251
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Wang Z, Li T, Wen X, Liu Y, Han J, Liao Y, DeBruyn JM. Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth. Front Microbiol 2017; 8:1301. [PMID: 28744278 PMCID: PMC5504275 DOI: 10.3389/fmicb.2017.01301] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2017] [Accepted: 06/27/2017] [Indexed: 01/22/2023] Open
Abstract
Conservation tillage is an extensively used agricultural practice in northern China that alters soil texture and nutrient conditions, causing changes in the soil microbial community. However, how conservation tillage affects rhizosphere and bulk soil fungal communities during plant growth remains unclear. The present study investigated the effect of long-term (6 years) conservation (chisel plow, zero) and conventional (plow) tillage during wheat growth on the rhizosphere fungal community, using high-throughput sequencing of the internal transcribed spacer (ITS) gene and quantitative PCR. During tillering, fungal alpha diversity in both rhizosphere and bulk soil were significantly higher under zero tillage compared to other methods. Although tillage had no significant effect during the flowering stage, fungal alpha diversity at this stage was significantly different between rhizosphere and bulk soils, with bulk soil presenting the highest diversity. This was also reflected in the phylogenetic structure of the communities, as rhizosphere soil communities underwent a greater shift from tillering to flowering compared to bulk soil communities. In general, less variation in community structure was observed under zero tillage compared to plow and chisel plow treatments. Changes in the relative abundance of the fungal orders Capnodiales, Pleosporales, and Xylariales contributed the highest to the dissimilarities observed. Structural equation models revealed that the soil fungal communities under the three tillage regimes were likely influenced by the changes in soil properties associated with plant growth. This study suggested that: (1) differences in nutrient resources between rhizosphere and bulk soils can select for different types of fungi thereby increasing community variation during plant growth; (2) tillage can alter fungal communities' variability, with zero tillage promoting more stable communities. This work suggests that long-term changes in tillage regimes may result in unique soil fungal ecology, which might influence other aspects of soil functioning (e.g., decomposition).
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Affiliation(s)
- Ziting Wang
- College of Agronomy, Northwest A&F UniversityYangling, China
| | - Tong Li
- College of Agronomy, Northwest A&F UniversityYangling, China
| | - Xiaoxia Wen
- College of Agronomy, Northwest A&F UniversityYangling, China
| | - Yang Liu
- College of Agronomy, Northwest A&F UniversityYangling, China
| | - Juan Han
- College of Agronomy, Northwest A&F UniversityYangling, China
| | - Yuncheng Liao
- College of Agronomy, Northwest A&F UniversityYangling, China
| | - Jennifer M DeBruyn
- Department of Biosystems Engineering and Soil Science, The University of TennesseeKnoxville, TN, United States
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252
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Tsai HH, Schmidt W. Mobilization of Iron by Plant-Borne Coumarins. TRENDS IN PLANT SCIENCE 2017; 22:538-548. [PMID: 28385337 DOI: 10.1016/j.tplants.2017.03.008] [Citation(s) in RCA: 103] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2016] [Revised: 03/06/2017] [Accepted: 03/13/2017] [Indexed: 05/19/2023]
Abstract
Iron is one of the most abundant elements in soils, but its low phytoavailability at high pH restricts plant communities on alkaline soils to taxa that have evolved efficient strategies to increase iron solubility. Recent evidence provides support for a previously underestimated role of root-secreted coumarins in mobilizing iron through reduction and chelation as part of an orchestrated strategy evolved to improve the acquisition of iron from recalcitrant pools. Understanding the mechanisms that tune the production of iron-mobilizing coumarins and their intricate interplay with other biosynthesis pathways could yield clues for deciphering the molecular basis of 'iron efficiency' - the ability of plants to thrive on soils with limited iron availability - and may open avenues for generating iron-fortified crops.
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Affiliation(s)
- Huei Hsuan Tsai
- Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, Academia Sinica and National Chung Hsing University, Taipei 11529, Taiwan; Graduate Institute of Biotechnology, National Chung-Hsing University, Taichung 40227, Taiwan; Institute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan
| | - Wolfgang Schmidt
- Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, Academia Sinica and National Chung Hsing University, Taipei 11529, Taiwan; Institute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan; Biotechnology Center, National Chung-Hsing University, Taichung 40227, Taiwan; Genome and Systems Biology Degree Program, College of Life Science, National Taiwan University, Taipei 10617, Taiwan.
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253
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Xu D, Hanschen FS, Witzel K, Nintemann SJ, Nour-Eldin HH, Schreiner M, Halkier BA. Rhizosecretion of stele-synthesized glucosinolates and their catabolites requires GTR-mediated import in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:3205-3214. [PMID: 27702989 PMCID: PMC5853541 DOI: 10.1093/jxb/erw355] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2016] [Accepted: 09/06/2016] [Indexed: 05/18/2023]
Abstract
Casparian strip-generated apoplastic barriers not only control the radial flow of both water and ions but may also constitute a hindrance for the rhizosecretion of stele-synthesized phytochemicals. Here, we establish root-synthesized glucosinolates (GLS) are in Arabidopsis as a model to study the transport routes of plant-derived metabolites from the site of synthesis to the rhizosphere. Analysing the expression of GLS synthetic genes in the root indicate that the stele is the major site for the synthesis of aliphatic GLS, whereas indole GLS can be synthesized in both the stele and the cortex. Sampling root exudates from the wild type and the double mutant of the GLS importers GTR1 and GTR2 show that GTR-mediated retention of stele-synthesized GLS is a prerequisite for the exudation of both intact GLS and their catabolites into the rhizosphere. The expression of the GTRs inside the stele, combined with the previous observation that GLS are exported from biosynthetic cells, suggest three possible routes of stele-synthesized aliphatic GLS after their synthesis: (i) GTR-dependent import to cells symplastically connected to the cortical cells and the rhizosphere; (ii) GTR-independent transport via the xylem to the shoot; and (iii) GTR-dependent import to GLS-degrading myrosin cells at the cortex. The study suggests a previously undiscovered role of the import process in the rhizosecretion of root-synthesized phytochemicals.
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Affiliation(s)
- Deyang Xu
- DynaMo Center, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Thorvaldsensvej, Frederiksberg C, Denmark
| | - Franziska S Hanschen
- Department of Plant Quality, Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg, Grossbeeren, Germany
| | - Katja Witzel
- Department of Plant Health, Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg, Grossbeeren, Germany
| | - Sebastian J Nintemann
- DynaMo Center, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Thorvaldsensvej, Frederiksberg C, Denmark
| | - Hussam Hassan Nour-Eldin
- DynaMo Center, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Thorvaldsensvej, Frederiksberg C, Denmark
| | - Monika Schreiner
- Department of Plant Quality, Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg, Grossbeeren, Germany
| | - Barbara Ann Halkier
- DynaMo Center, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Thorvaldsensvej, Frederiksberg C, Denmark
- Correspondence:
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254
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Rozp¹dek P, Domka A, Turnau K. Chapter 29 Mycorrhizal Fungi and Accompanying Microorganisms in Improving Phytoremediation Techniques. Mycology 2017. [DOI: 10.1201/9781315119496-30] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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255
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Massalha H, Korenblum E, Tholl D, Aharoni A. Small molecules below-ground: the role of specialized metabolites in the rhizosphere. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 90:788-807. [PMID: 28333395 DOI: 10.1111/tpj.13543] [Citation(s) in RCA: 109] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 03/17/2017] [Accepted: 03/21/2017] [Indexed: 05/18/2023]
Abstract
Soil communities are diverse taxonomically and functionally. This ecosystem experiences highly complex networks of interactions, but may also present functionally independent entities. Plant roots, a metabolically active hotspot in the soil, take an essential part in below-ground interactions. While plants are known to release an extremely high portion of the fixated carbon to the soil, less information is known about the composition and role of C-containing compounds in the rhizosphere, in particular those involved in chemical communication. Specialized metabolites (or secondary metabolites) produced by plants and their associated microbes have a critical role in various biological activities that modulate the behavior of neighboring organisms. Thus, elucidating the chemical composition and function of specialized metabolites in the rhizosphere is a key element in understanding interactions in this below-ground environment. Here, we review key classes of specialized metabolites that occur as mostly non-volatile compounds in root exudates or are emitted as volatile organic compounds (VOCs). The role of these metabolites in below-ground interactions and response to nutrient deficiency, as well as their tissue and cell type-specific biosynthesis and release are discussed in detail.
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Affiliation(s)
- Hassan Massalha
- Department of Plant Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Elisa Korenblum
- Department of Plant Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Dorothea Tholl
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | - Asaph Aharoni
- Department of Plant Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
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256
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Eisenhauer N, Lanoue A, Strecker T, Scheu S, Steinauer K, Thakur MP, Mommer L. Root biomass and exudates link plant diversity with soil bacterial and fungal biomass. Sci Rep 2017; 7:44641. [PMID: 28374800 PMCID: PMC5379681 DOI: 10.1038/srep44641] [Citation(s) in RCA: 145] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Accepted: 02/13/2017] [Indexed: 11/30/2022] Open
Abstract
Plant diversity has been shown to determine the composition and functioning of soil biota. Although root-derived organic inputs are discussed as the main drivers of soil communities, experimental evidence is scarce. While there is some evidence that higher root biomass at high plant diversity increases substrate availability for soil biota, several studies have speculated that the quantity and diversity of root inputs into the soil, i.e. though root exudates, drive plant diversity effects on soil biota. Here we used a microcosm experiment to study the role of plant species richness on the biomass of soil bacteria and fungi as well as fungal-to-bacterial ratio via root biomass and root exudates. Plant diversity significantly increased shoot biomass, root biomass, the amount of root exudates, bacterial biomass, and fungal biomass. Fungal biomass increased most with increasing plant diversity resulting in a significant shift in the fungal-to-bacterial biomass ratio at high plant diversity. Fungal biomass increased significantly with plant diversity-induced increases in root biomass and the amount of root exudates. These results suggest that plant diversity enhances soil microbial biomass, particularly soil fungi, by increasing root-derived organic inputs.
