1
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Zhang P, Li C, Ma X, Ye J, Wang D, Cao H, Yu G, Wang W, Lv X, Cai C. Glycopolymer with Sulfated Fucose and 6'-Sialyllactose as a Dual-Targeted Inhibitor on Resistant Influenza A Virus Strains. ACS Macro Lett 2024; 13:874-881. [PMID: 38949618 DOI: 10.1021/acsmacrolett.4c00221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/02/2024]
Abstract
The frequent mutations of influenza A virus (IAV) have led to an urgent need for the development of innovative antiviral drugs. Glycopolymers offer significant advantages in biomedical applications owing to their biocompatibility and structural diversity. However, the primary challenge lies in the design and synthesis of well-defined glycopolymers to precisely control their biological functionalities. In this study, functional glycopolymers with sulfated fucose and 6'-sialyllactose were successfully synthesized through ring-opening metathesis polymerization and a postmodification strategy. The optimized heteropolymer exhibited simultaneous targeting of hemagglutinin and neuraminidase on the surface of IAV, as evidenced by MU-NANA assay and hemagglutination inhibition data. Antiviral experiments demonstrated that the glycopolymer displayed broad and efficient inhibitory activity against wild-type and mutant strains of H1N1 and H3N2 subtypes in vitro, thereby establishing its potential as a dual-targeted inhibitor for combating IAV resistance.
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Affiliation(s)
- Ping Zhang
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
| | - Chenning Li
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences (CAS), Chaoyang District, Beijing 100101, P. R. China
| | - Xiaoyao Ma
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
| | - Jinfeng Ye
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
| | - Depeng Wang
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
| | - Hongzhi Cao
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Laboratory for Marine Drugs and Bioproducts, Qingdao Marine Science and Technology Center, Qingdao 266237, P. R. China
| | - Guangli Yu
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Laboratory for Marine Drugs and Bioproducts, Qingdao Marine Science and Technology Center, Qingdao 266237, P. R. China
| | - Wei Wang
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Laboratory for Marine Drugs and Bioproducts, Qingdao Marine Science and Technology Center, Qingdao 266237, P. R. China
| | - Xun Lv
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences (CAS), Chaoyang District, Beijing 100101, P. R. China
| | - Chao Cai
- Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Shandong Provincial Key Laboratory of Glycoscience and Glycotechnology, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, P. R. China
- Laboratory for Marine Drugs and Bioproducts, Qingdao Marine Science and Technology Center, Qingdao 266237, P. R. China
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2
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Qualls ML, Hagewood H, Lou J, Mattern-Schain SI, Zhang X, Mountain DJ, Best MD. Bis-Boronic Acid Liposomes for Carbohydrate Recognition and Cellular Delivery. Chembiochem 2022; 23:e202200402. [PMID: 36044591 DOI: 10.1002/cbic.202200402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 08/30/2022] [Indexed: 11/08/2022]
Abstract
Liposomes are effective therapeutic delivery nanocarriers due to their ability to encapsulate and enhance the pharmacokinetic properties of a wide range of drugs and diagnostic agents. A primary area in which improvement is needed for liposomal drug delivery is to enhance the delivery of these nanocarriers to cells. Cell membrane glycans provide exciting targets for liposomal delivery since they are often densely clustered on cell membranes and glycan overabundance and aberrant glycosylation patterns are a common feature of diseased cells. Herein, we report a liposome platform incorporating bis-boronic acid lipids (BBALs) to increase valency in order to achieve selective saccharide sensing and enhance cell surface binding interactions based on carbohydrate binding interactions. In order to vary properties, multiple BBALs ( 1a-d ) with variable linkers in between the binding units were designed and synthesized. Fluorescence-based microplate screening of carbohydrate binding showed that these compounds exhibit varying binding properties depending on their structures. Additionally, fluorescence microscopy experiments indicated enhancements in cellular association when BBALs were incorporated in liposomes. These results demonstrate that multivalent BBALs serve as an exciting glycan binding liposome system for targeted liposome delivery.
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Affiliation(s)
- Megan L Qualls
- The University of Tennessee Knoxville, Chemistry, UNITED STATES
| | - Hannah Hagewood
- The University of Tennessee Knoxville, Chemistry, UNITED STATES
| | - Jinchao Lou
- The University of Tennessee Knoxville, Chemistry, UNITED STATES
| | | | - Xiaoyu Zhang
- The University of Tennessee Knoxville, Chemistry, UNITED STATES
| | | | - Michael D Best
- University of Tennessee, Dept. of Chemistry, 352 Buehler Hall, 37996, Knoxville, UNITED STATES
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3
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Manabe Y, Tsutsui M, Hirao K, Kobayashi R, Inaba H, Matsuura K, Yoshidome D, Kabayama K, Fukase K. Mechanistic Studies for the Rational Design of Multivalent Glycodendrimers. Chemistry 2022; 28:e202201848. [DOI: 10.1002/chem.202201848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Indexed: 11/11/2022]
Affiliation(s)
- Yoshiyuki Manabe
- Department of Chemistry Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
- Forefront Research Center Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
| | - Masato Tsutsui
- Department of Chemistry Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
| | - Kohtaro Hirao
- Department of Chemistry Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
| | - Risako Kobayashi
- Department of Chemistry and Biotechnology Graduate School of Engineering Center for Research on Green Sustainable Chemistry Tottori University 4-101 Koyama-Minami Tottori 680-8552 Japan
| | - Hiroshi Inaba
- Department of Chemistry and Biotechnology Graduate School of Engineering Center for Research on Green Sustainable Chemistry Tottori University 4-101 Koyama-Minami Tottori 680-8552 Japan
- Centre for Research on Green Sustainable Chemistry Tottori University 4-101 Koyama-Minami Tottori 680-8552 Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology Graduate School of Engineering Center for Research on Green Sustainable Chemistry Tottori University 4-101 Koyama-Minami Tottori 680-8552 Japan
- Centre for Research on Green Sustainable Chemistry Tottori University 4-101 Koyama-Minami Tottori 680-8552 Japan
| | - Daisuke Yoshidome
- Schrödinger K.K. 17F Marunouchi Trust Tower North, 1-8-1 Marunouchi Chiyoda-ku Tokyo 100-0005 Japan
| | - Kazuya Kabayama
- Department of Chemistry Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
- Forefront Research Center Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
| | - Koichi Fukase
- Department of Chemistry Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
- Forefront Research Center Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
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4
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Nilam M, Karmacharya S, Nau WM, Hennig A. Proton‐Gradient‐Driven Sensitivity Enhancement of Liposome‐Encapsulated Supramolecular Chemosensors. Angew Chem Int Ed Engl 2022; 61:e202207950. [PMID: 35687027 PMCID: PMC9543936 DOI: 10.1002/anie.202207950] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Indexed: 11/06/2022]
Abstract
An overarching challenge in the development of supramolecular sensor systems is to enhance their sensitivity, which commonly involves the synthesis of refined receptors with increased affinity to the analyte. We show that a dramatic sensitivity increase by 1–2 orders of magnitude can be achieved by encapsulating supramolecular chemosensors inside liposomes and exposing them to a pH gradient across the lipid bilayer membrane. This causes an imbalance of the influx and efflux rates of basic and acidic analytes leading to a significantly increased concentration of the analyte in the liposome interior. The utility of our liposome‐enhanced sensors was demonstrated with various host–dye reporter pairs and sensing mechanisms, and we could easily increase the sensitivity towards multiple biologically relevant analytes, including the neurotransmitters serotonin and tryptamine.
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Affiliation(s)
- Mohamed Nilam
- Center for Cellular Nanoanalytics (CellNanOs) and Department of Biology and Chemistry Universität Osnabrück Barbarastraße 7 49069 Osnabrück Germany
- School of Science Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
| | - Shreya Karmacharya
- School of Science Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
| | - Werner M. Nau
- School of Science Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
| | - Andreas Hennig
- Center for Cellular Nanoanalytics (CellNanOs) and Department of Biology and Chemistry Universität Osnabrück Barbarastraße 7 49069 Osnabrück Germany
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5
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Almeida‐Marrero V, Bethlehem F, Longo S, Bertolino MC, Torres T, Huskens J, de la Escosura A. Tailored Multivalent Targeting of Siglecs with Photosensitizing Liposome Nanocarriers. Angew Chem Int Ed Engl 2022; 61:e202206900. [PMID: 35652453 PMCID: PMC9401027 DOI: 10.1002/anie.202206900] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Indexed: 11/18/2022]
Abstract
The modification of surfaces with multiple ligands allows the formation of platforms for the study of multivalency in diverse processes. Herein we use this approach for the implementation of a photosensitizer (PS)‐nanocarrier system that binds efficiently to siglec‐10, a member of the CD33 family of siglecs (sialic acid (SA)‐binding immunoglobulin‐like lectins). In particular, a zinc phthalocyanine derivative bearing three SA moieties (PcSA) has been incorporated in the membrane of small unilamellar vesicles (SUVs), retaining its photophysical properties upon insertion into the SUV's membrane. The interaction of these biohybrid systems with human siglec‐10‐displaying supported lipid bilayers (SLBs) has shown the occurrence of weakly multivalent, superselective interactions between vesicle and SLB. The SLB therefore acts as an excellent cell membrane mimic, while the binding with PS‐loaded SUVs shows the potential for targeting siglec‐expressing cells with photosensitizing nanocarriers.
