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Abstract
Fluctuations in the temporal durations of sensory signals constitute a major source of variability within natural stimulus ensembles. The neuronal mechanisms through which sensory systems can stabilize perception against such fluctuations are largely unknown. An intriguing instantiation of such robustness occurs in human speech perception, which relies critically on temporal acoustic cues that are embedded in signals with highly variable duration. Across different instances of natural speech, auditory cues can undergo temporal warping that ranges from 2-fold compression to 2-fold dilation without significant perceptual impairment. Here, we report that time-warp-invariant neuronal processing can be subserved by the shunting action of synaptic conductances that automatically rescales the effective integration time of postsynaptic neurons. We propose a novel spike-based learning rule for synaptic conductances that adjusts the degree of synaptic shunting to the temporal processing requirements of a given task. Applying this general biophysical mechanism to the example of speech processing, we propose a neuronal network model for time-warp-invariant word discrimination and demonstrate its excellent performance on a standard benchmark speech-recognition task. Our results demonstrate the important functional role of synaptic conductances in spike-based neuronal information processing and learning. The biophysics of temporal integration at neuronal membranes can endow sensory pathways with powerful time-warp-invariant computational capabilities.
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Affiliation(s)
- Robert Gütig
- Racah Institute of Physics, Hebrew University, Jerusalem, Israel.
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352
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Leon M, Johnson BA. Is there a space-time continuum in olfaction? Cell Mol Life Sci 2009; 66:2135-50. [PMID: 19294334 PMCID: PMC2705728 DOI: 10.1007/s00018-009-0011-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2008] [Revised: 02/18/2009] [Accepted: 02/23/2009] [Indexed: 11/22/2022]
Abstract
The coding of olfactory stimuli across a wide range of organisms may rely on fundamentally similar mechanisms in which a complement of specific odorant receptors on olfactory sensory neurons respond differentially to airborne chemicals to initiate the process by which specific odors are perceived. The question that we address in this review is the role of specific neurons in mediating this sensory system--an identity code--relative to the role that temporally specific responses across many neurons play in producing an olfactory perception--a temporal code. While information coded in specific neurons may be converted into a temporal code, it is also possible that temporal codes exist in the absence of response specificity for any particular neuron or subset of neurons. We review the data supporting these ideas, and we discuss the research perspectives that could help to reveal the mechanisms by which odorants become perceptions.
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Affiliation(s)
- Michael Leon
- Department of Neurobiology and Behavior, University of California Irvine, Irvine, CA 92697-4550, USA.
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353
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Petersen RS, Panzeri S, Maravall M. Neural coding and contextual influences in the whisker system. BIOLOGICAL CYBERNETICS 2009; 100:427-446. [PMID: 19189120 DOI: 10.1007/s00422-008-0290-5] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2008] [Accepted: 12/18/2008] [Indexed: 05/27/2023]
Abstract
A fundamental problem in neuroscience, to which Prof. Segundo has made seminal contributions, is to understand how action potentials represent events in the external world. The aim of this paper is to review the issue of neural coding in the context of the rodent whiskers, an increasingly popular model system. Key issues we consider are: the role of spike timing; mechanisms of spike timing; decoding and context-dependence. Significant insight has come from the development of rigorous, information theoretic frameworks for tackling these questions, in conjunction with suitably designed experiments. We review both the theory and experimental studies. In contrast to the classical view that neurons are noisy and unreliable, it is becoming clear that many neurons in the subcortical whisker pathway are remarkably reliable and, by virtue of spike timing with millisecond-precision, have high bandwidth for conveying sensory information. In this way, even small (approximately 200 neuron) subcortical modules are able to support the sensory processing underlying sophisticated whisker-dependent behaviours. Future work on neural coding in cortex will need to consider new findings that responses are highly dependent on context, including behavioural and internal states.