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Affiliation(s)
- Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.,Institute of Biology, Leipzig University, Johannisallee 21, 04103 Leipzig, Germany
| | - Arnaud Lanoue
- Université François Rabelais de Tours. EA 2106 Plant Biotechnology and Biomolecules, 31 Avenue Monge, F-37200 Tours, France
| | - Tanja Strecker
- Georg August University Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Berliner Str. 28, 37073 Göttingen, Germany
| | - Stefan Scheu
- Georg August University Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Berliner Str. 28, 37073 Göttingen, Germany
| | - Katja Steinauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.,Institute of Biology, Leipzig University, Johannisallee 21, 04103 Leipzig, Germany
| | - Madhav P Thakur
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.,Institute of Biology, Leipzig University, Johannisallee 21, 04103 Leipzig, Germany
| | - Liesje Mommer
- Plant Ecology and Nature Conservation group, Wageningen University, PO Box 47, 6700 AA Wageningen, The Netherlands
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257
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Preston GM. Profiling the extended phenotype of plant pathogens: Challenges in Bacterial Molecular Plant Pathology. MOLECULAR PLANT PATHOLOGY 2017; 18:443-456. [PMID: 28026146 PMCID: PMC6638297 DOI: 10.1111/mpp.12530] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Revised: 12/20/2016] [Accepted: 12/21/2016] [Indexed: 05/18/2023]
Abstract
One of the most fundamental questions in plant pathology is what determines whether a pathogen grows within a plant? This question is frequently studied in terms of the role of elicitors and pathogenicity factors in the triggering or overcoming of host defences. However, this focus fails to address the basic question of how the environment in host tissues acts to support or restrict pathogen growth. Efforts to understand this aspect of host-pathogen interactions are commonly confounded by several issues, including the complexity of the plant environment, the artificial nature of many experimental infection systems and the fact that the physiological properties of a pathogen growing in association with a plant can be very different from the properties of the pathogen in culture. It is also important to recognize that the phenotype and evolution of pathogen and host are inextricably linked through their interactions, such that the environment experienced by a pathogen within a host, and its phenotype within the host, is a product of both its interaction with its host and its evolutionary history, including its co-evolution with host plants. As the phenotypic properties of a pathogen within a host cannot be defined in isolation from the host, it may be appropriate to think of pathogens as having an 'extended phenotype' that is the product of their genotype, host interactions and population structure within the host environment. This article reflects on the challenge of defining and studying this extended phenotype, in relation to the questions posed below, and considers how knowledge of the phenotype of pathogens in the host environment could be used to improve disease control. What determines whether a pathogen grows within a plant? What aspects of pathogen biology should be considered in describing the extended phenotype of a pathogen within a host? How can we study the extended phenotype in ways that provide insights into the phenotypic properties of pathogens during natural infections?
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Affiliation(s)
- Gail M. Preston
- Department of Plant SciencesUniversity of OxfordSouth Parks RoadOxfordOX1 3RBUK
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258
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De Novo Assembly, Annotation, and Characterization of Root Transcriptomes of Three Caladium Cultivars with a Focus on Necrotrophic Pathogen Resistance/Defense-Related Genes. Int J Mol Sci 2017; 18:ijms18040712. [PMID: 28346370 PMCID: PMC5412298 DOI: 10.3390/ijms18040712] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Revised: 03/21/2017] [Accepted: 03/24/2017] [Indexed: 01/11/2023] Open
Abstract
Roots are vital to plant survival and crop yield, yet few efforts have been made to characterize the expressed genes in the roots of non-model plants (root transcriptomes). This study was conducted to sequence, assemble, annotate, and characterize the root transcriptomes of three caladium cultivars (Caladium × hortulanum) using RNA-Seq. The caladium cultivars used in this study have different levels of resistance to Pythiummyriotylum, the most damaging necrotrophic pathogen to caladium roots. Forty-six to 61 million clean reads were obtained for each caladium root transcriptome. De novo assembly of the reads resulted in approximately 130,000 unigenes. Based on bioinformatic analysis, 71,825 (52.3%) caladium unigenes were annotated for putative functions, 48,417 (67.4%) and 31,417 (72.7%) were assigned to Gene Ontology (GO) and Clusters of Orthologous Groups (COG), respectively, and 46,406 (64.6%) unigenes were assigned to 128 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. A total of 4518 distinct unigenes were observed only in Pythium-resistant "Candidum" roots, of which 98 seemed to be involved in disease resistance and defense responses. In addition, 28,837 simple sequence repeat sites and 44,628 single nucleotide polymorphism sites were identified among the three caladium cultivars. These root transcriptome data will be valuable for further genetic improvement of caladium and related aroids.
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259
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Weiller F, Moore JP, Young P, Driouich A, Vivier MA. The Brassicaceae species Heliophila coronopifolia produces root border-like cells that protect the root tip and secrete defensin peptides. ANNALS OF BOTANY 2017; 119:803-813. [PMID: 27481828 PMCID: PMC5379576 DOI: 10.1093/aob/mcw141] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Revised: 05/03/2016] [Accepted: 06/02/2016] [Indexed: 05/16/2023]
Abstract
Background and Aims Root border cells and border-like cells (BLCs), the latter originally described in Arabidopsis thaliana , have been described as cells released at the root tips of the species in which they occur. BLCs are thought to provide protection to root meristems similar to classical root border cells. In addition, four defensin peptides (Hc-AFP1-4) have previously been characterized from Heliophila coronopifolia , a South African semi-desert flower, and found to be strongly antifungal. This provided an opportunity to evaluate if the BLCs of H. coronopifolia indeed produce these defensins, which would provide evidence towards a defence role for BLCs. Methods Fluorescence microscopy, using live-cell-imaging technology, was used to characterize the BLCs of H. coronopifolia . Quantitative real-time PCR (qRT-PCR) analysis and immunofluorescence microscopy was used to characterize these defensin peptides. Key Results BLCs originated at the root apical meristem and formed a protective sheath at the tip and along the sides as the root elongated in solid medium. BLCs have a cellulose-enriched cell wall, intact nuclei and are embedded in a layer of pectin-rich mucilage. Pectinase treatments led to the dissolution of the sheath and dissociation of the root BLCs. Hc-AFP1-4 genes were all expressed in root tissues, but Hc-AFP3 transcripts were the most abundant in these tissues as measured by qRT-PCR. A polyclonal antibody that was cross-reactive with all four defensins, and probably recognizing a general plant defensin epitope, was used in fluorescence microscopy analysis to examine the presence of the peptides in the root tip and BLCs. Data confirmed the peptides present in the root tip tissues, the mucilage sheath and the BLCs. Conclusions This study provides a link between defensin peptides and BLCs, both embedded in a protective pectin mucilage sheath, during normal plant growth and development. The presence of the Hc-AFP3 defensin peptides in the BLCs suggests a role for these cells in root protection.
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Affiliation(s)
- Florent Weiller
- Institute for Wine Biotechnology, Department of Viticulture and Oenology, Faculty of AgriSciences, Stellenbosch University, Matieland 7602, South Africa
- Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV), Grand Réseau de Recherche VASI de Haute Normandie, Normandie Université, Université de Rouen, 76821 Mont Saint Aignan cedex, France
| | - John P. Moore
- Institute for Wine Biotechnology, Department of Viticulture and Oenology, Faculty of AgriSciences, Stellenbosch University, Matieland 7602, South Africa
| | - Philip Young
- Institute for Wine Biotechnology, Department of Viticulture and Oenology, Faculty of AgriSciences, Stellenbosch University, Matieland 7602, South Africa
| | - Azeddine Driouich
- Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV), Grand Réseau de Recherche VASI de Haute Normandie, Normandie Université, Université de Rouen, 76821 Mont Saint Aignan cedex, France
| | - Melané A. Vivier
- Institute for Wine Biotechnology, Department of Viticulture and Oenology, Faculty of AgriSciences, Stellenbosch University, Matieland 7602, South Africa
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260
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Rugova A, Puschenreiter M, Koellensperger G, Hann S. Elucidating rhizosphere processes by mass spectrometry – A review. Anal Chim Acta 2017; 956:1-13. [DOI: 10.1016/j.aca.2016.12.044] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Revised: 12/27/2016] [Accepted: 12/28/2016] [Indexed: 12/20/2022]
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261
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Gillet FX, Bournaud C, Antonino de Souza Júnior JD, Grossi-de-Sa MF. Plant-parasitic nematodes: towards understanding molecular players in stress responses. ANNALS OF BOTANY 2017; 119:775-789. [PMID: 28087659 PMCID: PMC5378187 DOI: 10.1093/aob/mcw260] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Revised: 10/24/2016] [Indexed: 05/05/2023]
Abstract
BACKGROUND Plant-parasitic nematode interactions occur within a vast molecular plant immunity network. Following initial contact with the host plant roots, plant-parasitic nematodes (PPNs) activate basal immune responses. Defence priming involves the release in the apoplast of toxic molecules derived from reactive species or secondary metabolism. In turn, PPNs must overcome the poisonous and stressful environment at the plant-nematode interface. The ability of PPNs to escape this first line of plant immunity is crucial and will determine its virulence. SCOPE Nematodes trigger crucial regulatory cytoprotective mechanisms, including antioxidant and detoxification pathways. Knowledge of the upstream regulatory components that contribute to both of these pathways in PPNs remains elusive. In this review, we discuss how PPNs probably orchestrate cytoprotection to resist plant immune responses, postulating that it may be derived from ancient molecular mechanisms. The review focuses on two transcription factors, DAF-16 and SKN-1 , which are conserved in the animal kingdom and are central regulators of cell homeostasis and immune function. Both regulate the unfolding protein response and the antioxidant and detoxification pathways. DAF-16 and SKN-1 target a broad spectrum of Caenorhabditis elegans genes coding for numerous protein families present in the secretome of PPNs. Moreover, some regulatory elements of DAF-16 and SKN-1 from C. elegans have already been identified as important genes for PPN infection. CONCLUSION DAF-16 and SKN-1 genes may play a pivotal role in PPNs during parasitism. In the context of their hub status and mode of regulation, we suggest alternative strategies for control of PPNs through RNAi approaches.