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Affiliation(s)
- Verónica Almeida‐Marrero
- Department of Organic Chemistry Universidad Autónoma de Madrid Campus de Cantoblanco 28049 Madrid Spain
| | - Fleur Bethlehem
- Department of Molecules & Materials MESA+ Institute for Nanotechnology Faculty of Science and Technology University of Twente P.O. Box 217 7500 AE Enschede The Netherlands
| | - Sara Longo
- Department of Molecules & Materials MESA+ Institute for Nanotechnology Faculty of Science and Technology University of Twente P.O. Box 217 7500 AE Enschede The Netherlands
| | - M. Candelaria Bertolino
- Department of Molecules & Materials MESA+ Institute for Nanotechnology Faculty of Science and Technology University of Twente P.O. Box 217 7500 AE Enschede The Netherlands
| | - Tomás Torres
- Department of Organic Chemistry Universidad Autónoma de Madrid Campus de Cantoblanco 28049 Madrid Spain
- Institute for Advanced Research in Chemistry (IAdChem) Campus de Cantoblanco 28049 Madrid Spain
- Tomás Torres IMDEA Nanoscience Campus de Cantoblanco 28049 Madrid Spain
| | - Jurriaan Huskens
- Department of Molecules & Materials MESA+ Institute for Nanotechnology Faculty of Science and Technology University of Twente P.O. Box 217 7500 AE Enschede The Netherlands
| | - Andrés de la Escosura
- Department of Organic Chemistry Universidad Autónoma de Madrid Campus de Cantoblanco 28049 Madrid Spain
- Institute for Advanced Research in Chemistry (IAdChem) Campus de Cantoblanco 28049 Madrid Spain
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6
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Agrahari AK, Kumar S, Pandey MD, Rajkhowa S, Jaiswal MK, Tiwari VK. Click Chemistry ‐ Inspired Synthesis of Porphyrin Hybrid Glycodendrimers as Fluorescent Sensor for Cu(II) Ions. ChemistrySelect 2022. [DOI: 10.1002/slct.202202273] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Anand K. Agrahari
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi UP-221005 INDIA
- Department of Chemistry University of California-Davis Davis CA 95616 U.S.A
| | - Sunil Kumar
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi UP-221005 INDIA
| | - Mrituanjay D. Pandey
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi UP-221005 INDIA
| | - Sanchayita Rajkhowa
- Department of Chemistry The Assam Royal Global University Guwahati Assam 781035 INDIA
| | - Manoj K. Jaiswal
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi UP-221005 INDIA
| | - Vinod K. Tiwari
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi UP-221005 INDIA
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7
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Nilam M, Karmacharya S, Nau WM, Hennig A. Proton‐Gradient‐Driven Sensitivity Enhancement of Liposome‐Encapsulated Supramolecular Chemosensors. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202207950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Mohamed Nilam
- Universität Osnabrück: Universitat Osnabruck Fachbereich Biologie/Chemie GERMANY
| | - Shreya Karmacharya
- Jacobs University Bremen gGmbH Department of Life Sciences and Chemistry GERMANY
| | - Werner M. Nau
- Jacobs University Bremen gGmbH Department of Life Sciences and Chemistry GERMANY
| | - Andreas Hennig
- Universität Osnabrück: Universitat Osnabruck Institute of Chemistry of New Materials Barbarastr. 7 49069 Osnabrück GERMANY
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8
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Almeida-Marrero V, Bethlehem F, Longo S, Bertolino MC, Torres T, Huskens J, de la Escosura A. Tailored Multivalent Targeting of Siglecs with Photosensitizing Liposome Nanocarriers. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206900] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Verónica Almeida-Marrero
- Universidad Autonoma de Madrid - Campus de Cantoblanco: Universidad Autonoma de Madrid Organic Chemistry SPAIN
| | - Fleur Bethlehem
- University of Twente Institute for Nanotechnology: Universiteit Twente MESA+ Institute for Nanotechnology MESA+ NETHERLANDS
| | - Sara Longo
- University of Twente Institute for Nanotechnology: Universiteit Twente MESA+ Institute for Nanotechnology MESA+ NETHERLANDS
| | - M. Candelaria Bertolino
- University of Twente Institute for Nanotechnology: Universiteit Twente MESA+ Institute for Nanotechnology MESA+ NETHERLANDS
| | - Tomas Torres
- Universidad Autonoma de Madrid - Campus de Cantoblanco: Universidad Autonoma de Madrid Departmento de Química Orgánica Cantoblanco 28049 Madrid SPAIN
| | - Jurriaan Huskens
- University of Twente Institute for Nanotechnology: Universiteit Twente MESA+ Institute for Nanotechnology MESA+ NETHERLANDS
| | - Andrés de la Escosura
- Universidad Autonoma de Madrid - Campus de Cantoblanco: Universidad Autonoma de Madrid Organic Chemistry C/ Francisco Tomás y Valiente 7, Facultad de CienciasMódulo 01, Planta 4, L-401 28049 Madrid SPAIN
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9
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Osswald U, Boneberg J, Wittmann V. Photoswitching Affinity and Mechanism of Multivalent Lectin Ligands. Chemistry 2022; 28:e202200267. [PMID: 35286724 PMCID: PMC9325471 DOI: 10.1002/chem.202200267] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Indexed: 11/09/2022]
Abstract
Multivalent receptor–ligand binding is a key principle in a plethora of biological recognition processes. Immense binding affinities can be achieved with the correct spatial orientation of the ligands. Accordingly, the incorporation of photoswitches, which can be used to reversibly change the spatial orientation of molecules, into multivalent ligands is a means to alter the binding affinity and possibly also the binding mode of such ligands. We report a divalent ligand for the model lectin wheat germ agglutinin (WGA) containing an arylazopyrazole photoswitch. This switch, which has recently been introduced as an alternative to the more commonly used azobenzene moiety, is characterized by almost quantitative E/Z photoswitching in both directions, high quantum yields, and high thermal stability of the Z isomer. The ligand was designed in a way that only one of the isomers is able to bridge adjacent binding sites of WGA leading to a chelating binding mode. Photoswitching induces an unprecedentedly high change in lectin binding affinity as determined by isothermal titration calorimetry (ITC). Furthermore, additional dynamic light scattering (DLS) data suggest that the binding mode of the ligand changes from chelating binding of the E isomer to crosslinking binding of the Z isomer.
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Affiliation(s)
- Uwe Osswald
- Department of ChemistryUniversity of Konstanz78457KonstanzGermany
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10
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Goti G, Colombo C, Achilli S, Vives C, Thépaut M, Luczkowiak J, Labiod N, Delgado R, Fieschi F, Bernardi A, Vivès C. Precision Glycodendrimers for DC‐SIGN Targeting. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Giulio Goti
- Università degli Studi di Milano: Universita degli Studi di Milano Chemistry ITALY
| | - Cinzia Colombo
- Università degli Studi di Milano: Universita degli Studi di Milano Chemistry ITALY
| | | | | | | | - Joanna Luczkowiak
- Hospital Universitario 12 de Octubre Instituto de Investigación SPAIN
| | - Nuria Labiod
- Hospital Universitario 12 de Octubre Instituto de Investigación SPAIN
| | - Rafael Delgado
- Hospital Universitario 12 de Octubre Instituto de Investigación SPAIN
| | | | - Anna Bernardi
- Universita' di Milano Chimica via Golgi 19 20133 Milano ITALY
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11
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Guo L, Zhang Y, Wang Y, Xie M, Dai J, Qu Z, Zhou M, Cao S, Shi J, Wang L, Zuo X, Fan C, Li J. Directing Multivalent Aptamer-Receptor Binding on the Cell Surface with Programmable Atom-Like Nanoparticles. Angew Chem Int Ed Engl 2022; 61:e202117168. [PMID: 35226386 DOI: 10.1002/anie.202117168] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Indexed: 11/08/2022]
Abstract
Multivalent interactions of biomolecules play pivotal roles in physiological and pathological settings. Whereas the directionality of the interactions is crucial, the state-of-the-art synthetic multivalent ligand-receptor systems generally lack programmable approaches for orthogonal directionality. Here, we report the design of programmable atom-like nanoparticles (aptPANs) to direct multivalent aptamer-receptor binding on the cell interface. The positions of the aptamer motifs can be prescribed on tetrahedral DNA frameworks to realize atom-like orthogonal valence and direction, enabling the construction of multivalent molecules with fixed aptamer copy numbers but different directionality. These directional-yet-flexible aptPAN molecules exhibit the adaptability to the receptor distribution on cell surfaces. We demonstrate the high-affinity tumor cell binding with a linear aptPAN oligomer (≈13-fold improved compared to free aptamers), which leads to ≈50 % suppression of cell growth.
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Affiliation(s)
- Linjie Guo
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China.,University of Chinese Academy of Sciences, Beijing, 100049, China.,The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201210, China
| | - Yueyue Zhang
- Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China
| | - Yue Wang
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Mo Xie
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Jiangbing Dai
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Zhibei Qu
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, 200240, Shanghai, China
| | - Mo Zhou
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Shuting Cao
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Jiye Shi
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Lihua Wang
- The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201210, China.,Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200241, China
| | - Xiaolei Zuo
- Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China
| | - Chunhai Fan
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, 200240, Shanghai, China
| | - Jiang Li
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China.,The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201210, China.,School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, 200240, Shanghai, China
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12
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Guo L, Zhang Y, Wang Y, Xie M, Dai J, Qu Z, Zhou M, Cao S, Shi J, Wang L, Zuo X, Fan C, Li J. Directing Multivalent Aptamer‐Receptor Binding on the Cell Surface with Programmable Atom‐Like Nanoparticles. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202117168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Linjie Guo
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
- University of Chinese Academy of Sciences Beijing 100049 China
- The Interdisciplinary Research Center Shanghai Synchrotron Radiation Facility Zhangjiang Laboratory Shanghai Advanced Research Institute Chinese Academy of Sciences Shanghai 201210 China
| | - Yueyue Zhang
- Institute of Molecular Medicine Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200127 China
| | - Yue Wang
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Mo Xie
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
| | - Jiangbing Dai
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
| | - Zhibei Qu
- School of Chemistry and Chemical Engineering Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine Shanghai Jiao Tong University 200240 Shanghai China
| | - Mo Zhou
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
| | - Shuting Cao
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
| | - Jiye Shi
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
| | - Lihua Wang
- The Interdisciplinary Research Center Shanghai Synchrotron Radiation Facility Zhangjiang Laboratory Shanghai Advanced Research Institute Chinese Academy of Sciences Shanghai 201210 China
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Shanghai 200241 China
| | - Xiaolei Zuo
- Institute of Molecular Medicine Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200127 China
| | - Chunhai Fan
- School of Chemistry and Chemical Engineering Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine Shanghai Jiao Tong University 200240 Shanghai China
| | - Jiang Li
- Division of Physical Biology Department CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
- The Interdisciplinary Research Center Shanghai Synchrotron Radiation Facility Zhangjiang Laboratory Shanghai Advanced Research Institute Chinese Academy of Sciences Shanghai 201210 China
- School of Chemistry and Chemical Engineering Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine Shanghai Jiao Tong University 200240 Shanghai China
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13
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Sbravati D, Bonardi A, Bua S, Angeli A, Ferraroni M, Nocentini A, Casnati A, Gratteri P, Sansone F, Supuran CT. Calixarenes Incorporating Sulfonamide Moieties: Versatile Ligands for Carbonic Anhydrases Inhibition. Chemistry 2021; 28:e202103527. [PMID: 34882858 DOI: 10.1002/chem.202103527] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Indexed: 11/10/2022]
Abstract
Carbonic anhydrases (CAs) continue to represent a relevant pharmaceutical target. The need of selective inhibitors and the involvement of these metalloenzymes in many multifaceted diseases boost the search for new ligands able to distinguish among the different CA isoforms, and for multifunctional systems simultaneously able to inhibit CAs and to interfere with other pathological events by interacting with additional targets. In this work, we successfully explored the possibility of preparing new CAs ligands by combining calixarenes with benzensulfonamide units. Inhibition tests towards three human CA isoforms evidenced, for some of the ligands, Ki values in the nanomolar range and promising selectivity. X-ray and molecular modeling studies provided information on the mode of binding of these calixarene derivatives. Thanks to the encouraging results and the structural features typical of the calixarene scaffold, it is then possible to plan for the future the design of multifunctional inhibitors for this class of widely spread enzymes.
