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For: Aksimentiev A, Schulten K. Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map. Biophys J 2005;88:3745-61. [PMID: 15764651 PMCID: PMC1305609 DOI: 10.1529/biophysj.104.058727] [Citation(s) in RCA: 496] [Impact Index Per Article: 26.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2004] [Accepted: 02/08/2005] [Indexed: 01/28/2023]  Open
Number Cited by Other Article(s)
301
Gamble T, Decker K, Plett T, Pevarnik M, Pietschmann JF, Vlassiouk I, Aksimentiev A, Siwy ZS. Rectification of Ion Current in Nanopores Depends on the Type of Monovalent Cations: Experiments and Modeling. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2014;118:9809-9819. [PMID: 25678940 PMCID: PMC4317049 DOI: 10.1021/jp501492g] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2014] [Revised: 03/24/2014] [Indexed: 05/04/2023]
302
Martin HSC, Jha S, Coveney PV. Comparative analysis of nucleotide translocation through protein nanopores using steered molecular dynamics and an adaptive biasing force. J Comput Chem 2014;35:692-702. [PMID: 24403093 PMCID: PMC4274958 DOI: 10.1002/jcc.23525] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2013] [Revised: 11/13/2013] [Accepted: 12/07/2013] [Indexed: 12/17/2022]
303
Adelman JL, Sheng Y, Choe S, Abramson J, Wright EM, Rosenberg JM, Grabe M. Structural determinants of water permeation through the sodium-galactose transporter vSGLT. Biophys J 2014;106:1280-9. [PMID: 24655503 PMCID: PMC3984995 DOI: 10.1016/j.bpj.2014.01.006] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2013] [Revised: 12/19/2013] [Accepted: 01/02/2014] [Indexed: 01/26/2023]  Open
304
Laghaei R, Kowallis W, Evans DG, Coalson RD. Calculation of Iron Transport through Human H-chain Ferritin. J Phys Chem A 2014;118:7442-53. [DOI: 10.1021/jp500198u] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
305
Chaudhry JH, Comer J, Aksimentiev A, Olson LN. A Stabilized Finite Element Method for Modified Poisson-Nernst-Planck Equations to Determine Ion Flow Through a Nanopore. COMMUNICATIONS IN COMPUTATIONAL PHYSICS 2014;15:10.4208/cicp.101112.100413a. [PMID: 24363784 PMCID: PMC3867981 DOI: 10.4208/cicp.101112.100413a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
306
A Microscopic View of the Mechanisms of Active Transport Across the Cellular Membrane. ANNUAL REPORTS IN COMPUTATIONAL CHEMISTRY 2014. [DOI: 10.1016/b978-0-444-63378-1.00004-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
307
Noskov SY, Rostovtseva TK, Bezrukov SM. ATP transport through VDAC and the VDAC-tubulin complex probed by equilibrium and nonequilibrium MD simulations. Biochemistry 2013;52:9246-56. [PMID: 24245503 PMCID: PMC7259721 DOI: 10.1021/bi4011495] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
308
Larkin J, Henley R, Bell DC, Cohen-Karni T, Rosenstein JK, Wanunu M. Slow DNA transport through nanopores in hafnium oxide membranes. ACS NANO 2013;7:10121-10128. [PMID: 24083444 PMCID: PMC4729694 DOI: 10.1021/nn404326f] [Citation(s) in RCA: 139] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
309
He Z, Zhou J, Lu X, Corry B. Bioinspired graphene nanopores with voltage-tunable ion selectivity for Na(+) and K(+). ACS NANO 2013;7:10148-10157. [PMID: 24151957 DOI: 10.1021/nn4043628] [Citation(s) in RCA: 128] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
310
Lu J, Modi N, Kleinekathöfer U. Simulation of Ion Transport through an N-Acetylneuraminic Acid-Inducible Membrane Channel: From Understanding to Engineering. J Phys Chem B 2013;117:15966-75. [DOI: 10.1021/jp408495v] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
311
Harb F, Tinland B. Electric migration of α-hemolysin in supported n-bilayers: a model for transmembrane protein microelectrophoresis. Electrophoresis 2013;34:3054-63. [PMID: 23925931 DOI: 10.1002/elps.201300202] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2013] [Revised: 06/26/2013] [Accepted: 07/12/2013] [Indexed: 11/06/2022]
312