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Affiliation(s)
- François-Xavier Gillet
- Embrapa Genetic Resources and Biotechnology, PqEB Final Av. W/5 Norte, CEP 70·770-900, Brasília, DF, Brazil
| | - Caroline Bournaud
- Embrapa Genetic Resources and Biotechnology, PqEB Final Av. W/5 Norte, CEP 70·770-900, Brasília, DF, Brazil
| | | | - Maria Fatima Grossi-de-Sa
- Embrapa Genetic Resources and Biotechnology, PqEB Final Av. W/5 Norte, CEP 70·770-900, Brasília, DF, Brazil
- Catholic University of Brasilia, Brasília-DF, Brazil
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262
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Guzmán-Guillén R, Campos A, Machado J, Freitas M, Azevedo J, Pinto E, Almeida A, Cameán AM, Vasconcelos V. Effects of Chrysosporum (Aphanizomenon) ovalisporum extracts containing cylindrospermopsin on growth, photosynthetic capacity, and mineral content of carrots (Daucus carota). ECOTOXICOLOGY (LONDON, ENGLAND) 2017; 26:22-31. [PMID: 27770233 DOI: 10.1007/s10646-016-1737-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 09/29/2016] [Indexed: 06/06/2023]
Abstract
Natural toxins produced by freshwater cyanobacteria, such as cylindrospermopsin, have been regarded as an emergent environmental threat. Despite the risks for food safety, the impact of these water contaminants in agriculture is not yet fully understood. Carrots (Daucus carota) are root vegetables, extensively consumed worldwide with great importance for human nourishment and economy. It is, therefore, important to evaluate the possible effects of using water contaminated with cyanotoxins on carrot cultivation. The aim of this work was to investigate cylindrospermopsin effects on D. carota grown in soil and irrigated for 30 days, with a Chrysosporum ovalisporum extract containing environmentally relevant concentrations of cylindrospermopsin (10 and 50 μg/L). The parameters evaluated were plant growth, photosynthetic capacity, and nutritional value (mineral content) in roots of carrots, as these are the edible parts of this plant crop. The results show that, exposure to cylindrospermopsin did not have a clear negative effect on growth or photosynthesis of D. carota, even leading to an increase of both parameters. However, alterations in mineral contents were detected after exposure to crude extracts of C. ovalisporum containing cylindrospermopsin. A general decline was observed for most minerals (Ca, Mg, Na, Fe, Mn, Zn, Mo, and P), although an increase was shown in the case of K and Cu, pointing to a possible interference of the cyanobacterial extract in mineral uptake. This study is the first to evaluate the effects of C. ovalisporum extracts on a root vegetable, however, more research is necessary to understand the effects of this toxin in environmentally relevant scenarios.
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Affiliation(s)
| | - Alexandre Campos
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Porto, 4050-123, Portugal.
| | - Joana Machado
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Porto, 4050-123, Portugal
| | - Marisa Freitas
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Porto, 4050-123, Portugal
- Department of Environmental Health, Escola Superior de Tecnologia da Saúde do Porto, Polytechnic Institute of Porto, CISA/Research Center in Environment and Health, Rua de Valente Perfeito, 322, Gaia, 4400-330, Portugal
| | - Joana Azevedo
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Porto, 4050-123, Portugal
| | - Edgar Pinto
- LAQV/REQUIMTE, Department of Chemical Sciences, Laboratory of Applied Chemistry, Department of Pharmacy, University of Porto, Rua de Jorge Viterbo Ferreira 228, Porto, 4050-313, Portugal
- Department of Environmental Health, Escola Superior de Tecnologia da Saúde do Porto, Polytechnic Institute of Porto, CISA/Research Center in Environment and Health, Rua de Valente Perfeito, 322, Gaia, 4400-330, Portugal
| | - Agostinho Almeida
- LAQV/REQUIMTE, Department of Chemical Sciences, Laboratory of Applied Chemistry, Department of Pharmacy, University of Porto, Rua de Jorge Viterbo Ferreira 228, Porto, 4050-313, Portugal
| | - Ana M Cameán
- Area of Toxicology, Department of Pharmacy, University of Sevilla, Sevilla, Spain
| | - Vitor Vasconcelos
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Porto, 4050-123, Portugal
- Department of Biology, Department of Sciences of the University of Porto, Porto, 4169-007, Portugal
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263
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Robertson-Albertyn S, Alegria Terrazas R, Balbirnie K, Blank M, Janiak A, Szarejko I, Chmielewska B, Karcz J, Morris J, Hedley PE, George TS, Bulgarelli D. Root Hair Mutations Displace the Barley Rhizosphere Microbiota. FRONTIERS IN PLANT SCIENCE 2017; 8:1094. [PMID: 28694814 PMCID: PMC5483447 DOI: 10.3389/fpls.2017.01094] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2017] [Accepted: 06/06/2017] [Indexed: 05/03/2023]
Abstract
The rhizosphere, the thin layer of soil surrounding and influenced by plant roots, defines a distinct and selective microbial habitat compared to unplanted soil. The microbial communities inhabiting the rhizosphere, the rhizosphere microbiota, engage in interactions with their host plants which span from parasitism to mutualism. Therefore, the rhizosphere microbiota emerges as one of the determinants of yield potential in crops. Studies conducted with different plant species have unequivocally pointed to the host plant as a driver of the microbiota thriving at the root-soil interface. Thus far, the host genetic traits shaping the rhizosphere microbiota are not completely understood. As root hairs play a critical role in resource exchanges between plants and the rhizosphere, we hypothesized that they can act as a determinant of the microbiota thriving at the root-soil interface. To test this hypothesis, we took advantage of barley (Hordeum vulgare) mutant lines contrasting for their root hair characteristics. Plants were grown in two agricultural soils, differentiating in their organic matter contents, under controlled environmental conditions. At early stem elongation rhizosphere specimens were collected and subjected to high-resolution 16S rRNA gene profiling. Our data revealed that the barley rhizosphere microbiota is largely dominated by members of the phyla Bacteroidetes and Proteobacteria, regardless of the soil type and the root hair characteristics of the host plant. Conversely, ecological indices calculated using operational taxonomic units (OTUs) presence, abundance, and phylogeny revealed a significant impact of root hair mutations on the composition of the rhizosphere microbiota. In particular, our data indicate that mutant plants host a reduced-complexity community compared to wild-type genotypes and unplanted soil controls. Congruently, the host genotype explained up to 18% of the variation in ecological distances computed for the rhizosphere samples. Importantly, this effect is manifested in a soil-dependent manner. A closer inspection of the sequencing profiles revealed that the root hair-dependent diversification of the microbiota is supported by a taxonomically narrow group of bacteria, with a bias for members of the orders Actinomycetales, Burkholderiales, Rhizobiales, Sphingomonadales, and Xanthomonadales. Taken together, our results indicate that the presence and function of root hairs are a determinant of the bacterial community thriving in the rhizosphere and their perturbations can markedly impact on the recruitment of individual members of the microbiota.
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Affiliation(s)
| | | | - Katharin Balbirnie
- Plant Sciences, School of Life Sciences, University of DundeeDundee, United Kingdom
| | - Manuel Blank
- Plant Sciences, School of Life Sciences, University of DundeeDundee, United Kingdom
| | - Agnieszka Janiak
- Department of Genetics, University of Silesia in KatowiceKatowice, Poland
| | - Iwona Szarejko
- Department of Genetics, University of Silesia in KatowiceKatowice, Poland
| | - Beata Chmielewska
- Department of Genetics, University of Silesia in KatowiceKatowice, Poland
| | - Jagna Karcz
- Scanning Electron Microscopy Laboratory, University of Silesia in KatowiceKatowice, Poland
| | - Jenny Morris
- Cell and Molecular Sciences, The James Hutton InstituteDundee, United Kingdom
| | - Pete E. Hedley
- Cell and Molecular Sciences, The James Hutton InstituteDundee, United Kingdom
| | - Timothy S. George
- Ecological Sciences, The James Hutton InstituteDundee, United Kingdom
| | - Davide Bulgarelli
- Plant Sciences, School of Life Sciences, University of DundeeDundee, United Kingdom
- *Correspondence: Davide Bulgarelli,
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264
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Wouters FC, Blanchette B, Gershenzon J, Vassão DG. Plant defense and herbivore counter-defense: benzoxazinoids and insect herbivores. PHYTOCHEMISTRY REVIEWS : PROCEEDINGS OF THE PHYTOCHEMICAL SOCIETY OF EUROPE 2016; 15:1127-1151. [PMID: 27932939 DOI: 10.1007/s11101-016-9481-9481] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Accepted: 10/21/2016] [Indexed: 05/28/2023]
Abstract
Benzoxazinoids are a class of indole-derived plant chemical defenses comprising compounds with a 2-hydroxy-2H-1,4-benzoxazin-3(4H)-one skeleton and their derivatives. These phytochemicals are widespread in grasses, including important cereal crops such as maize, wheat and rye, as well as a few dicot species, and display a wide range of antifeedant, insecticidal, antimicrobial, and allelopathic activities. Although their overall effects against insect herbivores are frequently reported, much less is known about how their modes of action specifically influence insect physiology. The present review summarizes the biological activities of benzoxazinoids on chewing, piercing-sucking, and root insect herbivores. We show how within-plant distribution modulates the exposure of different herbivore feeding guilds to these defenses, and how benzoxazinoids may act as toxins, feeding deterrents and digestibility-reducing compounds under different conditions. In addition, recent results on the metabolism of benzoxazinoids by insects and their consequences for plant-herbivore interactions are addressed, as well as directions for future research.
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Affiliation(s)
- Felipe C Wouters
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
| | - Blair Blanchette
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
| | - Daniel G Vassão
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
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265
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Liu Y, Liu F, Wang C, Quan Z, Li J. Effects of Bt-transgenic rice cultivation on planktonic communities in paddy fields and adjacent ditches. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 565:690-697. [PMID: 27219503 DOI: 10.1016/j.scitotenv.2016.05.103] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Revised: 05/14/2016] [Accepted: 05/15/2016] [Indexed: 06/05/2023]
Abstract
The non-target effects of transgenic plants are issues of concern; however, their impacts in cultivated agricultural fields and adjacent natural aquatic ecosystems are poorly understood. We conducted field experiments during two growing seasons to determine the effects of cultivating Bacillus thuringiensis (Bt)-transgenic rice on the phytoplankton and zooplankton communities in a paddy field and an adjacent ditch. Bt toxin was detected in soil but not in water. Water quality was not significantly different between non-Bt and Bt rice fields, but varied among up-, mid- and downstream locations in the ditch. Cultivation of Bt-transgenic rice had no effects on zooplankton communities. Phytoplankton abundance and biodiversity were not significantly different between transgenic and non-transgenic rice fields in 2013; however, phytoplankton were more abundant in the transgenic rice field than in the non-transgenic rice field in 2014. Water quality and rice type explained 65.9% and 12.8% of this difference in 2014, respectively. Phytoplankton and zooplankton were more abundant in mid- and downstream, than upstream, locations in the ditch, an effect that we attribute to water quality differences. Thus, the release of Bt toxins into field water during the cultivation of transgenic crops had no direct negative effects on plankton community composition, but indirect effects that alter environmental conditions should be taken into account during the processes of management planning and policymaking.