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Affiliation(s)
- Davide Sbravati
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Alessandro Bonardi
- Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy.,Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, Laboratory of Molecular Modeling Cheminformatics & QSAR, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy
| | - Silvia Bua
- Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy
| | - Andrea Angeli
- Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy
| | - Marta Ferraroni
- Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Florence, Italy
| | - Alessio Nocentini
- Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy.,Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, Laboratory of Molecular Modeling Cheminformatics & QSAR, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy
| | - Alessandro Casnati
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Paola Gratteri
- Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy.,Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, Laboratory of Molecular Modeling Cheminformatics & QSAR, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy
| | - Francesco Sansone
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Claudiu T Supuran
- Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Polo Scientifico, Via U. Schiff 6, 50019, Sesto Fiorentino, Firenze, Italy
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14
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Kawamoto Y, Liu W, Yum JH, Park S, Sugiyama H, Takahashi Y, Takakura Y. Enhanced Immunostimulatory Activity of Covalent DNA Dendrons. Chembiochem 2021; 23:e202100583. [PMID: 34881505 DOI: 10.1002/cbic.202100583] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 12/01/2021] [Indexed: 11/10/2022]
Abstract
The present study focused on the design and synthesis of covalent DNA dendrons bearing multivalent cytosine-phosphate-guanine oligodeoxynucleotides (CpG ODNs) that can stimulate the immune system through the activation of TLR9. These dendrons were synthesized using branching trebler phosphoramidite containing three identical protecting groups that enabled the simultaneous synthesis of multiple strands on a single molecule. Compared with linear ODNs, covalent DNA dendrons were found to be more resistant to nuclease degradation and were more efficiently taken up by macrophage-like RAW264.7 cells. Cellular uptake was suggested to be mediated by macrophage scavenger receptors. The covalent DNA dendrons composed of multivalent immunostimulatory branches enhanced the secretion of proinflammatory cytokines TNF-α and IL-6 from RAW264.7 cells, and 9-branched DNA dendrons showed the highest enhancement. Given their enhanced efficacy, we expect covalent DNA dendrons to be useful structures of oligonucleotide medicines.
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Affiliation(s)
- Yusuke Kawamoto
- Department of Biopharmaceutics and Drug Metabolism, Graduate School of Pharmaceutical Sciences, Kyoto University, 46-29 Yoshidashimoadachi-cho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Wen Liu
- Department of Biopharmaceutics and Drug Metabolism, Graduate School of Pharmaceutical Sciences, Kyoto University, 46-29 Yoshidashimoadachi-cho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Ji Hye Yum
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawaoiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Soyoung Park
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawaoiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Hiroshi Sugiyama
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawaoiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan.,Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshidaushinomiya-cho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Yuki Takahashi
- Department of Biopharmaceutics and Drug Metabolism, Graduate School of Pharmaceutical Sciences, Kyoto University, 46-29 Yoshidashimoadachi-cho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Yoshinobu Takakura
- Department of Biopharmaceutics and Drug Metabolism, Graduate School of Pharmaceutical Sciences, Kyoto University, 46-29 Yoshidashimoadachi-cho, Sakyo-ku, Kyoto, 606-8501, Japan
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15
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Sethi S, Sugiyama H, Endo M. Biomimetic DNA Nanotechnology to Understand and Control Cellular Responses. Chembiochem 2021; 23:e202100446. [PMID: 34664334 DOI: 10.1002/cbic.202100446] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 10/12/2021] [Indexed: 12/15/2022]
Abstract
At the cellular level, numerous nanocues guide the cells to adhere, interact, proliferate, differentiate, etc. Understanding and manipulating the cellular functions in vitro, necessitates the elucidation of these nanocues provided to the cells by the extracellular matrix (ECM), neighbouring cells or in the form of ligands. DNA nanotechnology is a biocompatible, flexible and a promising molecular level toolkit for mimicking cell-cell and cell-matrix interactions. In this review, we summarize various advances in cell-matrix, cell-cell and cell receptor-ligand interactions using DNA nanotechnology as a tool. We also provide a brief outlook on the current challenges and the future potentials of these DNA-based nanostructures so as to inspire novel innovations in the field.
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Affiliation(s)
- Soumya Sethi
- Department of Chemistry, Graduate School of Science, Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Hiroshi Sugiyama
- Department of Chemistry, Graduate School of Science, Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto, 606-8501, Japan.,Institute for Integrated Cell-Material Sciences, Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Masayuki Endo
- Department of Chemistry, Graduate School of Science, Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto, 606-8501, Japan.,Institute for Integrated Cell-Material Sciences, Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto, 606-8501, Japan.,Organization for Research and Development of Innovative Science and Technology, Kansai University, Suita, Osaka, 564-8680, Japan
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16
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Kamoshita S, Matsui S, Suto N, Sakurai K. Reactivity Analysis of New Multivalent Electrophilic Probes for Affinity Labeling of Carbohydrate Binding Proteins. Chembiochem 2021; 23:e202100388. [PMID: 34490706 DOI: 10.1002/cbic.202100388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 09/05/2021] [Indexed: 11/07/2022]
Abstract
We have designed and synthesized six different multivalent electrophiles as carbohydrate affinity labeling probes. Evaluation of the reactivity of the electrophiles against peanut agglutinin (PNA) and Ricinus communis agglutinin (RCA) showed that p- and m-aryl sulfonyl fluoride are effective protein reactive groups that label carbohydrate binding lectins in a ligand-dependent fashion at a nanomolar probe concentration. Analysis of the selectivity of affinity labeling in the presence of excess BSA as a nonspecific protein indicated that m-arylsulfonyl fluoride is a more selective protein-reactive group, albeit with attenuated reactivity. Further analysis showed that the labeling efficiency of the multivalent electrophilic probes can be improved by employing reaction conditions involving 25 °C instead of typically employed 4 °C. Both isomers of arylsulfonyl fluoride groups together represent promising affinity labels for target identification studies that could serve as more efficient alternatives to photoreactive groups.
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Affiliation(s)
- Shione Kamoshita
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Saho Matsui
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Nanako Suto
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Kaori Sakurai
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
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17
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Srivastava AD, Unione L, Bunyatov M, Gagarinov IA, Delgado S, Abrescia NGA, Ardá A, Boons GJ. Chemoenzymatic Synthesis of Complex N-Glycans of the Parasite S. mansoni to Examine the Importance of Epitope Presentation on DC-SIGN recognition. Angew Chem Int Ed Engl 2021; 60:19287-19296. [PMID: 34124805 PMCID: PMC8456914 DOI: 10.1002/anie.202105647] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 06/02/2021] [Indexed: 12/14/2022]
Abstract
The importance of multivalency for N-glycan-protein interactions has primarily been studied by attachment of minimal epitopes to artificial multivalent scaffold and not in the context of multi-antennary glycans. N-glycans can be modified by bisecting GlcNAc, core xylosides and fucosides, and extended N-acetyl lactosamine moieties. The impact of such modifications on glycan recognition are also not well understood. We describe here a chemoenzymatic methodology that can provide N-glycans expressed by the parasitic worm S. mansoni having unique epitopes at each antenna and containing core xyloside. NMR, computational and electron microscopy were employed to investigate recognition of the glycans by the human lectin DC-SIGN. It revealed that core xyloside does not influence terminal epitope recognition. The multi-antennary glycans bound with higher affinity to DC-SIGN compared to mono-valent counterparts, which was attributed to proximity-induced effective concentration. The multi-antennary glycans cross-linked DC-SIGN into a dense network, which likely is relevant for antigen uptake and intracellular routing.
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Affiliation(s)
- Apoorva D Srivastava
- Department of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Luca Unione
- Department of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Mehman Bunyatov
- Department of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Ivan A Gagarinov
- Department of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Sandra Delgado
- Molecular Recognition and Host-Pathogen Interactions, CIC bioGUNE, Basque Research and Technology Alliance, BRTA, Bizkaia Technology Park, Building 800, 48162, Derio, Bizkaia, Spain
| | - Nicola G A Abrescia
- Molecular Recognition and Host-Pathogen Interactions, CIC bioGUNE, Basque Research and Technology Alliance, BRTA, Bizkaia Technology Park, Building 800, 48162, Derio, Bizkaia, Spain.,Ikerbasque, Basque Foundation for Science, 48013, Bilbao, Bizkaia, Spain
| | - Ana Ardá
- Molecular Recognition and Host-Pathogen Interactions, CIC bioGUNE, Basque Research and Technology Alliance, BRTA, Bizkaia Technology Park, Building 800, 48162, Derio, Bizkaia, Spain.,Ikerbasque, Basque Foundation for Science, 48013, Bilbao, Bizkaia, Spain
| | - Geert-Jan Boons
- Department of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands.,Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.,Department of Chemistry, University of Georgia, Athens, GA, 30602, USA
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18
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Srivastava AD, Unione L, Bunyatov M, Gagarinov IA, Delgado S, Abrescia NGA, Ardá A, Boons G. Chemoenzymatic Synthesis of Complex
N
‐Glycans of the Parasite
S. mansoni
to Examine the Importance of Epitope Presentation on DC‐SIGN recognition. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202105647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Apoorva D. Srivastava
- Department of Chemical Biology and Drug Discovery Utrecht Institute for Pharmaceutical Sciences Bijvoet Center for Biomolecular Research Utrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
| | - Luca Unione
- Department of Chemical Biology and Drug Discovery Utrecht Institute for Pharmaceutical Sciences Bijvoet Center for Biomolecular Research Utrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
| | - Mehman Bunyatov
- Department of Chemical Biology and Drug Discovery Utrecht Institute for Pharmaceutical Sciences Bijvoet Center for Biomolecular Research Utrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
| | - Ivan A. Gagarinov
- Department of Chemical Biology and Drug Discovery Utrecht Institute for Pharmaceutical Sciences Bijvoet Center for Biomolecular Research Utrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
| | - Sandra Delgado
- Molecular Recognition and Host-Pathogen Interactions CIC bioGUNE, Basque Research and Technology Alliance, BRTA Bizkaia Technology Park, Building 800 48162 Derio Bizkaia Spain
| | - Nicola G. A. Abrescia
- Molecular Recognition and Host-Pathogen Interactions CIC bioGUNE, Basque Research and Technology Alliance, BRTA Bizkaia Technology Park, Building 800 48162 Derio Bizkaia Spain
- Ikerbasque, Basque Foundation for Science 48013 Bilbao Bizkaia Spain
| | - Ana Ardá
- Molecular Recognition and Host-Pathogen Interactions CIC bioGUNE, Basque Research and Technology Alliance, BRTA Bizkaia Technology Park, Building 800 48162 Derio Bizkaia Spain
- Ikerbasque, Basque Foundation for Science 48013 Bilbao Bizkaia Spain
| | - Geert‐Jan Boons
- Department of Chemical Biology and Drug Discovery Utrecht Institute for Pharmaceutical Sciences Bijvoet Center for Biomolecular Research Utrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
- Complex Carbohydrate Research Center University of Georgia 315 Riverbend Road Athens GA 30602 USA
- Department of Chemistry University of Georgia Athens GA 30602 USA
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19
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Sanchez Perez E, Toor R, Bruyat P, Cepeda C, Degardin M, Dejeu J, Boturyn D, Coche-Guérente L. Impact of Multimeric Ferrocene-containing Cyclodecapeptide Scaffold on Host-Guest Interactions at a β-Cyclodextrin Covered Surface. Chemphyschem 2021; 22:2231-2239. [PMID: 34397150 DOI: 10.1002/cphc.202100469] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 08/05/2021] [Indexed: 11/07/2022]
Abstract
Among non-covalent bonds, the host-guest interaction is an attractive way to attach biomolecules to solid surfaces since the binding strength can be tuned by the nature of host and guest partners or through the valency of the interaction. For that purpose, we synthesized cyclodecapeptide scaffolds exhibiting in a spatially controlled manner two independent domains enabling the multimeric presentation of guest molecules on one face and the other face enabling the potential grafting of a biomolecule of interest. In this work, we were interested in the β-cyclodextrin/ferrocene inclusion complex formed on β-CD monolayers functionalized surfaces. By using surface sensitive techniques such as quartz crystal microbalance and surface plasmon resonance, we quantified the influence of the guest valency on the stability of the inclusion complexes. The results show a drastic enhancement of the affinity with the gradual increase of guest valency. Considering that the sequential binding events are equal and independent, we applied the multivalent model developed by the Huskens group to extract intrinsic binding constants and an effective concentration of host.