Zoonens M, Comer J, Masscheleyn S, Pebay-Peyroula E, Chipot C, Miroux B, Dehez F. Dangerous liaisons between detergents and membrane proteins. The case of mitochondrial uncoupling protein 2. J Am Chem Soc 2013;135:15174-82. [PMID: 24021091 DOI: 10.1021/ja407424v] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
313
Dyrka W, Bartuzel MM, Kotulska M. Optimization of 3D Poisson-Nernst-Planck model for fast evaluation of diverse protein channels. Proteins 2013;81:1802-22. [PMID: 23720356 DOI: 10.1002/prot.24326] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2012] [Revised: 05/02/2013] [Accepted: 05/09/2013] [Indexed: 12/12/2022]
314
Buchsbaum SF, Mitchell N, Martin H, Wiggin M, Marziali A, Coveney PV, Siwy Z, Howorka S. Disentangling steric and electrostatic factors in nanoscale transport through confined space. NANO LETTERS 2013;13:3890-3896. [PMID: 23819625 DOI: 10.1021/nl401968r] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
315
Modi N, Bárcena-Uribarri I, Bains M, Benz R, Hancock REW, Kleinekathöfer U. Role of the central arginine R133 toward the ion selectivity of the phosphate specific channel OprP: effects of charge and solvation. Biochemistry 2013;52:5522-32. [PMID: 23875754 DOI: 10.1021/bi400522b] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
316
Liu Y, Zhu F. Collective diffusion model for ion conduction through microscopic channels. Biophys J 2013;104:368-76. [PMID: 23442858 DOI: 10.1016/j.bpj.2012.11.3826] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2012] [Revised: 11/21/2012] [Accepted: 11/29/2012] [Indexed: 10/27/2022]  Open
317
Pöyry S, Cramariuc O, Postila PA, Kaszuba K, Sarewicz M, Osyczka A, Vattulainen I, Róg T. Atomistic simulations indicate cardiolipin to have an integral role in the structure of the cytochrome bc1 complex. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2013;1827:769-78. [DOI: 10.1016/j.bbabio.2013.03.005] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Revised: 03/05/2013] [Accepted: 03/13/2013] [Indexed: 10/27/2022]
318
Reiner JE, Balijepalli A, Robertson JWF, Drown BS, Burden DL, Kasianowicz JJ. The effects of diffusion on an exonuclease/nanopore-based DNA sequencing engine. J Chem Phys 2013;137:214903. [PMID: 23231259 DOI: 10.1063/1.4766363] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
319
Tian K, He Z, Wang Y, Chen SJ, Gu LQ. Designing a polycationic probe for simultaneous enrichment and detection of microRNAs in a nanopore. ACS NANO 2013;7:3962-9. [PMID: 23550815 PMCID: PMC3675772 DOI: 10.1021/nn305789z] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
320
Balijepalli A, Robertson JWF, Reiner JE, Kasianowicz JJ, Pastor RW. Theory of polymer-nanopore interactions refined using molecular dynamics simulations. J Am Chem Soc 2013;135:7064-72. [PMID: 23590258 DOI: 10.1021/ja4026193] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
321
Piguet F, Foster DP. Translocation of short and long polymers through an interacting pore. J Chem Phys 2013;138:084902. [DOI: 10.1063/1.4792716] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
322
Stock L, Souza C, Treptow W. Structural Basis for Activation of Voltage-Gated Cation Channels. Biochemistry 2013;52:1501-13. [DOI: 10.1021/bi3013017] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
323
Caballero J, Poblete H, Navarro C, Alzate-Morales JH. Association of nicotinic acid with a poly(amidoamine) dendrimer studied by molecular dynamics simulations. J Mol Graph Model 2013;39:71-8. [DOI: 10.1016/j.jmgm.2012.11.003] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2012] [Revised: 11/08/2012] [Accepted: 11/08/2012] [Indexed: 11/16/2022]
324
Dong J, Qiu J, Zhang Y, Lu C, Dai X, Wang J, Li H, Wang X, Tan W, Luo M, Niu X, Deng X. Oroxylin A inhibits hemolysis via hindering the self-assembly of α-hemolysin heptameric transmembrane pore. PLoS Comput Biol 2013;9:e1002869. [PMID: 23349625 PMCID: PMC3547825 DOI: 10.1371/journal.pcbi.1002869] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2012] [Accepted: 11/16/2012] [Indexed: 02/06/2023]  Open
325