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Affiliation(s)
- Yongbo Liu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
| | - Fang Liu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Chao Wang
- Pearl River Fisheries Research Institute, Chinese Academy of Fishery Science, Guangzhou 510380, China
| | - Zhanjun Quan
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Junsheng Li
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
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266
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Wang M, Sun Y, Gu Z, Wang R, Sun G, Zhu C, Guo S, Shen Q. Nitrate Protects Cucumber Plants Against Fusarium oxysporum by Regulating Citrate Exudation. PLANT & CELL PHYSIOLOGY 2016; 57:2001-12. [PMID: 27481896 DOI: 10.1093/pcp/pcw124] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2016] [Accepted: 07/05/2016] [Indexed: 05/25/2023]
Abstract
Fusarium wilt causes severe yield losses in cash crops. Nitrogen plays a critical role in the management of plant disease; however, the regulating mechanism is poorly understood. Using biochemical, physiological, bioinformatic and transcriptome approaches, we analyzed how nitrogen forms regulate the interactions between cucumber plants and Fusarium oxysporum f. sp. cucumerinum (FOC). Nitrate significantly suppressed Fusarium wilt compared with ammonium in both pot and hydroponic experiments. Fewer FOC colonized the roots and stems under nitrate compared with ammonium supply. Cucumber grown with nitrate accumulated less fusaric acid (FA) after FOC infection and exhibited increased tolerance to chemical FA by decreasing FA absorption and transportation in shoots. A lower citrate concentration was observed in nitrate-grown cucumbers, which was associated with lower MATE (multidrug and toxin compound extrusion) family gene and citrate synthase (CS) gene expression, as well as lower CS activity. Citrate enhanced FOC spore germination and infection, and increased disease incidence and the FOC population in ammonium-treated plants. Our study provides evidence that nitrate protects cucumber plants against F. oxysporum by decreasing root citrate exudation and FOC infection. Citrate exudation is essential for regulating disease development of Fusarium wilt in cucumber plants.
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Affiliation(s)
- Min Wang
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
| | - Yuming Sun
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
| | - Zechen Gu
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
| | - Ruirui Wang
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
| | - Guomei Sun
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
| | - Chen Zhu
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
| | - Shiwei Guo
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
| | - Qirong Shen
- Jiangsu Key Lab for Organic Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095, China
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267
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Phylogeny Explains Variation in The Root Chemistry of Eucalyptus Species. J Chem Ecol 2016; 42:1086-1097. [DOI: 10.1007/s10886-016-0750-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2016] [Revised: 06/28/2016] [Accepted: 06/30/2016] [Indexed: 12/29/2022]
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268
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Rasmann S, Turlings TC. Root signals that mediate mutualistic interactions in the rhizosphere. CURRENT OPINION IN PLANT BIOLOGY 2016; 32:62-68. [PMID: 27393937 DOI: 10.1016/j.pbi.2016.06.017] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2016] [Revised: 06/27/2016] [Accepted: 06/27/2016] [Indexed: 06/06/2023]
Abstract
A recent boom in research on belowground ecology is rapidly revealing a multitude of fascinating interactions, in particular in the rhizosphere. Many of these interactions are mediated by photo-assimilates that are excreted by plant roots. Root exudates are not mere waste products, but serve numerous functions to control abiotic and biotic processes. These functions range from changing the chemical and physical properties of the soil, inhibiting the growth of competing plants, combatting herbivores, and regulating the microbial community. Particularly intriguing are root-released compounds that have evolved to serve mutualistic interactions with soil-dwelling organisms. These mutually beneficial plant-mediated signals are not only of fundamental ecological interest, but also exceedingly important from an agronomical perspective. Here, we attempt to provide an overview of the plant-produced compounds that have so far been implicated in mutualistic interactions. We propose that these mutualistic signals may have evolved from chemical defenses and we point out that they can be (mis)used by specialized pathogens and herbivores. We speculate that many more signals and interactions remain to be uncovered and that a good understanding of the mechanisms and ecological implications can be the basis for exploitation and manipulation of the signals for crop improvement and protection.
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Affiliation(s)
- Sergio Rasmann
- Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.
| | - Ted Cj Turlings
- Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland
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269
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Mus F, Crook MB, Garcia K, Garcia Costas A, Geddes BA, Kouri ED, Paramasivan P, Ryu MH, Oldroyd GED, Poole PS, Udvardi MK, Voigt CA, Ané JM, Peters JW. Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes. Appl Environ Microbiol 2016. [PMID: 27084023 DOI: 10.1128/aem.01055-01016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2023] Open
Abstract
Access to fixed or available forms of nitrogen limits the productivity of crop plants and thus food production. Nitrogenous fertilizer production currently represents a significant expense for the efficient growth of various crops in the developed world. There are significant potential gains to be had from reducing dependence on nitrogenous fertilizers in agriculture in the developed world and in developing countries, and there is significant interest in research on biological nitrogen fixation and prospects for increasing its importance in an agricultural setting. Biological nitrogen fixation is the conversion of atmospheric N2 to NH3, a form that can be used by plants. However, the process is restricted to bacteria and archaea and does not occur in eukaryotes. Symbiotic nitrogen fixation is part of a mutualistic relationship in which plants provide a niche and fixed carbon to bacteria in exchange for fixed nitrogen. This process is restricted mainly to legumes in agricultural systems, and there is considerable interest in exploring whether similar symbioses can be developed in nonlegumes, which produce the bulk of human food. We are at a juncture at which the fundamental understanding of biological nitrogen fixation has matured to a level that we can think about engineering symbiotic relationships using synthetic biology approaches. This minireview highlights the fundamental advances in our understanding of biological nitrogen fixation in the context of a blueprint for expanding symbiotic nitrogen fixation to a greater diversity of crop plants through synthetic biology.
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Affiliation(s)
- Florence Mus
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Matthew B Crook
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Kevin Garcia
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Amaya Garcia Costas
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Barney A Geddes
- Department of Plant Sciences, University of Oxford, Oxford, United Kingdom
| | - Evangelia D Kouri
- Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, USA
| | | | - Min-Hyung Ryu
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | | | - Philip S Poole
- Department of Plant Sciences, University of Oxford, Oxford, United Kingdom
| | - Michael K Udvardi
- Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, USA
| | - Christopher A Voigt
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Jean-Michel Ané
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - John W Peters
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
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270
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Mus F, Crook MB, Garcia K, Garcia Costas A, Geddes BA, Kouri ED, Paramasivan P, Ryu MH, Oldroyd GED, Poole PS, Udvardi MK, Voigt CA, Ané JM, Peters JW. Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes. Appl Environ Microbiol 2016; 82:3698-3710. [PMID: 27084023 PMCID: PMC4907175 DOI: 10.1128/aem.01055-16] [Citation(s) in RCA: 227] [Impact Index Per Article: 28.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Access to fixed or available forms of nitrogen limits the productivity of crop plants and thus food production. Nitrogenous fertilizer production currently represents a significant expense for the efficient growth of various crops in the developed world. There are significant potential gains to be had from reducing dependence on nitrogenous fertilizers in agriculture in the developed world and in developing countries, and there is significant interest in research on biological nitrogen fixation and prospects for increasing its importance in an agricultural setting. Biological nitrogen fixation is the conversion of atmospheric N2 to NH3, a form that can be used by plants. However, the process is restricted to bacteria and archaea and does not occur in eukaryotes. Symbiotic nitrogen fixation is part of a mutualistic relationship in which plants provide a niche and fixed carbon to bacteria in exchange for fixed nitrogen. This process is restricted mainly to legumes in agricultural systems, and there is considerable interest in exploring whether similar symbioses can be developed in nonlegumes, which produce the bulk of human food. We are at a juncture at which the fundamental understanding of biological nitrogen fixation has matured to a level that we can think about engineering symbiotic relationships using synthetic biology approaches. This minireview highlights the fundamental advances in our understanding of biological nitrogen fixation in the context of a blueprint for expanding symbiotic nitrogen fixation to a greater diversity of crop plants through synthetic biology.