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Affiliation(s)
- Enrique Sanchez Perez
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
| | - Ritu Toor
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
| | - Pierrick Bruyat
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
| | - Céline Cepeda
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
| | - Mélissa Degardin
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
| | - Jérôme Dejeu
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
| | - Didier Boturyn
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
| | - Liliane Coche-Guérente
- Department of Molecular Chemistry, Univ. Grenoble-Alpes, CNRS, DCM UMR 5250, CS 40700, 38058, Grenoble Cedex 9, France
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20
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Yadav S, Naresh K, Jayaraman N. "Surface Density of Ligands Controls In-Plane and Aggregative Modes of Multivalent Glycovesicle-Lectin Recognitions". Chembiochem 2021; 22:3075-3081. [PMID: 34375491 DOI: 10.1002/cbic.202100321] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 08/09/2021] [Indexed: 11/09/2022]
Abstract
Glycovesicles are ideal tools to delineate finer mechanisms of the interactions at the biological cell membranes. Multivalency forms the basis which, in turn, should surpass more than one mechanism in order to maintain multiple roles that the ligand-lectin interactions encounter. Ligand densities hold a prime control to attenuate the interactions. In the present study, mannose trisaccharide interacting with a cognate receptor, namely, Con A, is assessed at the vesicle surfaces. A synthetic (1→3)(1→6)-branched mannose trisaccharide is tethered with a diacetylene monomer and glycovesicles of varying sugar densities are prepared. The polydiacetylene vesicles are prepared by maintaining uniform lipid concentrations. The interactions of the glycovesicles with the lectin are probed through dynamic light scattering and UV-Vis spectroscopy techniques. Binding efficacies are assessed by surface plasmon resonance technique. Aggregative and in-plane modes of interactions follow a ligand density-dependant manner at the vesicle surface. Vesicles with sparsely populated ligands engage lectin in an aggregative mode (trans-), leading to a cross-linked complex formation. Whereas glycovesicles imbedded with dense ligands engage lectin interaction in an in-plane mode intramolecularly (cis-). Sub-nanomolar dissociation constants govern the intramolecular interaction occurring within the plane of the vesicle, relatively more efficacious than the aggregative intermolecular interactions.
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Affiliation(s)
- Shivender Yadav
- Indian Institute of Science, Department of Organic Chemistry, INDIA
| | - Kottari Naresh
- Indian Institute of Science, Department of Organic Chemistry, INDIA
| | - Narayanaswamy Jayaraman
- Indian Institute of Science, Department of Organic Chemistry, Sir C.V. Raman Avenue, 560 012, Bangalore, INDIA
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21
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Suto N, Kamoshita S, Hosoya S, Sakurai K. Exploration of the Reactivity of Multivalent Electrophiles for Affinity Labeling: Sulfonyl Fluoride as a Highly Efficient and Selective Label. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202104347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Nanako Suto
- Department of Bioengineering and Life Science Tokyo University of Agriculture and Technology 4-24-16, Naka-cho, Koganei-shi Tokyo 184-8588 Japan
| | - Shione Kamoshita
- Department of Bioengineering and Life Science Tokyo University of Agriculture and Technology 4-24-16, Naka-cho, Koganei-shi Tokyo 184-8588 Japan
| | - Shoichi Hosoya
- Institute of Research Tokyo Medical and Dental University 1-5-45, Yushima, Bunkyo-ku Tokyo 113-8510 Japan
| | - Kaori Sakurai
- Department of Bioengineering and Life Science Tokyo University of Agriculture and Technology 4-24-16, Naka-cho, Koganei-shi Tokyo 184-8588 Japan
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22
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Suto N, Kamoshita S, Hosoya S, Sakurai K. Exploration of the Reactivity of Multivalent Electrophiles for Affinity Labeling: Sulfonyl Fluoride as a Highly Efficient and Selective Label. Angew Chem Int Ed Engl 2021; 60:17080-17087. [PMID: 34060195 DOI: 10.1002/anie.202104347] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/16/2021] [Indexed: 12/23/2022]
Abstract
Here we explored the reactivity of a set of multivalent electrophiles cofunctionalized with a carbohydrate ligand on gold nanoparticles to achieve efficient affinity labeling for target protein analysis. Evaluation of the reactivity and selectivity of the electrophiles against three different cognate binding proteins identified arylsulfonyl fluoride as the most efficient protein-reactive group in this study. We demonstrated that multivalent arylsulfonyl fluoride probe 4 at 50 nm concentration achieved selective affinity labeling and enrichment of a model protein PNA in cell lysate, which was more effective than photoaffinity probe 1 with arylazide group. Labeling site analysis by LC-MS/MS revealed that the nanoparticle-immobilized arylsulfonyl fluoride group can target multiple amino acid residues around the ligand binding site of the target proteins. Our study highlights the utility of arylsulfonyl fluoride as a highly effective multivalent affinity label suitable for covalently capturing unknown target proteins.
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Affiliation(s)
- Nanako Suto
- Department of Bioengineering and Life Science, Tokyo University of Agriculture and Technology, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Shione Kamoshita
- Department of Bioengineering and Life Science, Tokyo University of Agriculture and Technology, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Shoichi Hosoya
- Institute of Research, Tokyo Medical and Dental University, 1-5-45, Yushima, Bunkyo-ku, Tokyo, 113-8510, Japan
| | - Kaori Sakurai
- Department of Bioengineering and Life Science, Tokyo University of Agriculture and Technology, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
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23
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Narita H, Catti L, Yoshizawa M. An Aromatic Micelle‐Based Saccharide Cluster with Changeable Fluorescent Color and its Protein Interactions. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202102547] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Haruna Narita
- Laboratory for Chemistry and Life Science, Institute of Innovative Research Tokyo Institute of Technology 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
| | - Lorenzo Catti
- WPI Nano Life Science Institute Kanazawa University Kakuma-machi Kanazawa 920-1192 Japan
| | - Michito Yoshizawa
- Laboratory for Chemistry and Life Science, Institute of Innovative Research Tokyo Institute of Technology 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
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24
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Narita H, Catti L, Yoshizawa M. An Aromatic Micelle-Based Saccharide Cluster with Changeable Fluorescent Color and its Protein Interactions. Angew Chem Int Ed Engl 2021; 60:12791-12795. [PMID: 33713537 DOI: 10.1002/anie.202102547] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 03/11/2021] [Indexed: 12/21/2022]
Abstract
To develop a new type of synthetic saccharide clusters with changeable fluorescent colors, we herein designed a multisaccharide-coated aromatic micelle. The new cluster forms in water through the quantitative assembly of bent polyaromatic amphiphiles bearing three mannose groups. The spherical assembly, with a 2 nm-sized polyaromatic core and ca. 18 saccharide pendants, is stable even under high dilution conditions (up to 0.02 mM). The emission intensity and color of the saccharide cluster can be altered from moderate blue (ΦF =19 %) to strong red, orange, and green (ΦF up to 67 %) upon encapsulation of hydrophobic fluorescent dyes in water. Moreover, the present fluorescent clusters, both with and without the dyes, display selective interactions with mannose-binding proteins in vitro.
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Affiliation(s)
- Haruna Narita
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, 226-8503, Japan
| | - Lorenzo Catti
- WPI Nano Life Science Institute, Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
| | - Michito Yoshizawa
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, 226-8503, Japan
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25
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Yu. Kostina N, Söder D, Haraszti T, Xiao Q, Rahimi K, Partridge BE, Klein ML, Percec V, Rodriguez‐Emmenegger C. Enhanced Concanavalin A Binding to Preorganized Mannose Nanoarrays in Glycodendrimersomes Revealed Multivalent Interactions. Angew Chem Int Ed Engl 2021; 60:8352-8360. [PMID: 33493389 PMCID: PMC8048596 DOI: 10.1002/anie.202100400] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Indexed: 01/10/2023]
Abstract
The effect of the two-dimensional glycan display on glycan-lectin recognition remains poorly understood despite the importance of these interactions in a plethora of cellular processes, in (patho)physiology, as well as its potential for advanced therapeutics. Faced with this challenge we utilized glycodendrimersomes, a type of synthetic vesicles whose membrane mimics the surface of a cell and offers a means to probe the carbohydrate biological activity. These single-component vesicles were formed by the self-assembly of sequence-defined mannose-Janus dendrimers, which serve as surrogates for glycolipids. Using atomic force microscopy and molecular modeling we demonstrated that even mannose, a monosaccharide, was capable of organizing the sugar moieties into periodic nanoarrays without the need of the formation of liquid-ordered phases as assumed necessary for rafts. Kinetics studies of Concanavalin A binding revealed that those nanoarrays resulted in a new effective ligand yielding a ten-fold increase in the kinetic and thermodynamic constant of association.
