aggregate, cannot separate and decays with a mean lifetime of 80 ± 10 ps. The relaxed S1 state of the weakly coupled, phenyl-linked bichromophores establishes an equilibrium with an intramolecular charge-transfer state over a hundred picoseconds or so, depending on the solvent and the geometry of the linkage. This equilibrium mixture, being dominated by the relaxed S1 state, decays on the nanosecond time scale in solution at room temperature without implication of a triplet state. Self-association occurs at higher concentration and, for the para-bridged bichromophore, leads to inefficient triplet formation in tetrahydrofuran at room temperature.

Theoretical screening of the metal-nonmetal pair anchored on N-doped graphene for the oxygen reduction reaction

The oxygen reduction reaction (ORR) is a crucial process during hydrogen-based energy conversion at the cathode of proton-exchange membrane fuel cells, which causes a bottleneck owing to the high price and low efficiency of ORR catalysts. Single-atom catalysts (SACs) have garnered significant attention from researchers due to their exceptional activity and efficient atom utilization. To identify highly active SACs among numerous candidates, a three-step screening strategy was adopted to select the best ORR catalyst. Through this screening approach, the SIr@N8 SAC composed of S and Ir pair anchored N-doped graphene was identified to exhibit an excellent catalytic performance with an overpotential of 0.29 V. Its remarkable activity and stability make it a promising ORR catalyst. And the electronic structure analysis suggested that the electronic structure of active metal sites could be regulated by nonmetal coordinates to enhance the catalytic performance. This theoretical study is expected to provide an effective scanning strategy for identifying ORR catalysts with an outstanding catalytic performance.

Convergent synthesis of bicyclic boronates via a cascade regioselective Suzuki-Miyaura/cyclisation protocol

Bicyclic boronates have recently emerged as promising candidates to invoke targeted biomolecular interactions, given their selectivity for specific functionalities. Despite this, the general stability of the C-B bond in vivo, for such heterocycles, remains an intractable challenge that can often preclude their utility in drug discovery. To address this challenge, de novo strategies that allow expedient access to strategically substituted boronates, that enable modulation of the C-B bond are urgently required. Herein we disclose an operationally simple, regioselective cross-coupling/cyclisation reaction of easily accessible vicinal boronic esters with 2-halophenols to rapidly forge 3-substituted bicyclic boronates. The utility of the platform was demonstrated via expedient access to Xeruborbactam derivatives, chemoselective manipulation of formed products and the convergent approach to bicyclic boronates with a pendent biomolecular probe.

Modulating the photodynamic modality of Au22 nanoclusters through surface conjugation of arginine for promoted healing of bacteria-infected wounds

Developing novel antibacterial agents without drug resistance is highly desired but challenging. In this study, an Au nanocluster (NC)-based photodynamic antibacterial agent with aggregation-induced emission (AIE) has been designed to promote the healing of bacteria-infected wounds by conjugating arginine (Arg) on the surface of Au22 NCs. The conjugation of Arg not only endows the NCs with enhanced visible light absorption, increased photoluminescence (PL) intensity, and prolonged PL lifetime, but it also enables switching the photodynamic production mode of reactive oxygen species (ROS) and extra production of reactive nitrogen species (RNS). These enhancements allow the Arg-Au22 NCs to combine ROS/RNS-mediated antibacterial action with the enhanced inherent antibacterial properties of Au NCs, resulting in outstanding antibacterial efficacy against both Gram-negative and Gram-positive bacteria. In vivo experiments demonstrate the effective treatment of bacteria-infected wounds by the Arg-Au22 NCs, leading to the photodynamic eradication of bacterial infections and reduced inflammation in the wound area without causing systemic harm or impairing blood and liver functions. This study introduces a novel approach to designing metal NC-based photodynamic antibacterials with multiple antibacterial actions, contributing to deeper understanding of ROS/RNS-mediated antibacterial mechanisms, and future utilization of metal NCs in antibacterial therapies.

Resistance of a PdAu12(8e) Core to Growth in Collision-Induced Sequential Reductive Elimination of (C≡CR)2 from [PdAu24(C≡CR)18]2

Previous studies have reported that [PdAu24(PAF)18]2- (PAF = 3,5-(CF3)2C6H3C≡C) with an icosahedral superatomic PdAu12(8e) core underwent collision-induced sequential reductive elimination (CISRE) of 1,3-diyne (PAF)2 ( J. Phys. Chem. C 2020, 124, 19119). The most likely scenario after the CISRE of (PAF)2 is the growth of the PdAu12(8e) core via the fusion of the Au(0) atoms produced from the Au2(PAF)3 units on the core surface. Contrary to expectation, anion photoelectron spectroscopy and theoretical calculations regarding the CISRE products [PdAu24(PAF)18-2n]2- (n = 1-6) revealed that the electronically closed PdAu12(8e) core does not grow to a single superatom with (8 + 2n)e but assembles with Au2(2e) units. Characterization of the CISRE products of other alkynyl-protected Au clusters suggested that even the non-superatomic Au17(8e) core was resistant to growth due probably to rigidification by PA ligands. We propose that there is a kinetic bottleneck in the growth process of protected Au clusters at the stage where they are electronically closed and/or lose their structural fluxionality by ligation.

Dual structural fluxionality in the copper borozene complex Cu3B8-: A two-layered molecular rotor

Doubly aromatic B82-, a borozene analog of benzene (C6H6) due to their similar π bonding, can be considered an ideal base for multi-layered molecular rotors. Here, we theoretically constructed the copper borozene complex Cu3B8- to investigate its stability and structural fluxionality. The lowest energy isomers consist of two-layered configurations: a B8 molecular wheel and a triangular Cu3 motif that either stands upright or lies flat above the B8 wheel. Both configurations exhibit structural fluxionality, as indicated by the free rotation of Cu3 with respect to the B8 molecular wheel, confirmed by Born-Oppenheimer molecular dynamics simulations even at low temperatures. This fluxional behavior is associated with an ultra-soft vibrational mode of Cu3 (less than 10.0 cm-1) and a negligible rotational barrier of 0.01 kcal/mol. Notably, high simulated temperatures cause irregular interconversion between the standing and lying orientations of Cu3 without regularity. Chemical bonding analysis confirmed that charge transfer from Cu3 to the B8 wheel renders Cu3B8- a typical copper borozene complex, [Cu3+][B82-], where B82- has six delocalized π and σ electrons. This electron delocalization contributes to a dilute and continuous electron cloud that underpins the dynamic behavior of the Cu3 trimer.