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354
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Abstract
The function of the retina is crucial, for it must encode visual signals so the brain can detect objects in the visual world. However, the biological mechanisms of the retina add noise to the visual signal and therefore reduce its quality and capacity to inform about the world. Because an organism's survival depends on its ability to unambiguously detect visual stimuli in the presence of noise, its retinal circuits must have evolved to maximize signal quality, suggesting that each retinal circuit has a specific functional role. Here we explain how an ideal observer can measure signal quality to determine the functional roles of retinal circuits. In a visual discrimination task the ideal observer can measure from a neural response the increment threshold, the number of distinguishable response levels, and the neural code, which are fundamental measures of signal quality relevant to behavior. It can compare the signal quality in stimulus and response to determine the optimal stimulus, and can measure the specific loss of signal quality by a neuron's receptive field for non-optimal stimuli. Taking into account noise correlations, the ideal observer can track the signal-to-noise ratio available from one stage to the next, allowing one to determine each stage's role in preserving signal quality. A comparison between the ideal performance of the photon flux absorbed from the stimulus and actual performance of a retinal ganglion cell shows that in daylight a ganglion cell and its presynaptic circuit loses a factor of approximately 10-fold in contrast sensitivity, suggesting specific signal-processing roles for synaptic connections and other neural circuit elements. The ideal observer is a powerful tool for characterizing signal processing in single neurons and arrays along a neural pathway.
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Affiliation(s)
- Robert G Smith
- Department of Neuroscience, University of Pennsylvania, Philadelphia, PA 19104-6058, USA.
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355
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Foffani G, Morales-Botello ML, Aguilar J. Spike timing, spike count, and temporal information for the discrimination of tactile stimuli in the rat ventrobasal complex. J Neurosci 2009; 29:5964-73. [PMID: 19420262 PMCID: PMC6665236 DOI: 10.1523/jneurosci.4416-08.2009] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2008] [Revised: 03/28/2009] [Accepted: 04/05/2009] [Indexed: 11/21/2022] Open
Abstract
The aim of this work was to investigate the role of spike timing for the discrimination of tactile stimuli in the thalamic ventrobasal complex of the rat. We applied information-theoretic measures and computational experiments on neurophysiological data to test the ability of single-neuron responses to discriminate stimulus location and stimulus dynamics using either spike count (40 ms bin size) or spike timing (1 ms bin size). Our main finding is not only that spike timing provides additional information over spike count alone, but specifically that the temporal aspects of the code can be more informative than spike count in the rat ventrobasal complex. Virtually all temporal information--i.e., information exclusively related to when the spikes occur--is conveyed by first spikes, arising mostly from latency differences between the responses to different stimuli. Although the imprecision of first spikes (i.e., the jitter) is highly detrimental for the information conveyed by latency differences, jitter differences can contribute to temporal information, but only if latency differences are close to zero. We conclude that temporal information conveyed by spike timing can be higher than spike count information for the discrimination of somatosensory stimuli in the rat ventrobasal complex.
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Affiliation(s)
- G Foffani
- Neurosignals Group, Hospital Nacional de Parapléjicos, Servicio de Salud de Castilla-La Mancha, Toledo 45071, Spain.
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356
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Predictive feedback can account for biphasic responses in the lateral geniculate nucleus. PLoS Comput Biol 2009; 5:e1000373. [PMID: 19412529 PMCID: PMC2670540 DOI: 10.1371/journal.pcbi.1000373] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2008] [Accepted: 03/24/2009] [Indexed: 11/19/2022] Open
Abstract
Biphasic neural response properties, where the optimal stimulus for driving a
neural response changes from one stimulus pattern to the opposite stimulus
pattern over short periods of time, have been described in several visual areas,
including lateral geniculate nucleus (LGN), primary visual cortex (V1), and
middle temporal area (MT). We describe a hierarchical model of predictive coding
and simulations that capture these temporal variations in neuronal response
properties. We focus on the LGN-V1 circuit and find that after training on
natural images the model exhibits the brain's LGN-V1 connectivity
structure, in which the structure of V1 receptive fields is linked to the
spatial alignment and properties of center-surround cells in the LGN. In
addition, the spatio-temporal response profile of LGN model neurons is biphasic
in structure, resembling the biphasic response structure of neurons in cat LGN.
Moreover, the model displays a specific pattern of influence of feedback, where
LGN receptive fields that are aligned over a simple cell receptive field zone of
the same polarity decrease their responses while neurons of opposite polarity
increase their responses with feedback. This phase-reversed pattern of influence
was recently observed in neurophysiology. These results corroborate the idea
that predictive feedback is a general coding strategy in the brain. For many neurons in the early visual brain the optimal stimulation for driving a
response changes from one stimulus pattern to the opposite stimulus pattern over
short periods of time. For example, many neurons in the lateral geniculate
nucleus (LGN) respond to a bright stimulus initially but prefer a dark stimulus
only 20 milliseconds later in time, and similar changes in response preference
have been found for neurons in other areas. What would be the computational
reason for these biphasic response dynamics? We describe a hierarchical model of
predictive coding that explains these response properties. In the model,
higher-level neurons attempt to predict their lower-level input, while
lower-level neurons signal the difference between actual input and the
higher-level predictions. In our simulations we focus on the LGN and area V1 and
find that after training on natural images the layout of model connections
resembles the brain's LGN-V1 connectivity structure. In addition, the
responses of model LGN neurons are biphasic in time, resembling biphasic
responses as found in neurophysiology. Moreover, the model displays a specific
pattern of influence of feedback from higher-level areas that was recently
observed in neurophysiology. These results corroborate the idea that predictive
feedback is a general coding strategy in the brain.