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Affiliation(s)
- Nina Yu. Kostina
- DWI- Leibniz Institute for Interactive MaterialsInstitute of Technical and Macromolecular Chemistry RWTH Aachen UniversityForckenbeckstraße 5052074AachenGermany
| | - Dominik Söder
- DWI- Leibniz Institute for Interactive MaterialsInstitute of Technical and Macromolecular Chemistry RWTH Aachen UniversityForckenbeckstraße 5052074AachenGermany
| | - Tamás Haraszti
- DWI- Leibniz Institute for Interactive MaterialsInstitute of Technical and Macromolecular Chemistry RWTH Aachen UniversityForckenbeckstraße 5052074AachenGermany
| | - Qi Xiao
- Roy & Diana Vagelos LaboratoriesDepartment of ChemistryUniversity of PennsylvaniaPhiladelphiaPA19104-6323USA
- Institute of Computational Molecular ScienceTemple UniversityPhiladelphiaPA19122USA
| | - Khosrow Rahimi
- DWI- Leibniz Institute for Interactive MaterialsInstitute of Technical and Macromolecular Chemistry RWTH Aachen UniversityForckenbeckstraße 5052074AachenGermany
| | - Benjamin E. Partridge
- Roy & Diana Vagelos LaboratoriesDepartment of ChemistryUniversity of PennsylvaniaPhiladelphiaPA19104-6323USA
| | - Michael L. Klein
- Institute of Computational Molecular ScienceTemple UniversityPhiladelphiaPA19122USA
| | - Virgil Percec
- Roy & Diana Vagelos LaboratoriesDepartment of ChemistryUniversity of PennsylvaniaPhiladelphiaPA19104-6323USA
| | - Cesar Rodriguez‐Emmenegger
- DWI- Leibniz Institute for Interactive MaterialsInstitute of Technical and Macromolecular Chemistry RWTH Aachen UniversityForckenbeckstraße 5052074AachenGermany
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26
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Yu. Kostina N, Söder D, Haraszti T, Xiao Q, Rahimi K, Partridge BE, Klein ML, Percec V, Rodriguez‐Emmenegger C. Enhanced Concanavalin A Binding to Preorganized Mannose Nanoarrays in Glycodendrimersomes Revealed Multivalent Interactions. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202100400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Nina Yu. Kostina
- DWI- Leibniz Institute for Interactive Materials Institute of Technical and Macromolecular Chemistry RWTH Aachen University Forckenbeckstraße 50 52074 Aachen Germany
| | - Dominik Söder
- DWI- Leibniz Institute for Interactive Materials Institute of Technical and Macromolecular Chemistry RWTH Aachen University Forckenbeckstraße 50 52074 Aachen Germany
| | - Tamás Haraszti
- DWI- Leibniz Institute for Interactive Materials Institute of Technical and Macromolecular Chemistry RWTH Aachen University Forckenbeckstraße 50 52074 Aachen Germany
| | - Qi Xiao
- Roy & Diana Vagelos Laboratories Department of Chemistry University of Pennsylvania Philadelphia PA 19104-6323 USA
- Institute of Computational Molecular Science Temple University Philadelphia PA 19122 USA
| | - Khosrow Rahimi
- DWI- Leibniz Institute for Interactive Materials Institute of Technical and Macromolecular Chemistry RWTH Aachen University Forckenbeckstraße 50 52074 Aachen Germany
| | - Benjamin E. Partridge
- Roy & Diana Vagelos Laboratories Department of Chemistry University of Pennsylvania Philadelphia PA 19104-6323 USA
| | - Michael L. Klein
- Institute of Computational Molecular Science Temple University Philadelphia PA 19122 USA
| | - Virgil Percec
- Roy & Diana Vagelos Laboratories Department of Chemistry University of Pennsylvania Philadelphia PA 19104-6323 USA
| | - Cesar Rodriguez‐Emmenegger
- DWI- Leibniz Institute for Interactive Materials Institute of Technical and Macromolecular Chemistry RWTH Aachen University Forckenbeckstraße 50 52074 Aachen Germany
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27
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Wu K, Zhang B, Drechsler C, Holstein JJ, Clever GH. Rückgrat‐verknüpfte Liganden erhöhen die Vielfalt in heteroleptischen Koordinationskäfigen. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202012425] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Kai Wu
- Fakultät für Chemie und Chemische Biologie TU Dortmund Otto-Hahn Straße 6 44227 Dortmund Deutschland
| | - Bo Zhang
- Fakultät für Chemie und Chemische Biologie TU Dortmund Otto-Hahn Straße 6 44227 Dortmund Deutschland
| | - Christoph Drechsler
- Fakultät für Chemie und Chemische Biologie TU Dortmund Otto-Hahn Straße 6 44227 Dortmund Deutschland
| | - Julian J. Holstein
- Fakultät für Chemie und Chemische Biologie TU Dortmund Otto-Hahn Straße 6 44227 Dortmund Deutschland
| | - Guido H. Clever
- Fakultät für Chemie und Chemische Biologie TU Dortmund Otto-Hahn Straße 6 44227 Dortmund Deutschland
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28
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Krishna, Parshad B, Achazi K, Böttcher C, Haag R, Sharma SK. Newer Non-ionic A 2 B 2 -Type Enzyme-Responsive Amphiphiles for Drug Delivery. ChemMedChem 2021; 16:1457-1466. [PMID: 33559331 DOI: 10.1002/cmdc.202100031] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Revised: 02/05/2021] [Indexed: 12/29/2022]
Abstract
A new series of nonionic gemini amphiphiles have been synthesized in a multi-step chemoenzymatic approach by using a novel A2 B2 -type central core consisting of conjugating glycerol and propargyl bromide on 5-hydroxy isophthalic acid. A pair of hydrophilic monomethoxy poly(ethylene glycol) (mPEG) and hydrophobic linear alkyl chains (C12 /C15 ) were then added to the core to obtain amphiphilic architectures. The aggregation tendency in aqueous media was studied by dynamic light scattering, fluorescence spectroscopy and cryogenic transmission electron microscopy. The nanotransport potential of the amphiphiles was studied for model hydrophobic guests, that is, the dye Nile Red and the drug Nimodipine by using UV/Vis and fluorescence spectroscopy. Evaluation of the viability of amphiphile-treated A549 cells showed them to be well tolerated up to the concentrations studied. Being ester based, these amphiphiles exhibit stimuli-responsive sensitivity towards esterases, and a rupture of amphiphilic architecture was observed in the presence of immobilized Candida antarctica lipase (Novozym 435), thus facilitating release of the encapsulated guest from the aggregate.
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Affiliation(s)
- Krishna
- Department of Chemistry, University of Delhi, Delhi, 110007, India
| | - Badri Parshad
- Department of Chemistry, University of Delhi, Delhi, 110007, India.,Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, CB3 0AS, UK
| | - Katharina Achazi
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustraße 3, 14195, Berlin, Germany
| | - Christoph Böttcher
- Forschungszentrum für Elektronenmikroskopie, Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstraße 36a, 14195, Berlin, Germany
| | - Rainer Haag
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustraße 3, 14195, Berlin, Germany
| | - Sunil K Sharma
- Department of Chemistry, University of Delhi, Delhi, 110007, India
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29
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Affiliation(s)
- Peng Shi
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
| | - Yong Wang
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
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30
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Shi P, Wang Y. Synthetic DNA for Cell-Surface Engineering. Angew Chem Int Ed Engl 2021; 60:11580-11591. [PMID: 33006229 DOI: 10.1002/anie.202010278] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 09/29/2020] [Indexed: 12/14/2022]
Abstract
The cell membrane is not only a physical barrier, but also a functional organelle that regulates the communication between a cell and its environment. The ability to functionalize the cell membrane with synthetic molecules or nanostructures would advance cellular functions beyond what evolution has provided. The aim of this Minireview is to introduce recent progress in using synthetic DNA and DNA-based nanostructures for cell-surface engineering. We first introduce chemical conjugation and physical binding methods for monovalent and polyvalent surface engineering. We then introduce the application of these methods for either the promotion or inhibition of cell-environment communication in numerous applications, including the promotion of cell-cell recognition, regulation of intracellular pathways, protection of therapeutic cells, and sensing of the intracellular and extracellular microenvironments. Lastly, we summarize current challenges existing in this area and potential solutions to solve these challenges.
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Affiliation(s)
- Peng Shi
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Yong Wang
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
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31
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Salta J, Arp FF, Kühne C, Reissig H. Multivalent 1,2,3‐Triazole‐Linked Carbohydrate Mimetics by Huisgen–Meldal‐Sharpless Cycloadditions of an Azidopyran. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001389] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Joana Salta
- Institut für Chemie und Biochemie Freie Universität Berlin Takustrasse 3 14195 Berlin Germany
| | - Fabian F. Arp
- Institut für Chemie und Biochemie Freie Universität Berlin Takustrasse 3 14195 Berlin Germany
| | - Christian Kühne
- Institut für Laboratoriumsmedizin Klinische Chemie und Pathobiochemie Charité‐Universitätsmedizin Berlin Augustenburger Platz 1 13353 Berlin Germany
| | - Hans‐Ulrich Reissig
- Institut für Chemie und Biochemie Freie Universität Berlin Takustrasse 3 14195 Berlin Germany
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32
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Wu K, Zhang B, Drechsler C, Holstein JJ, Clever GH. Backbone-Bridging Promotes Diversity in Heteroleptic Cages. Angew Chem Int Ed Engl 2020; 60:6403-6407. [PMID: 33113268 PMCID: PMC7986237 DOI: 10.1002/anie.202012425] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2020] [Indexed: 01/17/2023]
Abstract
The combination of shape-complementary bis-monodentate ligands LA and LB with PdII cations yields heteroleptic cages cis-[Pd2 LA 2 LB 2 ] by self-sorting. Herein, we report how such assemblies can be diversified by introduction of covalent backbone bridges between two LA units. Together with solvent and guest effects, the flexibility of these linkers can modulate nuclearity, topology, and number of cavities in a family of four structurally diverse assemblies. Ligand LA1 , with flexible linker, reacts in CH3 CN with its LB counterpart to a tetranuclear dimer D1. In DMSO, however, a trinuclear pseudo-tetrahedron T1 is formed. The product of LA2 , with rigid linker, looks similar to D1, but with a rotated ligand arrangement. In presence of an anionic guest, this dimer D2 transforms and a hexanuclear prismatic barrel P2 crystallizes. We demonstrate how controlling a ligand's coordination mode can trigger structural differentiation and increase complexity in metallo-supramolecular assembly.