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Affiliation(s)
- Florence Mus
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Matthew B Crook
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Kevin Garcia
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Amaya Garcia Costas
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
| | - Barney A Geddes
- Department of Plant Sciences, University of Oxford, Oxford, United Kingdom
| | - Evangelia D Kouri
- Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, USA
| | | | - Min-Hyung Ryu
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | | | - Philip S Poole
- Department of Plant Sciences, University of Oxford, Oxford, United Kingdom
| | - Michael K Udvardi
- Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, USA
| | - Christopher A Voigt
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Jean-Michel Ané
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - John W Peters
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
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271
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Kimani VN, Chen L, Liu Y, Raza W, Zhang N, Mungai LK, Shen Q, Zhang R. Characterization of extracellular polymeric substances ofBacillus amyloliquefaciensSQR9 induced by root exudates of cucumber. J Basic Microbiol 2016; 56:1183-1193. [DOI: 10.1002/jobm.201600104] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 05/16/2016] [Indexed: 12/30/2022]
Affiliation(s)
- Veronicah Njeri Kimani
- Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization; National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing P.R. China
| | - Lin Chen
- Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization; National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing P.R. China
| | - Yunpeng Liu
- Key Laboratory of Microbial Resources Collection and Preservation; Ministry of Agriculture; Institute of Agricultural Resources and Regional Planning; Chinese Academy of Agricultural Sciences; Beijing P.R. China
| | - Waseem Raza
- Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization; National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing P.R. China
| | - Nan Zhang
- Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization; National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing P.R. China
| | | | - Qirong Shen
- Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization; National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing P.R. China
| | - Ruifu Zhang
- Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization; National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing P.R. China
- Key Laboratory of Microbial Resources Collection and Preservation; Ministry of Agriculture; Institute of Agricultural Resources and Regional Planning; Chinese Academy of Agricultural Sciences; Beijing P.R. China
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272
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Asari S, Matzén S, Petersen MA, Bejai S, Meijer J. Multiple effects ofBacillus amyloliquefaciensvolatile compounds: plant growth promotion and growth inhibition of phytopathogens. FEMS Microbiol Ecol 2016; 92:fiw070. [DOI: 10.1093/femsec/fiw070] [Citation(s) in RCA: 86] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/29/2016] [Indexed: 01/18/2023] Open
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273
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Pérez-Jaramillo JE, Mendes R, Raaijmakers JM. Impact of plant domestication on rhizosphere microbiome assembly and functions. PLANT MOLECULAR BIOLOGY 2016; 90:635-44. [PMID: 26085172 PMCID: PMC4819786 DOI: 10.1007/s11103-015-0337-7] [Citation(s) in RCA: 290] [Impact Index Per Article: 36.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2015] [Accepted: 06/04/2015] [Indexed: 05/18/2023]
Abstract
The rhizosphere microbiome is pivotal for plant health and growth, providing defence against pests and diseases, facilitating nutrient acquisition and helping plants to withstand abiotic stresses. Plants can actively recruit members of the soil microbial community for positive feedbacks, but the underlying mechanisms and plant traits that drive microbiome assembly and functions are largely unknown. Domestication of plant species has substantially contributed to human civilization, but also caused a strong decrease in the genetic diversity of modern crop cultivars that may have affected the ability of plants to establish beneficial associations with rhizosphere microbes. Here, we review how plants shape the rhizosphere microbiome and how domestication may have impacted rhizosphere microbiome assembly and functions via habitat expansion and via changes in crop management practices, root exudation, root architecture, and plant litter quality. We also propose a "back to the roots" framework that comprises the exploration of the microbiome of indigenous plants and their native habitats for the identification of plant and microbial traits with the ultimate goal to reinstate beneficial associations that may have been undermined during plant domestication.
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Affiliation(s)
- Juan E Pérez-Jaramillo
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6708 PB, Wageningen, The Netherlands
- Sylvius Laboratories, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Rodrigo Mendes
- Laboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, Embrapa Environment, Rodovia SP 340 - km 127.5, Jaguariúna, 13820-000, Brazil
| | - Jos M Raaijmakers
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6708 PB, Wageningen, The Netherlands.
- Sylvius Laboratories, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
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274
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Hamam AM, Britto DT, Flam-Shepherd R, Kronzucker HJ. Measurement of Differential Na(+) Efflux from Apical and Bulk Root Zones of Intact Barley and Arabidopsis Plants. FRONTIERS IN PLANT SCIENCE 2016; 7:272. [PMID: 27014297 PMCID: PMC4781850 DOI: 10.3389/fpls.2016.00272] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2015] [Accepted: 02/21/2016] [Indexed: 05/25/2023]
Abstract
Rapid sodium cycling across the plasma membrane of root cells is widely thought to be associated with Na(+) toxicity in plants. However, the efflux component of this cycling is not well understood. Efflux of Na(+) from root cells is believed to be mediated by Salt Overly-Sensitive-1, although expression of this Na(+)/H(+) antiporter has been localized to the vascular tissue and root meristem. Here, we used a chambered cuvette system in which the distal root of intact salinized barley and Arabidopsis thaliana plants (wild-type and sos1) were isolated from the bulk of the root by a silicone-acrylic barrier, so that we could compare patterns of (24)Na(+) efflux in these two regions of root. In barley, steady-state release of (24)Na(+) was about four times higher from the distal root than from the bulk roots. In the distal root, (24)Na(+) release was pronouncedly decreased by elevated pH (9.2), while the bulk-root release was not significantly affected. In A. thaliana, tracer efflux was about three times higher from the wild-type distal root than from the wild-type bulk root and also three to four times higher than both distal- and bulk-root fluxes of Atsos1 mutants. Elevated pH also greatly reduced the efflux from wild-type roots. These findings support a significant role of SOS1-mediated Na(+) efflux in the distal root, but not in the bulk root.
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275
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Mevalonate-derived quinonemethide triterpenoid from in vitro roots of Peritassa laevigata and their localization in root tissue by MALDI imaging. Sci Rep 2016; 6:22627. [PMID: 26943243 PMCID: PMC4778575 DOI: 10.1038/srep22627] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Accepted: 11/25/2015] [Indexed: 11/08/2022] Open
Abstract
Biosynthetic investigation of quinonemethide triterpenoid 22β-hydroxy-maytenin (2) from in vitro root cultures of Peritassa laevigata (Celastraceae) was conducted using (13)C-precursor. The mevalonate pathway in P. laevigata is responsible for the synthesis of the quinonemethide triterpenoid scaffold. Moreover, anatomical analysis of P. laevigata roots cultured in vitro and in situ showed the presence of 22β-hydroxy-maytenin (2) and maytenin (1) in the tissues from transverse or longitudinal sections with an intense orange color. MALDI-MS imaging confirmed the distribution of (2) and (1) in the more distal portions of the root cap, the outer cell layers, and near the vascular cylinder of P. laevigata in vitro roots suggesting a role in plant defense against infection by microorganisms as well as in the root exudation processes.
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276
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Zeilinger S, Gupta VK, Dahms TES, Silva RN, Singh HB, Upadhyay RS, Gomes EV, Tsui CKM, Nayak S C. Friends or foes? Emerging insights from fungal interactions with plants. FEMS Microbiol Rev 2016; 40:182-207. [PMID: 26591004 PMCID: PMC4778271 DOI: 10.1093/femsre/fuv045] [Citation(s) in RCA: 137] [Impact Index Per Article: 17.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 06/11/2015] [Accepted: 10/11/2015] [Indexed: 12/22/2022] Open
Abstract
Fungi interact with plants in various ways, with each interaction giving rise to different alterations in both partners. While fungal pathogens have detrimental effects on plant physiology, mutualistic fungi augment host defence responses to pathogens and/or improve plant nutrient uptake. Tropic growth towards plant roots or stomata, mediated by chemical and topographical signals, has been described for several fungi, with evidence of species-specific signals and sensing mechanisms. Fungal partners secrete bioactive molecules such as small peptide effectors, enzymes and secondary metabolites which facilitate colonization and contribute to both symbiotic and pathogenic relationships. There has been tremendous advancement in fungal molecular biology, omics sciences and microscopy in recent years, opening up new possibilities for the identification of key molecular mechanisms in plant-fungal interactions, the power of which is often borne out in their combination. Our fragmentary knowledge on the interactions between plants and fungi must be made whole to understand the potential of fungi in preventing plant diseases, improving plant productivity and understanding ecosystem stability. Here, we review innovative methods and the associated new insights into plant-fungal interactions.
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Affiliation(s)
- Susanne Zeilinger
- Institute of Microbiology, University of Innsbruck, Technikerstrasse 25, 6020 Innsbruck, Austria
| | - Vijai K Gupta
- Molecular Glycobiotechnology Group, Discipline of Biochemistry, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
| | - Tanya E S Dahms
- Department of Chemistry and Biochemistry, University of Regina, SK, Canada
| | - Roberto N Silva
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo (USP), 14049-900 Ribeirão Preto, SP, Brazil
| | - Harikesh B Singh
- Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi 221 005, India
| | - Ram S Upadhyay
- Department of Botany, Banaras Hindu University, Varanasi 221 005, India
| | - Eriston Vieira Gomes
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo (USP), 14049-900 Ribeirão Preto, SP, Brazil
| | - Clement Kin-Ming Tsui
- Department of Pathology and Laboratory Medicine, the University of British Columbia, Vancouver, BC, Canada V6T 1Z4
| | - Chandra Nayak S
- Department of Biotechnology, University of Mysore, Mysore-570001, Karnataka, India
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277
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van Dam NM, Bouwmeester HJ. Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication. TRENDS IN PLANT SCIENCE 2016; 21:256-265. [PMID: 26832948 DOI: 10.1016/j.tplants.2016.01.008] [Citation(s) in RCA: 270] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Revised: 12/18/2015] [Accepted: 01/06/2016] [Indexed: 05/19/2023]
Abstract
The rhizosphere is densely populated with a variety of organisms. Interactions between roots and rhizosphere community members are mostly achieved via chemical communication. Root exudates contain an array of primary and secondary plant metabolites that can attract, deter, or kill belowground insect herbivores, nematodes, and microbes, and inhibit competing plants. Metabolomics of root exudates can potentially help us to better understand this chemical dialogue. The main limitations are the proper sampling of the exudate, the sensitivity of the metabolomics platforms, and the multivariate data analysis to identify causal relations. Novel technologies may help to generate a spatially explicit metabolome of the root and its exudates at a scale that is relevant for the rhizosphere community.
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Affiliation(s)
- Nicole M van Dam
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany; Institute of Ecology, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany; Molecular Interaction Ecology, Institute of Water and Wetland Research (IWWR), Radboud University, PO Box 9010, Nijmegen, GL 6500, The Netherlands.
| | - Harro J Bouwmeester
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, Wageningen, PB 6708, The Netherlands.