Niu X, Qiu J, Wang X, Gao X, Dong J, Wang J, Li H, Zhang Y, Dai X, Lu C, Deng X. Molecular insight into the inhibition mechanism of cyrtominetin to α-hemolysin by molecular dynamics simulation. Eur J Med Chem 2013;62:320-8. [PMID: 23376250 DOI: 10.1016/j.ejmech.2013.01.008] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2012] [Revised: 01/04/2013] [Accepted: 01/08/2013] [Indexed: 11/16/2022]
326
Göpfrich K, Kulkarni CV, Pambos OJ, Keyser UF. Lipid nanobilayers to host biological nanopores for DNA translocations. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013;29:355-364. [PMID: 23214950 DOI: 10.1021/la3041506] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
327
Singh PR, Bárcena-Uribarri I, Modi N, Kleinekathöfer U, Benz R, Winterhalter M, Mahendran KR. Pulling peptides across nanochannels: resolving peptide binding and translocation through the hetero-oligomeric channel from Nocardia farcinica. ACS NANO 2012;6:10699-10707. [PMID: 23121560 DOI: 10.1021/nn303900y] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
328
Maffeo C, Bhattacharya S, Yoo J, Wells D, Aksimentiev A. Modeling and simulation of ion channels. Chem Rev 2012;112:6250-84. [PMID: 23035940 PMCID: PMC3633640 DOI: 10.1021/cr3002609] [Citation(s) in RCA: 148] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
329
Mereuta L, Schiopu I, Asandei A, Park Y, Hahm KS, Luchian T. Protein nanopore-based, single-molecule exploration of copper binding to an antimicrobial-derived, histidine-containing chimera peptide. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012;28:17079-17091. [PMID: 23140333 DOI: 10.1021/la303782d] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
330
Modi N, Benz R, Hancock REW, Kleinekathöfer U. Modeling the Ion Selectivity of the Phosphate Specific Channel OprP. J Phys Chem Lett 2012;3:3639-3645. [PMID: 26290999 DOI: 10.1021/jz301637d] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
331
Comer J, Ho A, Aksimentiev A. Toward detection of DNA-bound proteins using solid-state nanopores: insights from computer simulations. Electrophoresis 2012;33:3466-79. [PMID: 23147918 PMCID: PMC3789251 DOI: 10.1002/elps.201200164] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2012] [Revised: 07/05/2012] [Accepted: 07/09/2012] [Indexed: 11/07/2022]
332
Langecker M, Arnaut V, Martin TG, List J, Renner S, Mayer M, Dietz H, Simmel FC. Synthetic lipid membrane channels formed by designed DNA nanostructures. Science 2012;338:932-6. [PMID: 23161995 DOI: 10.1126/science.1225624] [Citation(s) in RCA: 566] [Impact Index Per Article: 47.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
333
Ando G, Hyun C, Li J, Mitsui T. Directly observing the motion of DNA molecules near solid-state nanopores. ACS NANO 2012;6:10090-7. [PMID: 23046052 PMCID: PMC3508321 DOI: 10.1021/nn303816w] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
334
Niedzwiecki D, Mohammad M, Movileanu L. Inspection of the engineered FhuA ΔC/Δ4L protein nanopore by polymer exclusion. Biophys J 2012;103:2115-24. [PMID: 23200045 PMCID: PMC3512039 DOI: 10.1016/j.bpj.2012.10.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2012] [Revised: 10/03/2012] [Accepted: 10/10/2012] [Indexed: 12/11/2022]  Open
335
Reiner JE, Balijepalli A, Robertson JWF, Campbell J, Suehle J, Kasianowicz JJ. Disease Detection and Management via Single Nanopore-Based Sensors. Chem Rev 2012;112:6431-51. [DOI: 10.1021/cr300381m] [Citation(s) in RCA: 195] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
336
Robertson JWF, Kasianowicz JJ, Banerjee S. Analytical Approaches for Studying Transporters, Channels and Porins. Chem Rev 2012;112:6227-49. [DOI: 10.1021/cr300317z] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
337
Campos E, Asandei A, McVey CE, Dias JC, Oliveira ASF, Soares CM, Luchian T, Astier Y. The role of Lys147 in the interaction between MPSA-gold nanoparticles and the α-hemolysin nanopore. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012;28:15643-15650. [PMID: 23046444 DOI: 10.1021/la302613g] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
338