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Affiliation(s)
- Kai Wu
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Straße 6, 44227, Dortmund, Germany
| | - Bo Zhang
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Straße 6, 44227, Dortmund, Germany
| | - Christoph Drechsler
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Straße 6, 44227, Dortmund, Germany
| | - Julian J Holstein
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Straße 6, 44227, Dortmund, Germany
| | - Guido H Clever
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Straße 6, 44227, Dortmund, Germany
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33
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Han S, Kim YN, Jo G, Kim YE, Kim HM, Choi JM, Jung Y. Multivalent-Interaction-Driven Assembly of Discrete, Flexible, and Asymmetric Supramolecular Protein Nano-Prisms. Angew Chem Int Ed Engl 2020; 59:23244-23251. [PMID: 32856385 DOI: 10.1002/anie.202010054] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Indexed: 12/25/2022]
Abstract
Current approaches to design monodisperse protein assemblies require rigid, tight, and symmetric interactions between oligomeric protein units. Herein, we introduce a new multivalent-interaction-driven assembly strategy that allows flexible, spaced, and asymmetric assembly between protein oligomers. We discovered that two polygonal protein oligomers (ranging from triangle to hexagon) dominantly form a discrete and stable two-layered protein prism nanostructure via multivalent interactions between fused binding pairs. We demonstrated that protein nano-prisms with long flexible peptide linkers (over 80 amino acids) between protein oligomer layers could be discretely formed. Oligomers with different structures could also be monodispersely assembled into two-layered but asymmetric protein nano-prisms. Furthermore, producing higher-order architectures with multiple oligomer layers, for example, 3-layered nano-prisms or nanotubes, was also feasible.
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Affiliation(s)
- Suyeong Han
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Korea
| | - Yu-Na Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Korea
| | - Gyunghee Jo
- Biomedical Science and Engineering Interdisciplinary Program, KAIST, Daejeon, 34141, Korea
| | - Young Eun Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Korea
| | - Ho Min Kim
- Graduate School of Medical Science & Engineering, KAIST, Daejeon, 34141, Korea.,Center for Biomolecular & Cellular Structure, Institute for Basic Science (IBS), Daejeon, 34126, Korea
| | - Jeong-Mo Choi
- Natural Science Research Institute, KAIST, Daejeon, 34141, Korea.,Department of Chemistry, Busan National University, Busan, 46241, Korea
| | - Yongwon Jung
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Korea
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34
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Han S, Kim Y, Jo G, Kim YE, Kim HM, Choi J, Jung Y. Multivalent‐Interaction‐Driven Assembly of Discrete, Flexible, and Asymmetric Supramolecular Protein Nano‐Prisms. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202010054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Suyeong Han
- Department of Chemistry Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Korea
| | - Yu‐na Kim
- Department of Chemistry Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Korea
| | - Gyunghee Jo
- Biomedical Science and Engineering Interdisciplinary Program KAIST Daejeon 34141 Korea
| | - Young Eun Kim
- Department of Chemistry Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Korea
| | - Ho Min Kim
- Graduate School of Medical Science & Engineering KAIST Daejeon 34141 Korea
- Center for Biomolecular & Cellular Structure Institute for Basic Science (IBS) Daejeon 34126 Korea
| | - Jeong‐Mo Choi
- Natural Science Research Institute KAIST Daejeon 34141 Korea
- Department of Chemistry Busan National University Busan 46241 Korea
| | - Yongwon Jung
- Department of Chemistry Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Korea
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35
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Bachem G, Wamhoff E, Silberreis K, Kim D, Baukmann H, Fuchsberger F, Dernedde J, Rademacher C, Seitz O. Rational Design of a DNA‐Scaffolded High‐Affinity Binder for Langerin. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202006880] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Gunnar Bachem
- Department of Chemistry Humboldt-Universität zu Berlin 12489 Berlin Germany
| | - Eike‐Christian Wamhoff
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces 14424 Potsdam Germany
| | - Kim Silberreis
- Institute of Laboratory Medicine, Clinical Chemistry and Pathobiochemistry Charité-Universitätsmedizin Berlin corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health 13353 Berlin Germany
| | - Dongyoon Kim
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces 14424 Potsdam Germany
| | - Hannes Baukmann
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces 14424 Potsdam Germany
| | - Felix Fuchsberger
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces 14424 Potsdam Germany
| | - Jens Dernedde
- Institute of Laboratory Medicine, Clinical Chemistry and Pathobiochemistry Charité-Universitätsmedizin Berlin corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health 13353 Berlin Germany
| | - Christoph Rademacher
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces 14424 Potsdam Germany
| | - Oliver Seitz
- Department of Chemistry Humboldt-Universität zu Berlin 12489 Berlin Germany
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36
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Bachem G, Wamhoff E, Silberreis K, Kim D, Baukmann H, Fuchsberger F, Dernedde J, Rademacher C, Seitz O. Rational Design of a DNA-Scaffolded High-Affinity Binder for Langerin. Angew Chem Int Ed Engl 2020; 59:21016-21022. [PMID: 32749019 PMCID: PMC7693190 DOI: 10.1002/anie.202006880] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 07/24/2020] [Indexed: 11/17/2022]
Abstract
Binders of langerin could target vaccines to Langerhans cells for improved therapeutic effect. Since langerin has low affinity for monovalent glycan ligands, highly multivalent presentation has previously been key for targeting. Aiming to reduce the amount of ligand required, we rationally designed molecularly defined high-affinity binders based on the precise display of glycomimetic ligands (Glc2NTs) on DNA-PNA scaffolds. Rather than mimicking langerin's homotrimeric structure with a C3-symmetric scaffold, we developed readily accessible, easy-to-design bivalent binders. The method considers the requirements for bridging sugar binding sites and statistical rebinding as a means to both strengthen the interactions at single binding sites and amplify the avidity enhancement provided by chelation. This gave a 1150-fold net improvement over the affinity of the free ligand and provided a nanomolar binder (IC50 =300 nM) for specific internalization by langerin-expressing cells.
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Affiliation(s)
- Gunnar Bachem
- Department of ChemistryHumboldt-Universität zu Berlin12489BerlinGermany
| | - Eike‐Christian Wamhoff
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces14424PotsdamGermany
| | - Kim Silberreis
- Institute of Laboratory Medicine, Clinical Chemistry and PathobiochemistryCharité-Universitätsmedizin Berlincorporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health13353BerlinGermany
| | - Dongyoon Kim
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces14424PotsdamGermany
| | - Hannes Baukmann
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces14424PotsdamGermany
| | - Felix Fuchsberger
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces14424PotsdamGermany
| | - Jens Dernedde
- Institute of Laboratory Medicine, Clinical Chemistry and PathobiochemistryCharité-Universitätsmedizin Berlincorporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health13353BerlinGermany
| | - Christoph Rademacher
- Department of Biomolecular SystemsMax Planck Institute of Colloids and Interfaces14424PotsdamGermany
| | - Oliver Seitz
- Department of ChemistryHumboldt-Universität zu Berlin12489BerlinGermany
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37
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Uvyn A, De Geest BG. Multivalent Antibody-Recruiting Macromolecules: Linking Increased Binding Affinity with Enhanced Innate Immune Killing. Chembiochem 2020; 21:3036-3043. [PMID: 32497371 PMCID: PMC7116353 DOI: 10.1002/cbic.202000261] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Revised: 06/02/2020] [Indexed: 12/17/2022]
Abstract
Antibody-recruiting molecules (ARMs) are a novel class of immunotherapeutics. They are capable of introducing antibodies onto disease-relevant targets such as cancer cells, bacterial cells or viruses. This can induce antibody-mediated immune responses such as antibody-dependent cellular cytotoxicity (ADCC), complement-dependent cytotoxicity (CDC) and antibody-dependent phagocytosis (ADCP), which can kill the pathogen. In contrast to the classic ARMs, multivalent ARMs could offer the advantage of increasing the efficiency of antibody recruitment and subsequent innate immune killing. Such compounds consist of multiple target-binding termini (TBT) and/or antibody-binding termini (ABT). Those multivalent interactions are able to convert low binding affinities into increased binding avidities. This minireview summarizes the current status of multivalent ARMs and gives insight into possible benefits, hurdles still to be overcome and future perspectives.
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Affiliation(s)
- Annemiek Uvyn
- A. Uvyn, Prof. Dr. B. G. De Geest, Department of Pharmaceutics, Ghent University, Ottergemsesteenweg 460, Ghent, Belgium
| | - Bruno G. De Geest
- A. Uvyn, Prof. Dr. B. G. De Geest, Department of Pharmaceutics, Ghent University, Ottergemsesteenweg 460, Ghent, Belgium
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38
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Yadav S, Naresh K, Jayaraman N. Surface Ligand Density Switches Glycovesicles between Monomeric and Multimeric Lectin Recognition. Chembiochem 2020; 22:485-490. [PMID: 32926592 DOI: 10.1002/cbic.202000544] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 09/04/2020] [Indexed: 11/07/2022]
Abstract
Carbohydrate-protein interactions define a multitude of cellular recognition events. We present herein synthetic glycovesicles as cell-surface mimics in order to switch the nature of lectin recognition. The covalent glycovesicles, constituted with diacetylene monomers of various ligand densities at their surfaces, are prepared through photo-polymerization. Vesicles with sparsely imbedded ligands engage in a lectin interaction leading to the formation of a dense, crosslinked multimeric complex. On the other hand, vesicles with many ligands, or completely covered with them, switch the lectin interaction to form a fully soluble monomeric complex, without crosslinking. Nanomolar dissociation constants govern these interactions, as assessed by a ligand-displacement assay. The study demonstrates the switching nature - between monomeric and multimeric - of the interaction as a function of ligand density in the vesicles; the results are directly relevant to understanding such a phenomenon occurring at cell surfaces.