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278
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Xuan W, Band LR, Kumpf RP, Van Damme D, Parizot B, De Rop G, Opdenacker D, Möller BK, Skorzinski N, Njo MF, De Rybel B, Audenaert D, Nowack MK, Vanneste S, Beeckman T. Cyclic programmed cell death stimulates hormone signaling and root development in
Arabidopsis. Science 2016; 351:384-7. [DOI: 10.1126/science.aad2776] [Citation(s) in RCA: 134] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Wei Xuan
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Weigang No. 1, Nanjing 210095, PR China
| | - Leah R. Band
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
| | - Robert P. Kumpf
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Daniël Van Damme
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Boris Parizot
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Gieljan De Rop
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Davy Opdenacker
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Barbara K. Möller
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Noemi Skorzinski
- Max Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany
| | - Maria F. Njo
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Bert De Rybel
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
- Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703HA Wageningen, Netherlands
| | - Dominique Audenaert
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Moritz K. Nowack
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Steffen Vanneste
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Tom Beeckman
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Gent University, Technologiepark 927, 9052 Ghent, Belgium
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279
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Wouters FC, Blanchette B, Gershenzon J, Vassão DG. Plant defense and herbivore counter-defense: benzoxazinoids and insect herbivores. PHYTOCHEMISTRY REVIEWS : PROCEEDINGS OF THE PHYTOCHEMICAL SOCIETY OF EUROPE 2016; 15:1127-1151. [PMID: 27932939 PMCID: PMC5106503 DOI: 10.1007/s11101-016-9481-1] [Citation(s) in RCA: 103] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Accepted: 10/21/2016] [Indexed: 05/19/2023]
Abstract
Benzoxazinoids are a class of indole-derived plant chemical defenses comprising compounds with a 2-hydroxy-2H-1,4-benzoxazin-3(4H)-one skeleton and their derivatives. These phytochemicals are widespread in grasses, including important cereal crops such as maize, wheat and rye, as well as a few dicot species, and display a wide range of antifeedant, insecticidal, antimicrobial, and allelopathic activities. Although their overall effects against insect herbivores are frequently reported, much less is known about how their modes of action specifically influence insect physiology. The present review summarizes the biological activities of benzoxazinoids on chewing, piercing-sucking, and root insect herbivores. We show how within-plant distribution modulates the exposure of different herbivore feeding guilds to these defenses, and how benzoxazinoids may act as toxins, feeding deterrents and digestibility-reducing compounds under different conditions. In addition, recent results on the metabolism of benzoxazinoids by insects and their consequences for plant-herbivore interactions are addressed, as well as directions for future research.
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Affiliation(s)
- Felipe C. Wouters
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
| | - Blair Blanchette
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
| | - Daniel G. Vassão
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Str. 8, 07745 Jena, Germany
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280
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Baetz U. Root Exudates as Integral Part of Belowground Plant Defence. BELOWGROUND DEFENCE STRATEGIES IN PLANTS 2016. [DOI: 10.1007/978-3-319-42319-7_3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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281
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Gavrilovic S, Yan Z, Jurkiewicz AM, Stougaard J, Markmann K. Inoculation insensitive promoters for cell type enriched gene expression in legume roots and nodules. PLANT METHODS 2016; 12:4. [PMID: 26807140 PMCID: PMC4724153 DOI: 10.1186/s13007-016-0105-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Accepted: 01/05/2016] [Indexed: 05/13/2023]
Abstract
BACKGROUND Establishment and maintenance of mutualistic plant-microbial interactions in the rhizosphere and within plant roots involve several root cell types. The processes of host-microbe recognition and infection require complex signal exchange and activation of downstream responses. These molecular events coordinate host responses across root cell layers during microbe invasion, ultimately triggering changes of root cell fates. The progression of legume root interactions with rhizobial bacteria has been addressed in numerous studies. However, tools to globally resolve the succession of molecular events in the host root at the cell type level have been lacking. To this end, we aimed to identify promoters exhibiting cell type enriched expression in roots of the model legume Lotus japonicus, as no comprehensive set of such promoters usable in legume roots is available to date. RESULTS Here, we use promoter:GUS fusions to characterize promoters stemming from Arabidopsis, tomato (Lycopersicon esculentum) or L. japonicus with respect to their expression in major cell types of the L. japonicus root differentiation zone, which shows molecular and morphological responses to symbiotic bacteria and fungi. Out of 24 tested promoters, 11 showed cell type enriched activity in L. japonicus roots. Covered cell types or cell type combinations are epidermis (1), epidermis and cortex (2), cortex (1), endodermis and pericycle (2), pericycle and phloem (4), or xylem (1). Activity of these promoters in the respective cell types was stable during early stages of infection of transgenic roots with the rhizobial symbiont of L. japonicus, Mesorhizobium loti. For a subset of five promoters, expression stability was further demonstrated in whole plant transgenics as well as in active nodules. CONCLUSIONS 11 promoters from Arabidopsis (10) or tomato (1) with enriched activity in major L. japonicus root and nodule cell types have been identified. Root expression patterns are independent of infection with rhizobial bacteria, providing a stable read-out in the root section responsive to symbiotic bacteria. Promoters are available as cloning vectors. We expect these tools to help provide a new dimension to our understanding of signaling circuits and transcript dynamics in symbiotic interactions of legumes with microbial symbionts.
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Affiliation(s)
- Srdjan Gavrilovic
- Department of Molecular Biology and Genetics, Centre for Carbohydrate Recognition and Signalling (CARB), Aarhus University, Gustav Wieds Vej 10, 8000 Aarhus, Denmark
| | - Zhe Yan
- Department of Molecular Biology and Genetics, Centre for Carbohydrate Recognition and Signalling (CARB), Aarhus University, Gustav Wieds Vej 10, 8000 Aarhus, Denmark
| | - Anna M. Jurkiewicz
- Department of Molecular Biology and Genetics, Centre for Carbohydrate Recognition and Signalling (CARB), Aarhus University, Gustav Wieds Vej 10, 8000 Aarhus, Denmark
| | - Jens Stougaard
- Department of Molecular Biology and Genetics, Centre for Carbohydrate Recognition and Signalling (CARB), Aarhus University, Gustav Wieds Vej 10, 8000 Aarhus, Denmark
| | - Katharina Markmann
- Department of Molecular Biology and Genetics, Centre for Carbohydrate Recognition and Signalling (CARB), Aarhus University, Gustav Wieds Vej 10, 8000 Aarhus, Denmark
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282
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Sugiyama A, Sano CM, Yazaki K, Sano H. Caffeine fostering of mycoparasitic fungi against phytopathogens. PLANT SIGNALING & BEHAVIOR 2016; 11:e1113362. [PMID: 26529400 PMCID: PMC4871636 DOI: 10.1080/15592324.2015.1113362] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Revised: 10/19/2015] [Accepted: 10/21/2015] [Indexed: 05/31/2023]
Abstract
Caffeine (1,3,7-trimethixanthine) is a typical purine alkaloid produced in more than 80 plant species. Its biological role is considered to strengthen plant's defense capabilities, directly as a toxicant to biotic attackers (allelopathy) and indirectly as an activator of defense system (priming). Caffeine is actively secreted into rhizosphere through primary root, and possibly affects the structure of microbe community nearby. The fungal community in coffee plant rhizosphere is enriched with particular species, including Trichoderma family, a mycoparasite that attacks and kills phytopathogens by coiling and destroying their hyphae. In the present study, the caffeine response of 8 filamentous fungi, 4 mycoparasitic Trichoderma, and 4 prey phytopathogens, was examined. Results showed that allelopathic effect of caffeine on fungal growth and development was differential, being stronger on pathogens than on Trichoderma species. Upon confronting, the prey immediately ceased the growth, whereas the predator continued to grow, indicating active mycoparasitism to have occurred. Caffeine enhanced mycoparasitism up to 1.7-fold. Caffeine thus functions in a double-track manner against fungal pathogens: first by direct suppression of growth and development, and second by assisting their natural enemy. These observations suggest that caffeine is a powerful weapon in the arms race between plants and pathogens by fostering enemy's enemy, and we propose the idea of "caffeine fostering" as the third role of caffeine.
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Affiliation(s)
- Akifumi Sugiyama
- Research Institute for Sustainable Humanosphere; Kyoto University; Kyoto, Japan
| | - Cecile M. Sano
- Department of Computer Science; George Washington University; Washington, DC USA
| | - Kazufumi Yazaki
- Research Institute for Sustainable Humanosphere; Kyoto University; Kyoto, Japan
| | - Hiroshi Sano
- Research Institute for Sustainable Humanosphere; Kyoto University; Kyoto, Japan
- Nara Institute of Science and Technology; Nara, Japan
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283
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Liu Y, Li J, Neal Stewart C, Luo Z, Xiao N. The effects of the presence of Bt-transgenic oilseed rape in wild mustard populations on the rhizosphere nematode and microbial communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 530-531:263-270. [PMID: 26047860 DOI: 10.1016/j.scitotenv.2015.05.073] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2015] [Revised: 05/18/2015] [Accepted: 05/18/2015] [Indexed: 05/26/2023]
Abstract
The adventitious presence of transgenic crops in wild plant populations is of ecological and regulatory concern. In this context, their effects on non-target, below-ground organisms are not well understood. Here, we introduced, at various frequencies, Bt-transgenic oilseed rape (OSR, Brassica napus) into wild mustard (Brassica juncea) populations in the presence and absence of the target herbivore (Plutella xylostella). The impacts on soil nematode and microbial communities were assessed in this system. There were no significant changes on the number of nematode genera and abundance in proportions of OSR with mustard. Nonetheless, the Shannon-Wiener and Pielou evenness index was lowest in plant stands containing 50% of Bt-transgenic OSR. Among treatments, there was no significant variation for culturable soil microbes. There was a positive association between foliar herbivory and the abundance of plant parasitic (PP) and cp-3 nematodes, whereas there was no association between herbivory and soil microbial populations. There was no direct effects of the presence of Bt-transgenic OSR in wild mustard populations on the rhizosphere nematode and microbial communities, whereas its indirect effects via aboveground herbivory might be important to consider for biosafety assessments.
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Affiliation(s)
- Yongbo Liu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
| | - Junsheng Li
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - C Neal Stewart
- Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Drive, Knoxville, TN 37996-4561, USA
| | - Zunlan Luo
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Nengwen Xiao
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
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284
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Calmodulin-binding transcription activators and perspectives for applications in biotechnology. Appl Microbiol Biotechnol 2015; 99:10379-85. [PMID: 26450508 DOI: 10.1007/s00253-015-6966-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Revised: 08/23/2015] [Accepted: 08/26/2015] [Indexed: 01/31/2023]
Abstract
In recent years, a novel family of calmodulin-binding transcription activators (CAMTAs) has been reported in various species. The CAMTAs share a conserved domain organization, with a CG-1 DNA-binding domain, a transcription factor immunoglobulin domain, several ankyrin repeats, a calmodulin-binding domain, and a varying number of IQ motifs. CAMTAs participate in transcriptional regulation by recognizing and binding to a specific cis-element: (G/A/C)CGCG(C/G/T). Plants suffer from the environmental challenges, including abiotic and biotic stresses. Investigations in various plant species indicate a broad range of CAMTA functions involved in developmental regulation, environmental stress response, and hormone cross talk. In this review, we focus on the expression patterns and biological functions of CAMTAs to explore their probable applications in biotechnology. Furthermore, the identification and phylogenetic analysis of CAMTAs in crops could open new perspectives for enhancing stress tolerance, which could lead to improved crop production.