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357
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Fields RD. Oligodendrocytes changing the rules: action potentials in glia and oligodendrocytes controlling action potentials. Neuroscientist 2009; 14:540-3. [PMID: 19029057 DOI: 10.1177/1073858408320294] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Two long-standing rules in cellular neuroscience must now be amended with the publication of two studies on myelin-forming glia in the CNS: 1) Neurons can no longer be considered the only cells that fire electric impulses in the brain. 2) Synapses between neurons are not the only way electrical information is regulated as it propagates through neural circuits: oligodendrocytes can cause rapid activity-dependent changes in spike latency. A category of oligodendrocyte precursor cells (OPCs) has been identified that can fire action potentials, and their excitation is driven by synapses from axons. This finding has relevance to excitotoxicity in ischemia, but the normal function may be to regulate myelination according to functional activity in axons. A second study reveals that action potential propagation through CNS axons can be rapidly regulated by oligodendrocytes. Mature oligodendrocytes in the rat hippocampus are depolarized by theta burst stimulation of axons, and when the oligodendrocytes are depolarized by current injection in paired whole-cell recordings with CA1 pyramidal neurons, the latency of impulse conduction through the axons it ensheathes rapidly decreases. This unprecedented finding suggests a dynamic role for myelin in regulating impulse transmission through axons, promoting neural synchrony among the multiple axons under the domain of an individual oligodendrocyte.
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Affiliation(s)
- R Douglas Fields
- Nervous System Development and Plasticity Section, National Institutes of Health, Bethesda, MD 20892, USA.
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358
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Koepsell K, Wang X, Vaingankar V, Wei Y, Wang Q, Rathbun DL, Usrey WM, Hirsch JA, Sommer FT. Retinal oscillations carry visual information to cortex. Front Syst Neurosci 2009; 3:4. [PMID: 19404487 PMCID: PMC2674373 DOI: 10.3389/neuro.06.004.2009] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2008] [Accepted: 03/18/2009] [Indexed: 11/30/2022] Open
Abstract
Thalamic relay cells fire action potentials that transmit information from retina to cortex. The amount of information that spike trains encode is usually estimated from the precision of spike timing with respect to the stimulus. Sensory input, however, is only one factor that influences neural activity. For example, intrinsic dynamics, such as oscillations of networks of neurons, also modulate firing pattern. Here, we asked if retinal oscillations might help to convey information to neurons downstream. Specifically, we made whole-cell recordings from relay cells to reveal retinal inputs (EPSPs) and thalamic outputs (spikes) and then analyzed these events with information theory. Our results show that thalamic spike trains operate as two multiplexed channels. One channel, which occupies a low frequency band (<30 Hz), is encoded by average firing rate with respect to the stimulus and carries information about local changes in the visual field over time. The other operates in the gamma frequency band (40–80 Hz) and is encoded by spike timing relative to retinal oscillations. At times, the second channel conveyed even more information than the first. Because retinal oscillations involve extensive networks of ganglion cells, it is likely that the second channel transmits information about global features of the visual scene.
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Affiliation(s)
- Kilian Koepsell
- Redwood Center for Theoretical Neuroscience, University of California Berkeley CA, USA
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359
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Johansson RS, Flanagan JR. Coding and use of tactile signals from the fingertips in object manipulation tasks. Nat Rev Neurosci 2009; 10:345-59. [PMID: 19352402 DOI: 10.1038/nrn2621] [Citation(s) in RCA: 836] [Impact Index Per Article: 55.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
During object manipulation tasks, the brain selects and implements action-phase controllers that use sensory predictions and afferent signals to tailor motor output to the physical properties of the objects involved. Analysis of signals in tactile afferent neurons and central processes in humans reveals how contact events are encoded and used to monitor and update task performance.
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Affiliation(s)
- Roland S Johansson
- Physiology Section, Department of Integrative Medical Biology, Umeå University, SE-901 87 Umeå, Sweden.