Accelerated Zymonic Acid Formation from Pyruvic Acid at the Interface of Aqueous Nanodroplets

To explore the role of the liquid interface in mediating reactivity in small compartments, the formation kinetics of zymonic acid (ZA) is measured in submicron aerosols (average radius = 240 nm) using mass spectrometry. The formation of ZA, from a condensation reaction of two pyruvic acid (PA) molecules, proceeds over days in bulk solutions, while in submicron aerosols, it occurs in minutes. The experimental results are replicated in a kinetic model using an apparent interfacial reaction rate coefficient of krxn = (0.9 ± 0.2) × 10-3 M-1 s-1. The simulation reveals that surface activity of PA coupled with an enhanced interfacial reaction rate drives accelerated ZA formation in aerosols. Experimental and simulated results provide compelling evidence that the condensation reaction of PA occurs exclusively at the aerosol interface with a reaction rate coefficient that is enhanced by 4 orders of magnitude (∼104) relative to what is estimated for macroscale solutions.

Probing photochemical dynamics using electronic vs vibrational sum-frequency spectroscopy: The case of the hydrated electron at the water/air interface

Photo-dynamics can proceed differently at the water/air interface compared to in the respective bulk phases. Second-order non-linear spectroscopy is capable of selectively probing the dynamics of species in such an environment. However, certain conclusions drawn from vibrational and electronic sum-frequency generation spectroscopies do not agree as is the case for the formation and structure of hydrated electrons at the interface. This Perspective aims to highlight these apparent discrepancies, how they can be reconciled, suggests how the two techniques complement one another, and outline the value of performing both techniques on the same system.

Infrared Spectroscopy of CH5+ Cations in Helium Nanodroplets

The methanium CH5+ is a prototypical fluxional ion whose infrared spectra remain unassigned. Here we report on the infrared spectra of CH5+ cations and its deuterated isotopomer, CH4D+, in helium droplets at a low temperature of 0.38 K. The ions were produced upon protonation of CH4 molecules, a technique that was developed in this work. The spectra of CH5+ around 3000 cm-1 show two strong and broad infrared bands and a weak shoulder, reflecting its highly fluxional nature. The spectrum of CH4D+ shows a much sharper infrared band, indicating a partial quenching of the exchange of H/D atoms. This work also reports on the infrared spectrum of the methane dimer radical cations (CH4)2+.

Investigation of the temperature effect on the formation of a two-dimensional self-assembled network at the liquid/solid interface

In this work, we investigate the temperature effect on the formation of self-assembled molecular networks (SAMNs) at the liquid/solid interface, focusing on an alkylated achiral glycine derivative at the 1-phenyloctane/HOPG interface. Using STM with an in situ heating stage, we comprehensively examine the concentration-temperature phase space for 2D network formation. This study allows us to determine the enthalpic and entropic contributions to the Gibbs free energy (ΔG) of monolayer formation, revealing that the process is enthalpically driven. Moreover, we further develop our previously established Ising code by incorporating temperature dependence, which provides valuable insights into the interplay of enthalpic and entropic factors. Our findings, supported by both experimental and theoretical analyses, demonstrate a strong agreement in thermodynamic parameters, validating our model as a proof of concept for studying temperature effects in SAMN formation. This research underscores the importance of understanding enthalpic and entropic contributions for the successful utilization of 2D molecular self-assembly.

Regulation of Sensitized Phosphorescence in Two-Dimensional Lead Bromine Perovskites by Tuning Excited-State Interactions

Excited-state interactions within the organic layer play a critical role in sensitized phosphorescence of two-dimensional (2D) perovskites. Herein, we regulate excited-state interactions utilizing isomeric organic ligands 1-naphthylmethylamine (1-NMA) and 1-(2-naphthyl)-methanamine (2-NMA). Transient absorption and first-principles calculations are employed to elucidate the mechanisms of triplet energy transfer (TET) and triplet excimer formation. The results indicate that wave function hybridization and tunneling effect at the inorganic/organic interface contribute to rapid (∼20 ps) and highly efficient (>98%) TET, with the triplet excimer being generated in (1-NMA)2PbBr4 at picosecond time-scale. However, triplet excimer is barely observed in (2-NMA)2PbBr4 due to varying ligand stacking modes. Despite rapid TET, the efficiency of sensitized phosphorescence is low (<0.5%), which is ascribed to pronounced nonradiative decay. By mixing isomeric ligands and optimizing respective ratio, a maximum phosphorescence enhancement of 7.6 folds is achieved. This work provides a detailed mechanistic understanding of triplet excimer sensitization and regulation of sensitized phosphorescence.

Temperature-dependent vibrational energy relaxation of hydrogen-bonded and free OD groups at the air-water interface

Water interfaces play a crucial role in regulating interactions and energy flow. Vibrational sum-frequency generation (vSFG) spectroscopy provides structural and dynamic information on water molecules at interfaces. It has revealed, for instance, the presence of the hydrogen-bonded and free OH groups at the air-water interface. Here, using temperature-dependent, time-resolved vSFG, we focus on the vibrational energy relaxation dynamics of interfacial heavy water (D2O). We reveal that while the relaxation timescale for hydrogen-bonded OD stretch modes is temperature-independent, the lifetime of the free OD stretch mode decreases with increasing temperature. Our data, supported by simulations, suggest that both intramolecular energy transfer and rotational reorientation mechanisms jointly contribute to the energy relaxation process of the free OD, with temperature influencing these mechanisms differently.