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285
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Chen HY, Huh JH, Yu YC, Ho LH, Chen LQ, Tholl D, Frommer WB, Guo WJ. The Arabidopsis vacuolar sugar transporter SWEET2 limits carbon sequestration from roots and restricts Pythium infection. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015; 83:1046-58. [PMID: 26234706 DOI: 10.1111/tpj.12948] [Citation(s) in RCA: 134] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 07/17/2015] [Accepted: 07/20/2015] [Indexed: 05/04/2023]
Abstract
Plant roots secrete a significant portion of their assimilated carbon into the rhizosphere. The putative sugar transporter SWEET2 is highly expressed in Arabidopsis roots. Expression patterns of SWEET2-β-glucuronidase fusions confirmed that SWEET2 accumulates highly in root cells and thus may contribute to sugar secretion, specifically from epidermal cells of the root apex. SWEET2-green fluorescent protein fusions localized to the tonoplast, which engulfs the major sugar storage compartment. Functional analysis of SWEET2 activity in yeast showed low uptake activity for the glucose analog 2-deoxyglucose, consistent with a role in the transport of glucose across the tonoplast. Loss-of-function sweet2 mutants showed reduced tolerance to excess glucose, lower glucose accumulation in leaves, and 15-25% higher glucose-derived carbon efflux from roots, suggesting that SWEET2 has a role in preventing the loss of sugar from root tissue. SWEET2 root expression was induced more than 10-fold during Pythium infection. Importantly, sweet2 mutants were more susceptible to the oomycete, showing impaired growth after infection. We propose that root-expressed vacuolar SWEET2 modulates sugar secretion, possibly by reducing the availability of glucose sequestered in the vacuole, thereby limiting carbon loss to the rhizosphere. Moreover, the reduced availability of sugar in the rhizosphere due to SWEET2 activity contributes to resistance to Pythium.
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Affiliation(s)
- Hsin-Yi Chen
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
| | - Jung-Hyun Huh
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | - Ya-Chi Yu
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
| | - Li-Hsuan Ho
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
| | - Li-Qing Chen
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA
| | - Dorothea Tholl
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | - Wolf B Frommer
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA
| | - Woei-Jiun Guo
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA
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286
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Kuijken RCP, van Eeuwijk FA, Marcelis LFM, Bouwmeester HJ. Root phenotyping: from component trait in the lab to breeding. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:5389-401. [PMID: 26071534 DOI: 10.1093/jxb/erv239] [Citation(s) in RCA: 100] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
In the last decade cheaper and faster sequencing methods have resulted in an enormous increase in genomic data. High throughput genotyping, genotyping by sequencing and genomic breeding are becoming a standard in plant breeding. As a result, the collection of phenotypic data is increasingly becoming a limiting factor in plant breeding. Genetic studies on root traits are being hampered by the complexity of these traits and the inaccessibility of the rhizosphere. With an increasing interest in phenotyping, breeders and scientists try to overcome these limitations, resulting in impressive developments in automated phenotyping platforms. Recently, many such platforms have been thoroughly described, yet their efficiency to increase genetic gain often remains undiscussed. This efficiency depends on the heritability of the phenotyped traits as well as the correlation of these traits with agronomically relevant breeding targets. This review provides an overview of the latest developments in root phenotyping and describes the environmental and genetic factors influencing root phenotype and heritability. It also intends to give direction to future phenotyping and breeding strategies for optimizing root system functioning. A quantitative framework to determine the efficiency of phenotyping platforms for genetic gain is described. By increasing heritability, managing effects caused by interactions between genotype and environment and by quantifying the genetic relation between traits phenotyped in platforms and ultimate breeding targets, phenotyping platforms can be utilized to their maximum potential.
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Affiliation(s)
- René C P Kuijken
- Wageningen UR, Greenhouse Horticulture, Wageningen, 6708 PB, The Netherlands Wageningen UR, Laboratory of Plant Physiology, Wageningen, 6708 PB, The Netherlands
| | | | - Leo F M Marcelis
- Wageningen UR, Horticulture and Product Physiology, Wageningen, 6708 PB, The Netherlands
| | - Harro J Bouwmeester
- Wageningen UR, Laboratory of Plant Physiology, Wageningen, 6708 PB, The Netherlands
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287
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LoPresti EF. Chemicals on plant surfaces as a heretofore unrecognized, but ecologically informative, class for investigations into plant defence. Biol Rev Camb Philos Soc 2015; 91:1102-1117. [PMID: 26280356 DOI: 10.1111/brv.12212] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2014] [Revised: 06/21/2015] [Accepted: 07/09/2015] [Indexed: 11/28/2022]
Abstract
Plants produce and utilize a great diversity of chemicals for a variety of physiological and ecological purposes. Many of these chemicals defend plants against herbivores, pathogens and competitors. The location of these chemicals varies within the plant, some are located entirely within plant tissues, others exist in the air- (or water-) space around plants, and still others are secreted onto plant surfaces as exudates. I argue herein that the location of a given defensive chemical has profound implications for its ecological function; specifically, I focus on the characteristics of chemical defences secreted onto plant surfaces. Drawing from a broad literature encompassing ecology, evolution, taxonomy and physiology, I found that these external chemical defences (ECDs) are common and widespread in plants and algae; hundreds of examples have been detailed, yet they are not delineated as a separate class from internal chemical defences (ICDs). I propose a novel typology for ECDs and, using existing literature, explore the ecological consequences of the hypothesized unique characteristics of ECDs. The axis of total or proportional investment in ECDs versus ICDs should be considered as one axis of investment by a plant, in the same way as quantitative versus qualitative chemical defences or induced versus constitutive defences is considered. The ease of manipulating ECDs in many plant systems presents a powerful tool to help test plant defence theory (e.g. optimal defence). The framework outlined here integrates various disciplines of botany and ecology and suggests a need for further examinations of exudates in a variety of contexts, as well as recognition of the effects of within-plant localization of defences.
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Affiliation(s)
- Eric F LoPresti
- Department of Entomology, Graduate Group in Ecology, Center for Population Biology, UC-Davis, Davis, CA 95616, U.S.A..
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288
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Pusztahelyi T, Holb IJ, Pócsi I. Secondary metabolites in fungus-plant interactions. FRONTIERS IN PLANT SCIENCE 2015; 6:573. [PMID: 26300892 PMCID: PMC4527079 DOI: 10.3389/fpls.2015.00573] [Citation(s) in RCA: 254] [Impact Index Per Article: 28.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2015] [Accepted: 07/13/2015] [Indexed: 05/18/2023]
Abstract
Fungi and plants are rich sources of thousands of secondary metabolites. The genetically coded possibilities for secondary metabolite production, the stimuli of the production, and the special phytotoxins basically determine the microscopic fungi-host plant interactions and the pathogenic lifestyle of fungi. The review introduces plant secondary metabolites usually with antifungal effect as well as the importance of signaling molecules in induced systemic resistance and systemic acquired resistance processes. The review also concerns the mimicking of plant effector molecules like auxins, gibberellins and abscisic acid by fungal secondary metabolites that modulate plant growth or even can subvert the plant defense responses such as programmed cell death to gain nutrients for fungal growth and colonization. It also looks through the special secondary metabolite production and host selective toxins of some significant fungal pathogens and the plant response in form of phytoalexin production. New results coming from genome and transcriptional analyses in context of selected fungal pathogens and their hosts are also discussed.
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Affiliation(s)
- Tünde Pusztahelyi
- Central Laboratory, Faculty of Agricultural and Food Sciences and Environmental Management, University of DebrecenDebrecen, Hungary
| | - Imre J. Holb
- Faculty of Agricultural and Food Sciences and Environmental Management, Institute of Horticulture, University of DebrecenDebrecen, Hungary
- Department of Plant Pathology, Centre for Agricultural Research, Plant Protection Institute, Hungarian Academy of SciencesDebrecen, Hungary
| | - István Pócsi
- Department of Biotechnology and Microbiology, Faculty of Science and Technology, University of DebrecenDebrecen, Hungary
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289
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Jørgensen ME, Nour-Eldin HH, Halkier BA. Transport of defense compounds from source to sink: lessons learned from glucosinolates. TRENDS IN PLANT SCIENCE 2015; 20:508-14. [PMID: 25979806 DOI: 10.1016/j.tplants.2015.04.006] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2015] [Revised: 04/13/2015] [Accepted: 04/15/2015] [Indexed: 05/20/2023]
Abstract
Plants synthesize a plethora of defense compounds crucial for their survival in a challenging and changing environment. Transport processes are important for shaping the distribution pattern of defense compounds, albeit focus hitherto has been mostly on their biosynthetic pathways. A recent identification of two glucosinolate transporters represents a breakthrough in our understanding of glucosinolate transport in Arabidopsis and has advanced knowledge in transport of defense compounds. In this review, we discuss the role of the glucosinolate transporters in establishing dynamic glucosinolate distribution patterns and source-sink relations. We focus on lessons learned from glucosinolate transport that may apply to transport of other defense compounds and discuss future avenues in the emerging field of defense compound transport.
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Affiliation(s)
- Morten Egevang Jørgensen
- DynaMo, DNRF Center of Excellence, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Hussam Hassan Nour-Eldin
- DynaMo, DNRF Center of Excellence, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Barbara Ann Halkier
- DynaMo, DNRF Center of Excellence, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark.