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360
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Paik SB, Kumar T, Glaser DA. Spontaneous local gamma oscillation selectively enhances neural network responsiveness. PLoS Comput Biol 2009; 5:e1000342. [PMID: 19343222 PMCID: PMC2659453 DOI: 10.1371/journal.pcbi.1000342] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2008] [Accepted: 02/26/2009] [Indexed: 11/19/2022] Open
Abstract
Synchronized oscillation is very commonly observed in many neuronal systems and
might play an important role in the response properties of the system. We have
studied how the spontaneous oscillatory activity affects the responsiveness of a
neuronal network, using a neural network model of the visual cortex built from
Hodgkin-Huxley type excitatory (E-) and inhibitory (I-) neurons. When the
isotropic local E-I and I-E synaptic connections were sufficiently strong, the
network commonly generated gamma frequency oscillatory firing patterns in
response to random feed-forward (FF) input spikes. This spontaneous oscillatory
network activity injects a periodic local current that could amplify a weak
synaptic input and enhance the network's responsiveness. When E-E
connections were added, we found that the strength of oscillation can be
modulated by varying the FF input strength without any changes in single neuron
properties or interneuron connectivity. The response modulation is proportional
to the oscillation strength, which leads to self-regulation such that the
cortical network selectively amplifies various FF inputs according to its
strength, without requiring any adaptation mechanism. We show that this
selective cortical amplification is controlled by E-E cell interactions. We also
found that this response amplification is spatially localized, which suggests
that the responsiveness modulation may also be spatially selective. This
suggests a generalized mechanism by which neural oscillatory activity can
enhance the selectivity of a neural network to FF inputs. In the nervous system, information is delivered and processed digitally via
voltage spikes transmitted between cells. A neural system is characterized by
its input/output spike signal patterns. Generally, a network of neurons shows a
very different response pattern than that of a single neuron. In some cases, a
neural network generates interesting population activities, such as synchronized
oscillations, which are thought to modulate the response properties of the
network. However, the exact role of these neural oscillations is unknown. We
investigated the relationship between the oscillatory activity and the response
modulation in neural networks using computational simulation modeling. We found
that the response of the system is significantly modified by the oscillations in
the network. In particular, the responsiveness to weak inputs is remarkably
enhanced. This suggests that the oscillation can differentially amplify sensory
information depending on the input signal conditions. We conclude that a neural
network can dynamically modify its response properties by the selective
amplification of sensory signals due to oscillation activity, which may explain
some experimental observations and help us to better understand neural
systems.
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Affiliation(s)
- Se-Bum Paik
- Department of Physics, University of California Berkeley, Berkeley, California, United States of America.
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361
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Abstract
How can the central nervous system make accurate decisions about external stimuli
at short times on the basis of the noisy responses of nerve cell populations? It
has been suggested that spike time latency is the source of fast decisions.
Here, we propose a simple and fast readout mechanism, the temporal
Winner-Take-All (tWTA), and undertake a study of its accuracy. The tWTA is
studied in the framework of a statistical model for the dynamic response of a
nerve cell population to an external stimulus. Each cell is characterized by a
preferred stimulus, a unique value of the external stimulus for which it
responds fastest. The tWTA estimate for the stimulus is the preferred stimulus
of the cell that fired the first spike in the entire population. We then pose
the questions: How accurate is the tWTA readout? What are the parameters that
govern this accuracy? What are the effects of noise correlations and baseline
firing? We find that tWTA sensitivity to the stimulus grows algebraically fast
with the number of cells in the population, N, in contrast to
the logarithmic slow scaling of the conventional rate-WTA sensitivity with
N. Noise correlations in first-spike times of different
cells can limit the accuracy of the tWTA readout, even in the limit of large
N, similar to the effect that has been observed in
population coding theory. We show that baseline firing also has a detrimental
effect on tWTA accuracy. We suggest a generalization of the tWTA, the
n-tWTA, which estimates the stimulus by the identity of the
group of cells firing the first n spikes and show how this
simple generalization can overcome the detrimental effect of baseline firing.