Multiphase coacervates: mimicking complex cellular structures through liquid-liquid phase separation

Coacervate microdroplets, arising from liquid-liquid phase separation, have emerged as promising models for primary cells, demonstrating the ability to regulate biomolecular enrichment, create chemical gradients, accelerate confined reactions, and even express proteins. Notably, multiphase coacervation provides a robust framework to replicate hierarchically complex cellular structures, offering valuable insights into cellular organization and function. In this review, we explore the recent advancements in the study of multiphase coacervates, focusing on design strategies, underlying mechanisms, structural control, and their applications in biomimetics. These developments highlight the potential of multiphase coacervates as powerful tools in the field of synthetic biology and material science.

Evaluating the Accuracy of the COMSOL-Based Finite-Element Method for Simulating Plasmon-Modified Fluorescence

Accurately modeling plasmon-modified fluorescence is important for understanding and guiding the design of experimental nanostructures that reliably enhance fluorescence. They are of particular interest due to their potential to allow localized "hot spots" of high fluorescence enhancement in a reproducible manner. Given the increasingly prevalent use of the COMSOL Multiphysics software package for simulating these phenomena, we investigate its accuracy using an analytically tractable model consisting of a gold nanosphere interacting with either a plane wave or a radiating point dipole. COMSOL simulation results were compared with a formally exact analytical theory. It was found that simulation parameters commonly used for plane-wave scattering do not necessarily produce accurate results for the nanoparticle-plasmon-coupled dipole emission case. Instead, user-input adaptive meshing parameters were found to be helpful in achieving quantitative agreements between COMSOL and analytical theory results for plasmon-modified fluorescence. Our studies suggest convergence to analytically calculated values when a minimum of two additional user-input mesh elements separate the point-dipole position and the nanoparticle surface. This practical insight is expected to aid in the application of COMSOL simulations to planning and interpreting fluorescence modification experiments.

Membrane Fusion Mediated by Cationic Helical Peptide L-MMBen through Phosphatidylglycerol Recruitment

Membrane fusion is the basis for many biological processes, which holds promise in biomedical applications including the creation of engineered hybrid cells and cell membrane functionalization. Extensive research efforts, including investigations into DNA zippers and carbon nanotubes, have been dedicated to the development of membrane fusion strategies inspired by natural SNARE proteins; nevertheless, achieving a delicate balance between membrane selectivity and high fusion efficiency through precise molecular engineering remains unclear. In our recent study, we successfully designed L-MMBen, a cationic helical antimicrobial peptide that exhibits remarkable antimicrobial efficacy while demonstrating moderate cytotoxicity. In this work, we demonstrate the effective and selective induction of fusion between phosphatidylglycerol (PG)-containing membranes by L-MMBen. By combining biophysical assays at the single-vesicle level with computer simulations at the molecular level, we discovered that L-MMBen can stably adsorb onto the surface of PG-containing membranes, leading to the formation of stalk structures between vesicles and ultimately resulting in membrane fusion. Furthermore, the occurrence of fusion is attributed to the unique ability of L-MMBen to recruit PG lipids and bridge adjacent vesicles. In contrast, its nonhelical counterpart DL-MMBen was found to lack this capability despite possessing an identical positive charge. These findings present an alternative molecule for achieving selective membrane fusion and provide insights for designing helical peptides with diverse applications.

Mixed quantum/classical theory for rotationally inelastic scattering of identical collision partners revised

Mixed quantum/classical theory (MQCT) for the treatment of rotationally inelastic transitions during collisions of two identical molecules, described either as indistinguishable or distinguishable partners, is reviewed. The treatment of two molecules as indistinguishable includes symmetrization of rotational wavefunctions, introduces exchange parity, and leads to state-to-state transition matrix elements different from those in the straightforward treatment of molecules as distinguishable. Moreover, the treatment of collision partners as indistinguishable is eight times faster. Numerical results presented herein for H2 + H2, CO + CO and H2O + H2O systems indicate good agreement of MQCT calculations with full-quantum calculations from the literature and show that an a posteriori correction, applied after treatment of the collision partners as distinguishable, generally produces good results that agree well with the rigorous treatment of collision partners as indistinguishable. This correction for the cross section includes either multiplication by 2 or a summation over physically indistinguishable processes, depending on the transition type. After this correction, the results of the two treatments agree within 5% for most but may reach 10-20% for some transitions. At low collision energies dominated by scattering resonances, these differences can be larger, but they tend to decrease as collision energy is increased. It is also shown that if the system is artificially forced to follow the same collision path in the indistinguishable and distinguishable treatments, then all differences between the results of the two treatments disappear. This interesting finding gives new insight into the collision process and indicates that the indistinguishability of identical collision partners comes into play through the collision path itself, rather than through matrix elements of inelastic transitions.

Spectroscopic Signature of Metal-hydroxo and Peroxo Species in K-edge X-ray Absorption Spectra

Metal-dioxygen species are important intermediates formed during dioxygen activations by metalloenzymes in various biological processes, by catalysts in fuel cells, and prior to O2 evolution by photosystem II. In this work, we focus on manganese-porphyrin complexes using tetramesitylporphyrin ligand (TMP) to explore changes in Mn K-edge X-ray absorption spectroscopy (XAS) associated with the formation of Mn-hydroxide and Mn-O2 peroxide species. With limited spectroscopic characterization of these compounds, Mn Kβ X-ray emission spectroscopy (XES), XAS, density functional theory (DFT), and time-dependent DFT (TD-DFT) analysis will enhance our understanding of their complex electronic structure. We show that the shape of the pre-edge in the K-edge Mn X-ray absorption near-edge structure (XANES) can serve as a spectroscopic signature of the MnIII-peroxo formation and thus can be used to track the presence of the side-on peroxide as an intermediate in time-resolved or in situ experiments. Our results will help to further summarize the spectroscopic fingerprints for peroxo and hydroxo species, addressing the challenge of identifying the reactive metal species in catalytic reactions.