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Affiliation(s)
- Shivender Yadav
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560012, India
| | - Kottari Naresh
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560012, India.,Present address: HP Green R&D Centre, KIADB Industrial Area, Bangalore, 560 067, India
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39
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Biswas R, Naskar S, Ghosh S, Das M, Banerjee S. A Remarkable Fluorescence Quenching Based Amplification in ATP Detection through Signal Transduction in Self-Assembled Multivalent Aggregates. Chemistry 2020; 26:13595-13600. [PMID: 32776606 DOI: 10.1002/chem.202002648] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 07/22/2020] [Indexed: 01/20/2023]
Abstract
Signal transduction is essential for the survival of living organisms, because it allows them to respond to the changes in external environments. In artificial systems, signal transduction has been exploited for the highly sensitive detection of analytes. Herein, a remarkable signal transduction, upon ATP binding, in the multivalent fibrillar nanoaggregates of anthracene conjugated imidazolium receptors is reported. The aggregates of one particular amphiphilic receptor sensed ATP in high pm concentrations with one ATP molecule essentially quenching the emission of thousands of receptors. A cooperative merging of the multivalent binding and signal transduction led to this superquenching and translated to an outstanding enhancement of more than a millionfold in the sensitivity of ATP detection by the nanoaggregates; in comparison to the "molecular" imidazolium receptors. Furthermore, an exceptional selectivity to ATP over other nucleotides was demonstrated.
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Affiliation(s)
- Rakesh Biswas
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal, India
| | - Sumit Naskar
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal, India
| | - Surya Ghosh
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal, India
| | - Mousumi Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal, India
| | - Supratim Banerjee
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal, India
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40
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Gallego I, Lostalé-Seijo I, Montenegro J. Stronger Together: Multivalent Phage Capsids Inhibit Virus Entry. Chembiochem 2020; 22:478-480. [PMID: 32856365 PMCID: PMC7461183 DOI: 10.1002/cbic.202000536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Revised: 08/26/2020] [Indexed: 11/09/2022]
Abstract
Antivirals are now more important than ever. To efficiently inhibit virus replication, antiviral multivalent strategies need sufficient affinity to overcome the excellent matching between the virus and its receptor. This report highlights a phage capsid scaffold strategy that can be used to precisely position sialic acid moieties to inhibit influenza A virus replication.
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Affiliation(s)
- Iván Gallego
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) Departamento de Química Orgánica, Universidade de Santiago de Compostela, Campus Vida, 15782, Santiago de Compostela, Spain
| | - Irene Lostalé-Seijo
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) Departamento de Química Orgánica, Universidade de Santiago de Compostela, Campus Vida, 15782, Santiago de Compostela, Spain
| | - Javier Montenegro
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) Departamento de Química Orgánica, Universidade de Santiago de Compostela, Campus Vida, 15782, Santiago de Compostela, Spain
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41
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Dobbe CB, Gutiérrez‐Blanco A, Tan TTY, Hepp A, Poyatos M, Peris E, Hahn FE. Template-Controlled Synthesis of Polyimidazolium Salts by Multiple [2+2] Cycloaddition Reactions. Chemistry 2020; 26:11565-11570. [PMID: 32237240 PMCID: PMC7540564 DOI: 10.1002/chem.202001515] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Indexed: 12/16/2022]
Abstract
The tetrakisimidazolium salt H4 -2(Br)4 , featuring a central benzene linker and 1,2,4,5-(nBu-imidazolium-Ph-CH=CH-) substituents reacts with Ag2 O in the presence of AgBF4 to yield the tetranuclear, oktakis-NHC assembly [3](BF4 )4 . Cation [3]4+ features four pairs of olefins from the two tetrakis-NHC ligands perfectly arranged for a subsequent [2+2] cycloaddition. Irradiation of [3](BF4 )4 with a high pressure Hg lamp connects the two tetra-NHC ligands through four cyclobutane linkers to give compound [4](BF4 )4 . Removal of the template metals yields the novel oktakisimidazolium salt H8 -5(BF4 )8 . The tetrakisimidazolium salt H4 -2(BF4 )4 and the oktakisimidazolium salt H8 -5(BF4 )8 have been used as multivalent anion receptors and their anion binding properties towards six different anions have been compared.
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Affiliation(s)
- Christian B. Dobbe
- Institut für Anorganische und Analytische ChemieWestfälische Wilhelms-Universität MünsterCorrensstraße 3048149MünsterGermany
| | - Ana Gutiérrez‐Blanco
- Institut für Anorganische und Analytische ChemieWestfälische Wilhelms-Universität MünsterCorrensstraße 3048149MünsterGermany
- Institute of Advanced Materials (INAM)Universitat Jaume IAvda. Vicente Sos Baynat s/nCastellon12071Spain
| | - Tristan T. Y. Tan
- Institut für Anorganische und Analytische ChemieWestfälische Wilhelms-Universität MünsterCorrensstraße 3048149MünsterGermany
| | - Alexander Hepp
- Institut für Anorganische und Analytische ChemieWestfälische Wilhelms-Universität MünsterCorrensstraße 3048149MünsterGermany
| | - Macarena Poyatos
- Institute of Advanced Materials (INAM)Universitat Jaume IAvda. Vicente Sos Baynat s/nCastellon12071Spain
| | - Eduardo Peris
- Institute of Advanced Materials (INAM)Universitat Jaume IAvda. Vicente Sos Baynat s/nCastellon12071Spain
| | - F. Ekkehardt Hahn
- Institut für Anorganische und Analytische ChemieWestfälische Wilhelms-Universität MünsterCorrensstraße 3048149MünsterGermany
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42
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Overeem NJ, Hamming PH(E, Huskens J. Time‐Dependent Binding of Molecules and Nanoparticles at Receptor‐Modified Supported Lipid Bilayer Gradients in a Microfluidic Device. ChemistrySelect 2020. [DOI: 10.1002/slct.202002593] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Nico J. Overeem
- Molecular Nanofabrication GroupMESA + Institute for Nanotechnology Faculty of Science and Technology University of Twente P.O. Box 217, 7500 AE Enschede The Netherlands
| | - Pieter H. (Erik) Hamming
- Molecular Nanofabrication GroupMESA + Institute for Nanotechnology Faculty of Science and Technology University of Twente P.O. Box 217, 7500 AE Enschede The Netherlands
| | - Jurriaan Huskens
- Molecular Nanofabrication GroupMESA + Institute for Nanotechnology Faculty of Science and Technology University of Twente P.O. Box 217, 7500 AE Enschede The Netherlands
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43
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Bhatia S, Hilsch M, Cuellar‐Camacho JL, Ludwig K, Nie C, Parshad B, Wallert M, Block S, Lauster D, Böttcher C, Herrmann A, Haag R. Adaptive Flexible Sialylated Nanogels as Highly Potent Influenza A Virus Inhibitors. Angew Chem Int Ed Engl 2020; 59:12417-12422. [PMID: 32441859 PMCID: PMC7384064 DOI: 10.1002/anie.202006145] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Indexed: 11/13/2022]
Abstract
Flexible multivalent 3D nanosystems that can deform and adapt onto the virus surface via specific ligand-receptor multivalent interactions can efficiently block virus adhesion onto the cell. We here report on the synthesis of a 250 nm sized flexible sialylated nanogel that adapts onto the influenza A virus (IAV) surface via multivalent binding of its sialic acid (SA) residues with hemagglutinin spike proteins on the virus surface. We could demonstrate that the high flexibility of sialylated nanogel improves IAV inhibition by 400 times as compared to a rigid sialylated nanogel in the hemagglutination inhibition assay. The flexible sialylated nanogel efficiently inhibits the influenza A/X31 (H3N2) infection with IC50 values in low picomolar concentrations and also blocks the virus entry into MDCK-II cells.
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Affiliation(s)
- Sumati Bhatia
- Institute of Chemistry and BiochemistryFreie Universität BerlinTakustraße 314195BerlinGermany
| | - Malte Hilsch
- Institute of Biology & IRI Life SciencesHumboldt-Universität zu BerlinInvalidenstraße 4210115BerlinGermany
| | | | - Kai Ludwig
- Forschungszentrum für Elektronenmikroskopie, and Core Facility BioSupraMolInstitute of Chemistry and BiochemistryFreie Universität BerlinFabeckstr. 36a14195BerlinGermany
| | - Chuanxiong Nie
- Institute of Chemistry and BiochemistryFreie Universität BerlinTakustraße 314195BerlinGermany
| | - Badri Parshad
- Institute of Chemistry and BiochemistryFreie Universität BerlinTakustraße 314195BerlinGermany
| | - Matthias Wallert
- Institute of Chemistry and BiochemistryFreie Universität BerlinTakustraße 314195BerlinGermany
| | - Stephan Block
- Institute of Chemistry and BiochemistryFreie Universität BerlinTakustraße 314195BerlinGermany
| | - Daniel Lauster
- Institute of Chemistry and BiochemistryFreie Universität BerlinTakustraße 314195BerlinGermany
| | - Christoph Böttcher
- Forschungszentrum für Elektronenmikroskopie, and Core Facility BioSupraMolInstitute of Chemistry and BiochemistryFreie Universität BerlinFabeckstr. 36a14195BerlinGermany
| | - Andreas Herrmann
- Institute of Biology & IRI Life SciencesHumboldt-Universität zu BerlinInvalidenstraße 4210115BerlinGermany
| | - Rainer Haag
- Institute of Chemistry and BiochemistryFreie Universität BerlinTakustraße 314195BerlinGermany
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44
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Bhatia S, Hilsch M, Cuellar‐Camacho JL, Ludwig K, Nie C, Parshad B, Wallert M, Block S, Lauster D, Böttcher C, Herrmann A, Haag R. Adaptive Flexible Sialylated Nanogels as Highly Potent Influenza A Virus Inhibitors. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202006145] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Sumati Bhatia
- Institute of Chemistry and Biochemistry Freie Universität Berlin Takustraße 3 14195 Berlin Germany
| | - Malte Hilsch
- Institute of Biology & IRI Life Sciences Humboldt-Universität zu Berlin Invalidenstraße 42 10115 Berlin Germany
| | | | - Kai Ludwig
- Forschungszentrum für Elektronenmikroskopie, and Core Facility BioSupraMol Institute of Chemistry and Biochemistry Freie Universität Berlin Fabeckstr. 36a 14195 Berlin Germany
| | - Chuanxiong Nie
- Institute of Chemistry and Biochemistry Freie Universität Berlin Takustraße 3 14195 Berlin Germany
| | - Badri Parshad
- Institute of Chemistry and Biochemistry Freie Universität Berlin Takustraße 3 14195 Berlin Germany
| | - Matthias Wallert
- Institute of Chemistry and Biochemistry Freie Universität Berlin Takustraße 3 14195 Berlin Germany
| | - Stephan Block
- Institute of Chemistry and Biochemistry Freie Universität Berlin Takustraße 3 14195 Berlin Germany
| | - Daniel Lauster
- Institute of Chemistry and Biochemistry Freie Universität Berlin Takustraße 3 14195 Berlin Germany
| | - Christoph Böttcher
- Forschungszentrum für Elektronenmikroskopie, and Core Facility BioSupraMol Institute of Chemistry and Biochemistry Freie Universität Berlin Fabeckstr. 36a 14195 Berlin Germany
| | - Andreas Herrmann
- Institute of Biology & IRI Life Sciences Humboldt-Universität zu Berlin Invalidenstraße 42 10115 Berlin Germany
| | - Rainer Haag
- Institute of Chemistry and Biochemistry Freie Universität Berlin Takustraße 3 14195 Berlin Germany
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45
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Baldini L, Casnati A, Sansone F. Multivalent and Multifunctional Calixarenes in Bionanotechnology. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000255] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Laura Baldini
- Department of Chemistry Life Sciences and Environmental Sustainability University of Parma Parco Area delle Scienze, 17/a 43124 Parma Italy
| | - Alessandro Casnati
- Department of Chemistry Life Sciences and Environmental Sustainability University of Parma Parco Area delle Scienze, 17/a 43124 Parma Italy
| | - Francesco Sansone
- Department of Chemistry Life Sciences and Environmental Sustainability University of Parma Parco Area delle Scienze, 17/a 43124 Parma Italy
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46
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Pina A, Kadri M, Arosio D, Dal Corso A, Coll JL, Gennari C, Boturyn D. Multimeric Presentation of RGD Peptidomimetics Enhances Integrin Binding and Tumor Cell Uptake. Chemistry 2020; 26:7492-7496. [PMID: 32227540 DOI: 10.1002/chem.202001115] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 03/25/2020] [Indexed: 12/13/2022]
Abstract
The use of multimeric ligands is considered as a promising strategy to improve tumor targeting for diagnosis and therapy. Herein, tetrameric RGD (Arg-Gly-Asp) peptidomimetics were designed to target αv β3 integrin-expressing tumor cells. These compounds were prepared by an oxime chemoselective assembly of cyclo(DKP-RGD) ligands and a cyclodecapeptide scaffold, which allows a tetrameric presentation. The resulting tetrameric RGD peptidomimetics were shown to improve αv β3 integrin binding compared with the monomeric form. Interestingly, these compounds were also able to enhance tumor cell endocytosis in the same way as tetrameric RGD peptides. Altogether, the results show the potential of the tetrameric cyclo(DKP-RGD) ligands for in vivo imaging and drug delivery.