Thus, the tWTA can provide fast and accurate responses discriminating between a
small number of alternatives. High accuracy in estimation of a continuous
stimulus can be obtained using the n-tWTA. Considerable experimental as well as theoretical effort has been devoted to the
investigation of the neural code. The traditional approach has been to study the
information content of the total neural spike count during a long period of
time. However, in many cases, the central nervous system is required to estimate
the external stimulus at much shorter times. What readout mechanism could
account for such fast decisions? We suggest a readout mechanism that estimates
the external stimulus by the first spike in the population, the tWTA. We show
that the tWTA can account for accurate discriminations between a small number of
choices. We find that the accuracy of the tWTA is limited by the neuronal
baseline firing. We further find that, due to baseline firing, the single first
spike does not encode sufficient information for estimating a continuous
variable, such as the direction of motion of a visual stimulus, with fine
resolution. In such cases, fast and accurate decisions can be obtained by a
generalization of the tWTA to a readout that estimates the stimulus by the first
n spikes fire by the population, where n
is larger than the mean number of baseline spikes in the population.
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362
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363
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Zheng L, Nikolaev A, Wardill TJ, O'Kane CJ, de Polavieja GG, Juusola M. Network adaptation improves temporal representation of naturalistic stimuli in Drosophila eye: I dynamics. PLoS One 2009; 4:e4307. [PMID: 19180196 PMCID: PMC2628724 DOI: 10.1371/journal.pone.0004307] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2008] [Accepted: 12/23/2008] [Indexed: 12/17/2022] Open
Abstract
Because of the limited processing capacity of eyes, retinal networks must adapt constantly to best present the ever changing visual world to the brain. However, we still know little about how adaptation in retinal networks shapes neural encoding of changing information. To study this question, we recorded voltage responses from photoreceptors (R1–R6) and their output neurons (LMCs) in the Drosophila eye to repeated patterns of contrast values, collected from natural scenes. By analyzing the continuous photoreceptor-to-LMC transformations of these graded-potential neurons, we show that the efficiency of coding is dynamically improved by adaptation. In particular, adaptation enhances both the frequency and amplitude distribution of LMC output by improving sensitivity to under-represented signals within seconds. Moreover, the signal-to-noise ratio of LMC output increases in the same time scale. We suggest that these coding properties can be used to study network adaptation using the genetic tools in Drosophila, as shown in a companion paper (Part II).
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Affiliation(s)
- Lei Zheng
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Anton Nikolaev
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Trevor J. Wardill
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Cahir J. O'Kane
- Department of Genetics, University of Cambridge, Cambridge, United Kingdom
| | - Gonzalo G. de Polavieja
- Department of Theoretical Physics, Universidad Autónoma de Madrid, Madrid, Spain
- Instituto ‘Nicolás Cabrera’ de Física de Materiales, Universidad Autónoma de Madrid, Madrid, Spain
| | - Mikko Juusola
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
- State Key Laboratory of Cognitive Neuroscience, Beijing Normal University, Beijing, China
- * E-mail:
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364
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Cerquera A, Greschner M, Freund JA. Classifying the motion of visual stimuli from the spike response of a population of retinal ganglion cells. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2009; 2008:4082-5. [PMID: 19163609 DOI: 10.1109/iembs.2008.4650106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
We present an analysis of the spike response of a retinal ganglion cell ensemble. The retina of a turtle was stimulated in vitro by moving light patterns. Its non-steady motion was specified by two features: changes of direction and changes of speed. The spike response of a ganglion cell population was recorded extracellularly with a multielectrode array and responding neurons were identified through spike sorting. Restricting further analysis to a time window of greatest firing activity, we selected a subset of cells with reliable firing patterns, excluding cells that were not selective to the stimulus. The reliability of a firing pattern was assessed on the single cell level in terms of two measures: temporal precision (jitter) of the first spike and the fraction of trials in which a spike was generated. We then condensed the spike response of the extracted group by merging the multivariate spike trains into a single spike train. Finally, we compared different coding hypotheses that are based on the timing of the first and the second spike of the population or the spike count in the preselected time window. We found that the second spike of the population significantly increases the classification efficiency beyond that of the first spike. Moreover, the combination of first plus second spike is comparably efficient as the combination of the first spike plus the spike count but allows for a classification that is much faster.
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Affiliation(s)
- Alexander Cerquera
- Faculty of Electronic and Biomedical Engineering, Work Group Complex Systems of the Antonio Nariño University in Bogotá, Colombia.