The efficient triplet states formation of Se-modified PDI dimers and tetramers in solvents

The triplet excited states of molecules play an important role in photophysical processes, which has attracted great research interest. Perylene diimide (PDI) is a widely studied material closely associated with the generation of triplet states, and it is highly anticipated to become an electron acceptor material for improving photovoltaic conversion efficiency. In this work, we prepared dimers and tetramers composed of selenium-modified PDI-C5 (N,N'-bis(6-undecyl) perylene-3,4,9,10-bis(dicarboximide)) units. We investigated the photophysical processes of these dimers and tetramers in chloroform and toluene using UV-visible absorption spectroscopy, fluorescence spectroscopy, and femtosecond transient absorption spectroscopy. Both the dimers and tetramers undergo efficient triplet state formation processes in the solvents. Solvents with higher polarity facilitate charge transfer thereby promote the triplet states formation. The differences in the configurations of the dimer and tetramer molecules lead to variations in triplet states generation. The twisted angles in the tetramer restricted the intramolecular electronic coupling, posing certain hindrances to exciton coupling and lowering the intramolecular CT characteristics. The emission of excimer in tetramers also competes with the triplet states formation. The research demonstrates the influence of various factors on the generation of triplet states of PDI oligomers.

Tailoring intersystem crossing in phosphorus corroles through axial chalcogenation: a detailed theoretical study

Intersystem crossing (ISC) of visible-light absorbing metal-free corrole macrocycles can be greatly tuned by means of suitable chemical functionalization. Axially chalcogenated phosphorus corrole derivatives (XPCs; X = O, S, Se) are expected to show large spin-orbit coupling (SOC) via the heavy-atom effect and therefore a much improved ISC. Excited-state deactivation of XPCs including PC is studied using time-dependent optimally tuned range-separated hybrid functionals combined with a polarizable continuum model with toluene as a dielectric medium to account for polar solvent effects. PC and all XPCs are dynamically stable and also show favourable thermodynamic formation feasibility as confirmed by Gibbs free energy analysis. In spite of the relatively smaller contribution of P and X to the frontier molecular orbitals compared to the tetrapyrrolic ring, SOC is considerably improved due to the heavy-atom effect. While PC shows a one-order larger ISC rate of ∼107 s-1 than fluorescence, competitive fluorescence and ISC rates of ∼107 s-1 are found for OPC. In contrast, both SPC and SePC exhibit significantly larger ISC rates of ∼109 s-1 and ∼1013 s-1, respectively, with much smaller fluorescence rates of ∼107 s-1. Importantly, the first report of anti-Kasha's emission in metal-free corroles is predicted for OPC with a radiative rate of ∼109 s-1. Furthermore, calculated phosphorescence and ISC rates from the near-degenerate lowest excited triplets to the ground-state suggest millisecond to microsecond triplet lifetimes, signalling towards long-lived excited triplet formation. Overall, all three XPCs including PC could act as triplet photosensitizers and especially both SPC and SePC are predicted to be the highly efficient ones.

Spectroscopic Differentiation of Structural Transitions from Carbon Nanobelts to Carbon Nanotubes

In this study, simulated X-ray photoelectron spectroscopy (XPS) and Raman spectroscopy were utilized to differentiate the early stage structures as carbon nanobelts (CNBs) evolved into carbon nanotubes (CNTs). The effects of edge type, length, and diameter on the spectroscopic characteristics of armchair and zigzag CNTs were examined. Variations in XPS spectra were found to correspond to changes in the bandgap, while Raman spectra provided distinct bands associated with specific structural features. Notably, in armchair CNTs, the C 1s XPS peak positions exhibited clear differences depending on the structure. Additionally, the Kekulé vibration band and other characteristic bands in Raman spectra varied with length and diameter, enabling differentiation of armchair CNT structures. Although the structural analysis of zigzag CNTs was challenging using XPS, Raman spectroscopy proved to be effective in distinguishing structural differences. This study lays the groundwork for future spectroscopic analyses, contributing to the broader understanding of nanocarbon materials such as CNBs and CNTs and their potential applications in advanced electronic materials.

Orbital entanglement and the double d-shell effect in binary transition metal molecules

Accurate modeling of transition metal-containing compounds is of great interest due to their wide-ranging and significant applications. These systems present several challenges from an electronic structure perspective, including significant multi-reference characters and many chemically relevant orbitals. A further complication arises from the so-called double d-shell effect, which is known to cause a myriad of issues in the treatment of first-row transition metals with both single- and multi-reference methods. While this effect has been well documented for several decades, a comprehensive understanding of its consequences and underlying causes is still evolving. Here, we characterize the second d-shell effect by analyzing the information entropy of correlated wavefunctions in a periodic series of 3d and 4d transition metal molecular hydrides and oxides. These quantum information techniques provide unique insight into the nuanced electronic structure of these species and are powerful tools for the study of weak and strong correlations in the transition metal d manifold.

Preferential Binding of Cations Modulates Electrostatically Driven Protein Aggregation and Disaggregation

Protein aggregation resulting in either ordered amyloids or amorphous aggregates is not only restricted to deadly human diseases but also associated with biotechnological challenges encountered in the therapeutic and food industries. Elucidating the key structural determinants of protein aggregation is important to devise targeted inhibitory strategies, but it still remains a formidable task owing to the underlying hierarchy, stochasticity, and complexity associated with the self-assembly processes. Additionally, alterations in solution pH, salt types, and ionic strength modulate various noncovalent interactions, thus affecting the protein aggregation propensity and the aggregation kinetics. However, the molecular origin and a detailed understanding of the effects of weakly and strongly hydrated salts on protein aggregation and their plausible roles in the dissolution of aggregates remain elusive. In this study, using fluorescence and circular dichroism spectroscopy in combination with electron microscopy and light scattering techniques, we show that the ionic size, valency, and extent of hydration of cations play a crucial role in regulating the protein aggregation and disaggregation processes, which may elicit unique methods for governing the balance between protein self-assembly and disassembly.

What Can CISS Teach Us about Electron Transfer?

Electron transfer (eT) processes have garnered the attention of chemists and physicists for more than seven decades, and it is commonly believed that the essential features of the electron transfer mechanism are well understood─despite some open questions relating to the efficiency of long-range eT in some systems and temperature effects that are difficult to reconcile with the existing theories. The chiral induced spin selectivity (CISS) effect, which has been studied experimentally since 1999, demonstrates that eT through chiral systems depends on the electron's spin. Attempts to explain the CISS effect by adding spin-orbit coupling to the existing eT theories fails to reproduce the experimental results quantitatively, and it has become evident that the theory for explaining CISS must consider electron-vibration and/or electron-electron interactions. In this Perspective we identify some features of the CISS effect that imply that we should reconsider and refine the Marcus-Levich-Jortner mechanistic description for eT processes, especially for nonlinear systems and in the case of long-range eT.