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290
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Tokizawa M, Kobayashi Y, Saito T, Kobayashi M, Iuchi S, Nomoto M, Tada Y, Yamamoto YY, Koyama H. SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression. PLANT PHYSIOLOGY 2015; 167:991-1003. [PMID: 25627216 PMCID: PMC4348791 DOI: 10.1104/pp.114.256552] [Citation(s) in RCA: 89] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Accepted: 01/22/2015] [Indexed: 05/18/2023]
Abstract
In Arabidopsis (Arabidopsis thaliana) the root apex is protected from aluminum (Al) rhizotoxicity by excretion of malate, an Al chelator, by ALUMINUM-ACTIVATED MALATE TRANSPORTER1 (AtALMT1). AtALMT1 expression is fundamentally regulated by the SENSITIVE TO PROTON RHIZOTOXICITY1 (STOP1) zinc finger protein, but other transcription factors have roles that enable Al-inducible expression with a broad dynamic range. In this study, we characterized multiple cis-elements in the AtALMT1 promoter that interact with transcription factors. In planta complementation assays of AtALMT1 driven by 5' truncated promoters of different lengths showed that the promoter region between -540 and 0 (the first ATG) restored the Al-sensitive phenotype of atalm1 and thus contains cis-elements essential for AtALMT1 expression for Al tolerance. Computation of overrepresented octamers showed that eight regions in this promoter region contained potential cis-elements involved in Al induction and STOP1 regulation. Mutation in a position around -297 from the first ATG completely inactivated AtALMT1 expression and Al response. In vitro binding assays showed that this region contained the STOP1 binding site, which accounted for the recognition by four zinc finger domains of the protein. Other positions were characterized as cis-elements that regulated expression by repressors and activators and a transcription factor that determines root tip expression of AtALMT1. From the consensus of known cis-elements, we identified CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR2 to be an activator of AtALMT1 expression. Al-inducible expression of AtALMT1 changed transcription starting sites, which increased the abundance of transcripts with a shortened 5' untranslated region. The present analyses identified multiple mechanisms that regulate AtALMT1 expression.
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Affiliation(s)
- Mutsutomo Tokizawa
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Yuriko Kobayashi
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Tatsunori Saito
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Masatomo Kobayashi
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Satoshi Iuchi
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Mika Nomoto
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Yasuomi Tada
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Yoshiharu Y Yamamoto
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Hiroyuki Koyama
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
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291
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De Coninck B, Timmermans P, Vos C, Cammue BPA, Kazan K. What lies beneath: belowground defense strategies in plants. TRENDS IN PLANT SCIENCE 2015; 20:91-101. [PMID: 25307784 DOI: 10.1016/j.tplants.2014.09.007] [Citation(s) in RCA: 112] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2014] [Revised: 09/12/2014] [Accepted: 09/16/2014] [Indexed: 05/17/2023]
Abstract
Diseases caused by soil-borne pathogens result worldwide in significant yield losses in economically important crops. In contrast to foliar diseases, relatively little is known about the nature of root defenses against these pathogens. This review summarizes the current knowledge on root infection strategies, root-specific preformed barriers, pathogen recognition, and defense signaling. Studies reviewed here suggest that many commonalities as well as differences exist in defense strategies employed by roots and foliar tissues during pathogen attack. Importantly, in addition to pathogens, plant roots interact with a plethora of non-pathogenic and symbiotic microorganisms. Therefore, a good understanding of how plant roots interact with the microbiome would be particularly important to engineer resistance to root pathogens without negatively altering root-beneficial microbe interactions.
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Affiliation(s)
- Barbara De Coninck
- Centre of Microbial and Plant Genetics, Katholieke Universiteit (KU) Leuven, Kasteelpark Arenberg 20, 3001 Heverlee, Belgium; Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Gent, Belgium
| | - Pieter Timmermans
- Centre of Microbial and Plant Genetics, Katholieke Universiteit (KU) Leuven, Kasteelpark Arenberg 20, 3001 Heverlee, Belgium
| | - Christine Vos
- Centre of Microbial and Plant Genetics, Katholieke Universiteit (KU) Leuven, Kasteelpark Arenberg 20, 3001 Heverlee, Belgium; Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Gent, Belgium
| | - Bruno P A Cammue
- Centre of Microbial and Plant Genetics, Katholieke Universiteit (KU) Leuven, Kasteelpark Arenberg 20, 3001 Heverlee, Belgium; Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, 9052 Gent, Belgium.
| | - Kemal Kazan
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Agriculture Flagship, Queensland Bioscience Precinct, Brisbane, Queensland, 4067, Australia; Queensland Alliance for Agriculture & Food Innovation (QAAFI), The University of Queensland, St Lucia, Brisbane, Queensland 4067, Australia
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292
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Xiao C, Wu M, Chen Y, Zhang Y, Zhao X, Zheng X. Revealing metabolomic variations in Cortex Moutan from different root parts using HPLC-MS method. PHYTOCHEMICAL ANALYSIS : PCA 2015; 26:86-93. [PMID: 25230378 DOI: 10.1002/pca.2539] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2014] [Revised: 07/25/2014] [Accepted: 08/03/2014] [Indexed: 06/03/2023]
Abstract
INTRODUCTION The distribution of metabolites in the different root parts of Cortex Moutan (the root bark of Paeonia suffruticosa Andrews) is not well understood, therefore, scientific evidence is not available for quality assessment of Cortex Moutan. OBJECTIVE To reveal metabolomic variations in Cortex Moutan in order to gain deeper insights to enable quality control. METHODS Metabolomic variations in the different root parts of Cortex Moutan were characterised using high-performance liquid chromatography combined with mass spectrometry (HPLC-MS) and multivariate data analysis. The discriminating metabolites in different root parts were evaluated by the one-way analysis of variance and a fold change parameter. RESULTS The metabolite profiles of Cortex Moutan were largely dominated by five primary and 41 secondary metabolites . Higher levels of malic acid, gallic acid and mudanoside-B were mainly observed in the second lateral roots, whereas dihydroxyacetophenone, benzoyloxypaeoniflorin, suffruticoside-A, kaempferol dihexoside, mudanpioside E and mudanpioside J accumulated in the first lateral and axial roots. The highest contents of paeonol, galloyloxypaeoniflorin and procyanidin B were detected in the axial roots. Accordingly, metabolite compositions of Cortex Moutan were found to vary among different root parts. CONCLUSION The axial roots have higher quality than the lateral roots in Cortex Moutan due to the accumulation of bioactive secondary metabolites associated with plant physiology. These findings provided important scientific evidence for grading Cortex Moutan on the general market.
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Affiliation(s)
- Chaoni Xiao
- College of Life Sciences, Northwest University, Xi'an, 710069, China
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293
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Du J, Hu X, Mu L, Ouyang S, Ren C, Du Y, Zhou Q. Root exudates as natural ligands that alter the properties of graphene oxide and environmental implications thereof. RSC Adv 2015. [DOI: 10.1039/c4ra16340k] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Root exudates as natural ligands that alter the property of graphene oxide and environmental implications.
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Affiliation(s)
- Junjie Du
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)
- Tianjin Key Laboratory of Environmental Remediation and Pollution Control
- College of Environmental Science and Engineering
- Nankai University
- Tianjin 300071
| | - Xiangang Hu
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)
- Tianjin Key Laboratory of Environmental Remediation and Pollution Control
- College of Environmental Science and Engineering
- Nankai University
- Tianjin 300071
| | - Li Mu
- Institute of Agro-environmental Protection
- Ministry of Agriculture
- Tianjin 300191
- China
| | - Shaohu Ouyang
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)
- Tianjin Key Laboratory of Environmental Remediation and Pollution Control
- College of Environmental Science and Engineering
- Nankai University
- Tianjin 300071
| | - Chaoxiu Ren
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)
- Tianjin Key Laboratory of Environmental Remediation and Pollution Control
- College of Environmental Science and Engineering
- Nankai University
- Tianjin 300071
| | - Yingda Du
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)
- Tianjin Key Laboratory of Environmental Remediation and Pollution Control
- College of Environmental Science and Engineering
- Nankai University
- Tianjin 300071
| | - Qixing Zhou
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)
- Tianjin Key Laboratory of Environmental Remediation and Pollution Control
- College of Environmental Science and Engineering
- Nankai University
- Tianjin 300071
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294
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Strehmel N, Böttcher C, Schmidt S, Scheel D. Profiling of secondary metabolites in root exudates of Arabidopsis thaliana. PHYTOCHEMISTRY 2014; 108:35-46. [PMID: 25457500 DOI: 10.1016/j.phytochem.2014.10.003] [Citation(s) in RCA: 125] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Revised: 10/01/2014] [Accepted: 10/08/2014] [Indexed: 05/20/2023]
Abstract
To explore the chemical composition of root exudates of the model plant Arabidopsis thaliana a workflow for nontargeted metabolite profiling of the semipolar fraction of root exudates was developed. It comprises hydroponic plant cultivation and sampling of root exudates under sterile conditions, sample preparation by solid-phase extraction and analysis by reversed-phase UPLC/ESI-QTOFMS. Following the established workflow, root exudates of six-week-old plants were profiled and a set of reproducibly occurring molecular features was compiled. To structurally elucidate the corresponding metabolites, accurate mass tandem mass spectrometry and on-line hydrogen/deuterium exchange were applied. Currently, a total of 103 compounds were detected and annotated by elemental composition of which more than 90 were structurally characterized or classified. Among them, 42 compounds were rigorously identified using an authenticated standard. The compounds identified so far include nucleosides, deoxynucleosides, aromatic amino acids, anabolites and catabolites of glucosinolates, dipeptides, indolics, salicylic and jasmonic acid catabolites, coumarins, mono-, di- and trilignols, hydroxycinnamic acid derivatives and oxylipins and exemplify the high chemical diversity of plant root exudates.
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295
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Kia SH, Schulz M, Ayah E, Schouten A, Müllenborn C, Paetz C, Schneider B, Hofmann D, Disko U, Tabaglio V, Marocco A. Abutilon theophrasti’s Defense Against the Allelochemical Benzoxazolin-2(3H)-One: Support by Actinomucor elegans. J Chem Ecol 2014; 40:1286-98. [DOI: 10.1007/s10886-014-0529-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Revised: 11/02/2014] [Accepted: 11/06/2014] [Indexed: 01/06/2023]
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296
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Kleine S, Müller C. Drought Stress and Leaf Herbivory Affect Root Terpenoid Concentrations and Growth of Tanacetum vulgare. J Chem Ecol 2014; 40:1115-25. [DOI: 10.1007/s10886-014-0505-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2014] [Revised: 07/23/2014] [Accepted: 08/26/2014] [Indexed: 11/28/2022]
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297
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Haichar FEZ, Santaella C, Heulin T, Achouak W. Root exudates mediated interactions belowground. SOIL BIOLOGY AND BIOCHEMISTRY 2014; 77:69-80. [PMID: 0 DOI: 10.1016/j.soilbio.2014.06.017] [Citation(s) in RCA: 300] [Impact Index Per Article: 30.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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