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365
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Desbordes G, Jin J, Weng C, Lesica NA, Stanley GB, Alonso JM. Timing precision in population coding of natural scenes in the early visual system. PLoS Biol 2009; 6:e324. [PMID: 19090624 PMCID: PMC2602720 DOI: 10.1371/journal.pbio.0060324] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2008] [Accepted: 11/10/2008] [Indexed: 11/18/2022] Open
Abstract
The timing of spiking activity across neurons is a fundamental aspect of the neural population code. Individual neurons in the retina, thalamus, and cortex can have very precise and repeatable responses but exhibit degraded temporal precision in response to suboptimal stimuli. To investigate the functional implications for neural populations in natural conditions, we recorded in vivo the simultaneous responses, to movies of natural scenes, of multiple thalamic neurons likely converging to a common neuronal target in primary visual cortex. We show that the response of individual neurons is less precise at lower contrast, but that spike timing precision across neurons is relatively insensitive to global changes in visual contrast. Overall, spike timing precision within and across cells is on the order of 10 ms. Since closely timed spikes are more efficient in inducing a spike in downstream cortical neurons, and since fine temporal precision is necessary to represent the more slowly varying natural environment, we argue that preserving relative spike timing at a ∼10-ms resolution is a crucial property of the neural code entering cortex. Neurons convey information about the world in the form of trains of action potentials (spikes). These trains are highly repeatable when the same stimulus is presented multiple times, and this temporal precision across repetitions can be as fine as a few milliseconds. It is usually assumed that this time scale also corresponds to the timing precision of several neighboring neurons firing in concert. However, the relative timing of spikes emitted by different neurons in a local population is not necessarily as fine as the temporal precision across repetitions within a single neuron. In the visual system of the brain, the level of contrast in the image entering the retina can affect single-neuron temporal precision, but the effects of contrast on the neural population code are unknown. Here we show that the temporal scale of the population code entering visual cortex is on the order of 10 ms and is largely insensitive to changes in visual contrast. Since closely timed spikes are more efficient in inducing a spike in downstream cortical neurons, and since fine temporal precision is necessary in representing the more slowly varying natural environment, preserving relative spike timing at a ∼10-ms resolution may be a crucial property of the neural code entering cortex. Early neural representation of visual scenes occurs with a temporal precision on the order of 10 ms, which is precise enough to strongly drive downstream neurons in the visual pathway. Unlike individual neurons, the neural population code is largely insensitive to pronounced changes in visual contrast.
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Affiliation(s)
- Gaëlle Desbordes
- Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, USA.
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366
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McLelland D, Paulsen O. Neuronal oscillations and the rate-to-phase transform: mechanism, model and mutual information. J Physiol 2008; 587:769-85. [PMID: 19103680 PMCID: PMC2669970 DOI: 10.1113/jphysiol.2008.164111] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Theoretical and experimental studies suggest that oscillatory modes of processing play an important role in neuronal computations. One well supported idea is that the net excitatory input during oscillations will be reported in the phase of firing, a ‘rate-to-phase transform’, and that this transform might enable a temporal code. Here, we investigate the efficiency of this code at the level of fundamental single cell computations. We first develop a general framework for the understanding of the rate-to-phase transform as implemented by single neurons. Using whole cell patch-clamp recordings of rat hippocampal pyramidal neurons in vitro, we investigated the relationship between tonic excitation and phase of firing during simulated theta frequency (5 Hz) and gamma frequency (40 Hz) oscillations, over a range of physiological firing rates. During theta frequency oscillations, the phase of the first spike per cycle was a near-linear function of tonic excitation, advancing through a full 180 deg, from the peak to the trough of the oscillation cycle as excitation increased. In contrast, this relationship was not apparent for gamma oscillations, during which the phase of firing was virtually independent of the level of tonic excitatory input within the range of physiological firing rates. We show that a simple analytical model can substantially capture this behaviour, enabling generalization to other oscillatory states and cell types. The capacity of such a transform to encode information is limited by the temporal precision of neuronal activity. Using the data from our whole cell recordings, we calculated the information about the input available in the rate or phase of firing, and found the phase code to be significantly more efficient. Thus, temporal modes of processing can enable neuronal coding to be inherently more efficient, thereby allowing a reduction in processing time or in the number of neurons required.
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Affiliation(s)
- Douglas McLelland
- Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK.