Harb F, Sarkis J, Ferte N, Tinland B. Beyond Saffman-Delbruck approximation: a new regime for 2D diffusion of α-hemolysin complexes in supported lipid bilayer. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2012;35:118. [PMID: 23160766 DOI: 10.1140/epje/i2012-12118-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2012] [Revised: 09/10/2012] [Accepted: 10/11/2012] [Indexed: 06/01/2023]
339
Hu G, Mao M, Ghosal S. Ion transport through a graphene nanopore. NANOTECHNOLOGY 2012;23:395501. [PMID: 22962262 PMCID: PMC3446844 DOI: 10.1088/0957-4484/23/39/395501] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
340
Jensen MØ, Jogini V, Borhani DW, Leffler AE, Dror RO, Shaw DE. Mechanism of voltage gating in potassium channels. Science 2012;336:229-33. [PMID: 22499946 DOI: 10.1126/science.1216533] [Citation(s) in RCA: 433] [Impact Index Per Article: 36.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
341
Bhattacharya S, Derrington IM, Pavlenok M, Niederweis M, Gundlach JH, Aksimentiev A. Molecular dynamics study of MspA arginine mutants predicts slow DNA translocations and ion current blockades indicative of DNA sequence. ACS NANO 2012;6:6960-8. [PMID: 22747101 PMCID: PMC3448955 DOI: 10.1021/nn3019943] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
342
Luan B, Zhou R. Nanopore-Based Sensors for Detecting Toxicity of a Carbon Nanotube to Proteins. J Phys Chem Lett 2012;2012:2337-2341. [PMID: 23002420 PMCID: PMC3445412 DOI: 10.1021/jz3007832] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
343
Kasianowicz JJ, Reiner JE, Robertson JWF, Henrickson SE, Rodrigues C, Krasilnikov OV. Detecting and characterizing individual molecules with single nanopores. Methods Mol Biol 2012;870:3-20. [PMID: 22528255 DOI: 10.1007/978-1-61779-773-6_1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
344
Ravaud S, Bidon-Chanal A, Blesneac I, Machillot P, Juillan-Binard C, Dehez F, Chipot C, Pebay-Peyroula E. Impaired transport of nucleotides in a mitochondrial carrier explains severe human genetic diseases. ACS Chem Biol 2012;7:1164-9. [PMID: 22497660 DOI: 10.1021/cb300012j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
345
Wong-Ekkabut J, Karttunen M. Assessment of Common Simulation Protocols for Simulations of Nanopores, Membrane Proteins, and Channels. J Chem Theory Comput 2012;8:2905-11. [PMID: 26592129 DOI: 10.1021/ct3001359] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
346
De Biase P, Solano CJF, Markosyan S, Czapla L, Noskov SY. BROMOC-D: Brownian Dynamics/Monte-Carlo Program Suite to Study Ion and DNA Permeation in Nanopores. J Chem Theory Comput 2012;8:2540-2551. [PMID: 22798730 PMCID: PMC3396124 DOI: 10.1021/ct3004244] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2012] [Indexed: 11/29/2022]
347
Musgaard M, Thøgersen L, Schiøtt B, Tajkhorshid E. Tracing cytoplasmic Ca(2+) ion and water access points in the Ca(2+)-ATPase. Biophys J 2012;102:268-77. [PMID: 22339863 DOI: 10.1016/j.bpj.2011.12.009] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2011] [Revised: 11/17/2011] [Accepted: 12/05/2011] [Indexed: 11/28/2022]  Open
348
Molecular Dynamics Simulations of Lipid Membrane Electroporation. J Membr Biol 2012;245:531-43. [DOI: 10.1007/s00232-012-9434-6] [Citation(s) in RCA: 101] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Accepted: 04/30/2012] [Indexed: 10/28/2022]
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Dayani Y, Malmstadt N. Lipid bilayers covalently anchored to carbon nanotubes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012;28:8174-8182. [PMID: 22568448 PMCID: PMC3378680 DOI: 10.1021/la301094h] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
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Delemotte L, Klein ML, Tarek M. Molecular dynamics simulations of voltage-gated cation channels: insights on voltage-sensor domain function and modulation. Front Pharmacol 2012;3:97. [PMID: 22654756 PMCID: PMC3361024 DOI: 10.3389/fphar.2012.00097] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Accepted: 05/01/2012] [Indexed: 11/26/2022]  Open
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