Periodic Bonding Behaviors of Actinide Atoms (An = Th-Cm) with Negatively Curved Nanographene

The nanographene with negative curvature has been extensively studied due to its interesting properties and potential applications. In the present work, we have performed all-electron scalar relativistic density functional theory (DFT) calculations to understand the periodic interaction mechanisms of actinide atoms (An = Th, Cm) with the TB8C nanographene. The encapsulated complexes (An@TB8C) were formed due to the octagonal vacancy in the TB8C nanographene. TB8C shows fairly high affinity toward An atoms, especially for Th and Pa. AIMD simulations further confirmed the effective trapping of An atom with TB8C. The partial covalent characters of An-C bonds in An@TB8C were revealed through various bond analysis methods. The 6d electrons of An play an important role in the participation of chemical bonds. The delocalization index (DI) is proposed as a useful descriptor in the study of bond strength involving the actinides. Electronic absorption spectra were simulated for further identification in the experiments. The current work has expanded the potential molecular properties and applications of nanographene.

Gaussian processes for finite size extrapolation of many-body simulations

Key to being able to accurately model the properties of realistic materials is being able to predict their properties in the thermodynamic limit. Nevertheless, because most many-body electronic structure methods scale as a high-order polynomial, or even exponentially, with system size, directly simulating large systems in their thermodynamic limit rapidly becomes computationally intractable. As a result, researchers typically estimate the properties of large systems that approach the thermodynamic limit by extrapolating the properties of smaller, computationally-accessible systems based on relatively simple scaling expressions. In this work, we employ Gaussian processes to more accurately and efficiently extrapolate many-body simulations to their thermodynamic limit. We train our Gaussian processes on Smooth Overlap of Atomic Positions (SOAP) descriptors to extrapolate the energies of one-dimensional hydrogen chains obtained using two high-accuracy many-body methods: coupled cluster theory and Auxiliary Field Quantum Monte Carlo (AFQMC). In so doing, we show that Gaussian processes trained on relatively short 10-30-atom chains can predict the energies of both homogeneous and inhomogeneous hydrogen chains in their thermodynamic limit with sub-milliHartree accuracy. Unlike standard scaling expressions, our GPR-based approach is highly generalizable given representative training data and is not dependent on systems' geometries or dimensionality. This work highlights the potential for machine learning to correct for the finite size effects that routinely complicate the interpretation of finite size many-body simulations.

Efficient Ground-State Recovery of UV-Photoexcited p-Nitrophenol in Aqueous Solution by Direct and Multistep Pathways

Nitroaromatic compounds are found in brown carbon aerosols emitted to the Earth's atmosphere by biomass burning, and are important organic chromophores for the absorption of solar radiation. Here, transient absorption spectroscopy spanning 100 fs-8 μs is used to explore the pH-dependent photochemical pathways for aqueous solutions of p-nitrophenol, chosen as a representative nitroaromatic compound. Broadband ultrafast UV-visible and infrared probes are used to characterize the excited states and intermediate species involved in the multistep photochemistry, and to determine their lifetimes under different pH conditions. The assignment of absorption bands, and the dynamical interpretation of our experimental measurements are supported by computational calculations. After 320 nm photoexcitation to the first bright state, which has 1ππ* character in the Franck-Condon region, and ultrafast (∼200 fs) structural relaxation in the adiabatic S1 state to a region with 1nπ* electronic character, the S1 p-nitrophenol population decays on a time scale of ∼12 ps. This decay involves competition between direct internal conversion to the S0 state (∼40%) and rapid intersystem crossing to the triplet manifold (∼60%). Population in the T1-state decays by excited-state proton transfer (ESPT) to the surrounding water and relaxation of the resulting triplet-state p-nitrophenolate anion to its S0 electronic ground state in ∼5 ns. Reprotonation of the S0-state p-nitrophenolate anion recovers p-nitrophenol in its electronic ground state. Overall recovery of the S0 state of aqueous p-nitrophenol via these competing pathways is close to 100% efficient. The experimental observations help to explain why nitroaromatic compounds such as p-nitrophenol resist photo-oxidative degradation in the environment.

Selective Oxyfunctionalization of Benzylic C-H with No Solvent

The direct selective oxyfunctionalization of C-H into C═O represents a highly useful, yet challenging, synthetic methodology. Herein, a one-step oxyfunctionalization of benzylic C-H into aryl ketone, with no overoxidation of the -OH functional group, is reported through mechanochemistry. The substrate scope is also tolerant of a wide range of different functional groups, providing a particularly sustainable yet widely adaptable route for the synthesis of aryl ketones, which represent both a classic synthetic precursor and a useful strategy for lignin monomer valorization. A series of mechanistic and spectroscopic investigations were also conducted to shed light on the unique C-H over -OH selectivity, opening up new avenues for oxidation chemistry.

Programmable Plasma-Microdroplet Cascade Reactions for Multicomponent Systems

The concept of programmable cascade reactions in charged microdroplets is introduced using carbon-carbon (C-C) bond formation via uncatalyzed Michael addition in a three-tier study culminating in programmable Hantzsch multicomponent, multistep reactions. In situ generated reactive oxygen species (ROS) from nonthermal plasma discharge are fused with charged water microdroplets (devoid of ROS) in real time for accelerated chemical reactions. This plasma-microdroplet fusion platform utilizing a coaxial spray configuration enabled product selection while avoiding unwanted side reactions. Hydrogen abstraction via ROS facilitated the formation of enolate anions without strong base use. Reaction enhancement factors >103 were calculated for plasma-microdroplet fusion versus microdroplet-only reactions. The platform programmability was showcased through (i) uncatalyzed 1,4-Michael addition of α,β-unsaturated carbonyls, (ii) novel C-C bond formation via the use of pro-electrophilic amine and alcohol substrates─activated through collisions in the microdroplet environment to serve as Michael acceptors, and (iii) selective Hantzsch cascade reaction with cross-coupling products, avoiding side reactions including N-alkylation and self-coupling product formation. Milligram quantity product collection is achieved, showcasing plasma-microdroplet fusion as an effective tool for preparative-scale synthesis. Thus, the controlled generation of ROS via plasma discharge during charged water microdroplet evolution establishes a green synthetic method for uncatalyzed C-C bond formation.