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367
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Middleton JW, Longtin A, Benda J, Maler L. Postsynaptic receptive field size and spike threshold determine encoding of high-frequency information via sensitivity to synchronous presynaptic activity. J Neurophysiol 2008; 101:1160-70. [PMID: 19091925 DOI: 10.1152/jn.90814.2008] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Parallel sensory streams carrying distinct information about various stimulus properties have been observed in several sensory systems, including the visual system. What remains unclear is why some of these streams differ in the size of their receptive fields (RFs). In the electrosensory system, neurons with large RFs have short-latency responses and are tuned to high-frequency inputs. Conversely, neurons with small RFs are low-frequency tuned and exhibit longer-latency responses. What principle underlies this organization? We show experimentally that synchronous electroreceptor afferent (P-unit) spike trains selectively encode high-frequency stimulus information from broadband signals. This finding relies on a comparison of stimulus-spike output coherence using output trains obtained by either summing pairs of recorded afferent spike trains or selecting synchronous spike trains based on coincidence within a small time window. We propose a physiologically realistic decoding mechanism, based on postsynaptic RF size and postsynaptic output rate normalization that tunes target pyramidal cells in different electrosensory maps to low- or high-frequency signal components. By driving realistic neuron models with experimentally obtained P-unit spike trains, we show that a small RF is matched with a postsynaptic integration regime leading to responses over a broad range of frequencies, and a large RF with a fluctuation-driven regime that requires synchronous presynaptic input and therefore selectively encodes higher frequencies, confirming recent experimental data. Thus our work reveals that the frequency content of a broadband stimulus extracted by pyramidal cells, from P-unit afferents, depends on the amount of feedforward convergence they receive.
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Affiliation(s)
- Jason W Middleton
- Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
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368
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Gollisch T. Throwing a glance at the neural code: rapid information transmission in the visual system. HFSP JOURNAL 2008; 3:36-46. [PMID: 19649155 DOI: 10.2976/1.3027089] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2008] [Accepted: 10/27/2008] [Indexed: 11/19/2022]
Abstract
Our visual system can operate at fascinating speeds. Psychophysical experiments teach us that the processing of complex natural images and visual object recognition require a mere split second. Even in everyday life, our gaze seldom rests for long on any particular spot of the visual scene before a sudden movement of the eyes or the head shifts it to a new location. These observations challenge our understanding of how neurons in the visual system of the brain represent, process, and transmit the relevant visual information quickly enough. This article argues that the speed of visual processing provides an adjuvant framework for studying the neural code in the visual system. In the retina, which constitutes the first stage of visual processing, recent experiments have highlighted response features that allow for particularly rapid information transmission. This sets the stage for discussing some of the fundamental questions in the research of neural coding. How do downstream brain regions read out signals from the retina and combine them with intrinsic signals that accompany eye movements? And, how do the neural response features ultimately affect perception and behavior?
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Affiliation(s)
- Tim Gollisch
- Max Planck Institute of Neurobiology, Visual Coding Group, Am Klopferspitz 18, 82152 Martinsried, Germany
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369
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Gollisch T, Meister M. Modeling convergent ON and OFF pathways in the early visual system. BIOLOGICAL CYBERNETICS 2008; 99:263-278. [PMID: 19011919 PMCID: PMC2784078 DOI: 10.1007/s00422-008-0252-y] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2008] [Accepted: 08/25/2008] [Indexed: 05/27/2023]
Abstract
For understanding the computation and function of single neurons in sensory systems, one needs to investigate how sensory stimuli are related to a neuron's response and which biological mechanisms underlie this relationship. Mathematical models of the stimulus-response relationship have proved very useful in approaching these issues in a systematic, quantitative way. A starting point for many such analyses has been provided by phenomenological "linear-nonlinear" (LN) models, which comprise a linear filter followed by a static nonlinear transformation. The linear filter is often associated with the neuron's receptive field. However, the structure of the receptive field is generally a result of inputs from many presynaptic neurons, which may form parallel signal processing pathways. In the retina, for example, certain ganglion cells receive excitatory inputs from ON-type as well as OFF-type bipolar cells. Recent experiments have shown that the convergence of these pathways leads to intriguing response characteristics that cannot be captured by a single linear filter. One approach to adjust the LN model to the biological circuit structure is to use multiple parallel filters that capture ON and OFF bipolar inputs. Here, we review these new developments in modeling neuronal responses in the early visual system and provide details about one particular technique for obtaining the required sets of parallel filters from experimental data.