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Affiliation(s)
- Arianna Pina
- Università degli Studi di Milano, Dipartimento di Chimica, Via C. Golgi 19, 20133, Milan, Italy
| | - Malika Kadri
- Institute for Advanced Biosciences, University Grenoble Alpes, INSERM, CNRS, Site Santé, Allée des Alpes, 38700, La Tronche, France
| | - Daniela Arosio
- CNR, Istituto di Scienze e Tecnologie Chimiche (SCITEC) "Giulio Natta", Via C. Golgi, 19, 20133, Milan, Italy
| | - Alberto Dal Corso
- Università degli Studi di Milano, Dipartimento di Chimica, Via C. Golgi 19, 20133, Milan, Italy
| | - Jean-Luc Coll
- Institute for Advanced Biosciences, University Grenoble Alpes, INSERM, CNRS, Site Santé, Allée des Alpes, 38700, La Tronche, France
| | - Cesare Gennari
- Università degli Studi di Milano, Dipartimento di Chimica, Via C. Golgi 19, 20133, Milan, Italy
| | - Didier Boturyn
- Department of Molecular Chemistry, University Grenoble Alpes, CNRS, 570, rue de la chimie, CS 40700, 38041, GRENOBLE Cedex 9, France
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47
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Min HS, Kim HJ, Naito M, Ogura S, Toh K, Hayashi K, Kim BS, Fukushima S, Anraku Y, Miyata K, Kataoka K. Systemic Brain Delivery of Antisense Oligonucleotides across the Blood-Brain Barrier with a Glucose-Coated Polymeric Nanocarrier. Angew Chem Int Ed Engl 2020; 59:8173-8180. [PMID: 31995252 PMCID: PMC7317551 DOI: 10.1002/anie.201914751] [Citation(s) in RCA: 105] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 01/13/2020] [Indexed: 12/14/2022]
Abstract
Current antisense oligonucleotide (ASO) therapies for the treatment of central nervous system (CNS) disorders are performed through invasive administration, thereby placing a major burden on patients. To alleviate this burden, we herein report systemic ASO delivery to the brain by crossing the blood-brain barrier using glycemic control as an external trigger. Glucose-coated polymeric nanocarriers, which can be bound by glucose transporter-1 expressed on the brain capillary endothelial cells, are designed for stable encapsulation of ASOs, with a particle size of about 45 nm and an adequate glucose-ligand density. The optimized nanocarrier efficiently accumulates in the brain tissue 1 h after intravenous administration and exhibits significant knockdown of a target long non-coding RNA in various brain regions, including the cerebral cortex and hippocampus. These results demonstrate that the glucose-modified polymeric nanocarriers enable noninvasive ASO administration to the brain for the treatment of CNS disorders.
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Affiliation(s)
- Hyun Su Min
- Department of Materials EngineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-8656Japan
| | - Hyun Jin Kim
- Center for Disease Biology and Integrative MedicineGraduate School of MedicineThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-0033Japan
| | - Mitsuru Naito
- Center for Disease Biology and Integrative MedicineGraduate School of MedicineThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-0033Japan
| | - Satomi Ogura
- Department of Materials EngineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-8656Japan
| | - Kazuko Toh
- Innovation Center of Nanomedicine (iCONM)Kawasaki Institute of Industrial Promotion3-25-14 Tonomachi, Kawasaki-kuKawasaki210-0821Japan
| | - Kotaro Hayashi
- Innovation Center of Nanomedicine (iCONM)Kawasaki Institute of Industrial Promotion3-25-14 Tonomachi, Kawasaki-kuKawasaki210-0821Japan
| | - Beob Soo Kim
- Department of Materials EngineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-8656Japan
| | - Shigeto Fukushima
- Innovation Center of Nanomedicine (iCONM)Kawasaki Institute of Industrial Promotion3-25-14 Tonomachi, Kawasaki-kuKawasaki210-0821Japan
| | - Yasutaka Anraku
- Innovation Center of Nanomedicine (iCONM)Kawasaki Institute of Industrial Promotion3-25-14 Tonomachi, Kawasaki-kuKawasaki210-0821Japan
- Department of BioengineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-8656Japan
| | - Kanjiro Miyata
- Department of Materials EngineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-8656Japan
| | - Kazunori Kataoka
- Innovation Center of Nanomedicine (iCONM)Kawasaki Institute of Industrial Promotion3-25-14 Tonomachi, Kawasaki-kuKawasaki210-0821Japan
- Institute for Future InitiativesThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113-0033Japan
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48
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Min HS, Kim HJ, Naito M, Ogura S, Toh K, Hayashi K, Kim BS, Fukushima S, Anraku Y, Miyata K, Kataoka K. Systemic Brain Delivery of Antisense Oligonucleotides across the Blood–Brain Barrier with a Glucose‐Coated Polymeric Nanocarrier. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201914751] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Hyun Su Min
- Department of Materials Engineering Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Hyun Jin Kim
- Center for Disease Biology and Integrative Medicine Graduate School of Medicine The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-0033 Japan
| | - Mitsuru Naito
- Center for Disease Biology and Integrative Medicine Graduate School of Medicine The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-0033 Japan
| | - Satomi Ogura
- Department of Materials Engineering Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Kazuko Toh
- Innovation Center of Nanomedicine (iCONM) Kawasaki Institute of Industrial Promotion 3-25-14 Tonomachi, Kawasaki-ku Kawasaki 210-0821 Japan
| | - Kotaro Hayashi
- Innovation Center of Nanomedicine (iCONM) Kawasaki Institute of Industrial Promotion 3-25-14 Tonomachi, Kawasaki-ku Kawasaki 210-0821 Japan
| | - Beob Soo Kim
- Department of Materials Engineering Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Shigeto Fukushima
- Innovation Center of Nanomedicine (iCONM) Kawasaki Institute of Industrial Promotion 3-25-14 Tonomachi, Kawasaki-ku Kawasaki 210-0821 Japan
| | - Yasutaka Anraku
- Innovation Center of Nanomedicine (iCONM) Kawasaki Institute of Industrial Promotion 3-25-14 Tonomachi, Kawasaki-ku Kawasaki 210-0821 Japan
- Department of Bioengineering Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Kanjiro Miyata
- Department of Materials Engineering Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Kazunori Kataoka
- Innovation Center of Nanomedicine (iCONM) Kawasaki Institute of Industrial Promotion 3-25-14 Tonomachi, Kawasaki-ku Kawasaki 210-0821 Japan
- Institute for Future Initiatives The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-0033 Japan
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49
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Shimoyama D, Haino T. Entropy‐Driven Cooperativity in the Guest Binding of an Octaphosphonate Bis‐cavitand. Chemistry 2020; 26:3074-3079. [DOI: 10.1002/chem.201905036] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Indexed: 11/08/2022]
Affiliation(s)
- Daisuke Shimoyama
- Department of ChemistryGraduate School of ScienceHiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima 739-8526 Japan
| | - Takeharu Haino
- Department of ChemistryGraduate School of ScienceHiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima 739-8526 Japan
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50
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Di Iorio D, Huskens J. Surface Modification with Control over Ligand Density for the Study of Multivalent Biological Systems. ChemistryOpen 2020; 9:53-66. [PMID: 31921546 PMCID: PMC6948118 DOI: 10.1002/open.201900290] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 11/11/2019] [Indexed: 12/30/2022] Open
Abstract
In the study of multivalent interactions at interfaces, as occur for example at cell membranes, the density of the ligands or receptors displayed at the interface plays a pivotal role, affecting both the overall binding affinities and the valencies involved in the interactions. In order to control the ligand density at the interface, several approaches have been developed, and they concern the functionalization of a wide range of materials. Here, different methods employed in the modification of surfaces with controlled densities of ligands are being reviewed. Examples of such methods encompass the formation of self-assembled monolayers (SAMs), supported lipid bilayers (SLBs) and polymeric layers on surfaces. Particular emphasis is given to the methods employed in the study of different types of multivalent biological interactions occurring at the functionalized surfaces and their working principles.
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Affiliation(s)
- Daniele Di Iorio
- Molecular NanoFabrication group MESA+ Institute for NanotechnologyUniversity of TwenteEnschedeThe Netherlands
| | - Jurriaan Huskens
- Molecular NanoFabrication group MESA+ Institute for NanotechnologyUniversity of TwenteEnschedeThe Netherlands
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