A Novel A105Y Mutant of CYP17A1 Exhibits Almost Perfect Regioselectivity in the Production of 17α-Hydroxyprogesterone

17α-Hydroxyprogesterone (17α-OHP) is a steroid hormone with significant biological activity that can be obtained by catalyzing progesterone (PROG), the main product of sitosterol, through CYP17A1. However, increasing the catalytic specificity of HCYP17A1 for C17 hydroxylation of progesterone (PROG) poses a formidable challenge due to the close proximity of the C16 and C17 positions. In this study, a rational design was utilized to alter the spatial configuration of the substrate channel, leading to the complete abolition of its 16-hydroxylation activity. Subsequent molecular dynamics simulations revealed that the A105Y mutation heightened the rigidity of the G95-I112 region of CYP17A1, consequently regulating the direction of the entry of PROG into the catalytic pocket. Moreover, the establishment of hydrogen bonding between Y105 and R239, coupled with Pi-stacking of A105Y with F114, effectively immobilizes the substrate PROG in a fixed position, explaining the practically perfect regioselectivity observed in A105Y. Finally, a multifaceted enzymatic cascade system, incorporating A105Y, cytochrome P450 reductase (CPR), and glucose-6-phosphate dehydrogenase (ZWF) for NADPH cofactor regeneration, was constructed in Pichia pastoris GS115. The resulting biocatalyst produced 106 ± 3.2 mg L-1 17α-OHP, a 4.6-fold increase compared with A105Y alone. Thus, this study provides valuable insights for improving the regioselectivity and activity of P450 enzymes.

Liquid Metal-Based Elastomer Composite with Selective Switchable Adhesion to Solids

Selective switchable adhesion has recently attracted much attention due to its wide applications in transfer printing, information transfer, and flexible electronics. However, selective adhesive materials often have a complex adhesion or preparation process, which limits their use. To overcome this problem, this study prepares a composite of liquid metal foam and polydimethylsiloxane (PDMS) with selective photocontrolled adhesion, which can directly adhere to solids at room temperature. Utilizing the photoinduced phase transition of liquid metals, solid adhesion can be regulated by changing the backing layer modulus of the adhesive layer. Since the phase transition process is gradually completed by heat transfer from the illuminated side to the backlight side that adheres to the solid, the melting area on the backlight side can be regulated by controlling the light time, which determines the adhesion regulation area. Therefore, the accuracy of the adhesion regulation can reach less than 0.9 mm without relying on the accuracy of the infrared light. Moreover, based on the selective switchable adhesion, the selective transfer of solids with different scales can be achieved at room temperature. The findings of this study may provide strategies for the simple preparation of selective adhesive materials and the improvement of control accuracy.

Selective C-N Bond Cleavage in Unstrained Pyrrolidines Enabled by Lewis Acid and Photoredox Catalysis

Cleavage of inert C-N bonds in unstrained azacycles such as pyrrolidine remains a formidable challenge in synthetic chemistry. To address this, we introduce an effective strategy for the reductive cleavage of the C-N bond in N-benzoyl pyrrolidine, leveraging a combination of Lewis acid and photoredox catalysis. This method involves single-electron transfer to the amide, followed by site-selective cleavage at the C2-N bond. Cyclic voltammetry and NMR studies demonstrated that the Lewis acid is crucial for promoting the single-electron transfer from the photoredox catalyst to the amide carbonyl group. This protocol is widely applicable to various pyrrolidine-containing molecules and enables inert C-N bond cleavage including C-C bond formation via intermolecular radical addition. Furthermore, the current protocol successfully converts pyrrolidines to aziridines, γ-lactones, and tetrahydrofurans, showcasing its potential of the inert C-N bond cleavage for expanding synthetic strategies.

Pyrene-Functionalized Ru-Catenated Metallacycles: Conversion of Catenated System to Monorectangle through Aging

Molecular transformation behavior within a mechanically interlocked system is often assisted by chemical manipulation, such as the inclusion of guest molecules, variation in the solution concentration, or swapping of solvents. We present in this report the synthesis of ruthenium metal and π-conjugated pyrene-based (2 + 2)2 catenated rectangles. Additionally, we discuss the structural conversion of these catenated rectangles into monorectangles through adjustments in concentration and solvent composition. In the presence of a methanol solution, a transformation into monorectangles was observed as the concentration declined. However, interestingly, in the presence of a nitromethane solution, an alteration in conformation to monorectangles was noted by just standing at room temperature for a few hours without any chemical manipulation. Furthermore, theoretical calculations were studied to provide insights into the formation of catenated structures over other potential ring-in-ring or Borromean-ring-type structures. The computational study with the GFN2-xTB method combined with density functional theory (DFT) calculations showed that the lower binding energy within the rectangles favors a catenated structure over other potential ring-in-ring or Borromean-ring-type structures. This work represents a new example of an intertwined structure that self-assembles into a catenated ring rather than a ring-in-ring or Borromean ring and transforms into a monorectangle in nitromethane without the use of any template, alteration in solution concentration, or exchange of solvents, but simply by standing at room temperature.

C-H Insertion from Isolable Copper Benzylidenes

Despite the utility of copper catalysts for the insertion of carbene moieties into C-H bonds, the copper carbene intermediate often invoked in these transformations has not been isolated. Herein, we describe the synthesis and structural characterization of a series of copper benzylidenes utilizing the sterically encumbered dipyrrin ligand (EmL)H. These isolated copper carbenes demonstrate intramolecular insertion into the primary C(sp3)-H bond of the ligand (EmL)H and intermolecular insertion into ethereal and allylic C-H bonds. The copper carbenes isolated are best described as Cu(I) carbene adducts akin to canonical Fischer carbenes, given their diamagnetic ground state and electrophilic carbene reactivity. Furthermore, the insertion chemistry can be rendered catalytic utilizing a more sterically exposed dipyrrin ligand (ArFL)H. The ability to isolate and observe stoichiometric C-H insertion and olefin cyclopropanation from well-characterized copper benzylidenes illuminates their viability as catalytic intermediates and their participation in potential catalyst deactivation pathways.