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Affiliation(s)
- Tim Gollisch
- Visual Coding Group, Max Planck Institute of Neurobiology, Am Klopferspitz 18, 82152 Martinsried, Germany
| | - Markus Meister
- Department of Molecular and Cellular Biology, Center for Brain Science, Harvard University, 16 Divinity Ave, Cambridge, MA 02138 USA
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370
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Wilson RI. Neural and behavioral mechanisms of olfactory perception. Curr Opin Neurobiol 2008; 18:408-12. [PMID: 18809492 DOI: 10.1016/j.conb.2008.08.015] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2008] [Revised: 08/27/2008] [Accepted: 08/27/2008] [Indexed: 10/21/2022]
Abstract
Recent in vivo and in vitro studies have challenged existing models of olfactory processing in the vertebrate olfactory bulb and insect antennal lobe. Whereas lateral connectivity between olfactory glomeruli was previously thought to form a dense, topographically organized inhibitory surround, new evidence suggests that lateral connections may be sparse, nontopographic, and partly excitatory. Other recent studies highlight the role of active sensing (sniffing) in shaping odor-evoked neural activity and perception.
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Affiliation(s)
- Rachel I Wilson
- Department of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, United States.
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371
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Wohrer A, Kornprobst P. Virtual Retina: a biological retina model and simulator, with contrast gain control. J Comput Neurosci 2008; 26:219-49. [PMID: 18670870 DOI: 10.1007/s10827-008-0108-4] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2007] [Revised: 05/14/2008] [Accepted: 06/16/2008] [Indexed: 10/21/2022]
Abstract
We propose a new retina simulation software, called Virtual Retina, which transforms a video into spike trains. Our goal is twofold: Allow large scale simulations (up to 100,000 neurons) in reasonable processing times and keep a strong biological plausibility, taking into account implementation constraints. The underlying model includes a linear model of filtering in the Outer Plexiform Layer, a shunting feedback at the level of bipolar cells accounting for rapid contrast gain control, and a spike generation process modeling ganglion cells. We prove the pertinence of our software by reproducing several experimental measurements from single ganglion cells such as cat X and Y cells. This software will be an evolutionary tool for neuroscientists that need realistic large-scale input spike trains in subsequent treatments, and for educational purposes.
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Affiliation(s)
- Adrien Wohrer
- Odyssée Project Team (INRIA/ENPC/ENS), INRIA, Sophia-Antipolis, 2004 Route des Lucioles, 06902 Sophia Antipolis, France.
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372
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Werner B, Cook PB, Passaglia CL. Complex temporal response patterns with a simple retinal circuit. J Neurophysiol 2008; 100:1087-97. [PMID: 18579656 DOI: 10.1152/jn.90527.2008] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The retina can respond to a wide array of features in the visual input. It was recently reported that the retina can even recognize complicated temporal input patterns and signal violations in the patterns. When a sequence of flashes was presented, ganglion cells exhibited a variety of firing profiles and many cells showed an "omitted stimulus response" (OSR), in which they fired strongly if a flash in the sequence was omitted. We examined the synaptic origins of the OSR by recording excitatory synaptic currents from ganglion cells in the salamander retina in response to periodic flash sequences. Consistent with previous spike recordings, ganglion cells exhibited an OSR in their current response and the OSR shifted in time with a change in flash frequency such that it could predict when the next flash should have occurred. Although the behavior may seem sophisticated, we show that a simple linear-nonlinear model with a spike threshold can account for the OSR in on ganglion cells and that the variety of complex firing profiles seen in other ganglion cells can be explained by adding contributions from the off pathway. We discuss the physiological and simulation results and their implications for understanding retinal mechanisms of visual information processing.
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Affiliation(s)
- Birgit Werner
- Program in Neuroscience, Boston University, Boston, MA, USA.
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373
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White matter in learning, cognition and psychiatric disorders. Trends Neurosci 2008; 31:361-70. [PMID: 18538868 DOI: 10.1016/j.tins.2008.04.001] [Citation(s) in RCA: 898] [Impact Index Per Article: 56.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2008] [Revised: 04/09/2008] [Accepted: 04/21/2008] [Indexed: 12/15/2022]
Abstract
White matter is the brain region underlying the gray matter cortex, composed of neuronal fibers coated with electrical insulation called myelin. Previously of interest in demyelinating diseases such as multiple sclerosis, myelin is attracting new interest as an unexpected contributor to a wide range of psychiatric disorders, including depression and schizophrenia. This is stimulating research into myelin involvement in normal cognitive function, learning and IQ. Myelination continues for decades in the human brain; it is modifiable by experience, and it affects information processing by regulating the velocity and synchrony of impulse conduction between distant cortical regions. Cell-culture studies have identified molecular mechanisms regulating myelination by electrical activity, and myelin also limits the critical period for learning through inhibitory proteins that suppress axon sprouting and synaptogenesis.
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