Entropically and enthalpically driven self-assembly of a naphthalimide-based luminescent organic π-amphiphile in water

The self-assembly of π conjugated systems in water has emerged as an efficient method for the development of functional materials for biological applications. But the process is more difficult to understand and to control in water compared to organic solvents due to hydrophobic effects. For π-conjugated molecules, self-assembly in solution generally occurs due to either an enthalpic or entropic gain, but designing π systems that undergo self-assembly via both an entropically and enthalpically favorable process is challenging. Herein, we elucidate in detail the self-assembly of a luminescent naphthalene monoamide-based dipolar π-bolaamphiphile appended with a primary amine and triethylene glycol monomethyl ether (NMI-W) side chain into a vesicular nanostructure. By utilizing a detailed isothermal titration calorimetry (ITC) experiment, we have calculated the thermodynamic parameters associated with the self-assembly of NMI-W in water. Interestingly, the NMI-W shows both entropically and enthalpically favorable robust self-assembly into a vesicular structure, which can encapsulate both hydrophilic and hydrophobic guest molecules. The synergistic effect of dipole-dipole, π-π stacking and hydrophobic interactions of the NMI chromophore is found to be very crucial in driving self-assembly in an aqueous medium as revealed by various experiments and molecular dynamics.

Organometallic Chemistry Tools for Building Biologically Relevant Nanoscale Systems

The recent emergence of organometallic chemistry for modification of biomolecular nanostructures has begun to rewrite the long-standing assumption among practitioners that small-molecule organometallics are fundamentally incompatible with biological systems. This Perspective sets out to clarify some of the existing misconceptions by focusing on the growing organometallic toolbox for biomolecular modification. Specifically, we highlight key organometallic transformations in constructing complex biologically relevant systems on the nanomolecular scale, and the organometallic synthesis of hybrid nanomaterials composed of classical nanomaterial components combined with biologically relevant species. As research progresses, many of the challenges associated with applying organometallic chemistry in this context are rapidly being reassessed. Looking to the future, the growing utility of organometallic transformations will likely make them more ubiquitous in the construction and modification of biomolecular nanostructures.

Electrochemical Formation of C2+ Products Steered by Bridge-Bonded *CO Confined by *OH Domains

During the electrochemical CO2 reduction reaction (eCO2RR) on copper catalysts, linear-bonded CO (*COL) is commonly regarded as the key intermediate for the CO-CO coupling step, which leads to the formation of multicarbon products. In this work, we unveil the significant role of bridge-bonded *CO (*COB) as an active species. By combining in situ Raman spectroscopy, gas and liquid chromatography, and density functional theory (DFT) simulations, we show that adsorbed *OH domains displace *COL to *COB. The electroreduction of a 12CO+13CO2 cofeed demonstrates that *COB distinctly favors the production of acetate and 1-propanol, while *COL favors ethylene and ethanol formation. This work enhances our understanding of the mechanistic intricacies of eCO(2)RR and suggests new directions for designing operational conditions by modifying the competitive adsorption of surface species, thereby steering the reaction toward specific multicarbon products.

Enzymatic self-assembly of short peptides for cell spheroid formation

Cell spheroids, including organoids, serve as a valuable link between in vitro systems and in vivo animal models, offering powerful tools for studying cell biology in a three-dimensional environment. However, existing methods for generating cell spheroids are time consuming or difficult to scale up for large-scale production. Our recent study has revealed that transcytotic peptide assemblies, which transform from nanoparticles to nanofibers by enzymatic reactions, can create an intercellular fibril/gel, accelerating cell spheroid formation from a 2D cell culture or a cell suspension. While this finding presents an alternative approach for generating cell spheroids, the specific structural features required for efficient cell spheroid formation remain unclear. Based on our observation that a phosphotetrapeptide with a biphenyl cap at its N-terminus enables cell spheroid formation, we produced 10 variants of the original peptide. The variants explored modifications to the peptide backbone, length, electronic properties of the biphenyl capping group, and the type of phosphorylated amino acid residue. We then evaluated their ability for inducing cell spheroid formation. Our analysis revealed that, among the tested molecules, peptides with C-terminal phosphotyrosine, low critical micelle concentration, and dephosphorylation-guided nanoparticle to nanofiber morphological transition were the most effective in inducing the formation of cell spheroids. This work represents the first example to correlate the thermodynamic properties (e.g., self-assembling ability) and kinetic behavior (e.g., enzymatic dephosphorylation) of peptides with the efficacy of controlling intercellular interaction, thus offering valuable insights into using enzymatic self-assembly to generate peptide assemblies for biological applications.

Rhodium-Catalyzed Enantioselective Ring-Openings of Oxabicyclic Alkenes with Azole Nucleophiles

We report enantioselective ring-openings of oxabicyclic alkenes with azole nucleophiles, generating heterocycle-bearing dihydronaphthalene products. Pyrazoles, triazoles, tetrazoles, and benzo-fused derivatives participate in the ring-opening, with the level of regioselectivity depending on the type and substitution pattern of the heterocyclic partner. Electron-withdrawing azole substituents have a beneficial effect, suppressing the unproductive complexation of a nitrogen with the Rh(I)-bis(phosphine) catalyst.

Improving the sulfite-detection performance of a fluorescent probe via post-synthetic modification with a metal-organic framework

In this work, a post-synthetic modification strategy was attempted to improve the performance of the probe for sulfite detection. The assembled platform UiO-66-NH-DQA, which was acquired by anchoring the sulfite-response fluorescent probe DQA onto the surface of UiO-66-NH2via amide covalent bonds, exhibited enhanced fluorescence intensity and practical intracellular imaging capability. In spite of the structural similarity, as verified by characterization tests, the conversion rate of post-synthetic modification was calculated as 35%, equaling an approximate assembly ratio of 1 : 2 between UiO-66-NH2 and DQA. Most significantly, conversion into UiO-66-NH-DQA led to a 5.6-fold enhancement in the reporting signal with a red shift of 20 nm. For sulfite detection, the linear range was 0-150 μM, with a limit of detection value of 0.025 μM. UiO-66-NH-DQA retained advantages including high stability (within pH 5.0-9.0), rapid response (within 15 min) and high selectivity. Based on low cytotoxicity and relatively rapid cellular uptake, UiO-66-NH-DQA achieved the imaging of both the exogenous and endogenous sulfite levels in living cells. In particular, its rapid cell-permeating capability was guaranteed during the modification. The post-synthetic modification strategy reported herein has potential for improving the practical properties of fluorescent monitoring materials.

Accelerated Simulations Reveal Physicochemical Factors Governing Stability and Composition of RNA Clusters

Under certain conditions, RNA repeat sequences phase separate, yielding protein-free biomolecular condensates. Importantly, RNA repeat sequences have also been implicated in neurological disorders, such as Huntington's disease. Thus, mapping repeat sequences to their phase behavior, functions, and dysfunctions is an active area of research. However, despite several advances, it remains challenging to characterize the RNA phase behavior at a submolecular resolution. Here, we have implemented a residue-resolution coarse-grained model in LAMMPS─that incorporates both the RNA sequence and structure─to study the clustering propensities of protein-free RNA systems. Importantly, we achieve a multifold speedup in the simulation time compared to previous work. Leveraging this efficiency, we study the clustering propensity of all 20 nonredundant trinucleotide repeat sequences. Our results align with findings from experiments, emphasizing that canonical base-pairing and G-U wobble pairs play dominant roles in regulating cluster formation of RNA repeat sequences. Strikingly, we find strong entropic contributions to the stability and composition of RNA clusters, which is demonstrated for single-component RNA systems as well as binary mixtures of trinucleotide repeats. Additionally, we investigate the clustering behaviors of trinucleotide (odd) repeats and their quadranucleotide (even) counterparts. We observe that odd repeats exhibit stronger clustering tendencies, attributed to the presence of consecutive base pairs in their sequences that are disrupted in even repeat sequences. Altogether, our work extends the set of computational tools for probing RNA cluster formation at submolecular resolution and uncovers physicochemical principles that govern the stability and composition of the resulting clusters.

Rhodium-Catalyzed C-H Arylation of Indoles with Arylsilanes at Room Temperature

The Cp*Rh-catalyzed C-H arylation of indoles with arylsilanes is developed. This C-H activation transformation allows for the Rh-catalyzed indole C2 arylation to overcome the limitations of requiring strong directing group assistance and high-temperature conditions, achieving a room-temperature transformation driven by a weak directing group. Cp*Rh/MeOH catalytic media are considered a key factor enabling this transformation to occur under mild conditions, and experimental studies and theoretical calculations were performed to rationalize the reaction mechanisms and the influence of methanol as a solvent in promoting the reaction.

Anthracene-Based Endoperoxides as Self-Sensitized Singlet Oxygen Carriers for Hypoxic-Tumor Photodynamic Therapy

Singlet oxygen is a crucial reactive oxygen species (ROS) in photodynamic therapy (PDT). However, the hypoxic tumor microenvironment limits the production of cytotoxic singlet oxygen through the light irradiation of PDT photosensitizers (PSs). This restriction poses a major challenge in improving the effectiveness of PDT. To overcome this challenge, researchers have explored the development of singlet oxygen carriers that can capture and release singlet oxygen in physiological conditions. Among these developments, anthracene-based endoperoxides, initially discovered almost 100 years ago, have shown the ability to generate singlet oxygen controllably under thermal or photo stimuli. Recent advancements have led to the development of a new class of self-sensitized anthracene-endoperoxides, with potential applications in enhancing PDT effects for hypoxic tumors. This review discusses the current research progress in utilizing self-sensitized anthracene-endoperoxides as singlet oxygen carriers for improved PDT. It covers anthracene-conjugated small organic molecules, metal-organic complexes, polymeric structures, and other self-sensitized nano-structures. The molecular structural designs, mechanisms, and characteristics of these systems will be discussed. This review aims to provide valuable insights for developing high-performance singlet oxygen carriers for hypoxic-tumor PDT.

Quantum embedding for molecules using auxiliary particles - the ghost Gutzwiller Ansatz

Strong/static electronic correlation mediates the emergence of remarkable phases of matter, and underlies the exceptional reactivity properties in transition metal-based catalysts. Modeling strongly correlated molecules and solids calls for multi-reference Ansätze, which explicitly capture the competition of energy scales characteristic of such systems. With the efficient computational screening of correlated solids in mind, the ghost Gutzwiller (gGut) Ansatz has been recently developed. This is a variational Ansatz which can be formulated as a self-consistent embedding approach, describing the system within a non-interacting, quasiparticle model, yet providing accurate spectra in both low and high energy regimes. Crucially, small fragments of the system are identified as responsible for the strong correlation, and are therefore enhanced by adding a set of auxiliary orbitals, the ghosts. These capture many-body correlations through one-body fluctuations and subsequent out-projection when computing physical observables. gGut has been shown to accurately describe multi-orbital lattice models at modest computational cost. In this work, we extend the gGut framework to strongly correlated molecules, for which it holds special promise. Indeed, despite the asymmetric embedding treatment, the quasiparticle Hamiltonian effectively describes all major sources of correlation in the molecule: strong correlation through the ghosts in the fragment, and dynamical correlation through the quasiparticle description of its environment. To adapt the gGut Ansatz for molecules, we address the fact that, unlike in the lattice model previously considered, electronic interactions in molecules are not local. Hence, we explore a hierarchy of approximations of increasing accuracy capturing interactions between fragments and environment, and within the environment, and discuss how these affect the embedding description of correlations in the whole molecule. We will compare the accuracy of the gGut model with established methods to capture strong correlation within active space formulations, and assess the realistic use of this novel approximation to the theoretical description of correlated molecular clusters.